[1] "ofn"        "-oTUCEC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/22553827/UCEC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/22534122/transformed.cor.cli.txt"

nPatients in clinical file=548, in cluster file=539, common to both=539
[1] 101 539
[1] "AMP PEAK  1(1P35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           56                           483 
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           56                           483 
[1] "AMP PEAK  2(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           73                           466 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           73                           466 
[1] "AMP PEAK  3(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          243                           296 
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          243                           296 
[1] "AMP PEAK  4(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE 
                        256                         283 
  AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE 
                        256                         283 
[1] "AMP PEAK  5(1Q42.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE 
                          227                           312 
  AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE 
                          227                           312 
[1] "AMP PEAK  6(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE 
                          122                           417 
  AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE 
                          122                           417 
[1] "AMP PEAK  7(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE 
                        119                         420 
  AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE 
                        119                         420 
[1] "AMP PEAK  8(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE 
                           82                           457 
  AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE 
                           82                           457 
[1] "AMP PEAK  9(3P14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE 
                           65                           474 
  AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE 
                           65                           474 
[1] "AMP PEAK 10(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE 
                          175                           364 
  AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE 
                          175                           364 
[1] "AMP PEAK 11(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          164                           375 
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          164                           375 
[1] "AMP PEAK 12(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE 
                           52                           487 
  AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE 
                           52                           487 
[1] "AMP PEAK 13(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE 
                            89                            450 
  AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE 
                            89                            450 
[1] "AMP PEAK 14(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE 
                           57                           482 
  AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE 
                           57                           482 
[1] "AMP PEAK 15(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE 
                          117                           422 
  AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE 
                          117                           422 
[1] "AMP PEAK 16(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE 
                           88                           451 
  AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE 
                           88                           451 
[1] "AMP PEAK 17(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE 
                           93                           446 
  AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE 
                           93                           446 
[1] "AMP PEAK 18(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE 
                           126                            413 
  AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE 
                           126                            413 
[1] "AMP PEAK 19(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           162                            377 
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           162                            377 
[1] "AMP PEAK 20(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           209                            330 
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           209                            330 
[1] "AMP PEAK 21(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           215                            324 
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           215                            324 
[1] "AMP PEAK 22(9P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           65                           474 
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           65                           474 
[1] "AMP PEAK 23(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           39                           500 
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           39                           500 
[1] "AMP PEAK 24(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           143                            396 
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           143                            396 
[1] "AMP PEAK 25(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            52                            487 
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            52                            487 
[1] "AMP PEAK 26(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            74                            465 
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            74                            465 
[1] "AMP PEAK 27(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE 
                            60                            479 
  AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE 
                            60                            479 
[1] "AMP PEAK 28(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE 
                            92                            447 
  AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE 
                            92                            447 
[1] "AMP PEAK 29(12Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE 
                             87                             452 
  AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE 
                             87                             452 
[1] "AMP PEAK 30(12Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE 
                           100                            439 
  AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE 
                           100                            439 
[1] "AMP PEAK 31(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE 
                          58                          481 
  AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE 
                          58                          481 
[1] "AMP PEAK 32(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE 
                            64                            475 
  AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE 
                            64                            475 
[1] "AMP PEAK 33(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE 
                             79                             460 
  AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE 
                             79                             460 
[1] "AMP PEAK 34(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE 
                            38                            501 
  AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE 
                            38                            501 
[1] "AMP PEAK 35(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE 
                            66                            473 
  AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE 
                            66                            473 
[1] "AMP PEAK 36(17Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE 
                            71                            468 
  AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE 
                            71                            468 
[1] "AMP PEAK 37(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE 
                          75                          464 
  AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE 
                          75                          464 
[1] "AMP PEAK 38(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE 
                           105                            434 
  AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE 
                           105                            434 
[1] "AMP PEAK 39(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE 
                             96                             443 
  AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE 
                             96                             443 
[1] "AMP PEAK 40(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE 
                            69                            470 
  AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE 
                            69                            470 
[1] "AMP PEAK 41(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE 
                            92                            447 
  AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE 
                            92                            447 
[1] "AMP PEAK 42(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE 
                             99                             440 
  AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE 
                             99                             440 
[1] "AMP PEAK 43(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE 
                         121                          418 
  AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE 
                         121                          418 
[1] "AMP PEAK 44(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE 
                         117                          422 
  AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE 
                         117                          422 
[1] "AMP PEAK 45(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE 
                            152                             387 
  AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE 
                            152                             387 
[1] "AMP PEAK 46(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE 
                            152                             387 
  AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE 
                            152                             387 
[1] "AMP PEAK 47(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE 
                            153                             386 
  AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE 
                            153                             386 
[1] "AMP PEAK 48(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE 
                            62                            477 
  AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE 
                            62                            477 
[1] "AMP PEAK 49(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE 
                            90                            449 
  AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE 
                            90                            449 
[1] "AMP PEAK 50(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE 
                         93                         446 
  AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE 
                         93                         446 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            71                            468 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            71                            468 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            83                            456 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            83                            456 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                           513 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                           513 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           49                           490 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           49                           490 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           52                           487 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           52                           487 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           79                           460 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           79                           460 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            43                            496 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            43                            496 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           94                           445 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           94                           445 
[1] "DEL PEAK  9(4P15.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE 
                            99                            440 
  DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE 
                            99                            440 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          106                           433 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          106                           433 
[1] "DEL PEAK 11(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          130                           409 
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          130                           409 
[1] "DEL PEAK 12(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          111                           428 
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          111                           428 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         46                         493 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         46                         493 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           72                           467 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           72                           467 
[1] "DEL PEAK 15(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            498 
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            498 
[1] "DEL PEAK 16(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           55                           484 
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           55                           484 
[1] "DEL PEAK 17(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           63                           476 
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           63                           476 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          119                           420 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          119                           420 
[1] "DEL PEAK 19(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          117                           422 
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          117                           422 
[1] "DEL PEAK 20(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         80                         459 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         80                         459 
[1] "DEL PEAK 21(9Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          129                           410 
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          129                           410 
[1] "DEL PEAK 22(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          132                           407 
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          132                           407 
[1] "DEL PEAK 23(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                            50                            489 
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                            50                            489 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                             78                             461 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                             78                             461 
[1] "DEL PEAK 25(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           104                            435 
  DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE 
                           104                            435 
[1] "DEL PEAK 26(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE 
                            69                            470 
  DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE 
                            69                            470 
[1] "DEL PEAK 27(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE 
                          94                          445 
  DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE 
                          94                          445 
[1] "DEL PEAK 28(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE 
                            56                            483 
  DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE 
                            56                            483 
[1] "DEL PEAK 29(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE 
                             66                             473 
  DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE 
                             66                             473 
[1] "DEL PEAK 30(13Q11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE 
                          98                          441 
  DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE 
                          98                          441 
[1] "DEL PEAK 31(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           106                            433 
  DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE 
                           106                            433 
[1] "DEL PEAK 32(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE 
                            73                            466 
  DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE 
                            73                            466 
[1] "DEL PEAK 33(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE 
                           140                            399 
  DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE 
                           140                            399 
[1] "DEL PEAK 34(15Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE 
                         115                          424 
  DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE 
                         115                          424 
[1] "DEL PEAK 35(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE 
                            92                            447 
  DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE 
                            92                            447 
[1] "DEL PEAK 36(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE 
                         154                          385 
  DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE 
                         154                          385 
[1] "DEL PEAK 37(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE 
                           158                            381 
  DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE 
                           158                            381 
[1] "DEL PEAK 38(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           166                            373 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           166                            373 
[1] "DEL PEAK 39(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE 
                           122                            417 
  DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE 
                           122                            417 
[1] "DEL PEAK 40(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE 
                           128                            411 
  DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE 
                           128                            411 
[1] "DEL PEAK 41(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                           105                            434 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                           105                            434 
[1] "DEL PEAK 42(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE 
                            114                             425 
  DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE 
                            114                             425 
[1] "DEL PEAK 43(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE 
                            90                            449 
  DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE 
                            90                            449 
[1] "DEL PEAK 44(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE 
                          98                          441 
  DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE 
                          98                          441 
[1] "DEL PEAK 45(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE 
                           157                            382 
  DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE 
                           157                            382 
[1] "DEL PEAK 46(19P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE 
                          58                          481 
  DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE 
                          58                          481 
[1] "DEL PEAK 47(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE 
                             67                             472 
  DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE 
                             67                             472 
[1] "DEL PEAK 48(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE 
                            35                            504 
  DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE 
                            35                            504 
[1] "DEL PEAK 49(22Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE 
                            95                            444 
  DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE 
                            95                            444 
[1] "DEL PEAK 50(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE 
                            140                             399 
  DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE 
                            140                             399 
[1] "DEL PEAK 51(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE 
                           88                           451 
  DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE 
                           88                           451 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 539 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 539 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     14     12     14      7
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           5                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13      4      7      7     16
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED       54      0      0      2
  AMP PEAK  1(1P35.2) WILD-TYPE    154    178     99     52
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          54                           154
  CLUS_2                           0                           178
  CLUS_3                           0                            99
  CLUS_4                           2                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       30      9      6
  AMP PEAK  1(1P35.2) WILD-TYPE    124     69    187
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          30                           124
  CLUS_2                           9                            69
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED        1      1      6      8     18      4
  AMP PEAK  1(1P35.2) WILD-TYPE     38     80     46     48     66     64
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P35.2) MUTATED        7
  AMP PEAK  1(1P35.2) WILD-TYPE     46
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           6                            46
  CLUS_4                           8                            48
  CLUS_5                          18                            66
  CLUS_6                           4                            64
  CLUS_7                           7                            46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        1     34      6      4
  AMP PEAK  1(1P35.2) WILD-TYPE    107    148     87     46
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          34                           148
  CLUS_3                           6                            87
  CLUS_4                           4                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED       46      3      2      4
  AMP PEAK  1(1P35.2) WILD-TYPE    142    120     91    129
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          46                           142
  CLUS_2                           3                           120
  CLUS_3                           2                            91
  CLUS_4                           4                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED       37      0      7      0      7      4
  AMP PEAK  1(1P35.2) WILD-TYPE     86     53     40     65    101     62
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P35.2) MUTATED        0
  AMP PEAK  1(1P35.2) WILD-TYPE     75
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          37                            86
  CLUS_2                           0                            53
  CLUS_3                           7                            40
  CLUS_4                           0                            65
  CLUS_5                           7                           101
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED       38      2      7      4      2
  AMP PEAK  1(1P35.2) WILD-TYPE    126     78     99    129     45
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          38                           126
  CLUS_2                           2                            78
  CLUS_3                           7                            99
  CLUS_4                           4                           129
  CLUS_5                           2                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       11     38      4
  AMP PEAK  1(1P35.2) WILD-TYPE    207    134    136
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          11                           207
  CLUS_2                          38                           134
  CLUS_3                           4                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED       20      5      5     12
  AMP PEAK  1(1P35.2) WILD-TYPE     96     93     87     80
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          20                            96
  CLUS_2                           5                            93
  CLUS_3                           5                            87
  CLUS_4                          12                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       29      5      8
  AMP PEAK  1(1P35.2) WILD-TYPE    134    127     95
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          29                           134
  CLUS_2                           5                           127
  CLUS_3                           8                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        1      6      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     14     11     14      7
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED        2      5      0      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     12      4      7      7     16
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED       70      0      0      3
  AMP PEAK  2(1P34.2) WILD-TYPE    138    178     99     51
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          70                           138
  CLUS_2                           0                           178
  CLUS_3                           0                            99
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       39     18      6
  AMP PEAK  2(1P34.2) WILD-TYPE    115     60    187
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          39                           115
  CLUS_2                          18                            60
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED        1      1      4     14     18     10
  AMP PEAK  2(1P34.2) WILD-TYPE     38     80     48     42     66     58
                               vv
clus                            CLUS_7
  AMP PEAK  2(1P34.2) MUTATED        8
  AMP PEAK  2(1P34.2) WILD-TYPE     45
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           4                            48
  CLUS_4                          14                            42
  CLUS_5                          18                            66
  CLUS_6                          10                            58
  CLUS_7                           8                            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        0     36     16      4
  AMP PEAK  2(1P34.2) WILD-TYPE    108    146     77     46
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           0                           108
  CLUS_2                          36                           146
  CLUS_3                          16                            77
  CLUS_4                           4                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED       61      3      3      5
  AMP PEAK  2(1P34.2) WILD-TYPE    127    120     90    128
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          61                           127
  CLUS_2                           3                           120
  CLUS_3                           3                            90
  CLUS_4                           5                           128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED       49      0     10      0      8      5
  AMP PEAK  2(1P34.2) WILD-TYPE     74     53     37     65    100     61
                               vv
clus                            CLUS_7
  AMP PEAK  2(1P34.2) MUTATED        0
  AMP PEAK  2(1P34.2) WILD-TYPE     75
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          49                            74
  CLUS_2                           0                            53
  CLUS_3                          10                            37
  CLUS_4                           0                            65
  CLUS_5                           8                           100
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED       59      2      5      4      1
  AMP PEAK  2(1P34.2) WILD-TYPE    105     78    101    129     46
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          59                           105
  CLUS_2                           2                            78
  CLUS_3                           5                           101
  CLUS_4                           4                           129
  CLUS_5                           1                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       12     55      4
  AMP PEAK  2(1P34.2) WILD-TYPE    206    117    136
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          12                           206
  CLUS_2                          55                           117
  CLUS_3                           4                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED       26      6     10     17
  AMP PEAK  2(1P34.2) WILD-TYPE     90     92     82     75
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          26                            90
  CLUS_2                           6                            92
  CLUS_3                          10                            82
  CLUS_4                          17                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       40      6     13
  AMP PEAK  2(1P34.2) WILD-TYPE    123    126     90
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          40                           123
  CLUS_2                           6                           126
  CLUS_3                          13                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED       11     12      6      1
  AMP PEAK  3(1Q21.3) WILD-TYPE      4      5      8      6
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          11                             4
  CLUS_2                          12                             5
  CLUS_3                           6                             8
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED        9      7      6      5      3
  AMP PEAK  3(1Q21.3) WILD-TYPE      5      2      1      2     13
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           7                             2
  CLUS_3                           6                             1
  CLUS_4                           5                             2
  CLUS_5                           3                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED      128     25     37     53
  AMP PEAK  3(1Q21.3) WILD-TYPE     80    153     62      1
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         128                            80
  CLUS_2                          25                           153
  CLUS_3                          37                            62
  CLUS_4                          53                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       82     34     70
  AMP PEAK  3(1Q21.3) WILD-TYPE     72     44    123
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          82                            72
  CLUS_2                          34                            44
  CLUS_3                          70                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q21.3) MUTATED       19     42     15     36     38     30
  AMP PEAK  3(1Q21.3) WILD-TYPE     20     39     37     20     46     38
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q21.3) MUTATED       21
  AMP PEAK  3(1Q21.3) WILD-TYPE     32
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          19                            20
  CLUS_2                          42                            39
  CLUS_3                          15                            37
  CLUS_4                          36                            20
  CLUS_5                          38                            46
  CLUS_6                          30                            38
  CLUS_7                          21                            32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED       58     91     36     16
  AMP PEAK  3(1Q21.3) WILD-TYPE     50     91     57     34
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          58                            50
  CLUS_2                          91                            91
  CLUS_3                          36                            57
  CLUS_4                          16                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED      111     53     41     38
  AMP PEAK  3(1Q21.3) WILD-TYPE     77     70     52     95
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         111                            77
  CLUS_2                          53                            70
  CLUS_3                          41                            52
  CLUS_4                          38                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q21.3) MUTATED       82     28     22     32     40     18
  AMP PEAK  3(1Q21.3) WILD-TYPE     41     25     25     33     68     48
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q21.3) MUTATED       21
  AMP PEAK  3(1Q21.3) WILD-TYPE     54
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          82                            41
  CLUS_2                          28                            25
  CLUS_3                          22                            25
  CLUS_4                          32                            33
  CLUS_5                          40                            68
  CLUS_6                          18                            48
  CLUS_7                          21                            54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED      104     45     38     40     13
  AMP PEAK  3(1Q21.3) WILD-TYPE     60     35     68     93     34
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         104                            60
  CLUS_2                          45                            35
  CLUS_3                          38                            68
  CLUS_4                          40                            93
  CLUS_5                          13                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       92    102     46
  AMP PEAK  3(1Q21.3) WILD-TYPE    126     70     94
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          92                           126
  CLUS_2                         102                            70
  CLUS_3                          46                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED       73     33     40     36
  AMP PEAK  3(1Q21.3) WILD-TYPE     43     65     52     56
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          73                            43
  CLUS_2                          33                            65
  CLUS_3                          40                            52
  CLUS_4                          36                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       90     41     51
  AMP PEAK  3(1Q21.3) WILD-TYPE     73     91     52
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          90                            73
  CLUS_2                          41                            91
  CLUS_3                          51                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q22) MUTATED       11     11      6      1
  AMP PEAK  4(1Q22) WILD-TYPE      4      6      8      6
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        11                           4
  CLUS_2                        11                           6
  CLUS_3                         6                           8
  CLUS_4                         1                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q22) MUTATED        9      6      6      5      3
  AMP PEAK  4(1Q22) WILD-TYPE      5      3      1      2     13
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         6                           3
  CLUS_3                         6                           1
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q22) MUTATED      138     26     38     54
  AMP PEAK  4(1Q22) WILD-TYPE     70    152     61      0
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                       138                          70
  CLUS_2                        26                         152
  CLUS_3                        38                          61
  CLUS_4                        54                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q22) MUTATED       86     39     72
  AMP PEAK  4(1Q22) WILD-TYPE     68     39    121
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        86                          68
  CLUS_2                        39                          39
  CLUS_3                        72                         121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(1Q22) MUTATED       20     43     16     36     40     29     24
  AMP PEAK  4(1Q22) WILD-TYPE     19     38     36     20     44     39     29
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        20                          19
  CLUS_2                        43                          38
  CLUS_3                        16                          36
  CLUS_4                        36                          20
  CLUS_5                        40                          44
  CLUS_6                        29                          39
  CLUS_7                        24                          29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q22) MUTATED       60     94     37     17
  AMP PEAK  4(1Q22) WILD-TYPE     48     88     56     33
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        60                          48
  CLUS_2                        94                          88
  CLUS_3                        37                          56
  CLUS_4                        17                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q22) MUTATED      119     54     41     42
  AMP PEAK  4(1Q22) WILD-TYPE     69     69     52     91
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                       119                          69
  CLUS_2                        54                          69
  CLUS_3                        41                          52
  CLUS_4                        42                          91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  4(1Q22) MUTATED       88     28     23     33     41     20     23
  AMP PEAK  4(1Q22) WILD-TYPE     35     25     24     32     67     46     52
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        88                          35
  CLUS_2                        28                          25
  CLUS_3                        23                          24
  CLUS_4                        33                          32
  CLUS_5                        41                          67
  CLUS_6                        20                          46
  CLUS_7                        23                          52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q22) MUTATED      108     45     41     45     14
  AMP PEAK  4(1Q22) WILD-TYPE     56     35     65     88     33
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                       108                          56
  CLUS_2                        45                          35
  CLUS_3                        41                          65
  CLUS_4                        45                          88
  CLUS_5                        14                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q22) MUTATED       92    110     51
  AMP PEAK  4(1Q22) WILD-TYPE    126     62     89
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        92                         126
  CLUS_2                       110                          62
  CLUS_3                        51                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q22) MUTATED       73     38     42     40
  AMP PEAK  4(1Q22) WILD-TYPE     43     60     50     52
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        73                          43
  CLUS_2                        38                          60
  CLUS_3                        42                          50
  CLUS_4                        40                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q22) MUTATED       92     46     55
  AMP PEAK  4(1Q22) WILD-TYPE     71     86     48
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q22) MUTATED AMP PEAK  4(1Q22) WILD-TYPE
  CLUS_1                        92                          71
  CLUS_2                        46                          86
  CLUS_3                        55                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(1Q42.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q42.3) MUTATED       10     10      5      1
  AMP PEAK  5(1Q42.3) WILD-TYPE      5      7      9      6
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          10                             5
  CLUS_2                          10                             7
  CLUS_3                           5                             9
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q42.3) MUTATED        9      4      5      5      3
  AMP PEAK  5(1Q42.3) WILD-TYPE      5      5      2      2     13
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           4                             5
  CLUS_3                           5                             2
  CLUS_4                           5                             2
  CLUS_5                           3                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q42.3) MUTATED      109     26     40     52
  AMP PEAK  5(1Q42.3) WILD-TYPE     99    152     59      2
D5V3, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                         109                            99
  CLUS_2                          26                           152
  CLUS_3                          40                            59
  CLUS_4                          52                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q42.3) MUTATED       73     27     71
  AMP PEAK  5(1Q42.3) WILD-TYPE     81     51    122
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          73                            81
  CLUS_2                          27                            51
  CLUS_3                          71                           122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(1Q42.3) MUTATED       19     41     16     29     27     28
  AMP PEAK  5(1Q42.3) WILD-TYPE     20     40     36     27     57     40
                               vv
clus                            CLUS_7
  AMP PEAK  5(1Q42.3) MUTATED       25
  AMP PEAK  5(1Q42.3) WILD-TYPE     28
D5V5, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          19                            20
  CLUS_2                          41                            40
  CLUS_3                          16                            36
  CLUS_4                          29                            27
  CLUS_5                          27                            57
  CLUS_6                          28                            40
  CLUS_7                          25                            28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q42.3) MUTATED       57     79     33     16
  AMP PEAK  5(1Q42.3) WILD-TYPE     51    103     60     34
D5V6, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          57                            51
  CLUS_2                          79                           103
  CLUS_3                          33                            60
  CLUS_4                          16                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q42.3) MUTATED       92     54     39     42
  AMP PEAK  5(1Q42.3) WILD-TYPE     96     69     54     91
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          92                            96
  CLUS_2                          54                            69
  CLUS_3                          39                            54
  CLUS_4                          42                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(1Q42.3) MUTATED       66     29     17     34     38     21
  AMP PEAK  5(1Q42.3) WILD-TYPE     57     24     30     31     70     45
                               vv
clus                            CLUS_7
  AMP PEAK  5(1Q42.3) MUTATED       22
  AMP PEAK  5(1Q42.3) WILD-TYPE     53
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          66                            57
  CLUS_2                          29                            24
  CLUS_3                          17                            30
  CLUS_4                          34                            31
  CLUS_5                          38                            70
  CLUS_6                          21                            45
  CLUS_7                          22                            53
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q42.3) MUTATED       82     47     38     43     16
  AMP PEAK  5(1Q42.3) WILD-TYPE     82     33     68     90     31
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          82                            82
  CLUS_2                          47                            33
  CLUS_3                          38                            68
  CLUS_4                          43                            90
  CLUS_5                          16                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q42.3) MUTATED       94     84     48
  AMP PEAK  5(1Q42.3) WILD-TYPE    124     88     92
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          94                           124
  CLUS_2                          84                            88
  CLUS_3                          48                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q42.3) MUTATED       55     35     38     38
  AMP PEAK  5(1Q42.3) WILD-TYPE     61     63     54     54
D5V11, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          55                            61
  CLUS_2                          35                            63
  CLUS_3                          38                            54
  CLUS_4                          38                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q42.3) MUTATED       73     42     51
  AMP PEAK  5(1Q42.3) WILD-TYPE     90     90     52
D5V12, multiclass
        clus
vv       AMP PEAK  5(1Q42.3) MUTATED AMP PEAK  5(1Q42.3) WILD-TYPE
  CLUS_1                          73                            90
  CLUS_2                          42                            90
  CLUS_3                          51                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P24.3) MUTATED        1      4      3      0
  AMP PEAK  6(2P24.3) WILD-TYPE     14     13     11      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           4                            13
  CLUS_3                           3                            11
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(2P24.3) MUTATED        1      4      1      0      2
  AMP PEAK  6(2P24.3) WILD-TYPE     13      5      6      7     14
D6V2, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P24.3) MUTATED       91      6     18      7
  AMP PEAK  6(2P24.3) WILD-TYPE    117    172     81     47
D6V3, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          91                           117
  CLUS_2                           6                           172
  CLUS_3                          18                            81
  CLUS_4                           7                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P24.3) MUTATED       55     21     21
  AMP PEAK  6(2P24.3) WILD-TYPE     99     57    172
D6V4, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          55                            99
  CLUS_2                          21                            57
  CLUS_3                          21                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(2P24.3) MUTATED        4      6     12     18     30     16
  AMP PEAK  6(2P24.3) WILD-TYPE     35     75     40     38     54     52
                               vv
clus                            CLUS_7
  AMP PEAK  6(2P24.3) MUTATED       15
  AMP PEAK  6(2P24.3) WILD-TYPE     38
D6V5, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           6                            75
  CLUS_3                          12                            40
  CLUS_4                          18                            38
  CLUS_5                          30                            54
  CLUS_6                          16                            52
  CLUS_7                          15                            38
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P24.3) MUTATED       12     61     19      9
  AMP PEAK  6(2P24.3) WILD-TYPE     96    121     74     41
D6V6, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          12                            96
  CLUS_2                          61                           121
  CLUS_3                          19                            74
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P24.3) MUTATED       74     16     17     15
  AMP PEAK  6(2P24.3) WILD-TYPE    114    107     76    118
D6V7, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          74                           114
  CLUS_2                          16                           107
  CLUS_3                          17                            76
  CLUS_4                          15                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(2P24.3) MUTATED       59      7     14      6     19     11
  AMP PEAK  6(2P24.3) WILD-TYPE     64     46     33     59     89     55
                               vv
clus                            CLUS_7
  AMP PEAK  6(2P24.3) MUTATED        6
  AMP PEAK  6(2P24.3) WILD-TYPE     69
D6V8, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          59                            64
  CLUS_2                           7                            46
  CLUS_3                          14                            33
  CLUS_4                           6                            59
  CLUS_5                          19                            89
  CLUS_6                          11                            55
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(2P24.3) MUTATED       67     11     18     16      8
  AMP PEAK  6(2P24.3) WILD-TYPE     97     69     88    117     39
D6V9, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          67                            97
  CLUS_2                          11                            69
  CLUS_3                          18                            88
  CLUS_4                          16                           117
  CLUS_5                           8                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P24.3) MUTATED       31     72     17
  AMP PEAK  6(2P24.3) WILD-TYPE    187    100    123
D6V10, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          31                           187
  CLUS_2                          72                           100
  CLUS_3                          17                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(2P24.3) MUTATED       44     11     17     21
  AMP PEAK  6(2P24.3) WILD-TYPE     72     87     75     71
D6V11, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          44                            72
  CLUS_2                          11                            87
  CLUS_3                          17                            75
  CLUS_4                          21                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(2P24.3) MUTATED       51     16     26
  AMP PEAK  6(2P24.3) WILD-TYPE    112    116     77
D6V12, multiclass
        clus
vv       AMP PEAK  6(2P24.3) MUTATED AMP PEAK  6(2P24.3) WILD-TYPE
  CLUS_1                          51                           112
  CLUS_2                          16                           116
  CLUS_3                          26                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(2Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2Q13) MUTATED        2      6      2      0
  AMP PEAK  7(2Q13) WILD-TYPE     13     11     12      7
D7V1, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                         2                          13
  CLUS_2                         6                          11
  CLUS_3                         2                          12
  CLUS_4                         0                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2Q13) MUTATED        3      5      1      0      1
  AMP PEAK  7(2Q13) WILD-TYPE     11      4      6      7     15
D7V2, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         0                           7
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2Q13) MUTATED       96      1     16      6
  AMP PEAK  7(2Q13) WILD-TYPE    112    177     83     48
D7V3, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        96                         112
  CLUS_2                         1                         177
  CLUS_3                        16                          83
  CLUS_4                         6                          48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2Q13) MUTATED       59     26     11
  AMP PEAK  7(2Q13) WILD-TYPE     95     52    182
D7V4, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        59                          95
  CLUS_2                        26                          52
  CLUS_3                        11                         182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(2Q13) MUTATED        4      4      7     20     31     16     17
  AMP PEAK  7(2Q13) WILD-TYPE     35     77     45     36     53     52     36
D7V5, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                         4                          35
  CLUS_2                         4                          77
  CLUS_3                         7                          45
  CLUS_4                        20                          36
  CLUS_5                        31                          53
  CLUS_6                        16                          52
  CLUS_7                        17                          36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2Q13) MUTATED        9     61     19     10
  AMP PEAK  7(2Q13) WILD-TYPE     99    121     74     40
D7V6, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                         9                          99
  CLUS_2                        61                         121
  CLUS_3                        19                          74
  CLUS_4                        10                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2Q13) MUTATED       86     10     14      8
  AMP PEAK  7(2Q13) WILD-TYPE    102    113     79    125
D7V7, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        86                         102
  CLUS_2                        10                         113
  CLUS_3                        14                          79
  CLUS_4                         8                         125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(2Q13) MUTATED       73      5     13      2     15      6      4
  AMP PEAK  7(2Q13) WILD-TYPE     50     48     34     63     93     60     71
D7V8, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        73                          50
  CLUS_2                         5                          48
  CLUS_3                        13                          34
  CLUS_4                         2                          63
  CLUS_5                        15                          93
  CLUS_6                         6                          60
  CLUS_7                         4                          71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2Q13) MUTATED       74      7     19      8      9
  AMP PEAK  7(2Q13) WILD-TYPE     90     73     87    125     38
D7V9, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        74                          90
  CLUS_2                         7                          73
  CLUS_3                        19                          87
  CLUS_4                         8                         125
  CLUS_5                         9                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2Q13) MUTATED       24     83     10
  AMP PEAK  7(2Q13) WILD-TYPE    194     89    130
D7V10, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        24                         194
  CLUS_2                        83                          89
  CLUS_3                        10                         130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2Q13) MUTATED       43      7     19     25
  AMP PEAK  7(2Q13) WILD-TYPE     73     91     73     67
D7V11, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        43                          73
  CLUS_2                         7                          91
  CLUS_3                        19                          73
  CLUS_4                        25                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2Q13) MUTATED       54      9     31
  AMP PEAK  7(2Q13) WILD-TYPE    109    123     72
D7V12, multiclass
        clus
vv       AMP PEAK  7(2Q13) MUTATED AMP PEAK  7(2Q13) WILD-TYPE
  CLUS_1                        54                         109
  CLUS_2                         9                         123
  CLUS_3                        31                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(3P25.1) MUTATED        1      5      2      0
  AMP PEAK  8(3P25.1) WILD-TYPE     14     12     12      7
D8V1, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           5                            12
  CLUS_3                           2                            12
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(3P25.1) MUTATED        3      3      2      0      0
  AMP PEAK  8(3P25.1) WILD-TYPE     11      6      5      7     16
D8V2, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(3P25.1) MUTATED       70      1      9      2
  AMP PEAK  8(3P25.1) WILD-TYPE    138    177     90     52
D8V3, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          70                           138
  CLUS_2                           1                           177
  CLUS_3                           9                            90
  CLUS_4                           2                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(3P25.1) MUTATED       38     19     11
  AMP PEAK  8(3P25.1) WILD-TYPE    116     59    182
D8V4, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          38                           116
  CLUS_2                          19                            59
  CLUS_3                          11                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(3P25.1) MUTATED        2      5      4     16     20     10
  AMP PEAK  8(3P25.1) WILD-TYPE     37     76     48     40     64     58
                               vv
clus                            CLUS_7
  AMP PEAK  8(3P25.1) MUTATED        6
  AMP PEAK  8(3P25.1) WILD-TYPE     47
D8V5, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           5                            76
  CLUS_3                           4                            48
  CLUS_4                          16                            40
  CLUS_5                          20                            64
  CLUS_6                          10                            58
  CLUS_7                           6                            47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(3P25.1) MUTATED        6     44      9      4
  AMP PEAK  8(3P25.1) WILD-TYPE    102    138     84     46
D8V6, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                           6                           102
  CLUS_2                          44                           138
  CLUS_3                           9                            84
  CLUS_4                           4                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(3P25.1) MUTATED       62      4      8      8
  AMP PEAK  8(3P25.1) WILD-TYPE    126    119     85    125
D8V7, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          62                           126
  CLUS_2                           4                           119
  CLUS_3                           8                            85
  CLUS_4                           8                           125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(3P25.1) MUTATED       41      0     13      4     15      5
  AMP PEAK  8(3P25.1) WILD-TYPE     82     53     34     61     93     61
                               vv
clus                            CLUS_7
  AMP PEAK  8(3P25.1) MUTATED        4
  AMP PEAK  8(3P25.1) WILD-TYPE     71
D8V8, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          41                            82
  CLUS_2                           0                            53
  CLUS_3                          13                            34
  CLUS_4                           4                            61
  CLUS_5                          15                            93
  CLUS_6                           5                            61
  CLUS_7                           4                            71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(3P25.1) MUTATED       50      4     10     11      5
  AMP PEAK  8(3P25.1) WILD-TYPE    114     76     96    122     42
D8V9, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          50                           114
  CLUS_2                           4                            76
  CLUS_3                          10                            96
  CLUS_4                          11                           122
  CLUS_5                           5                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(3P25.1) MUTATED       18     50     12
  AMP PEAK  8(3P25.1) WILD-TYPE    200    122    128
D8V10, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          18                           200
  CLUS_2                          50                           122
  CLUS_3                          12                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(3P25.1) MUTATED       27      6     18     14
  AMP PEAK  8(3P25.1) WILD-TYPE     89     92     74     78
D8V11, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          27                            89
  CLUS_2                           6                            92
  CLUS_3                          18                            74
  CLUS_4                          14                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(3P25.1) MUTATED       36     11     18
  AMP PEAK  8(3P25.1) WILD-TYPE    127    121     85
D8V12, multiclass
        clus
vv       AMP PEAK  8(3P25.1) MUTATED AMP PEAK  8(3P25.1) WILD-TYPE
  CLUS_1                          36                           127
  CLUS_2                          11                           121
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P14.1) MUTATED        0      2      1      0
  AMP PEAK  9(3P14.1) WILD-TYPE     15     15     13      7
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           2                            15
  CLUS_3                           1                            13
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P14.1) MUTATED        1      1      1      0      0
  AMP PEAK  9(3P14.1) WILD-TYPE     13      8      6      7     16
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P14.1) MUTATED       55      1      8      1
  AMP PEAK  9(3P14.1) WILD-TYPE    153    177     91     53
D9V3, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          55                           153
  CLUS_2                           1                           177
  CLUS_3                           8                            91
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P14.1) MUTATED       31     13     12
  AMP PEAK  9(3P14.1) WILD-TYPE    123     65    181
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          31                           123
  CLUS_2                          13                            65
  CLUS_3                          12                           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P14.1) MUTATED        2      5      3      9     15      9
  AMP PEAK  9(3P14.1) WILD-TYPE     37     76     49     47     69     59
                               vv
clus                            CLUS_7
  AMP PEAK  9(3P14.1) MUTATED        5
  AMP PEAK  9(3P14.1) WILD-TYPE     48
D9V5, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           5                            76
  CLUS_3                           3                            49
  CLUS_4                           9                            47
  CLUS_5                          15                            69
  CLUS_6                           9                            59
  CLUS_7                           5                            48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P14.1) MUTATED        5     28     12      3
  AMP PEAK  9(3P14.1) WILD-TYPE    103    154     81     47
D9V6, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                          28                           154
  CLUS_3                          12                            81
  CLUS_4                           3                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P14.1) MUTATED       46      3      7      9
  AMP PEAK  9(3P14.1) WILD-TYPE    142    120     86    124
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          46                           142
  CLUS_2                           3                           120
  CLUS_3                           7                            86
  CLUS_4                           9                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P14.1) MUTATED       29      0      9      4     14      4
  AMP PEAK  9(3P14.1) WILD-TYPE     94     53     38     61     94     62
                               vv
clus                            CLUS_7
  AMP PEAK  9(3P14.1) MUTATED        5
  AMP PEAK  9(3P14.1) WILD-TYPE     70
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          29                            94
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           4                            61
  CLUS_5                          14                            94
  CLUS_6                           4                            62
  CLUS_7                           5                            70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P14.1) MUTATED       37      3     10     10      4
  AMP PEAK  9(3P14.1) WILD-TYPE    127     77     96    123     43
D9V9, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          37                           127
  CLUS_2                           3                            77
  CLUS_3                          10                            96
  CLUS_4                          10                           123
  CLUS_5                           4                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P14.1) MUTATED       17     35     12
  AMP PEAK  9(3P14.1) WILD-TYPE    201    137    128
D9V10, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          17                           201
  CLUS_2                          35                           137
  CLUS_3                          12                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P14.1) MUTATED       21      5     16     10
  AMP PEAK  9(3P14.1) WILD-TYPE     95     93     76     82
D9V11, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          21                            95
  CLUS_2                           5                            93
  CLUS_3                          16                            76
  CLUS_4                          10                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P14.1) MUTATED       26     10     16
  AMP PEAK  9(3P14.1) WILD-TYPE    137    122     87
D9V12, multiclass
        clus
vv       AMP PEAK  9(3P14.1) MUTATED AMP PEAK  9(3P14.1) WILD-TYPE
  CLUS_1                          26                           137
  CLUS_2                          10                           122
  CLUS_3                          16                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3Q26.2) MUTATED        1     11      1      0
  AMP PEAK 10(3Q26.2) WILD-TYPE     14      6     13      7
D10V1, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          11                             6
  CLUS_3                           1                            13
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3Q26.2) MUTATED        4      8      1      0      0
  AMP PEAK 10(3Q26.2) WILD-TYPE     10      1      6      7     16
D10V2, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3Q26.2) MUTATED      154      2     12      7
  AMP PEAK 10(3Q26.2) WILD-TYPE     54    176     87     47
D10V3, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                         154                            54
  CLUS_2                           2                           176
  CLUS_3                          12                            87
  CLUS_4                           7                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3Q26.2) MUTATED       88     36     26
  AMP PEAK 10(3Q26.2) WILD-TYPE     66     42    167
D10V4, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                          88                            66
  CLUS_2                          36                            42
  CLUS_3                          26                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3Q26.2) MUTATED        5      7     12     27     42     24
  AMP PEAK 10(3Q26.2) WILD-TYPE     34     74     40     29     42     44
                               vv
clus                            CLUS_7
  AMP PEAK 10(3Q26.2) MUTATED       17
  AMP PEAK 10(3Q26.2) WILD-TYPE     36
D10V5, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           7                            74
  CLUS_3                          12                            40
  CLUS_4                          27                            29
  CLUS_5                          42                            42
  CLUS_6                          24                            44
  CLUS_7                          17                            36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3Q26.2) MUTATED       10     80     32     12
  AMP PEAK 10(3Q26.2) WILD-TYPE     98    102     61     38
D10V6, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                          10                            98
  CLUS_2                          80                           102
  CLUS_3                          32                            61
  CLUS_4                          12                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3Q26.2) MUTATED      126      5     23     20
  AMP PEAK 10(3Q26.2) WILD-TYPE     62    118     70    113
D10V7, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                         126                            62
  CLUS_2                           5                           118
  CLUS_3                          23                            70
  CLUS_4                          20                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3Q26.2) MUTATED       95      0     26      5     26     14
  AMP PEAK 10(3Q26.2) WILD-TYPE     28     53     21     60     82     52
                               vv
clus                            CLUS_7
  AMP PEAK 10(3Q26.2) MUTATED        8
  AMP PEAK 10(3Q26.2) WILD-TYPE     67
D10V8, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                          95                            28
  CLUS_2                           0                            53
  CLUS_3                          26                            21
  CLUS_4                           5                            60
  CLUS_5                          26                            82
  CLUS_6                          14                            52
  CLUS_7                           8                            67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3Q26.2) MUTATED      111      7     21     20     12
  AMP PEAK 10(3Q26.2) WILD-TYPE     53     73     85    113     35
D10V9, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                         111                            53
  CLUS_2                           7                            73
  CLUS_3                          21                            85
  CLUS_4                          20                           113
  CLUS_5                          12                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3Q26.2) MUTATED       37    111     23
  AMP PEAK 10(3Q26.2) WILD-TYPE    181     61    117
D10V10, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                          37                           181
  CLUS_2                         111                            61
  CLUS_3                          23                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3Q26.2) MUTATED       61     18     29     35
  AMP PEAK 10(3Q26.2) WILD-TYPE     55     80     63     57
D10V11, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                          61                            55
  CLUS_2                          18                            80
  CLUS_3                          29                            63
  CLUS_4                          35                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3Q26.2) MUTATED       78     25     40
  AMP PEAK 10(3Q26.2) WILD-TYPE     85    107     63
D10V12, multiclass
        clus
vv       AMP PEAK 10(3Q26.2) MUTATED AMP PEAK 10(3Q26.2) WILD-TYPE
  CLUS_1                          78                            85
  CLUS_2                          25                           107
  CLUS_3                          40                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        1     10      1      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     14      7     13      7
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          10                             7
  CLUS_3                           1                            13
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED        3      8      1      0      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     11      1      6      7     16
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED      147      1     11      5
  AMP PEAK 11(3Q26.2) WILD-TYPE     61    177     88     49
D11V3, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         147                            61
  CLUS_2                           1                           177
  CLUS_3                          11                            88
  CLUS_4                           5                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       85     34     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     69     44    171
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          85                            69
  CLUS_2                          34                            44
  CLUS_3                          22                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED        5      6     12     24     42     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     34     75     40     32     42     46
                               vv
clus                            CLUS_7
  AMP PEAK 11(3Q26.2) MUTATED       17
  AMP PEAK 11(3Q26.2) WILD-TYPE     36
D11V5, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           6                            75
  CLUS_3                          12                            40
  CLUS_4                          24                            32
  CLUS_5                          42                            42
  CLUS_6                          22                            46
  CLUS_7                          17                            36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        8     77     30     13
  AMP PEAK 11(3Q26.2) WILD-TYPE    100    105     63     37
D11V6, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           8                           100
  CLUS_2                          77                           105
  CLUS_3                          30                            63
  CLUS_4                          13                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED      120      6     20     17
  AMP PEAK 11(3Q26.2) WILD-TYPE     68    117     73    116
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         120                            68
  CLUS_2                           6                           117
  CLUS_3                          20                            73
  CLUS_4                          17                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED       92      0     24      5     24     11
  AMP PEAK 11(3Q26.2) WILD-TYPE     31     53     23     60     84     55
                               vv
clus                            CLUS_7
  AMP PEAK 11(3Q26.2) MUTATED        7
  AMP PEAK 11(3Q26.2) WILD-TYPE     68
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          92                            31
  CLUS_2                           0                            53
  CLUS_3                          24                            23
  CLUS_4                           5                            60
  CLUS_5                          24                            84
  CLUS_6                          11                            55
  CLUS_7                           7                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED      106      6     19     18     11
  AMP PEAK 11(3Q26.2) WILD-TYPE     58     74     87    115     36
D11V9, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         106                            58
  CLUS_2                           6                            74
  CLUS_3                          19                            87
  CLUS_4                          18                           115
  CLUS_5                          11                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       35    106     19
  AMP PEAK 11(3Q26.2) WILD-TYPE    183     66    121
D11V10, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          35                           183
  CLUS_2                         106                            66
  CLUS_3                          19                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED       59     15     26     34
  AMP PEAK 11(3Q26.2) WILD-TYPE     57     83     66     58
D11V11, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          59                            57
  CLUS_2                          15                            83
  CLUS_3                          26                            66
  CLUS_4                          34                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       77     19     38
  AMP PEAK 11(3Q26.2) WILD-TYPE     86    113     65
D11V12, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          77                            86
  CLUS_2                          19                           113
  CLUS_3                          38                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4P16.3) MUTATED        1      5      0      0
  AMP PEAK 12(4P16.3) WILD-TYPE     14     12     14      7
D12V1, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           5                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(4P16.3) MUTATED        2      4      0      0      0
  AMP PEAK 12(4P16.3) WILD-TYPE     12      5      7      7     16
D12V2, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4P16.3) MUTATED       49      2      0      1
  AMP PEAK 12(4P16.3) WILD-TYPE    159    176     99     53
D12V3, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          49                           159
  CLUS_2                           2                           176
  CLUS_3                           0                            99
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4P16.3) MUTATED       18     19      6
  AMP PEAK 12(4P16.3) WILD-TYPE    136     59    187
D12V4, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          18                           136
  CLUS_2                          19                            59
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(4P16.3) MUTATED        1      1      2     12     14      6
  AMP PEAK 12(4P16.3) WILD-TYPE     38     80     50     44     70     62
                               vv
clus                            CLUS_7
  AMP PEAK 12(4P16.3) MUTATED        4
  AMP PEAK 12(4P16.3) WILD-TYPE     49
D12V5, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           2                            50
  CLUS_4                          12                            44
  CLUS_5                          14                            70
  CLUS_6                           6                            62
  CLUS_7                           4                            49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4P16.3) MUTATED        1     30      8      1
  AMP PEAK 12(4P16.3) WILD-TYPE    107    152     85     49
D12V6, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          30                           152
  CLUS_3                           8                            85
  CLUS_4                           1                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4P16.3) MUTATED       46      3      0      2
  AMP PEAK 12(4P16.3) WILD-TYPE    142    120     93    131
D12V7, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          46                           142
  CLUS_2                           3                           120
  CLUS_3                           0                            93
  CLUS_4                           2                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(4P16.3) MUTATED       39      0      3      0      8      0
  AMP PEAK 12(4P16.3) WILD-TYPE     84     53     44     65    100     66
                               vv
clus                            CLUS_7
  AMP PEAK 12(4P16.3) MUTATED        1
  AMP PEAK 12(4P16.3) WILD-TYPE     74
D12V8, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          39                            84
  CLUS_2                           0                            53
  CLUS_3                           3                            44
  CLUS_4                           0                            65
  CLUS_5                           8                           100
  CLUS_6                           0                            66
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(4P16.3) MUTATED       39      1      4      4      2
  AMP PEAK 12(4P16.3) WILD-TYPE    125     79    102    129     45
D12V9, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          39                           125
  CLUS_2                           1                            79
  CLUS_3                           4                           102
  CLUS_4                           4                           129
  CLUS_5                           2                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4P16.3) MUTATED        7     39      4
  AMP PEAK 12(4P16.3) WILD-TYPE    211    133    136
D12V10, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                           7                           211
  CLUS_2                          39                           133
  CLUS_3                           4                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(4P16.3) MUTATED       22      5      7      7
  AMP PEAK 12(4P16.3) WILD-TYPE     94     93     85     85
D12V11, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          22                            94
  CLUS_2                           5                            93
  CLUS_3                           7                            85
  CLUS_4                           7                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(4P16.3) MUTATED       27      5      9
  AMP PEAK 12(4P16.3) WILD-TYPE    136    127     94
D12V12, multiclass
        clus
vv       AMP PEAK 12(4P16.3) MUTATED AMP PEAK 12(4P16.3) WILD-TYPE
  CLUS_1                          27                           136
  CLUS_2                           5                           127
  CLUS_3                           9                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(5P15.33) MUTATED        2      5      1      0
  AMP PEAK 13(5P15.33) WILD-TYPE     13     12     13      7
D13V1, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            5                             12
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(5P15.33) MUTATED        2      4      1      1      0
  AMP PEAK 13(5P15.33) WILD-TYPE     12      5      6      6     16
D13V2, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(5P15.33) MUTATED       83      0      3      3
  AMP PEAK 13(5P15.33) WILD-TYPE    125    178     96     51
D13V3, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           83                            125
  CLUS_2                            0                            178
  CLUS_3                            3                             96
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(5P15.33) MUTATED       51     17      8
  AMP PEAK 13(5P15.33) WILD-TYPE    103     61    185
D13V4, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           51                            103
  CLUS_2                           17                             61
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(5P15.33) MUTATED        0      6      5     16     26     12
  AMP PEAK 13(5P15.33) WILD-TYPE     39     75     47     40     58     56
                                vv
clus                             CLUS_7
  AMP PEAK 13(5P15.33) MUTATED        9
  AMP PEAK 13(5P15.33) WILD-TYPE     44
D13V5, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            6                             75
  CLUS_3                            5                             47
  CLUS_4                           16                             40
  CLUS_5                           26                             58
  CLUS_6                           12                             56
  CLUS_7                            9                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(5P15.33) MUTATED        5     50     15      4
  AMP PEAK 13(5P15.33) WILD-TYPE    103    132     78     46
D13V6, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                            5                            103
  CLUS_2                           50                            132
  CLUS_3                           15                             78
  CLUS_4                            4                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(5P15.33) MUTATED       73      7      6      2
  AMP PEAK 13(5P15.33) WILD-TYPE    115    116     87    131
D13V7, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           73                            115
  CLUS_2                            7                            116
  CLUS_3                            6                             87
  CLUS_4                            2                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(5P15.33) MUTATED       54      3     13      2     11      5
  AMP PEAK 13(5P15.33) WILD-TYPE     69     50     34     63     97     61
                                vv
clus                             CLUS_7
  AMP PEAK 13(5P15.33) MUTATED        0
  AMP PEAK 13(5P15.33) WILD-TYPE     75
D13V8, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           54                             69
  CLUS_2                            3                             50
  CLUS_3                           13                             34
  CLUS_4                            2                             63
  CLUS_5                           11                             97
  CLUS_6                            5                             61
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(5P15.33) MUTATED       61      6     10      5      6
  AMP PEAK 13(5P15.33) WILD-TYPE    103     74     96    128     41
D13V9, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           61                            103
  CLUS_2                            6                             74
  CLUS_3                           10                             96
  CLUS_4                            5                            128
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(5P15.33) MUTATED       22     61      5
  AMP PEAK 13(5P15.33) WILD-TYPE    196    111    135
D13V10, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           22                            196
  CLUS_2                           61                            111
  CLUS_3                            5                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(5P15.33) MUTATED       41      3     15     16
  AMP PEAK 13(5P15.33) WILD-TYPE     75     95     77     76
D13V11, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           41                             75
  CLUS_2                            3                             95
  CLUS_3                           15                             77
  CLUS_4                           16                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(5P15.33) MUTATED       48      8     19
  AMP PEAK 13(5P15.33) WILD-TYPE    115    124     84
D13V12, multiclass
        clus
vv       AMP PEAK 13(5P15.33) MUTATED AMP PEAK 13(5P15.33) WILD-TYPE
  CLUS_1                           48                            115
  CLUS_2                            8                            124
  CLUS_3                           19                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5Q35.3) MUTATED        0      3      0      0
  AMP PEAK 14(5Q35.3) WILD-TYPE     15     14     14      7
D14V1, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           3                            14
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5Q35.3) MUTATED        1      2      0      0      0
  AMP PEAK 14(5Q35.3) WILD-TYPE     13      7      7      7     16
D14V2, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5Q35.3) MUTATED       54      0      1      2
  AMP PEAK 14(5Q35.3) WILD-TYPE    154    178     98     52
D14V3, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          54                           154
  CLUS_2                           0                           178
  CLUS_3                           1                            98
  CLUS_4                           2                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5Q35.3) MUTATED       27     16      7
  AMP PEAK 14(5Q35.3) WILD-TYPE    127     62    186
D14V4, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          27                           127
  CLUS_2                          16                            62
  CLUS_3                           7                           186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5Q35.3) MUTATED        1      3      3      7     23      5
  AMP PEAK 14(5Q35.3) WILD-TYPE     38     78     49     49     61     63
                               vv
clus                            CLUS_7
  AMP PEAK 14(5Q35.3) MUTATED        4
  AMP PEAK 14(5Q35.3) WILD-TYPE     49
D14V5, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           3                            78
  CLUS_3                           3                            49
  CLUS_4                           7                            49
  CLUS_5                          23                            61
  CLUS_6                           5                            63
  CLUS_7                           4                            49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5Q35.3) MUTATED        4     33      7      2
  AMP PEAK 14(5Q35.3) WILD-TYPE    104    149     86     48
D14V6, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                          33                           149
  CLUS_3                           7                            86
  CLUS_4                           2                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5Q35.3) MUTATED       45      3      6      3
  AMP PEAK 14(5Q35.3) WILD-TYPE    143    120     87    130
D14V7, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          45                           143
  CLUS_2                           3                           120
  CLUS_3                           6                            87
  CLUS_4                           3                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5Q35.3) MUTATED       35      2      9      1      7      2
  AMP PEAK 14(5Q35.3) WILD-TYPE     88     51     38     64    101     64
                               vv
clus                            CLUS_7
  AMP PEAK 14(5Q35.3) MUTATED        1
  AMP PEAK 14(5Q35.3) WILD-TYPE     74
D14V8, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          35                            88
  CLUS_2                           2                            51
  CLUS_3                           9                            38
  CLUS_4                           1                            64
  CLUS_5                           7                           101
  CLUS_6                           2                            64
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5Q35.3) MUTATED       40      5      5      4      2
  AMP PEAK 14(5Q35.3) WILD-TYPE    124     75    101    129     45
D14V9, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          40                           124
  CLUS_2                           5                            75
  CLUS_3                           5                           101
  CLUS_4                           4                           129
  CLUS_5                           2                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5Q35.3) MUTATED       10     42      4
  AMP PEAK 14(5Q35.3) WILD-TYPE    208    130    136
D14V10, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          10                           208
  CLUS_2                          42                           130
  CLUS_3                           4                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5Q35.3) MUTATED       18      5     12     13
  AMP PEAK 14(5Q35.3) WILD-TYPE     98     93     80     79
D14V11, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          18                            98
  CLUS_2                           5                            93
  CLUS_3                          12                            80
  CLUS_4                          13                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5Q35.3) MUTATED       27      5     16
  AMP PEAK 14(5Q35.3) WILD-TYPE    136    127     87
D14V12, multiclass
        clus
vv       AMP PEAK 14(5Q35.3) MUTATED AMP PEAK 14(5Q35.3) WILD-TYPE
  CLUS_1                          27                           136
  CLUS_2                           5                           127
  CLUS_3                          16                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(6P24.2) MUTATED        1      9      2      0
  AMP PEAK 15(6P24.2) WILD-TYPE     14      8     12      7
D15V1, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           9                             8
  CLUS_3                           2                            12
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(6P24.2) MUTATED        3      7      0      0      2
  AMP PEAK 15(6P24.2) WILD-TYPE     11      2      7      7     14
D15V2, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(6P24.2) MUTATED      105      4      5      3
  AMP PEAK 15(6P24.2) WILD-TYPE    103    174     94     51
D15V3, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                         105                           103
  CLUS_2                           4                           174
  CLUS_3                           5                            94
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(6P24.2) MUTATED       61     24     15
  AMP PEAK 15(6P24.2) WILD-TYPE     93     54    178
D15V4, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          61                            93
  CLUS_2                          24                            54
  CLUS_3                          15                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(6P24.2) MUTATED        2      6      5     22     29     11
  AMP PEAK 15(6P24.2) WILD-TYPE     37     75     47     34     55     57
                               vv
clus                            CLUS_7
  AMP PEAK 15(6P24.2) MUTATED       11
  AMP PEAK 15(6P24.2) WILD-TYPE     42
D15V5, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           6                            75
  CLUS_3                           5                            47
  CLUS_4                          22                            34
  CLUS_5                          29                            55
  CLUS_6                          11                            57
  CLUS_7                          11                            42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(6P24.2) MUTATED        5     57     18      6
  AMP PEAK 15(6P24.2) WILD-TYPE    103    125     75     44
D15V6, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                          57                           125
  CLUS_3                          18                            75
  CLUS_4                           6                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(6P24.2) MUTATED       89      6      7     15
  AMP PEAK 15(6P24.2) WILD-TYPE     99    117     86    118
D15V7, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          89                            99
  CLUS_2                           6                           117
  CLUS_3                           7                            86
  CLUS_4                          15                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(6P24.2) MUTATED       68      0     11      5     19      8
  AMP PEAK 15(6P24.2) WILD-TYPE     55     53     36     60     89     58
                               vv
clus                            CLUS_7
  AMP PEAK 15(6P24.2) MUTATED        6
  AMP PEAK 15(6P24.2) WILD-TYPE     69
D15V8, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          68                            55
  CLUS_2                           0                            53
  CLUS_3                          11                            36
  CLUS_4                           5                            60
  CLUS_5                          19                            89
  CLUS_6                           8                            58
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(6P24.2) MUTATED       75      6     11     12     10
  AMP PEAK 15(6P24.2) WILD-TYPE     89     74     95    121     37
D15V9, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          75                            89
  CLUS_2                           6                            74
  CLUS_3                          11                            95
  CLUS_4                          12                           121
  CLUS_5                          10                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(6P24.2) MUTATED       25     77     12
  AMP PEAK 15(6P24.2) WILD-TYPE    193     95    128
D15V10, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          25                           193
  CLUS_2                          77                            95
  CLUS_3                          12                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(6P24.2) MUTATED       49     10     20     17
  AMP PEAK 15(6P24.2) WILD-TYPE     67     88     72     75
D15V11, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          49                            67
  CLUS_2                          10                            88
  CLUS_3                          20                            72
  CLUS_4                          17                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(6P24.2) MUTATED       55     15     26
  AMP PEAK 15(6P24.2) WILD-TYPE    108    117     77
D15V12, multiclass
        clus
vv       AMP PEAK 15(6P24.2) MUTATED AMP PEAK 15(6P24.2) WILD-TYPE
  CLUS_1                          55                           108
  CLUS_2                          15                           117
  CLUS_3                          26                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6Q25.1) MUTATED        0      2      2      0
  AMP PEAK 16(6Q25.1) WILD-TYPE     15     15     12      7
D16V1, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           2                            15
  CLUS_3                           2                            12
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6Q25.1) MUTATED        1      1      0      0      2
  AMP PEAK 16(6Q25.1) WILD-TYPE     13      8      7      7     14
D16V2, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6Q25.1) MUTATED       78      3      6      1
  AMP PEAK 16(6Q25.1) WILD-TYPE    130    175     93     53
D16V3, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          78                           130
  CLUS_2                           3                           175
  CLUS_3                           6                            93
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6Q25.1) MUTATED       51     12     16
  AMP PEAK 16(6Q25.1) WILD-TYPE    103     66    177
D16V4, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          51                           103
  CLUS_2                          12                            66
  CLUS_3                          16                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6Q25.1) MUTATED        3      5      6     11     24     11
  AMP PEAK 16(6Q25.1) WILD-TYPE     36     76     46     45     60     57
                               vv
clus                            CLUS_7
  AMP PEAK 16(6Q25.1) MUTATED        7
  AMP PEAK 16(6Q25.1) WILD-TYPE     46
D16V5, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           5                            76
  CLUS_3                           6                            46
  CLUS_4                          11                            45
  CLUS_5                          24                            60
  CLUS_6                          11                            57
  CLUS_7                           7                            46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6Q25.1) MUTATED        4     41     17      5
  AMP PEAK 16(6Q25.1) WILD-TYPE    104    141     76     45
D16V6, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                          41                           141
  CLUS_3                          17                            76
  CLUS_4                           5                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6Q25.1) MUTATED       56      7      7     17
  AMP PEAK 16(6Q25.1) WILD-TYPE    132    116     86    116
D16V7, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          56                           132
  CLUS_2                           7                           116
  CLUS_3                           7                            86
  CLUS_4                          17                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6Q25.1) MUTATED       40      0      9      6     15     11
  AMP PEAK 16(6Q25.1) WILD-TYPE     83     53     38     59     93     55
                               vv
clus                            CLUS_7
  AMP PEAK 16(6Q25.1) MUTATED        6
  AMP PEAK 16(6Q25.1) WILD-TYPE     69
D16V8, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          40                            83
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           6                            59
  CLUS_5                          15                            93
  CLUS_6                          11                            55
  CLUS_7                           6                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6Q25.1) MUTATED       48      9     10     12      9
  AMP PEAK 16(6Q25.1) WILD-TYPE    116     71     96    121     38
D16V9, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          48                           116
  CLUS_2                           9                            71
  CLUS_3                          10                            96
  CLUS_4                          12                           121
  CLUS_5                           9                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6Q25.1) MUTATED       26     50     12
  AMP PEAK 16(6Q25.1) WILD-TYPE    192    122    128
D16V10, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          26                           192
  CLUS_2                          50                           122
  CLUS_3                          12                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6Q25.1) MUTATED       32     10     15     19
  AMP PEAK 16(6Q25.1) WILD-TYPE     84     88     77     73
D16V11, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          32                            84
  CLUS_2                          10                            88
  CLUS_3                          15                            77
  CLUS_4                          19                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6Q25.1) MUTATED       41     16     19
  AMP PEAK 16(6Q25.1) WILD-TYPE    122    116     84
D16V12, multiclass
        clus
vv       AMP PEAK 16(6Q25.1) MUTATED AMP PEAK 16(6Q25.1) WILD-TYPE
  CLUS_1                          41                           122
  CLUS_2                          16                           116
  CLUS_3                          19                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(7Q31.2) MUTATED        1      4      3      1
  AMP PEAK 17(7Q31.2) WILD-TYPE     14     13     11      6
D17V1, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           4                            13
  CLUS_3                           3                            11
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(7Q31.2) MUTATED        1      3      2      1      2
  AMP PEAK 17(7Q31.2) WILD-TYPE     13      6      5      6     14
D17V2, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           1                             6
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(7Q31.2) MUTATED       62      4     18      9
  AMP PEAK 17(7Q31.2) WILD-TYPE    146    174     81     45
D17V3, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          62                           146
  CLUS_2                           4                           174
  CLUS_3                          18                            81
  CLUS_4                           9                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(7Q31.2) MUTATED       42     10     22
  AMP PEAK 17(7Q31.2) WILD-TYPE    112     68    171
D17V4, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          42                           112
  CLUS_2                          10                            68
  CLUS_3                          22                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(7Q31.2) MUTATED        2     10      6     12     16     11
  AMP PEAK 17(7Q31.2) WILD-TYPE     37     71     46     44     68     57
                               vv
clus                            CLUS_7
  AMP PEAK 17(7Q31.2) MUTATED       13
  AMP PEAK 17(7Q31.2) WILD-TYPE     40
D17V5, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                          10                            71
  CLUS_3                           6                            46
  CLUS_4                          12                            44
  CLUS_5                          16                            68
  CLUS_6                          11                            57
  CLUS_7                          13                            40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(7Q31.2) MUTATED        8     44     12      6
  AMP PEAK 17(7Q31.2) WILD-TYPE    100    138     81     44
D17V6, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                           8                           100
  CLUS_2                          44                           138
  CLUS_3                          12                            81
  CLUS_4                           6                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(7Q31.2) MUTATED       50     15     12     16
  AMP PEAK 17(7Q31.2) WILD-TYPE    138    108     81    117
D17V7, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          50                           138
  CLUS_2                          15                           108
  CLUS_3                          12                            81
  CLUS_4                          16                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(7Q31.2) MUTATED       34      8     13      2     19     10
  AMP PEAK 17(7Q31.2) WILD-TYPE     89     45     34     63     89     56
                               vv
clus                            CLUS_7
  AMP PEAK 17(7Q31.2) MUTATED        7
  AMP PEAK 17(7Q31.2) WILD-TYPE     68
D17V8, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          34                            89
  CLUS_2                           8                            45
  CLUS_3                          13                            34
  CLUS_4                           2                            63
  CLUS_5                          19                            89
  CLUS_6                          10                            56
  CLUS_7                           7                            68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(7Q31.2) MUTATED       46     15     11     15      6
  AMP PEAK 17(7Q31.2) WILD-TYPE    118     65     95    118     41
D17V9, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          46                           118
  CLUS_2                          15                            65
  CLUS_3                          11                            95
  CLUS_4                          15                           118
  CLUS_5                           6                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(7Q31.2) MUTATED       34     43     16
  AMP PEAK 17(7Q31.2) WILD-TYPE    184    129    124
D17V10, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          34                           184
  CLUS_2                          43                           129
  CLUS_3                          16                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(7Q31.2) MUTATED       32      8     18     14
  AMP PEAK 17(7Q31.2) WILD-TYPE     84     90     74     78
D17V11, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          32                            84
  CLUS_2                           8                            90
  CLUS_3                          18                            74
  CLUS_4                          14                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(7Q31.2) MUTATED       38     19     15
  AMP PEAK 17(7Q31.2) WILD-TYPE    125    113     88
D17V12, multiclass
        clus
vv       AMP PEAK 17(7Q31.2) MUTATED AMP PEAK 17(7Q31.2) WILD-TYPE
  CLUS_1                          38                           125
  CLUS_2                          19                           113
  CLUS_3                          15                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(8P11.22) MUTATED        1      6      2      0
  AMP PEAK 18(8P11.22) WILD-TYPE     14     11     12      7
D18V1, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            6                             11
  CLUS_3                            2                             12
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(8P11.22) MUTATED        4      3      0      0      2
  AMP PEAK 18(8P11.22) WILD-TYPE     10      6      7      7     14
D18V2, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(8P11.22) MUTATED       74      7     41      4
  AMP PEAK 18(8P11.22) WILD-TYPE    134    171     58     50
D18V3, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           74                            134
  CLUS_2                            7                            171
  CLUS_3                           41                             58
  CLUS_4                            4                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(8P11.22) MUTATED       37     19     50
  AMP PEAK 18(8P11.22) WILD-TYPE    117     59    143
D18V4, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           37                            117
  CLUS_2                           19                             59
  CLUS_3                           50                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(8P11.22) MUTATED        8     13     13     16     25     14
  AMP PEAK 18(8P11.22) WILD-TYPE     31     68     39     40     59     54
                                vv
clus                             CLUS_7
  AMP PEAK 18(8P11.22) MUTATED       13
  AMP PEAK 18(8P11.22) WILD-TYPE     40
D18V5, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           13                             68
  CLUS_3                           13                             39
  CLUS_4                           16                             40
  CLUS_5                           25                             59
  CLUS_6                           14                             54
  CLUS_7                           13                             40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(8P11.22) MUTATED       15     37     37     13
  AMP PEAK 18(8P11.22) WILD-TYPE     93    145     56     37
D18V6, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           15                             93
  CLUS_2                           37                            145
  CLUS_3                           37                             56
  CLUS_4                           13                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(8P11.22) MUTATED       53     28     14     31
  AMP PEAK 18(8P11.22) WILD-TYPE    135     95     79    102
D18V7, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           53                            135
  CLUS_2                           28                             95
  CLUS_3                           14                             79
  CLUS_4                           31                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(8P11.22) MUTATED       30      9      9      9     36     22
  AMP PEAK 18(8P11.22) WILD-TYPE     93     44     38     56     72     44
                                vv
clus                             CLUS_7
  AMP PEAK 18(8P11.22) MUTATED       11
  AMP PEAK 18(8P11.22) WILD-TYPE     64
D18V8, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           30                             93
  CLUS_2                            9                             44
  CLUS_3                            9                             38
  CLUS_4                            9                             56
  CLUS_5                           36                             72
  CLUS_6                           22                             44
  CLUS_7                           11                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(8P11.22) MUTATED       47     23     15     31      8
  AMP PEAK 18(8P11.22) WILD-TYPE    117     57     91    102     39
D18V9, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           47                            117
  CLUS_2                           23                             57
  CLUS_3                           15                             91
  CLUS_4                           31                            102
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(8P11.22) MUTATED       54     38     32
  AMP PEAK 18(8P11.22) WILD-TYPE    164    134    108
D18V10, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           54                            164
  CLUS_2                           38                            134
  CLUS_3                           32                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(8P11.22) MUTATED       33     24     22     20
  AMP PEAK 18(8P11.22) WILD-TYPE     83     74     70     72
D18V11, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           33                             83
  CLUS_2                           24                             74
  CLUS_3                           22                             70
  CLUS_4                           20                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(8P11.22) MUTATED       46     35     18
  AMP PEAK 18(8P11.22) WILD-TYPE    117     97     85
D18V12, multiclass
        clus
vv       AMP PEAK 18(8P11.22) MUTATED AMP PEAK 18(8P11.22) WILD-TYPE
  CLUS_1                           46                            117
  CLUS_2                           35                             97
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED        1      8      2      0
  AMP PEAK 19(8P11.21) WILD-TYPE     14      9     12      7
D19V1, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            8                              9
  CLUS_3                            2                             12
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(8P11.21) MUTATED        4      5      0      0      2
  AMP PEAK 19(8P11.21) WILD-TYPE     10      4      7      7     14
D19V2, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED      109      6     41      6
  AMP PEAK 19(8P11.21) WILD-TYPE     99    172     58     48
D19V3, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                          109                             99
  CLUS_2                            6                            172
  CLUS_3                           41                             58
  CLUS_4                            6                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       62     27     49
  AMP PEAK 19(8P11.21) WILD-TYPE     92     51    144
D19V4, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           62                             92
  CLUS_2                           27                             51
  CLUS_3                           49                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(8P11.21) MUTATED        8     13     13     23     37     18
  AMP PEAK 19(8P11.21) WILD-TYPE     31     68     39     33     47     50
                                vv
clus                             CLUS_7
  AMP PEAK 19(8P11.21) MUTATED       17
  AMP PEAK 19(8P11.21) WILD-TYPE     36
D19V5, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           13                             68
  CLUS_3                           13                             39
  CLUS_4                           23                             33
  CLUS_5                           37                             47
  CLUS_6                           18                             50
  CLUS_7                           17                             36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED       15     58     39     17
  AMP PEAK 19(8P11.21) WILD-TYPE     93    124     54     33
D19V6, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           15                             93
  CLUS_2                           58                            124
  CLUS_3                           39                             54
  CLUS_4                           17                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED       86     28     18     30
  AMP PEAK 19(8P11.21) WILD-TYPE    102     95     75    103
D19V7, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           86                            102
  CLUS_2                           28                             95
  CLUS_3                           18                             75
  CLUS_4                           30                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(8P11.21) MUTATED       59      9     19     10     34     20
  AMP PEAK 19(8P11.21) WILD-TYPE     64     44     28     55     74     46
                                vv
clus                             CLUS_7
  AMP PEAK 19(8P11.21) MUTATED       11
  AMP PEAK 19(8P11.21) WILD-TYPE     64
D19V8, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           59                             64
  CLUS_2                            9                             44
  CLUS_3                           19                             28
  CLUS_4                           10                             55
  CLUS_5                           34                             74
  CLUS_6                           20                             46
  CLUS_7                           11                             64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(8P11.21) MUTATED       79     22     17     30     11
  AMP PEAK 19(8P11.21) WILD-TYPE     85     58     89    103     36
D19V9, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           79                             85
  CLUS_2                           22                             58
  CLUS_3                           17                             89
  CLUS_4                           30                            103
  CLUS_5                           11                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       54     74     31
  AMP PEAK 19(8P11.21) WILD-TYPE    164     98    109
D19V10, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           54                            164
  CLUS_2                           74                             98
  CLUS_3                           31                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED       55     23     27     26
  AMP PEAK 19(8P11.21) WILD-TYPE     61     75     65     66
D19V11, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           55                             61
  CLUS_2                           23                             75
  CLUS_3                           27                             65
  CLUS_4                           26                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       69     33     29
  AMP PEAK 19(8P11.21) WILD-TYPE     94     99     74
D19V12, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           69                             94
  CLUS_2                           33                             99
  CLUS_3                           29                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED        1      8      3      0
  AMP PEAK 20(8Q24.21) WILD-TYPE     14      9     11      7
D20V1, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            8                              9
  CLUS_3                            3                             11
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8Q24.21) MUTATED        4      5      1      0      2
  AMP PEAK 20(8Q24.21) WILD-TYPE     10      4      6      7     14
D20V2, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED      151      8     44      6
  AMP PEAK 20(8Q24.21) WILD-TYPE     57    170     55     48
D20V3, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          151                             57
  CLUS_2                            8                            170
  CLUS_3                           44                             55
  CLUS_4                            6                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       88     39     54
  AMP PEAK 20(8Q24.21) WILD-TYPE     66     39    139
D20V4, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           88                             66
  CLUS_2                           39                             39
  CLUS_3                           54                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8Q24.21) MUTATED        9     14     15     28     47     25
  AMP PEAK 20(8Q24.21) WILD-TYPE     30     67     37     28     37     43
                                vv
clus                             CLUS_7
  AMP PEAK 20(8Q24.21) MUTATED       25
  AMP PEAK 20(8Q24.21) WILD-TYPE     28
D20V5, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           14                             67
  CLUS_3                           15                             37
  CLUS_4                           28                             28
  CLUS_5                           47                             37
  CLUS_6                           25                             43
  CLUS_7                           25                             28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED       16     82     44     21
  AMP PEAK 20(8Q24.21) WILD-TYPE     92    100     49     29
D20V6, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           16                             92
  CLUS_2                           82                            100
  CLUS_3                           44                             49
  CLUS_4                           21                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED      119     31     24     34
  AMP PEAK 20(8Q24.21) WILD-TYPE     69     92     69     99
D20V7, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          119                             69
  CLUS_2                           31                             92
  CLUS_3                           24                             69
  CLUS_4                           34                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8Q24.21) MUTATED       86     10     27      8     39     26
  AMP PEAK 20(8Q24.21) WILD-TYPE     37     43     20     57     69     40
                                vv
clus                             CLUS_7
  AMP PEAK 20(8Q24.21) MUTATED       12
  AMP PEAK 20(8Q24.21) WILD-TYPE     63
D20V8, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           86                             37
  CLUS_2                           10                             43
  CLUS_3                           27                             20
  CLUS_4                            8                             57
  CLUS_5                           39                             69
  CLUS_6                           26                             40
  CLUS_7                           12                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8Q24.21) MUTATED      110     23     22     35     16
  AMP PEAK 20(8Q24.21) WILD-TYPE     54     57     84     98     31
D20V9, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          110                             54
  CLUS_2                           23                             57
  CLUS_3                           22                             84
  CLUS_4                           35                             98
  CLUS_5                           16                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       62    109     35
  AMP PEAK 20(8Q24.21) WILD-TYPE    156     63    105
D20V10, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           62                            156
  CLUS_2                          109                             63
  CLUS_3                           35                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED       70     26     35     38
  AMP PEAK 20(8Q24.21) WILD-TYPE     46     72     57     54
D20V11, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           70                             46
  CLUS_2                           26                             72
  CLUS_3                           35                             57
  CLUS_4                           38                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       90     35     44
  AMP PEAK 20(8Q24.21) WILD-TYPE     73     97     59
D20V12, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           90                             73
  CLUS_2                           35                             97
  CLUS_3                           44                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED        1      9      2      0
  AMP PEAK 21(8Q24.21) WILD-TYPE     14      8     12      7
D21V1, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            9                              8
  CLUS_3                            2                             12
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8Q24.21) MUTATED        4      6      0      0      2
  AMP PEAK 21(8Q24.21) WILD-TYPE     10      3      7      7     14
D21V2, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED      152     13     43      7
  AMP PEAK 21(8Q24.21) WILD-TYPE     56    165     56     47
D21V3, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          152                             56
  CLUS_2                           13                            165
  CLUS_3                           43                             56
  CLUS_4                            7                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       87     39     59
  AMP PEAK 21(8Q24.21) WILD-TYPE     67     39    134
D21V4, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           87                             67
  CLUS_2                           39                             39
  CLUS_3                           59                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8Q24.21) MUTATED        9     13     16     28     51     25
  AMP PEAK 21(8Q24.21) WILD-TYPE     30     68     36     28     33     43
                                vv
clus                             CLUS_7
  AMP PEAK 21(8Q24.21) MUTATED       28
  AMP PEAK 21(8Q24.21) WILD-TYPE     25
D21V5, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           13                             68
  CLUS_3                           16                             36
  CLUS_4                           28                             28
  CLUS_5                           51                             33
  CLUS_6                           25                             43
  CLUS_7                           28                             25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED       16     85     45     24
  AMP PEAK 21(8Q24.21) WILD-TYPE     92     97     48     26
D21V6, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           16                             92
  CLUS_2                           85                             97
  CLUS_3                           45                             48
  CLUS_4                           24                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED      124     32     23     35
  AMP PEAK 21(8Q24.21) WILD-TYPE     64     91     70     98
D21V7, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          124                             64
  CLUS_2                           32                             91
  CLUS_3                           23                             70
  CLUS_4                           35                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8Q24.21) MUTATED       91     11     25      9     39     25
  AMP PEAK 21(8Q24.21) WILD-TYPE     32     42     22     56     69     41
                                vv
clus                             CLUS_7
  AMP PEAK 21(8Q24.21) MUTATED       14
  AMP PEAK 21(8Q24.21) WILD-TYPE     61
D21V8, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           91                             32
  CLUS_2                           11                             42
  CLUS_3                           25                             22
  CLUS_4                            9                             56
  CLUS_5                           39                             69
  CLUS_6                           25                             41
  CLUS_7                           14                             61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8Q24.21) MUTATED      112     24     23     36     16
  AMP PEAK 21(8Q24.21) WILD-TYPE     52     56     83     97     31
D21V9, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          112                             52
  CLUS_2                           24                             56
  CLUS_3                           23                             83
  CLUS_4                           36                             97
  CLUS_5                           16                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       64    109     38
  AMP PEAK 21(8Q24.21) WILD-TYPE    154     63    102
D21V10, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           64                            154
  CLUS_2                          109                             63
  CLUS_3                           38                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED       72     29     34     39
  AMP PEAK 21(8Q24.21) WILD-TYPE     44     69     58     53
D21V11, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           72                             44
  CLUS_2                           29                             69
  CLUS_3                           34                             58
  CLUS_4                           39                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       94     39     41
  AMP PEAK 21(8Q24.21) WILD-TYPE     69     93     62
D21V12, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           94                             69
  CLUS_2                           39                             93
  CLUS_3                           41                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED        3      4      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE     12     13     14      7
D22V1, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           4                            13
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(9P24.2) MUTATED        4      2      1      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE     10      7      6      7     16
D22V2, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                             7
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED       60      4      1      0
  AMP PEAK 22(9P24.2) WILD-TYPE    148    174     98     54
D22V3, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          60                           148
  CLUS_2                           4                           174
  CLUS_3                           1                            98
  CLUS_4                           0                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       35     12      7
  AMP PEAK 22(9P24.2) WILD-TYPE    119     66    186
D22V4, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          35                           119
  CLUS_2                          12                            66
  CLUS_3                           7                           186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(9P24.2) MUTATED        1      1      4     16     23      7
  AMP PEAK 22(9P24.2) WILD-TYPE     38     80     48     40     61     61
                               vv
clus                            CLUS_7
  AMP PEAK 22(9P24.2) MUTATED        3
  AMP PEAK 22(9P24.2) WILD-TYPE     50
D22V5, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           4                            48
  CLUS_4                          16                            40
  CLUS_5                          23                            61
  CLUS_6                           7                            61
  CLUS_7                           3                            50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED        1     38     15      1
  AMP PEAK 22(9P24.2) WILD-TYPE    107    144     78     49
D22V6, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          38                           144
  CLUS_3                          15                            78
  CLUS_4                           1                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED       53      4      5      3
  AMP PEAK 22(9P24.2) WILD-TYPE    135    119     88    130
D22V7, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          53                           135
  CLUS_2                           4                           119
  CLUS_3                           5                            88
  CLUS_4                           3                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(9P24.2) MUTATED       41      0      6      2     12      4
  AMP PEAK 22(9P24.2) WILD-TYPE     82     53     41     63     96     62
                               vv
clus                            CLUS_7
  AMP PEAK 22(9P24.2) MUTATED        0
  AMP PEAK 22(9P24.2) WILD-TYPE     75
D22V8, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          41                            82
  CLUS_2                           0                            53
  CLUS_3                           6                            41
  CLUS_4                           2                            63
  CLUS_5                          12                            96
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(9P24.2) MUTATED       49      5      7      2      1
  AMP PEAK 22(9P24.2) WILD-TYPE    115     75     99    131     46
D22V9, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          49                           115
  CLUS_2                           5                            75
  CLUS_3                           7                            99
  CLUS_4                           2                           131
  CLUS_5                           1                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       18     43      3
  AMP PEAK 22(9P24.2) WILD-TYPE    200    129    137
D22V10, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          18                           200
  CLUS_2                          43                           129
  CLUS_3                           3                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED       28      5      9     10
  AMP PEAK 22(9P24.2) WILD-TYPE     88     93     83     82
D22V11, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          28                            88
  CLUS_2                           5                            93
  CLUS_3                           9                            83
  CLUS_4                          10                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       32      6     14
  AMP PEAK 22(9P24.2) WILD-TYPE    131    126     89
D22V12, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          32                           131
  CLUS_2                           6                           126
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED        0      4      2      0
  AMP PEAK 23(9Q34.3) WILD-TYPE     15     13     12      7
D23V1, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           4                            13
  CLUS_3                           2                            12
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(9Q34.3) MUTATED        0      4      1      0      1
  AMP PEAK 23(9Q34.3) WILD-TYPE     14      5      6      7     15
D23V2, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           1                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED       36      1      1      1
  AMP PEAK 23(9Q34.3) WILD-TYPE    172    177     98     53
D23V3, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          36                           172
  CLUS_2                           1                           177
  CLUS_3                           1                            98
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       18     10      2
  AMP PEAK 23(9Q34.3) WILD-TYPE    136     68    191
D23V4, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          18                           136
  CLUS_2                          10                            68
  CLUS_3                           2                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(9Q34.3) MUTATED        1      1      1      6     12      6
  AMP PEAK 23(9Q34.3) WILD-TYPE     38     80     51     50     72     62
                               vv
clus                            CLUS_7
  AMP PEAK 23(9Q34.3) MUTATED        5
  AMP PEAK 23(9Q34.3) WILD-TYPE     48
D23V5, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           1                            51
  CLUS_4                           6                            50
  CLUS_5                          12                            72
  CLUS_6                           6                            62
  CLUS_7                           5                            48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED        1     22      6      3
  AMP PEAK 23(9Q34.3) WILD-TYPE    107    160     87     47
D23V6, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          22                           160
  CLUS_3                           6                            87
  CLUS_4                           3                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED       33      3      1      1
  AMP PEAK 23(9Q34.3) WILD-TYPE    155    120     92    132
D23V7, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          33                           155
  CLUS_2                           3                           120
  CLUS_3                           1                            92
  CLUS_4                           1                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(9Q34.3) MUTATED       30      2      2      0      2      2
  AMP PEAK 23(9Q34.3) WILD-TYPE     93     51     45     65    106     64
                               vv
clus                            CLUS_7
  AMP PEAK 23(9Q34.3) MUTATED        0
  AMP PEAK 23(9Q34.3) WILD-TYPE     75
D23V8, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          30                            93
  CLUS_2                           2                            51
  CLUS_3                           2                            45
  CLUS_4                           0                            65
  CLUS_5                           2                           106
  CLUS_6                           2                            64
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(9Q34.3) MUTATED       24      3      4      2      2
  AMP PEAK 23(9Q34.3) WILD-TYPE    140     77    102    131     45
D23V9, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          24                           140
  CLUS_2                           3                            77
  CLUS_3                           4                           102
  CLUS_4                           2                           131
  CLUS_5                           2                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        7     26      2
  AMP PEAK 23(9Q34.3) WILD-TYPE    211    146    138
D23V10, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           7                           211
  CLUS_2                          26                           146
  CLUS_3                           2                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED       14      3      8      5
  AMP PEAK 23(9Q34.3) WILD-TYPE    102     95     84     87
D23V11, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          14                           102
  CLUS_2                           3                            95
  CLUS_3                           8                            84
  CLUS_4                           5                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       18      3      9
  AMP PEAK 23(9Q34.3) WILD-TYPE    145    129     94
D23V12, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          18                           145
  CLUS_2                           3                           129
  CLUS_3                           9                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED        2      7      9      1
  AMP PEAK 24(10Q22.2) WILD-TYPE     13     10      5      6
D24V1, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            7                             10
  CLUS_3                            9                              5
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(10Q22.2) MUTATED        4      5      2      0      8
  AMP PEAK 24(10Q22.2) WILD-TYPE     10      4      5      7      8
D24V2, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            8                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED       80     25     26     12
  AMP PEAK 24(10Q22.2) WILD-TYPE    128    153     73     42
D24V3, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           80                            128
  CLUS_2                           25                            153
  CLUS_3                           26                             73
  CLUS_4                           12                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       39     22     48
  AMP PEAK 24(10Q22.2) WILD-TYPE    115     56    145
D24V4, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           39                            115
  CLUS_2                           22                             56
  CLUS_3                           48                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(10Q22.2) MUTATED        6     26      8     14     28     19
  AMP PEAK 24(10Q22.2) WILD-TYPE     33     55     44     42     56     49
                                vv
clus                             CLUS_7
  AMP PEAK 24(10Q22.2) MUTATED       17
  AMP PEAK 24(10Q22.2) WILD-TYPE     36
D24V5, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           26                             55
  CLUS_3                            8                             44
  CLUS_4                           14                             42
  CLUS_5                           28                             56
  CLUS_6                           19                             49
  CLUS_7                           17                             36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED       26     57     20     15
  AMP PEAK 24(10Q22.2) WILD-TYPE     82    125     73     35
D24V6, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           26                             82
  CLUS_2                           57                            125
  CLUS_3                           20                             73
  CLUS_4                           15                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED       67     30     10     35
  AMP PEAK 24(10Q22.2) WILD-TYPE    121     93     83     98
D24V7, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           67                            121
  CLUS_2                           30                             93
  CLUS_3                           10                             83
  CLUS_4                           35                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(10Q22.2) MUTATED       49     15     10     10     22     21
  AMP PEAK 24(10Q22.2) WILD-TYPE     74     38     37     55     86     45
                                vv
clus                             CLUS_7
  AMP PEAK 24(10Q22.2) MUTATED       15
  AMP PEAK 24(10Q22.2) WILD-TYPE     60
D24V8, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           49                             74
  CLUS_2                           15                             38
  CLUS_3                           10                             37
  CLUS_4                           10                             55
  CLUS_5                           22                             86
  CLUS_6                           21                             45
  CLUS_7                           15                             60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(10Q22.2) MUTATED       62     14     18     36     11
  AMP PEAK 24(10Q22.2) WILD-TYPE    102     66     88     97     36
D24V9, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           62                            102
  CLUS_2                           14                             66
  CLUS_3                           18                             88
  CLUS_4                           36                             97
  CLUS_5                           11                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       49     53     39
  AMP PEAK 24(10Q22.2) WILD-TYPE    169    119    101
D24V10, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           49                            169
  CLUS_2                           53                            119
  CLUS_3                           39                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED       37     31     22      8
  AMP PEAK 24(10Q22.2) WILD-TYPE     79     67     70     84
D24V11, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           37                             79
  CLUS_2                           31                             67
  CLUS_3                           22                             70
  CLUS_4                            8                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       42     37     19
  AMP PEAK 24(10Q22.2) WILD-TYPE    121     95     84
D24V12, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           42                            121
  CLUS_2                           37                             95
  CLUS_3                           19                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED        0      6      0      0
  AMP PEAK 25(11P11.2) WILD-TYPE     15     11     14      7
D25V1, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            6                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11P11.2) MUTATED        2      4      0      0      0
  AMP PEAK 25(11P11.2) WILD-TYPE     12      5      7      7     16
D25V2, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED       48      0      3      1
  AMP PEAK 25(11P11.2) WILD-TYPE    160    178     96     53
D25V3, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           48                            160
  CLUS_2                            0                            178
  CLUS_3                            3                             96
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       26     12      6
  AMP PEAK 25(11P11.2) WILD-TYPE    128     66    187
D25V4, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           26                            128
  CLUS_2                           12                             66
  CLUS_3                            6                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(11P11.2) MUTATED        2      1      3     12     13      6
  AMP PEAK 25(11P11.2) WILD-TYPE     37     80     49     44     71     62
                                vv
clus                             CLUS_7
  AMP PEAK 25(11P11.2) MUTATED        6
  AMP PEAK 25(11P11.2) WILD-TYPE     47
D25V5, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            1                             80
  CLUS_3                            3                             49
  CLUS_4                           12                             44
  CLUS_5                           13                             71
  CLUS_6                            6                             62
  CLUS_7                            6                             47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED        3     26     10      4
  AMP PEAK 25(11P11.2) WILD-TYPE    105    156     83     46
D25V6, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           26                            156
  CLUS_3                           10                             83
  CLUS_4                            4                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED       43      2      1      6
  AMP PEAK 25(11P11.2) WILD-TYPE    145    121     92    127
D25V7, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           43                            145
  CLUS_2                            2                            121
  CLUS_3                            1                             92
  CLUS_4                            6                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(11P11.2) MUTATED       35      1      3      2      6      4
  AMP PEAK 25(11P11.2) WILD-TYPE     88     52     44     63    102     62
                                vv
clus                             CLUS_7
  AMP PEAK 25(11P11.2) MUTATED        1
  AMP PEAK 25(11P11.2) WILD-TYPE     74
D25V8, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           35                             88
  CLUS_2                            1                             52
  CLUS_3                            3                             44
  CLUS_4                            2                             63
  CLUS_5                            6                            102
  CLUS_6                            4                             62
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11P11.2) MUTATED       34      3      3      6      5
  AMP PEAK 25(11P11.2) WILD-TYPE    130     77    103    127     42
D25V9, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           34                            130
  CLUS_2                            3                             77
  CLUS_3                            3                            103
  CLUS_4                            6                            127
  CLUS_5                            5                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       11     36      4
  AMP PEAK 25(11P11.2) WILD-TYPE    207    136    136
D25V10, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           11                            207
  CLUS_2                           36                            136
  CLUS_3                            4                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED       20      5      9      7
  AMP PEAK 25(11P11.2) WILD-TYPE     96     93     83     85
D25V11, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           20                             96
  CLUS_2                            5                             93
  CLUS_3                            9                             83
  CLUS_4                            7                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       21      6     14
  AMP PEAK 25(11P11.2) WILD-TYPE    142    126     89
D25V12, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           21                            142
  CLUS_2                            6                            126
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED        0      7      0      0
  AMP PEAK 26(11Q13.2) WILD-TYPE     15     10     14      7
D26V1, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            7                             10
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(11Q13.2) MUTATED        3      4      0      0      0
  AMP PEAK 26(11Q13.2) WILD-TYPE     11      5      7      7     16
D26V2, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED       65      4      3      2
  AMP PEAK 26(11Q13.2) WILD-TYPE    143    174     96     52
D26V3, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           65                            143
  CLUS_2                            4                            174
  CLUS_3                            3                             96
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       37     11     15
  AMP PEAK 26(11Q13.2) WILD-TYPE    117     67    178
D26V4, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           37                            117
  CLUS_2                           11                             67
  CLUS_3                           15                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(11Q13.2) MUTATED        2      4      8     15     18      7
  AMP PEAK 26(11Q13.2) WILD-TYPE     37     77     44     41     66     61
                                vv
clus                             CLUS_7
  AMP PEAK 26(11Q13.2) MUTATED        9
  AMP PEAK 26(11Q13.2) WILD-TYPE     44
D26V5, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            4                             77
  CLUS_3                            8                             44
  CLUS_4                           15                             41
  CLUS_5                           18                             66
  CLUS_6                            7                             61
  CLUS_7                            9                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED        5     39     13      6
  AMP PEAK 26(11Q13.2) WILD-TYPE    103    143     80     44
D26V6, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            5                            103
  CLUS_2                           39                            143
  CLUS_3                           13                             80
  CLUS_4                            6                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED       51      7      3     12
  AMP PEAK 26(11Q13.2) WILD-TYPE    137    116     90    121
D26V7, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           51                            137
  CLUS_2                            7                            116
  CLUS_3                            3                             90
  CLUS_4                           12                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(11Q13.2) MUTATED       39      1      2      2     16     10
  AMP PEAK 26(11Q13.2) WILD-TYPE     84     52     45     63     92     56
                                vv
clus                             CLUS_7
  AMP PEAK 26(11Q13.2) MUTATED        3
  AMP PEAK 26(11Q13.2) WILD-TYPE     72
D26V8, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           39                             84
  CLUS_2                            1                             52
  CLUS_3                            2                             45
  CLUS_4                            2                             63
  CLUS_5                           16                             92
  CLUS_6                           10                             56
  CLUS_7                            3                             72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(11Q13.2) MUTATED       44      3      5     15      5
  AMP PEAK 26(11Q13.2) WILD-TYPE    120     77    101    118     42
D26V9, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           44                            120
  CLUS_2                            3                             77
  CLUS_3                            5                            101
  CLUS_4                           15                            118
  CLUS_5                            5                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       19     41     12
  AMP PEAK 26(11Q13.2) WILD-TYPE    199    131    128
D26V10, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           19                            199
  CLUS_2                           41                            131
  CLUS_3                           12                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED       24     10      9     16
  AMP PEAK 26(11Q13.2) WILD-TYPE     92     88     83     76
D26V11, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           24                             92
  CLUS_2                           10                             88
  CLUS_3                            9                             83
  CLUS_4                           16                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       36     13     10
  AMP PEAK 26(11Q13.2) WILD-TYPE    127    119     93
D26V12, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           36                            127
  CLUS_2                           13                            119
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED        1      4      0      0
  AMP PEAK 27(11Q14.1) WILD-TYPE     14     13     14      7
D27V1, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            4                             13
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11Q14.1) MUTATED        3      2      0      0      0
  AMP PEAK 27(11Q14.1) WILD-TYPE     11      7      7      7     16
D27V2, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED       54      2      2      2
  AMP PEAK 27(11Q14.1) WILD-TYPE    154    176     97     52
D27V3, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           54                            154
  CLUS_2                            2                            176
  CLUS_3                            2                             97
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       32      9     10
  AMP PEAK 27(11Q14.1) WILD-TYPE    122     69    183
D27V4, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           32                            122
  CLUS_2                            9                             69
  CLUS_3                           10                            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11Q14.1) MUTATED        1      4      6     10     16      6
  AMP PEAK 27(11Q14.1) WILD-TYPE     38     77     46     46     68     62
                                vv
clus                             CLUS_7
  AMP PEAK 27(11Q14.1) MUTATED        7
  AMP PEAK 27(11Q14.1) WILD-TYPE     46
D27V5, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            4                             77
  CLUS_3                            6                             46
  CLUS_4                           10                             46
  CLUS_5                           16                             68
  CLUS_6                            6                             62
  CLUS_7                            7                             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED        4     32     10      4
  AMP PEAK 27(11Q14.1) WILD-TYPE    104    150     83     46
D27V6, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           32                            150
  CLUS_3                           10                             83
  CLUS_4                            4                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED       41      6      4      8
  AMP PEAK 27(11Q14.1) WILD-TYPE    147    117     89    125
D27V7, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           41                            147
  CLUS_2                            6                            117
  CLUS_3                            4                             89
  CLUS_4                            8                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11Q14.1) MUTATED       34      1      4      2      9      7
  AMP PEAK 27(11Q14.1) WILD-TYPE     89     52     43     63     99     59
                                vv
clus                             CLUS_7
  AMP PEAK 27(11Q14.1) MUTATED        2
  AMP PEAK 27(11Q14.1) WILD-TYPE     73
D27V8, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           34                             89
  CLUS_2                            1                             52
  CLUS_3                            4                             43
  CLUS_4                            2                             63
  CLUS_5                            9                             99
  CLUS_6                            7                             59
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11Q14.1) MUTATED       35      3      4     12      6
  AMP PEAK 27(11Q14.1) WILD-TYPE    129     77    102    121     41
D27V9, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           35                            129
  CLUS_2                            3                             77
  CLUS_3                            4                            102
  CLUS_4                           12                            121
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       13     38      9
  AMP PEAK 27(11Q14.1) WILD-TYPE    205    134    131
D27V10, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           13                            205
  CLUS_2                           38                            134
  CLUS_3                            9                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED       23      7      8     11
  AMP PEAK 27(11Q14.1) WILD-TYPE     93     91     84     81
D27V11, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           23                             93
  CLUS_2                            7                             91
  CLUS_3                            8                             84
  CLUS_4                           11                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       28      9     12
  AMP PEAK 27(11Q14.1) WILD-TYPE    135    123     91
D27V12, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           28                            135
  CLUS_2                            9                            123
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED        1      3      3      0
  AMP PEAK 28(12P12.1) WILD-TYPE     14     14     11      7
D28V1, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            3                             14
  CLUS_3                            3                             11
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(12P12.1) MUTATED        3      2      1      0      1
  AMP PEAK 28(12P12.1) WILD-TYPE     11      7      6      7     15
D28V2, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED       72      5      7      8
  AMP PEAK 28(12P12.1) WILD-TYPE    136    173     92     46
D28V3, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           72                            136
  CLUS_2                            5                            173
  CLUS_3                            7                             92
  CLUS_4                            8                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       48     17     11
  AMP PEAK 28(12P12.1) WILD-TYPE    106     61    182
D28V4, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           48                            106
  CLUS_2                           17                             61
  CLUS_3                           11                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(12P12.1) MUTATED        3      8      9     11     22     14
  AMP PEAK 28(12P12.1) WILD-TYPE     36     73     43     45     62     54
                                vv
clus                             CLUS_7
  AMP PEAK 28(12P12.1) MUTATED        9
  AMP PEAK 28(12P12.1) WILD-TYPE     44
D28V5, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            8                             73
  CLUS_3                            9                             43
  CLUS_4                           11                             45
  CLUS_5                           22                             62
  CLUS_6                           14                             54
  CLUS_7                            9                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED       12     48     11      5
  AMP PEAK 28(12P12.1) WILD-TYPE     96    134     82     45
D28V6, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           12                             96
  CLUS_2                           48                            134
  CLUS_3                           11                             82
  CLUS_4                            5                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED       61      9     12     10
  AMP PEAK 28(12P12.1) WILD-TYPE    127    114     81    123
D28V7, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           61                            127
  CLUS_2                            9                            114
  CLUS_3                           12                             81
  CLUS_4                           10                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(12P12.1) MUTATED       48      2     11      6     13      3
  AMP PEAK 28(12P12.1) WILD-TYPE     75     51     36     59     95     63
                                vv
clus                             CLUS_7
  AMP PEAK 28(12P12.1) MUTATED        9
  AMP PEAK 28(12P12.1) WILD-TYPE     66
D28V8, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           48                             75
  CLUS_2                            2                             51
  CLUS_3                           11                             36
  CLUS_4                            6                             59
  CLUS_5                           13                             95
  CLUS_6                            3                             63
  CLUS_7                            9                             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(12P12.1) MUTATED       51      7     13     10     11
  AMP PEAK 28(12P12.1) WILD-TYPE    113     73     93    123     36
D28V9, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           51                            113
  CLUS_2                            7                             73
  CLUS_3                           13                             93
  CLUS_4                           10                            123
  CLUS_5                           11                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       23     57     12
  AMP PEAK 28(12P12.1) WILD-TYPE    195    115    128
D28V10, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           23                            195
  CLUS_2                           57                            115
  CLUS_3                           12                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED       34      8     13     18
  AMP PEAK 28(12P12.1) WILD-TYPE     82     90     79     74
D28V11, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                            8                             90
  CLUS_3                           13                             79
  CLUS_4                           18                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       45     10     18
  AMP PEAK 28(12P12.1) WILD-TYPE    118    122     85
D28V12, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           45                            118
  CLUS_2                           10                            122
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(12Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED        2      4      3      0
  AMP PEAK 29(12Q13.11) WILD-TYPE     13     13     11      7
D29V1, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             4                              13
  CLUS_3                             3                              11
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(12Q13.11) MUTATED        4      3      1      0      1
  AMP PEAK 29(12Q13.11) WILD-TYPE     10      6      6      7     15
D29V2, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             3                               6
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED       71      4      5      7
  AMP PEAK 29(12Q13.11) WILD-TYPE    137    174     94     47
D29V3, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            71                             137
  CLUS_2                             4                             174
  CLUS_3                             5                              94
  CLUS_4                             7                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       43     20      8
  AMP PEAK 29(12Q13.11) WILD-TYPE    111     58    185
D29V4, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            43                             111
  CLUS_2                            20                              58
  CLUS_3                             8                             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(12Q13.11) MUTATED        1      6      5     13     27     12
  AMP PEAK 29(12Q13.11) WILD-TYPE     38     75     47     43     57     56
                                 vv
clus                              CLUS_7
  AMP PEAK 29(12Q13.11) MUTATED        8
  AMP PEAK 29(12Q13.11) WILD-TYPE     45
D29V5, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             1                              38
  CLUS_2                             6                              75
  CLUS_3                             5                              47
  CLUS_4                            13                              43
  CLUS_5                            27                              57
  CLUS_6                            12                              56
  CLUS_7                             8                              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED        9     46     12      5
  AMP PEAK 29(12Q13.11) WILD-TYPE     99    136     81     45
D29V6, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             9                              99
  CLUS_2                            46                             136
  CLUS_3                            12                              81
  CLUS_4                             5                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED       57      7     13      9
  AMP PEAK 29(12Q13.11) WILD-TYPE    131    116     80    124
D29V7, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            57                             131
  CLUS_2                             7                             116
  CLUS_3                            13                              80
  CLUS_4                             9                             124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(12Q13.11) MUTATED       45      1     12      6     11      4
  AMP PEAK 29(12Q13.11) WILD-TYPE     78     52     35     59     97     62
                                 vv
clus                              CLUS_7
  AMP PEAK 29(12Q13.11) MUTATED        7
  AMP PEAK 29(12Q13.11) WILD-TYPE     68
D29V8, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            45                              78
  CLUS_2                             1                              52
  CLUS_3                            12                              35
  CLUS_4                             6                              59
  CLUS_5                            11                              97
  CLUS_6                             4                              62
  CLUS_7                             7                              68
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(12Q13.11) MUTATED       51      7     13      9      7
  AMP PEAK 29(12Q13.11) WILD-TYPE    113     73     93    124     40
D29V9, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            51                             113
  CLUS_2                             7                              73
  CLUS_3                            13                              93
  CLUS_4                             9                             124
  CLUS_5                             7                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       19     57     11
  AMP PEAK 29(12Q13.11) WILD-TYPE    199    115    129
D29V10, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            19                             199
  CLUS_2                            57                             115
  CLUS_3                            11                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED       30      7     13     16
  AMP PEAK 29(12Q13.11) WILD-TYPE     86     91     79     76
D29V11, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            30                              86
  CLUS_2                             7                              91
  CLUS_3                            13                              79
  CLUS_4                            16                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       41      9     16
  AMP PEAK 29(12Q13.11) WILD-TYPE    122    123     87
D29V12, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            41                             122
  CLUS_2                             9                             123
  CLUS_3                            16                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(12Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED        2      5      4      0
  AMP PEAK 30(12Q13.2) WILD-TYPE     13     12     10      7
D30V1, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            5                             12
  CLUS_3                            4                             10
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12Q13.2) MUTATED        4      4      2      0      1
  AMP PEAK 30(12Q13.2) WILD-TYPE     10      5      5      7     15
D30V2, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              5
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED       83      4      6      7
  AMP PEAK 30(12Q13.2) WILD-TYPE    125    174     93     47
D30V3, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           83                            125
  CLUS_2                            4                            174
  CLUS_3                            6                             93
  CLUS_4                            7                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       48     20     14
  AMP PEAK 30(12Q13.2) WILD-TYPE    106     58    179
D30V4, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           48                            106
  CLUS_2                           20                             58
  CLUS_3                           14                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12Q13.2) MUTATED        1      8      6     17     26     12
  AMP PEAK 30(12Q13.2) WILD-TYPE     38     73     46     39     58     56
                                vv
clus                             CLUS_7
  AMP PEAK 30(12Q13.2) MUTATED        8
  AMP PEAK 30(12Q13.2) WILD-TYPE     45
D30V5, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            8                             73
  CLUS_3                            6                             46
  CLUS_4                           17                             39
  CLUS_5                           26                             58
  CLUS_6                           12                             56
  CLUS_7                            8                             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED       10     49     14      5
  AMP PEAK 30(12Q13.2) WILD-TYPE     98    133     79     45
D30V6, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           10                             98
  CLUS_2                           49                            133
  CLUS_3                           14                             79
  CLUS_4                            5                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED       61      8     17     13
  AMP PEAK 30(12Q13.2) WILD-TYPE    127    115     76    120
D30V7, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           61                            127
  CLUS_2                            8                            115
  CLUS_3                           17                             76
  CLUS_4                           13                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12Q13.2) MUTATED       46      1     16      6     15      7
  AMP PEAK 30(12Q13.2) WILD-TYPE     77     52     31     59     93     59
                                vv
clus                             CLUS_7
  AMP PEAK 30(12Q13.2) MUTATED        8
  AMP PEAK 30(12Q13.2) WILD-TYPE     67
D30V8, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            1                             52
  CLUS_3                           16                             31
  CLUS_4                            6                             59
  CLUS_5                           15                             93
  CLUS_6                            7                             59
  CLUS_7                            8                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12Q13.2) MUTATED       57      6     15     12      8
  AMP PEAK 30(12Q13.2) WILD-TYPE    107     74     91    121     39
D30V9, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           57                            107
  CLUS_2                            6                             74
  CLUS_3                           15                             91
  CLUS_4                           12                            121
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       20     63     15
  AMP PEAK 30(12Q13.2) WILD-TYPE    198    109    125
D30V10, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           20                            198
  CLUS_2                           63                            109
  CLUS_3                           15                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED       37     10     11     20
  AMP PEAK 30(12Q13.2) WILD-TYPE     79     88     81     72
D30V11, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           37                             79
  CLUS_2                           10                             88
  CLUS_3                           11                             81
  CLUS_4                           20                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       47     13     18
  AMP PEAK 30(12Q13.2) WILD-TYPE    116    119     85
D30V12, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           47                            116
  CLUS_2                           13                            119
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED        1      2      0      0
  AMP PEAK 31(13Q34) WILD-TYPE     14     15     14      7
D31V1, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                          2                           15
  CLUS_3                          0                           14
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(13Q34) MUTATED        1      2      0      0      0
  AMP PEAK 31(13Q34) WILD-TYPE     13      7      7      7     16
D31V2, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            7
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED       53      1      2      2
  AMP PEAK 31(13Q34) WILD-TYPE    155    177     97     52
D31V3, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         53                          155
  CLUS_2                          1                          177
  CLUS_3                          2                           97
  CLUS_4                          2                           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       34     14      5
  AMP PEAK 31(13Q34) WILD-TYPE    120     64    188
D31V4, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         34                          120
  CLUS_2                         14                           64
  CLUS_3                          5                          188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 31(13Q34) MUTATED        0      2      4      8     18      7      6
  AMP PEAK 31(13Q34) WILD-TYPE     39     79     48     48     66     61     47
D31V5, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          0                           39
  CLUS_2                          2                           79
  CLUS_3                          4                           48
  CLUS_4                          8                           48
  CLUS_5                         18                           66
  CLUS_6                          7                           61
  CLUS_7                          6                           47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED        1     32      9      3
  AMP PEAK 31(13Q34) WILD-TYPE    107    150     84     47
D31V6, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                          107
  CLUS_2                         32                          150
  CLUS_3                          9                           84
  CLUS_4                          3                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED       50      0      5      3
  AMP PEAK 31(13Q34) WILD-TYPE    138    123     88    130
D31V7, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         50                          138
  CLUS_2                          0                          123
  CLUS_3                          5                           88
  CLUS_4                          3                          130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 31(13Q34) MUTATED       46      0      5      2      3      1      1
  AMP PEAK 31(13Q34) WILD-TYPE     77     53     42     63    105     65     74
D31V8, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         46                           77
  CLUS_2                          0                           53
  CLUS_3                          5                           42
  CLUS_4                          2                           63
  CLUS_5                          3                          105
  CLUS_6                          1                           65
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(13Q34) MUTATED       42      2      6      3      5
  AMP PEAK 31(13Q34) WILD-TYPE    122     78    100    130     42
D31V9, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         42                          122
  CLUS_2                          2                           78
  CLUS_3                          6                          100
  CLUS_4                          3                          130
  CLUS_5                          5                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        8     46      4
  AMP PEAK 31(13Q34) WILD-TYPE    210    126    136
D31V10, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          8                          210
  CLUS_2                         46                          126
  CLUS_3                          4                          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED       24      2     12     14
  AMP PEAK 31(13Q34) WILD-TYPE     92     96     80     78
D31V11, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         24                           92
  CLUS_2                          2                           96
  CLUS_3                         12                           80
  CLUS_4                         14                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       31      4     17
  AMP PEAK 31(13Q34) WILD-TYPE    132    128     86
D31V12, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         31                          132
  CLUS_2                          4                          128
  CLUS_3                         17                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED        1      6      1      0
  AMP PEAK 32(14Q24.3) WILD-TYPE     14     11     13      7
D32V1, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            6                             11
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(14Q24.3) MUTATED        1      5      0      1      1
  AMP PEAK 32(14Q24.3) WILD-TYPE     13      4      7      6     15
D32V2, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED       56      1      2      5
  AMP PEAK 32(14Q24.3) WILD-TYPE    152    177     97     49
D32V3, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           56                            152
  CLUS_2                            1                            177
  CLUS_3                            2                             97
  CLUS_4                            5                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       32     12     10
  AMP PEAK 32(14Q24.3) WILD-TYPE    122     66    183
D32V4, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           32                            122
  CLUS_2                           12                             66
  CLUS_3                           10                            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(14Q24.3) MUTATED        3      4      1      9     13      4
  AMP PEAK 32(14Q24.3) WILD-TYPE     36     77     51     47     71     64
                                vv
clus                             CLUS_7
  AMP PEAK 32(14Q24.3) MUTATED       12
  AMP PEAK 32(14Q24.3) WILD-TYPE     41
D32V5, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            4                             77
  CLUS_3                            1                             51
  CLUS_4                            9                             47
  CLUS_5                           13                             71
  CLUS_6                            4                             64
  CLUS_7                           12                             41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED        4     28      8      6
  AMP PEAK 32(14Q24.3) WILD-TYPE    104    154     85     44
D32V6, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           28                            154
  CLUS_3                            8                             85
  CLUS_4                            6                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED       52      4      1      7
  AMP PEAK 32(14Q24.3) WILD-TYPE    136    119     92    126
D32V7, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           52                            136
  CLUS_2                            4                            119
  CLUS_3                            1                             92
  CLUS_4                            7                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(14Q24.3) MUTATED       40      1      8      1      9      1
  AMP PEAK 32(14Q24.3) WILD-TYPE     83     52     39     64     99     65
                                vv
clus                             CLUS_7
  AMP PEAK 32(14Q24.3) MUTATED        4
  AMP PEAK 32(14Q24.3) WILD-TYPE     71
D32V8, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           40                             83
  CLUS_2                            1                             52
  CLUS_3                            8                             39
  CLUS_4                            1                             64
  CLUS_5                            9                             99
  CLUS_6                            1                             65
  CLUS_7                            4                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(14Q24.3) MUTATED       38      5      3      9      7
  AMP PEAK 32(14Q24.3) WILD-TYPE    126     75    103    124     40
D32V9, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           38                            126
  CLUS_2                            5                             75
  CLUS_3                            3                            103
  CLUS_4                            9                            124
  CLUS_5                            7                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       11     42      9
  AMP PEAK 32(14Q24.3) WILD-TYPE    207    130    131
D32V10, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           11                            207
  CLUS_2                           42                            130
  CLUS_3                            9                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED       23      7     10     13
  AMP PEAK 32(14Q24.3) WILD-TYPE     93     91     82     79
D32V11, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           23                             93
  CLUS_2                            7                             91
  CLUS_3                           10                             82
  CLUS_4                           13                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       25      9     19
  AMP PEAK 32(14Q24.3) WILD-TYPE    138    123     84
D32V12, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           25                            138
  CLUS_2                            9                            123
  CLUS_3                           19                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(14Q32.33) MUTATED        2      4      1      0
  AMP PEAK 33(14Q32.33) WILD-TYPE     13     13     13      7
D33V1, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             4                              13
  CLUS_3                             1                              13
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(14Q32.33) MUTATED        2      3      0      1      1
  AMP PEAK 33(14Q32.33) WILD-TYPE     12      6      7      6     15
D33V2, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             3                               6
  CLUS_3                             0                               7
  CLUS_4                             1                               6
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(14Q32.33) MUTATED       71      1      2      5
  AMP PEAK 33(14Q32.33) WILD-TYPE    137    177     97     49
D33V3, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            71                             137
  CLUS_2                             1                             177
  CLUS_3                             2                              97
  CLUS_4                             5                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(14Q32.33) MUTATED       42     13     13
  AMP PEAK 33(14Q32.33) WILD-TYPE    112     65    180
D33V4, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            42                             112
  CLUS_2                            13                              65
  CLUS_3                            13                             180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(14Q32.33) MUTATED        3      5      4     16     19      4
  AMP PEAK 33(14Q32.33) WILD-TYPE     36     76     48     40     65     64
                                 vv
clus                              CLUS_7
  AMP PEAK 33(14Q32.33) MUTATED       10
  AMP PEAK 33(14Q32.33) WILD-TYPE     43
D33V5, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             5                              76
  CLUS_3                             4                              48
  CLUS_4                            16                              40
  CLUS_5                            19                              65
  CLUS_6                             4                              64
  CLUS_7                            10                              43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(14Q32.33) MUTATED        4     37     15      5
  AMP PEAK 33(14Q32.33) WILD-TYPE    104    145     78     45
D33V6, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                             4                             104
  CLUS_2                            37                             145
  CLUS_3                            15                              78
  CLUS_4                             5                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(14Q32.33) MUTATED       58      5      3     12
  AMP PEAK 33(14Q32.33) WILD-TYPE    130    118     90    121
D33V7, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            58                             130
  CLUS_2                             5                             118
  CLUS_3                             3                              90
  CLUS_4                            12                             121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(14Q32.33) MUTATED       38      1     12      3     13      7
  AMP PEAK 33(14Q32.33) WILD-TYPE     85     52     35     62     95     59
                                 vv
clus                              CLUS_7
  AMP PEAK 33(14Q32.33) MUTATED        4
  AMP PEAK 33(14Q32.33) WILD-TYPE     71
D33V8, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            38                              85
  CLUS_2                             1                              52
  CLUS_3                            12                              35
  CLUS_4                             3                              62
  CLUS_5                            13                              95
  CLUS_6                             7                              59
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(14Q32.33) MUTATED       47      7      6     13      5
  AMP PEAK 33(14Q32.33) WILD-TYPE    117     73    100    120     42
D33V9, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            47                             117
  CLUS_2                             7                              73
  CLUS_3                             6                             100
  CLUS_4                            13                             120
  CLUS_5                             5                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(14Q32.33) MUTATED       15     52     11
  AMP PEAK 33(14Q32.33) WILD-TYPE    203    120    129
D33V10, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            15                             203
  CLUS_2                            52                             120
  CLUS_3                            11                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(14Q32.33) MUTATED       31     10     10     16
  AMP PEAK 33(14Q32.33) WILD-TYPE     85     88     82     76
D33V11, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            31                              85
  CLUS_2                            10                              88
  CLUS_3                            10                              82
  CLUS_4                            16                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(14Q32.33) MUTATED       36     14     17
  AMP PEAK 33(14Q32.33) WILD-TYPE    127    118     86
D33V12, multiclass
        clus
vv       AMP PEAK 33(14Q32.33) MUTATED AMP PEAK 33(14Q32.33) WILD-TYPE
  CLUS_1                            36                             127
  CLUS_2                            14                             118
  CLUS_3                            17                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(15Q26.3) MUTATED        0      1      0      0
  AMP PEAK 34(15Q26.3) WILD-TYPE     15     16     14      7
D34V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 34(15Q26.3) MUTATED"
clus
  AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(15Q26.3) MUTATED        1      0      0      0      0
  AMP PEAK 34(15Q26.3) WILD-TYPE     13      9      7      7     16
D34V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 34(15Q26.3) MUTATED"
clus
  AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"AMP PEAK 34(15Q26.3) WILD-TYPE" "AMP PEAK 34(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(15Q26.3) MUTATED       35      2      0      1
  AMP PEAK 34(15Q26.3) WILD-TYPE    173    176     99     53
D34V3, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           35                            173
  CLUS_2                            2                            176
  CLUS_3                            0                             99
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(15Q26.3) MUTATED       20      8      7
  AMP PEAK 34(15Q26.3) WILD-TYPE    134     70    186
D34V4, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           20                            134
  CLUS_2                            8                             70
  CLUS_3                            7                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(15Q26.3) MUTATED        0      1      2      5      8      5
  AMP PEAK 34(15Q26.3) WILD-TYPE     39     80     50     51     76     63
                                vv
clus                             CLUS_7
  AMP PEAK 34(15Q26.3) MUTATED        6
  AMP PEAK 34(15Q26.3) WILD-TYPE     47
D34V5, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            1                             80
  CLUS_3                            2                             50
  CLUS_4                            5                             51
  CLUS_5                            8                             76
  CLUS_6                            5                             63
  CLUS_7                            6                             47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(15Q26.3) MUTATED        2     16      7      2
  AMP PEAK 34(15Q26.3) WILD-TYPE    106    166     86     48
D34V6, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                            2                            106
  CLUS_2                           16                            166
  CLUS_3                            7                             86
  CLUS_4                            2                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(15Q26.3) MUTATED       29      2      4      3
  AMP PEAK 34(15Q26.3) WILD-TYPE    159    121     89    130
D34V7, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           29                            159
  CLUS_2                            2                            121
  CLUS_3                            4                             89
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(15Q26.3) MUTATED       20      1      6      1      8      2
  AMP PEAK 34(15Q26.3) WILD-TYPE    103     52     41     64    100     64
                                vv
clus                             CLUS_7
  AMP PEAK 34(15Q26.3) MUTATED        0
  AMP PEAK 34(15Q26.3) WILD-TYPE     75
D34V8, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           20                            103
  CLUS_2                            1                             52
  CLUS_3                            6                             41
  CLUS_4                            1                             64
  CLUS_5                            8                            100
  CLUS_6                            2                             64
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(15Q26.3) MUTATED       25      2      6      2      3
  AMP PEAK 34(15Q26.3) WILD-TYPE    139     78    100    131     44
D34V9, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           25                            139
  CLUS_2                            2                             78
  CLUS_3                            6                            100
  CLUS_4                            2                            131
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(15Q26.3) MUTATED        8     27      3
  AMP PEAK 34(15Q26.3) WILD-TYPE    210    145    137
D34V10, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                            8                            210
  CLUS_2                           27                            145
  CLUS_3                            3                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(15Q26.3) MUTATED       16      4      5      8
  AMP PEAK 34(15Q26.3) WILD-TYPE    100     94     87     84
D34V11, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           16                            100
  CLUS_2                            4                             94
  CLUS_3                            5                             87
  CLUS_4                            8                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(15Q26.3) MUTATED       18      5     10
  AMP PEAK 34(15Q26.3) WILD-TYPE    145    127     93
D34V12, multiclass
        clus
vv       AMP PEAK 34(15Q26.3) MUTATED AMP PEAK 34(15Q26.3) WILD-TYPE
  CLUS_1                           18                            145
  CLUS_2                            5                            127
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(16P11.2) MUTATED        0      5      0      0
  AMP PEAK 35(16P11.2) WILD-TYPE     15     12     14      7
D35V1, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            5                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(16P11.2) MUTATED        1      4      0      0      0
  AMP PEAK 35(16P11.2) WILD-TYPE     13      5      7      7     16
D35V2, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(16P11.2) MUTATED       62      0      1      3
  AMP PEAK 35(16P11.2) WILD-TYPE    146    178     98     51
D35V3, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           62                            146
  CLUS_2                            0                            178
  CLUS_3                            1                             98
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(16P11.2) MUTATED       34     15      8
  AMP PEAK 35(16P11.2) WILD-TYPE    120     63    185
D35V4, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           34                            120
  CLUS_2                           15                             63
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(16P11.2) MUTATED        1      2      7     10     16     10
  AMP PEAK 35(16P11.2) WILD-TYPE     38     79     45     46     68     58
                                vv
clus                             CLUS_7
  AMP PEAK 35(16P11.2) MUTATED        9
  AMP PEAK 35(16P11.2) WILD-TYPE     44
D35V5, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            2                             79
  CLUS_3                            7                             45
  CLUS_4                           10                             46
  CLUS_5                           16                             68
  CLUS_6                           10                             58
  CLUS_7                            9                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(16P11.2) MUTATED        3     35     12      5
  AMP PEAK 35(16P11.2) WILD-TYPE    105    147     81     45
D35V6, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           35                            147
  CLUS_3                           12                             81
  CLUS_4                            5                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(16P11.2) MUTATED       54      4      5      3
  AMP PEAK 35(16P11.2) WILD-TYPE    134    119     88    130
D35V7, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           54                            134
  CLUS_2                            4                            119
  CLUS_3                            5                             88
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(16P11.2) MUTATED       46      3      4      1      9      3
  AMP PEAK 35(16P11.2) WILD-TYPE     77     50     43     64     99     63
                                vv
clus                             CLUS_7
  AMP PEAK 35(16P11.2) MUTATED        0
  AMP PEAK 35(16P11.2) WILD-TYPE     75
D35V8, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           46                             77
  CLUS_2                            3                             50
  CLUS_3                            4                             43
  CLUS_4                            1                             64
  CLUS_5                            9                             99
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(16P11.2) MUTATED       45      3      5      4      6
  AMP PEAK 35(16P11.2) WILD-TYPE    119     77    101    129     41
D35V9, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           45                            119
  CLUS_2                            3                             77
  CLUS_3                            5                            101
  CLUS_4                            4                            129
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(16P11.2) MUTATED       13     46      4
  AMP PEAK 35(16P11.2) WILD-TYPE    205    126    136
D35V10, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           13                            205
  CLUS_2                           46                            126
  CLUS_3                            4                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(16P11.2) MUTATED       26      4     10     12
  AMP PEAK 35(16P11.2) WILD-TYPE     90     94     82     80
D35V11, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           26                             90
  CLUS_2                            4                             94
  CLUS_3                           10                             82
  CLUS_4                           12                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(16P11.2) MUTATED       27      7     18
  AMP PEAK 35(16P11.2) WILD-TYPE    136    125     85
D35V12, multiclass
        clus
vv       AMP PEAK 35(16P11.2) MUTATED AMP PEAK 35(16P11.2) WILD-TYPE
  CLUS_1                           27                            136
  CLUS_2                            7                            125
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q11.2) MUTATED        1      4      0      0
  AMP PEAK 36(17Q11.2) WILD-TYPE     14     13     14      7
D36V1, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            4                             13
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(17Q11.2) MUTATED        2      3      0      0      0
  AMP PEAK 36(17Q11.2) WILD-TYPE     12      6      7      7     16
D36V2, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q11.2) MUTATED       64      3      1      3
  AMP PEAK 36(17Q11.2) WILD-TYPE    144    175     98     51
D36V3, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           64                            144
  CLUS_2                            3                            175
  CLUS_3                            1                             98
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q11.2) MUTATED       46     13      4
  AMP PEAK 36(17Q11.2) WILD-TYPE    108     65    189
D36V4, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           46                            108
  CLUS_2                           13                             65
  CLUS_3                            4                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(17Q11.2) MUTATED        2      0      2     15     22     10
  AMP PEAK 36(17Q11.2) WILD-TYPE     37     81     50     41     62     58
                                vv
clus                             CLUS_7
  AMP PEAK 36(17Q11.2) MUTATED        5
  AMP PEAK 36(17Q11.2) WILD-TYPE     48
D36V5, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            0                             81
  CLUS_3                            2                             50
  CLUS_4                           15                             41
  CLUS_5                           22                             62
  CLUS_6                           10                             58
  CLUS_7                            5                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q11.2) MUTATED        3     36     15      2
  AMP PEAK 36(17Q11.2) WILD-TYPE    105    146     78     48
D36V6, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           36                            146
  CLUS_3                           15                             78
  CLUS_4                            2                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q11.2) MUTATED       61      1      5      3
  AMP PEAK 36(17Q11.2) WILD-TYPE    127    122     88    130
D36V7, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           61                            127
  CLUS_2                            1                            122
  CLUS_3                            5                             88
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(17Q11.2) MUTATED       50      0      9      2      6      3
  AMP PEAK 36(17Q11.2) WILD-TYPE     73     53     38     63    102     63
                                vv
clus                             CLUS_7
  AMP PEAK 36(17Q11.2) MUTATED        0
  AMP PEAK 36(17Q11.2) WILD-TYPE     75
D36V8, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           50                             73
  CLUS_2                            0                             53
  CLUS_3                            9                             38
  CLUS_4                            2                             63
  CLUS_5                            6                            102
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(17Q11.2) MUTATED       55      2      6      2      3
  AMP PEAK 36(17Q11.2) WILD-TYPE    109     78    100    131     44
D36V9, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           55                            109
  CLUS_2                            2                             78
  CLUS_3                            6                            100
  CLUS_4                            2                            131
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q11.2) MUTATED       12     54      2
  AMP PEAK 36(17Q11.2) WILD-TYPE    206    118    138
D36V10, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           12                            206
  CLUS_2                           54                            118
  CLUS_3                            2                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q11.2) MUTATED       31      5     11     11
  AMP PEAK 36(17Q11.2) WILD-TYPE     85     93     81     81
D36V11, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           31                             85
  CLUS_2                            5                             93
  CLUS_3                           11                             81
  CLUS_4                           11                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q11.2) MUTATED       39      5     14
  AMP PEAK 36(17Q11.2) WILD-TYPE    124    127     89
D36V12, multiclass
        clus
vv       AMP PEAK 36(17Q11.2) MUTATED AMP PEAK 36(17Q11.2) WILD-TYPE
  CLUS_1                           39                            124
  CLUS_2                            5                            127
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = AMP PEAK 37(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q12) MUTATED        0      4      1      0
  AMP PEAK 37(17Q12) WILD-TYPE     15     13     13      7
D37V1, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          4                           13
  CLUS_3                          1                           13
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(17Q12) MUTATED        0      4      1      0      0
  AMP PEAK 37(17Q12) WILD-TYPE     14      5      6      7     16
D37V2, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                            5
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q12) MUTATED       67      4      3      1
  AMP PEAK 37(17Q12) WILD-TYPE    141    174     96     53
D37V3, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         67                          141
  CLUS_2                          4                          174
  CLUS_3                          3                           96
  CLUS_4                          1                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q12) MUTATED       47     14      2
  AMP PEAK 37(17Q12) WILD-TYPE    107     64    191
D37V4, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         47                          107
  CLUS_2                         14                           64
  CLUS_3                          2                          191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 37(17Q12) MUTATED        1      2      1     10     28      9      9
  AMP PEAK 37(17Q12) WILD-TYPE     38     79     51     46     56     59     44
D37V5, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                          1                           38
  CLUS_2                          2                           79
  CLUS_3                          1                           51
  CLUS_4                         10                           46
  CLUS_5                         28                           56
  CLUS_6                          9                           59
  CLUS_7                          9                           44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q12) MUTATED        4     43      7      6
  AMP PEAK 37(17Q12) WILD-TYPE    104    139     86     44
D37V6, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                          4                          104
  CLUS_2                         43                          139
  CLUS_3                          7                           86
  CLUS_4                          6                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q12) MUTATED       61      1     11      2
  AMP PEAK 37(17Q12) WILD-TYPE    127    122     82    131
D37V7, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         61                          127
  CLUS_2                          1                          122
  CLUS_3                         11                           82
  CLUS_4                          2                          131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 37(17Q12) MUTATED       51      0     15      2      5      2      0
  AMP PEAK 37(17Q12) WILD-TYPE     72     53     32     63    103     64     75
D37V8, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         51                           72
  CLUS_2                          0                           53
  CLUS_3                         15                           32
  CLUS_4                          2                           63
  CLUS_5                          5                          103
  CLUS_6                          2                           64
  CLUS_7                          0                           75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(17Q12) MUTATED       58      1      9      3      2
  AMP PEAK 37(17Q12) WILD-TYPE    106     79     97    130     45
D37V9, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         58                          106
  CLUS_2                          1                           79
  CLUS_3                          9                           97
  CLUS_4                          3                          130
  CLUS_5                          2                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q12) MUTATED        7     63      3
  AMP PEAK 37(17Q12) WILD-TYPE    211    109    137
D37V10, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                          7                          211
  CLUS_2                         63                          109
  CLUS_3                          3                          137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q12) MUTATED       30      5     11     14
  AMP PEAK 37(17Q12) WILD-TYPE     86     93     81     78
D37V11, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         30                           86
  CLUS_2                          5                           93
  CLUS_3                         11                           81
  CLUS_4                         14                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q12) MUTATED       38      4     18
  AMP PEAK 37(17Q12) WILD-TYPE    125    128     85
D37V12, multiclass
        clus
vv       AMP PEAK 37(17Q12) MUTATED AMP PEAK 37(17Q12) WILD-TYPE
  CLUS_1                         38                          125
  CLUS_2                          4                          128
  CLUS_3                         18                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = AMP PEAK 38(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q25.1) MUTATED        0     10      1      0
  AMP PEAK 38(17Q25.1) WILD-TYPE     15      7     13      7
D38V1, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                           10                              7
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(17Q25.1) MUTATED        2      8      1      0      0
  AMP PEAK 38(17Q25.1) WILD-TYPE     12      1      6      7     16
D38V2, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q25.1) MUTATED       95      4      3      3
  AMP PEAK 38(17Q25.1) WILD-TYPE    113    174     96     51
D38V3, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           95                            113
  CLUS_2                            4                            174
  CLUS_3                            3                             96
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q25.1) MUTATED       54     23      8
  AMP PEAK 38(17Q25.1) WILD-TYPE    100     55    185
D38V4, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           54                            100
  CLUS_2                           23                             55
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(17Q25.1) MUTATED        3      1      5     14     38     11
  AMP PEAK 38(17Q25.1) WILD-TYPE     36     80     47     42     46     57
                                vv
clus                             CLUS_7
  AMP PEAK 38(17Q25.1) MUTATED       13
  AMP PEAK 38(17Q25.1) WILD-TYPE     40
D38V5, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            1                             80
  CLUS_3                            5                             47
  CLUS_4                           14                             42
  CLUS_5                           38                             46
  CLUS_6                           11                             57
  CLUS_7                           13                             40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q25.1) MUTATED        4     56     18      7
  AMP PEAK 38(17Q25.1) WILD-TYPE    104    126     75     43
D38V6, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           56                            126
  CLUS_3                           18                             75
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q25.1) MUTATED       81      5     11      7
  AMP PEAK 38(17Q25.1) WILD-TYPE    107    118     82    126
D38V7, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           81                            107
  CLUS_2                            5                            118
  CLUS_3                           11                             82
  CLUS_4                            7                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(17Q25.1) MUTATED       72      0     13      2      9      7
  AMP PEAK 38(17Q25.1) WILD-TYPE     51     53     34     63     99     59
                                vv
clus                             CLUS_7
  AMP PEAK 38(17Q25.1) MUTATED        1
  AMP PEAK 38(17Q25.1) WILD-TYPE     74
D38V8, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           72                             51
  CLUS_2                            0                             53
  CLUS_3                           13                             34
  CLUS_4                            2                             63
  CLUS_5                            9                             99
  CLUS_6                            7                             59
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(17Q25.1) MUTATED       77      5      9      7      3
  AMP PEAK 38(17Q25.1) WILD-TYPE     87     75     97    126     44
D38V9, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           77                             87
  CLUS_2                            5                             75
  CLUS_3                            9                             97
  CLUS_4                            7                            126
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q25.1) MUTATED       18     77      6
  AMP PEAK 38(17Q25.1) WILD-TYPE    200     95    134
D38V10, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           18                            200
  CLUS_2                           77                             95
  CLUS_3                            6                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(17Q25.1) MUTATED       42      7     19     13
  AMP PEAK 38(17Q25.1) WILD-TYPE     74     91     73     79
D38V11, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           42                             74
  CLUS_2                            7                             91
  CLUS_3                           19                             73
  CLUS_4                           13                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(17Q25.1) MUTATED       43     10     28
  AMP PEAK 38(17Q25.1) WILD-TYPE    120    122     75
D38V12, multiclass
        clus
vv       AMP PEAK 38(17Q25.1) MUTATED AMP PEAK 38(17Q25.1) WILD-TYPE
  CLUS_1                           43                            120
  CLUS_2                           10                            122
  CLUS_3                           28                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = AMP PEAK 39(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18P11.31) MUTATED        1      5      1      0
  AMP PEAK 39(18P11.31) WILD-TYPE     14     12     13      7
D39V1, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                             5                              12
  CLUS_3                             1                              13
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(18P11.31) MUTATED        2      4      0      0      1
  AMP PEAK 39(18P11.31) WILD-TYPE     12      5      7      7     15
D39V2, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18P11.31) MUTATED       90      1      3      2
  AMP PEAK 39(18P11.31) WILD-TYPE    118    177     96     52
D39V3, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            90                             118
  CLUS_2                             1                             177
  CLUS_3                             3                              96
  CLUS_4                             2                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18P11.31) MUTATED       55     22      8
  AMP PEAK 39(18P11.31) WILD-TYPE     99     56    185
D39V4, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            55                              99
  CLUS_2                            22                              56
  CLUS_3                             8                             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(18P11.31) MUTATED        1      1      5     20     25     13
  AMP PEAK 39(18P11.31) WILD-TYPE     38     80     47     36     59     55
                                 vv
clus                              CLUS_7
  AMP PEAK 39(18P11.31) MUTATED       10
  AMP PEAK 39(18P11.31) WILD-TYPE     43
D39V5, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                             1                              38
  CLUS_2                             1                              80
  CLUS_3                             5                              47
  CLUS_4                            20                              36
  CLUS_5                            25                              59
  CLUS_6                            13                              55
  CLUS_7                            10                              43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18P11.31) MUTATED        4     50     15      6
  AMP PEAK 39(18P11.31) WILD-TYPE    104    132     78     44
D39V6, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                             4                             104
  CLUS_2                            50                             132
  CLUS_3                            15                              78
  CLUS_4                             6                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18P11.31) MUTATED       77      2      9      8
  AMP PEAK 39(18P11.31) WILD-TYPE    111    121     84    125
D39V7, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            77                             111
  CLUS_2                             2                             121
  CLUS_3                             9                              84
  CLUS_4                             8                             125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(18P11.31) MUTATED       61      1     17      1      9      4
  AMP PEAK 39(18P11.31) WILD-TYPE     62     52     30     64     99     62
                                 vv
clus                              CLUS_7
  AMP PEAK 39(18P11.31) MUTATED        3
  AMP PEAK 39(18P11.31) WILD-TYPE     72
D39V8, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            61                              62
  CLUS_2                             1                              52
  CLUS_3                            17                              30
  CLUS_4                             1                              64
  CLUS_5                             9                              99
  CLUS_6                             4                              62
  CLUS_7                             3                              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(18P11.31) MUTATED       69      5      6      6      9
  AMP PEAK 39(18P11.31) WILD-TYPE     95     75    100    127     38
D39V9, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            69                              95
  CLUS_2                             5                              75
  CLUS_3                             6                             100
  CLUS_4                             6                             127
  CLUS_5                             9                              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18P11.31) MUTATED       15     74      6
  AMP PEAK 39(18P11.31) WILD-TYPE    203     98    134
D39V10, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            15                             203
  CLUS_2                            74                              98
  CLUS_3                             6                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18P11.31) MUTATED       38      7     22     15
  AMP PEAK 39(18P11.31) WILD-TYPE     78     91     70     77
D39V11, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            38                              78
  CLUS_2                             7                              91
  CLUS_3                            22                              70
  CLUS_4                            15                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18P11.31) MUTATED       45      8     29
  AMP PEAK 39(18P11.31) WILD-TYPE    118    124     74
D39V12, multiclass
        clus
vv       AMP PEAK 39(18P11.31) MUTATED AMP PEAK 39(18P11.31) WILD-TYPE
  CLUS_1                            45                             118
  CLUS_2                             8                             124
  CLUS_3                            29                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = AMP PEAK 40(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(18Q11.2) MUTATED        0      4      1      0
  AMP PEAK 40(18Q11.2) WILD-TYPE     15     13     13      7
D40V1, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            4                             13
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(18Q11.2) MUTATED        1      3      0      0      1
  AMP PEAK 40(18Q11.2) WILD-TYPE     13      6      7      7     15
D40V2, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(18Q11.2) MUTATED       63      1      2      3
  AMP PEAK 40(18Q11.2) WILD-TYPE    145    177     97     51
D40V3, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           63                            145
  CLUS_2                            1                            177
  CLUS_3                            2                             97
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(18Q11.2) MUTATED       39     18      4
  AMP PEAK 40(18Q11.2) WILD-TYPE    115     60    189
D40V4, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           39                            115
  CLUS_2                           18                             60
  CLUS_3                            4                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(18Q11.2) MUTATED        1      1      3     15     20     10
  AMP PEAK 40(18Q11.2) WILD-TYPE     38     80     49     41     64     58
                                vv
clus                             CLUS_7
  AMP PEAK 40(18Q11.2) MUTATED        6
  AMP PEAK 40(18Q11.2) WILD-TYPE     47
D40V5, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            1                             80
  CLUS_3                            3                             49
  CLUS_4                           15                             41
  CLUS_5                           20                             64
  CLUS_6                           10                             58
  CLUS_7                            6                             47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(18Q11.2) MUTATED        1     39     13      3
  AMP PEAK 40(18Q11.2) WILD-TYPE    107    143     80     47
D40V6, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           39                            143
  CLUS_3                           13                             80
  CLUS_4                            3                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(18Q11.2) MUTATED       59      2      5      3
  AMP PEAK 40(18Q11.2) WILD-TYPE    129    121     88    130
D40V7, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           59                            129
  CLUS_2                            2                            121
  CLUS_3                            5                             88
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(18Q11.2) MUTATED       49      1      9      1      6      2
  AMP PEAK 40(18Q11.2) WILD-TYPE     74     52     38     64    102     64
                                vv
clus                             CLUS_7
  AMP PEAK 40(18Q11.2) MUTATED        1
  AMP PEAK 40(18Q11.2) WILD-TYPE     74
D40V8, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           49                             74
  CLUS_2                            1                             52
  CLUS_3                            9                             38
  CLUS_4                            1                             64
  CLUS_5                            6                            102
  CLUS_6                            2                             64
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(18Q11.2) MUTATED       53      5      4      1      5
  AMP PEAK 40(18Q11.2) WILD-TYPE    111     75    102    132     42
D40V9, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           53                            111
  CLUS_2                            5                             75
  CLUS_3                            4                            102
  CLUS_4                            1                            132
  CLUS_5                            5                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(18Q11.2) MUTATED       13     54      1
  AMP PEAK 40(18Q11.2) WILD-TYPE    205    118    139
D40V10, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           13                            205
  CLUS_2                           54                            118
  CLUS_3                            1                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(18Q11.2) MUTATED       31      2     12     12
  AMP PEAK 40(18Q11.2) WILD-TYPE     85     96     80     80
D40V11, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           31                             85
  CLUS_2                            2                             96
  CLUS_3                           12                             80
  CLUS_4                           12                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(18Q11.2) MUTATED       37      1     19
  AMP PEAK 40(18Q11.2) WILD-TYPE    126    131     84
D40V12, multiclass
        clus
vv       AMP PEAK 40(18Q11.2) MUTATED AMP PEAK 40(18Q11.2) WILD-TYPE
  CLUS_1                           37                            126
  CLUS_2                            1                            131
  CLUS_3                           19                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = AMP PEAK 41(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.2) MUTATED        0      9      0      0
  AMP PEAK 41(19P13.2) WILD-TYPE     15      8     14      7
D41V1, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            9                              8
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(19P13.2) MUTATED        2      7      0      0      0
  AMP PEAK 41(19P13.2) WILD-TYPE     12      2      7      7     16
D41V2, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.2) MUTATED       89      0      1      2
  AMP PEAK 41(19P13.2) WILD-TYPE    119    178     98     52
D41V3, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           89                            119
  CLUS_2                            0                            178
  CLUS_3                            1                             98
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.2) MUTATED       44     28      9
  AMP PEAK 41(19P13.2) WILD-TYPE    110     50    184
D41V4, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           44                            110
  CLUS_2                           28                             50
  CLUS_3                            9                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(19P13.2) MUTATED        1      3      4     16     26     10
  AMP PEAK 41(19P13.2) WILD-TYPE     38     78     48     40     58     58
                                vv
clus                             CLUS_7
  AMP PEAK 41(19P13.2) MUTATED       10
  AMP PEAK 41(19P13.2) WILD-TYPE     43
D41V5, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            3                             78
  CLUS_3                            4                             48
  CLUS_4                           16                             40
  CLUS_5                           26                             58
  CLUS_6                           10                             58
  CLUS_7                           10                             43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.2) MUTATED        3     52      9      6
  AMP PEAK 41(19P13.2) WILD-TYPE    105    130     84     44
D41V6, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           52                            130
  CLUS_3                            9                             84
  CLUS_4                            6                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.2) MUTATED       78      3      3      7
  AMP PEAK 41(19P13.2) WILD-TYPE    110    120     90    126
D41V7, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           78                            110
  CLUS_2                            3                            120
  CLUS_3                            3                             90
  CLUS_4                            7                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(19P13.2) MUTATED       68      1      4      2      9      6
  AMP PEAK 41(19P13.2) WILD-TYPE     55     52     43     63     99     60
                                vv
clus                             CLUS_7
  AMP PEAK 41(19P13.2) MUTATED        1
  AMP PEAK 41(19P13.2) WILD-TYPE     74
D41V8, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           68                             55
  CLUS_2                            1                             52
  CLUS_3                            4                             43
  CLUS_4                            2                             63
  CLUS_5                            9                             99
  CLUS_6                            6                             60
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(19P13.2) MUTATED       67      4      4      8      6
  AMP PEAK 41(19P13.2) WILD-TYPE     97     76    102    125     41
D41V9, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           67                             97
  CLUS_2                            4                             76
  CLUS_3                            4                            102
  CLUS_4                            8                            125
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.2) MUTATED       19     62      8
  AMP PEAK 41(19P13.2) WILD-TYPE    199    110    132
D41V10, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           19                            199
  CLUS_2                           62                            110
  CLUS_3                            8                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.2) MUTATED       40      7     17     11
  AMP PEAK 41(19P13.2) WILD-TYPE     76     91     75     81
D41V11, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           40                             76
  CLUS_2                            7                             91
  CLUS_3                           17                             75
  CLUS_4                           11                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.2) MUTATED       40     14     21
  AMP PEAK 41(19P13.2) WILD-TYPE    123    118     82
D41V12, multiclass
        clus
vv       AMP PEAK 41(19P13.2) MUTATED AMP PEAK 41(19P13.2) WILD-TYPE
  CLUS_1                           40                            123
  CLUS_2                           14                            118
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = AMP PEAK 42(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19P13.12) MUTATED        1      7      0      0
  AMP PEAK 42(19P13.12) WILD-TYPE     14     10     14      7
D42V1, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                             7                              10
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(19P13.12) MUTATED        2      6      0      0      0
  AMP PEAK 42(19P13.12) WILD-TYPE     12      3      7      7     16
D42V2, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19P13.12) MUTATED       96      0      2      1
  AMP PEAK 42(19P13.12) WILD-TYPE    112    178     97     53
D42V3, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            96                             112
  CLUS_2                             0                             178
  CLUS_3                             2                              97
  CLUS_4                             1                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19P13.12) MUTATED       50     27      9
  AMP PEAK 42(19P13.12) WILD-TYPE    104     51    184
D42V4, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            50                             104
  CLUS_2                            27                              51
  CLUS_3                             9                             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(19P13.12) MUTATED        1      3      7     18     25     10
  AMP PEAK 42(19P13.12) WILD-TYPE     38     78     45     38     59     58
                                 vv
clus                              CLUS_7
  AMP PEAK 42(19P13.12) MUTATED       11
  AMP PEAK 42(19P13.12) WILD-TYPE     42
D42V5, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                             1                              38
  CLUS_2                             3                              78
  CLUS_3                             7                              45
  CLUS_4                            18                              38
  CLUS_5                            25                              59
  CLUS_6                            10                              58
  CLUS_7                            11                              42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19P13.12) MUTATED        3     55     11      6
  AMP PEAK 42(19P13.12) WILD-TYPE    105    127     82     44
D42V6, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                             3                             105
  CLUS_2                            55                             127
  CLUS_3                            11                              82
  CLUS_4                             6                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19P13.12) MUTATED       85      5      3      5
  AMP PEAK 42(19P13.12) WILD-TYPE    103    118     90    128
D42V7, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            85                             103
  CLUS_2                             5                             118
  CLUS_3                             3                              90
  CLUS_4                             5                             128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(19P13.12) MUTATED       74      2      5      3      9      4
  AMP PEAK 42(19P13.12) WILD-TYPE     49     51     42     62     99     62
                                 vv
clus                              CLUS_7
  AMP PEAK 42(19P13.12) MUTATED        1
  AMP PEAK 42(19P13.12) WILD-TYPE     74
D42V8, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            74                              49
  CLUS_2                             2                              51
  CLUS_3                             5                              42
  CLUS_4                             3                              62
  CLUS_5                             9                              99
  CLUS_6                             4                              62
  CLUS_7                             1                              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(19P13.12) MUTATED       73      5      6      7      6
  AMP PEAK 42(19P13.12) WILD-TYPE     91     75    100    126     41
D42V9, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            73                              91
  CLUS_2                             5                              75
  CLUS_3                             6                             100
  CLUS_4                             7                             126
  CLUS_5                             6                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19P13.12) MUTATED       21     69      7
  AMP PEAK 42(19P13.12) WILD-TYPE    197    103    133
D42V10, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            21                             197
  CLUS_2                            69                             103
  CLUS_3                             7                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19P13.12) MUTATED       45      6     19     11
  AMP PEAK 42(19P13.12) WILD-TYPE     71     92     73     81
D42V11, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            45                              71
  CLUS_2                             6                              92
  CLUS_3                            19                              73
  CLUS_4                            11                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19P13.12) MUTATED       45     11     25
  AMP PEAK 42(19P13.12) WILD-TYPE    118    121     78
D42V12, multiclass
        clus
vv       AMP PEAK 42(19P13.12) MUTATED AMP PEAK 42(19P13.12) WILD-TYPE
  CLUS_1                            45                             118
  CLUS_2                            11                             121
  CLUS_3                            25                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = AMP PEAK 43(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19Q12) MUTATED        1      8      1      0
  AMP PEAK 43(19Q12) WILD-TYPE     14      9     13      7
D43V1, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                          8                            9
  CLUS_3                          1                           13
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(19Q12) MUTATED        2      7      1      0      0
  AMP PEAK 43(19Q12) WILD-TYPE     12      2      6      7     16
D43V2, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          7                            2
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19Q12) MUTATED      118      0      2      1
  AMP PEAK 43(19Q12) WILD-TYPE     90    178     97     53
D43V3, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                        118                           90
  CLUS_2                          0                          178
  CLUS_3                          2                           97
  CLUS_4                          1                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19Q12) MUTATED       68     28     11
  AMP PEAK 43(19Q12) WILD-TYPE     86     50    182
D43V4, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                         68                           86
  CLUS_2                         28                           50
  CLUS_3                         11                          182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 43(19Q12) MUTATED        1      3      6     18     34     17     13
  AMP PEAK 43(19Q12) WILD-TYPE     38     78     46     38     50     51     40
D43V5, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                          1                           38
  CLUS_2                          3                           78
  CLUS_3                          6                           46
  CLUS_4                         18                           38
  CLUS_5                         34                           50
  CLUS_6                         17                           51
  CLUS_7                         13                           40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19Q12) MUTATED        3     63     19      7
  AMP PEAK 43(19Q12) WILD-TYPE    105    119     74     43
D43V6, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                          3                          105
  CLUS_2                         63                          119
  CLUS_3                         19                           74
  CLUS_4                          7                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19Q12) MUTATED      100      3     11      7
  AMP PEAK 43(19Q12) WILD-TYPE     88    120     82    126
D43V7, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                        100                           88
  CLUS_2                          3                          120
  CLUS_3                         11                           82
  CLUS_4                          7                          126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 43(19Q12) MUTATED       81      1     19      3     11      5      1
  AMP PEAK 43(19Q12) WILD-TYPE     42     52     28     62     97     61     74
D43V8, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                         81                           42
  CLUS_2                          1                           52
  CLUS_3                         19                           28
  CLUS_4                          3                           62
  CLUS_5                         11                           97
  CLUS_6                          5                           61
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(19Q12) MUTATED       87      4     10      7      9
  AMP PEAK 43(19Q12) WILD-TYPE     77     76     96    126     38
D43V9, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                         87                           77
  CLUS_2                          4                           76
  CLUS_3                         10                           96
  CLUS_4                          7                          126
  CLUS_5                          9                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19Q12) MUTATED       22     88      7
  AMP PEAK 43(19Q12) WILD-TYPE    196     84    133
D43V10, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                         22                          196
  CLUS_2                         88                           84
  CLUS_3                          7                          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(19Q12) MUTATED       50      7     24     20
  AMP PEAK 43(19Q12) WILD-TYPE     66     91     68     72
D43V11, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                         50                           66
  CLUS_2                          7                           91
  CLUS_3                         24                           68
  CLUS_4                         20                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(19Q12) MUTATED       56     14     31
  AMP PEAK 43(19Q12) WILD-TYPE    107    118     72
D43V12, multiclass
        clus
vv       AMP PEAK 43(19Q12) MUTATED AMP PEAK 43(19Q12) WILD-TYPE
  CLUS_1                         56                          107
  CLUS_2                         14                          118
  CLUS_3                         31                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = AMP PEAK 44(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20P13) MUTATED        1      4      0      0
  AMP PEAK 44(20P13) WILD-TYPE     14     13     14      7
D44V1, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                          4                           13
  CLUS_3                          0                           14
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(20P13) MUTATED        2      3      0      0      0
  AMP PEAK 44(20P13) WILD-TYPE     12      6      7      7     16
D44V2, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20P13) MUTATED      104      4      3      6
  AMP PEAK 44(20P13) WILD-TYPE    104    174     96     48
D44V3, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                        104                          104
  CLUS_2                          4                          174
  CLUS_3                          3                           96
  CLUS_4                          6                           48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20P13) MUTATED       65     24     18
  AMP PEAK 44(20P13) WILD-TYPE     89     54    175
D44V4, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         65                           89
  CLUS_2                         24                           54
  CLUS_3                         18                          175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 44(20P13) MUTATED        2      9      5     16     29     16     11
  AMP PEAK 44(20P13) WILD-TYPE     37     72     47     40     55     52     42
D44V5, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                          2                           37
  CLUS_2                          9                           72
  CLUS_3                          5                           47
  CLUS_4                         16                           40
  CLUS_5                         29                           55
  CLUS_6                         16                           52
  CLUS_7                         11                           42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20P13) MUTATED        8     54     17      9
  AMP PEAK 44(20P13) WILD-TYPE    100    128     76     41
D44V6, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                          8                          100
  CLUS_2                         54                          128
  CLUS_3                         17                           76
  CLUS_4                          9                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20P13) MUTATED       80     10     12     14
  AMP PEAK 44(20P13) WILD-TYPE    108    113     81    119
D44V7, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         80                          108
  CLUS_2                         10                          113
  CLUS_3                         12                           81
  CLUS_4                         14                          119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 44(20P13) MUTATED       64      5     16      3     12     14      2
  AMP PEAK 44(20P13) WILD-TYPE     59     48     31     62     96     52     73
D44V8, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         64                           59
  CLUS_2                          5                           48
  CLUS_3                         16                           31
  CLUS_4                          3                           62
  CLUS_5                         12                           96
  CLUS_6                         14                           52
  CLUS_7                          2                           73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(20P13) MUTATED       75      8      9     13     11
  AMP PEAK 44(20P13) WILD-TYPE     89     72     97    120     36
D44V9, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         75                           89
  CLUS_2                          8                           72
  CLUS_3                          9                           97
  CLUS_4                         13                          120
  CLUS_5                         11                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20P13) MUTATED       30     74     12
  AMP PEAK 44(20P13) WILD-TYPE    188     98    128
D44V10, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         30                          188
  CLUS_2                         74                           98
  CLUS_3                         12                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20P13) MUTATED       40     13     20     25
  AMP PEAK 44(20P13) WILD-TYPE     76     85     72     67
D44V11, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         40                           76
  CLUS_2                         13                           85
  CLUS_3                         20                           72
  CLUS_4                         25                           67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20P13) MUTATED       57     17     24
  AMP PEAK 44(20P13) WILD-TYPE    106    115     79
D44V12, multiclass
        clus
vv       AMP PEAK 44(20P13) MUTATED AMP PEAK 44(20P13) WILD-TYPE
  CLUS_1                         57                          106
  CLUS_2                         17                          115
  CLUS_3                         24                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = AMP PEAK 45(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q11.21) MUTATED        2      9      0      0
  AMP PEAK 45(20Q11.21) WILD-TYPE     13      8     14      7
D45V1, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             9                               8
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20Q11.21) MUTATED        4      7      0      0      0
  AMP PEAK 45(20Q11.21) WILD-TYPE     10      2      7      7     16
D45V2, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             7                               2
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q11.21) MUTATED      139      3      3      7
  AMP PEAK 45(20Q11.21) WILD-TYPE     69    175     96     47
D45V3, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                           139                              69
  CLUS_2                             3                             175
  CLUS_3                             3                              96
  CLUS_4                             7                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q11.21) MUTATED       79     27     27
  AMP PEAK 45(20Q11.21) WILD-TYPE     75     51    166
D45V4, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                            79                              75
  CLUS_2                            27                              51
  CLUS_3                            27                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 45(20Q11.21) MUTATED        1      8      7     29     38     19
  AMP PEAK 45(20Q11.21) WILD-TYPE     38     73     45     27     46     49
                                 vv
clus                              CLUS_7
  AMP PEAK 45(20Q11.21) MUTATED       15
  AMP PEAK 45(20Q11.21) WILD-TYPE     38
D45V5, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                             1                              38
  CLUS_2                             8                              73
  CLUS_3                             7                              45
  CLUS_4                            29                              27
  CLUS_5                            38                              46
  CLUS_6                            19                              49
  CLUS_7                            15                              38
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q11.21) MUTATED        9     76     23      9
  AMP PEAK 45(20Q11.21) WILD-TYPE     99    106     70     41
D45V6, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                             9                              99
  CLUS_2                            76                             106
  CLUS_3                            23                              70
  CLUS_4                             9                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q11.21) MUTATED      105      9     17     20
  AMP PEAK 45(20Q11.21) WILD-TYPE     83    114     76    113
D45V7, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                           105                              83
  CLUS_2                             9                             114
  CLUS_3                            17                              76
  CLUS_4                            20                             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 45(20Q11.21) MUTATED       80      4     21      4     21     17
  AMP PEAK 45(20Q11.21) WILD-TYPE     43     49     26     61     87     49
                                 vv
clus                              CLUS_7
  AMP PEAK 45(20Q11.21) MUTATED        4
  AMP PEAK 45(20Q11.21) WILD-TYPE     71
D45V8, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                            80                              43
  CLUS_2                             4                              49
  CLUS_3                            21                              26
  CLUS_4                             4                              61
  CLUS_5                            21                              87
  CLUS_6                            17                              49
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20Q11.21) MUTATED       95      8     15     19     11
  AMP PEAK 45(20Q11.21) WILD-TYPE     69     72     91    114     36
D45V9, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                            95                              69
  CLUS_2                             8                              72
  CLUS_3                            15                              91
  CLUS_4                            19                             114
  CLUS_5                            11                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q11.21) MUTATED       32     96     20
  AMP PEAK 45(20Q11.21) WILD-TYPE    186     76    120
D45V10, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                            32                             186
  CLUS_2                            96                              76
  CLUS_3                            20                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q11.21) MUTATED       56     18     23     28
  AMP PEAK 45(20Q11.21) WILD-TYPE     60     80     69     64
D45V11, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                            56                              60
  CLUS_2                            18                              80
  CLUS_3                            23                              69
  CLUS_4                            28                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q11.21) MUTATED       69     26     30
  AMP PEAK 45(20Q11.21) WILD-TYPE     94    106     73
D45V12, multiclass
        clus
vv       AMP PEAK 45(20Q11.21) MUTATED AMP PEAK 45(20Q11.21) WILD-TYPE
  CLUS_1                            69                              94
  CLUS_2                            26                             106
  CLUS_3                            30                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = AMP PEAK 46(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.12) MUTATED        1      6      0      0
  AMP PEAK 46(20Q13.12) WILD-TYPE     14     11     14      7
D46V1, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                             6                              11
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q13.12) MUTATED        3      4      0      0      0
  AMP PEAK 46(20Q13.12) WILD-TYPE     11      5      7      7     16
D46V2, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.12) MUTATED      138      4      3      7
  AMP PEAK 46(20Q13.12) WILD-TYPE     70    174     96     47
D46V3, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                           138                              70
  CLUS_2                             4                             174
  CLUS_3                             3                              96
  CLUS_4                             7                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.12) MUTATED       83     28     27
  AMP PEAK 46(20Q13.12) WILD-TYPE     71     50    166
D46V4, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            83                              71
  CLUS_2                            28                              50
  CLUS_3                            27                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q13.12) MUTATED        3      7      7     25     38     18
  AMP PEAK 46(20Q13.12) WILD-TYPE     36     74     45     31     46     50
                                 vv
clus                              CLUS_7
  AMP PEAK 46(20Q13.12) MUTATED       15
  AMP PEAK 46(20Q13.12) WILD-TYPE     38
D46V5, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             7                              74
  CLUS_3                             7                              45
  CLUS_4                            25                              31
  CLUS_5                            38                              46
  CLUS_6                            18                              50
  CLUS_7                            15                              38
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.12) MUTATED       10     73     21      9
  AMP PEAK 46(20Q13.12) WILD-TYPE     98    109     72     41
D46V6, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            10                              98
  CLUS_2                            73                             109
  CLUS_3                            21                              72
  CLUS_4                             9                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.12) MUTATED      106     10     16     19
  AMP PEAK 46(20Q13.12) WILD-TYPE     82    113     77    114
D46V7, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                           106                              82
  CLUS_2                            10                             113
  CLUS_3                            16                              77
  CLUS_4                            19                             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q13.12) MUTATED       82      4     21      4     21     15
  AMP PEAK 46(20Q13.12) WILD-TYPE     41     49     26     61     87     51
                                 vv
clus                              CLUS_7
  AMP PEAK 46(20Q13.12) MUTATED        4
  AMP PEAK 46(20Q13.12) WILD-TYPE     71
D46V8, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            82                              41
  CLUS_2                             4                              49
  CLUS_3                            21                              26
  CLUS_4                             4                              61
  CLUS_5                            21                              87
  CLUS_6                            15                              51
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q13.12) MUTATED       98      8     13     20     12
  AMP PEAK 46(20Q13.12) WILD-TYPE     66     72     93    113     35
D46V9, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            98                              66
  CLUS_2                             8                              72
  CLUS_3                            13                              93
  CLUS_4                            20                             113
  CLUS_5                            12                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.12) MUTATED       35     97     19
  AMP PEAK 46(20Q13.12) WILD-TYPE    183     75    121
D46V10, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            35                             183
  CLUS_2                            97                              75
  CLUS_3                            19                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.12) MUTATED       54     18     25     32
  AMP PEAK 46(20Q13.12) WILD-TYPE     62     80     67     60
D46V11, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            54                              62
  CLUS_2                            18                              80
  CLUS_3                            25                              67
  CLUS_4                            32                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.12) MUTATED       75     24     30
  AMP PEAK 46(20Q13.12) WILD-TYPE     88    108     73
D46V12, multiclass
        clus
vv       AMP PEAK 46(20Q13.12) MUTATED AMP PEAK 46(20Q13.12) WILD-TYPE
  CLUS_1                            75                              88
  CLUS_2                            24                             108
  CLUS_3                            30                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = AMP PEAK 47(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.33) MUTATED        2      7      0      0
  AMP PEAK 47(20Q13.33) WILD-TYPE     13     10     14      7
D47V1, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             7                              10
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(20Q13.33) MUTATED        4      5      0      0      0
  AMP PEAK 47(20Q13.33) WILD-TYPE     10      4      7      7     16
D47V2, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             5                               4
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.33) MUTATED      140      4      3      6
  AMP PEAK 47(20Q13.33) WILD-TYPE     68    174     96     48
D47V3, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                           140                              68
  CLUS_2                             4                             174
  CLUS_3                             3                              96
  CLUS_4                             6                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.33) MUTATED       82     27     27
  AMP PEAK 47(20Q13.33) WILD-TYPE     72     51    166
D47V4, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            82                              72
  CLUS_2                            27                              51
  CLUS_3                            27                             166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(20Q13.33) MUTATED        4      9     10     23     40     17
  AMP PEAK 47(20Q13.33) WILD-TYPE     35     72     42     33     44     51
                                 vv
clus                              CLUS_7
  AMP PEAK 47(20Q13.33) MUTATED       13
  AMP PEAK 47(20Q13.33) WILD-TYPE     40
D47V5, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                             4                              35
  CLUS_2                             9                              72
  CLUS_3                            10                              42
  CLUS_4                            23                              33
  CLUS_5                            40                              44
  CLUS_6                            17                              51
  CLUS_7                            13                              40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.33) MUTATED       11     78     19      8
  AMP PEAK 47(20Q13.33) WILD-TYPE     97    104     74     42
D47V6, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            11                              97
  CLUS_2                            78                             104
  CLUS_3                            19                              74
  CLUS_4                             8                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.33) MUTATED      104     13     17     19
  AMP PEAK 47(20Q13.33) WILD-TYPE     84    110     76    114
D47V7, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                           104                              84
  CLUS_2                            13                             110
  CLUS_3                            17                              76
  CLUS_4                            19                             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(20Q13.33) MUTATED       78      4     24      5     22     16
  AMP PEAK 47(20Q13.33) WILD-TYPE     45     49     23     60     86     50
                                 vv
clus                              CLUS_7
  AMP PEAK 47(20Q13.33) MUTATED        4
  AMP PEAK 47(20Q13.33) WILD-TYPE     71
D47V8, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            78                              45
  CLUS_2                             4                              49
  CLUS_3                            24                              23
  CLUS_4                             5                              60
  CLUS_5                            22                              86
  CLUS_6                            16                              50
  CLUS_7                             4                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(20Q13.33) MUTATED       97      9     13     20     11
  AMP PEAK 47(20Q13.33) WILD-TYPE     67     71     93    113     36
D47V9, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            97                              67
  CLUS_2                             9                              71
  CLUS_3                            13                              93
  CLUS_4                            20                             113
  CLUS_5                            11                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.33) MUTATED       37     94     19
  AMP PEAK 47(20Q13.33) WILD-TYPE    181     78    121
D47V10, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            37                             181
  CLUS_2                            94                              78
  CLUS_3                            19                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(20Q13.33) MUTATED       53     17     25     32
  AMP PEAK 47(20Q13.33) WILD-TYPE     63     81     67     60
D47V11, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            53                              63
  CLUS_2                            17                              81
  CLUS_3                            25                              67
  CLUS_4                            32                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(20Q13.33) MUTATED       72     23     32
  AMP PEAK 47(20Q13.33) WILD-TYPE     91    109     71
D47V12, multiclass
        clus
vv       AMP PEAK 47(20Q13.33) MUTATED AMP PEAK 47(20Q13.33) WILD-TYPE
  CLUS_1                            72                              91
  CLUS_2                            23                             109
  CLUS_3                            32                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = AMP PEAK 48(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(22Q12.2) MUTATED        1      3      0      0
  AMP PEAK 48(22Q12.2) WILD-TYPE     14     14     14      7
D48V1, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            3                             14
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(22Q12.2) MUTATED        2      2      0      0      0
  AMP PEAK 48(22Q12.2) WILD-TYPE     12      7      7      7     16
D48V2, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(22Q12.2) MUTATED       57      0      2      3
  AMP PEAK 48(22Q12.2) WILD-TYPE    151    178     97     51
D48V3, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           57                            151
  CLUS_2                            0                            178
  CLUS_3                            2                             97
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(22Q12.2) MUTATED       40     16      1
  AMP PEAK 48(22Q12.2) WILD-TYPE    114     62    192
D48V4, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           40                            114
  CLUS_2                           16                             62
  CLUS_3                            1                            192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(22Q12.2) MUTATED        0      0      2     12     24      6
  AMP PEAK 48(22Q12.2) WILD-TYPE     39     81     50     44     60     62
                                vv
clus                             CLUS_7
  AMP PEAK 48(22Q12.2) MUTATED        8
  AMP PEAK 48(22Q12.2) WILD-TYPE     45
D48V5, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            0                             81
  CLUS_3                            2                             50
  CLUS_4                           12                             44
  CLUS_5                           24                             60
  CLUS_6                            6                             62
  CLUS_7                            8                             45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(22Q12.2) MUTATED        1     41      6      4
  AMP PEAK 48(22Q12.2) WILD-TYPE    107    141     87     46
D48V6, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           41                            141
  CLUS_3                            6                             87
  CLUS_4                            4                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(22Q12.2) MUTATED       54      1      6      0
  AMP PEAK 48(22Q12.2) WILD-TYPE    134    122     87    133
D48V7, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           54                            134
  CLUS_2                            1                            122
  CLUS_3                            6                             87
  CLUS_4                            0                            133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(22Q12.2) MUTATED       43      1     15      0      2      0
  AMP PEAK 48(22Q12.2) WILD-TYPE     80     52     32     65    106     66
                                vv
clus                             CLUS_7
  AMP PEAK 48(22Q12.2) MUTATED        0
  AMP PEAK 48(22Q12.2) WILD-TYPE     75
D48V8, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           43                             80
  CLUS_2                            1                             52
  CLUS_3                           15                             32
  CLUS_4                            0                             65
  CLUS_5                            2                            106
  CLUS_6                            0                             66
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(22Q12.2) MUTATED       47      1      9      0      4
  AMP PEAK 48(22Q12.2) WILD-TYPE    117     79     97    133     43
D48V9, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           47                            117
  CLUS_2                            1                             79
  CLUS_3                            9                             97
  CLUS_4                            0                            133
  CLUS_5                            4                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(22Q12.2) MUTATED        3     58      0
  AMP PEAK 48(22Q12.2) WILD-TYPE    215    114    140
D48V10, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                            3                            215
  CLUS_2                           58                            114
  CLUS_3                            0                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(22Q12.2) MUTATED       29      1      6     20
  AMP PEAK 48(22Q12.2) WILD-TYPE     87     97     86     72
D48V11, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           29                             87
  CLUS_2                            1                             97
  CLUS_3                            6                             86
  CLUS_4                           20                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(22Q12.2) MUTATED       40      2     14
  AMP PEAK 48(22Q12.2) WILD-TYPE    123    130     89
D48V12, multiclass
        clus
vv       AMP PEAK 48(22Q12.2) MUTATED AMP PEAK 48(22Q12.2) WILD-TYPE
  CLUS_1                           40                            123
  CLUS_2                            2                            130
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = AMP PEAK 49(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XP11.23) MUTATED        1      4      2      0
  AMP PEAK 49(XP11.23) WILD-TYPE     14     13     12      7
D49V1, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            4                             13
  CLUS_3                            2                             12
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(XP11.23) MUTATED        2      2      1      1      1
  AMP PEAK 49(XP11.23) WILD-TYPE     12      7      6      6     15
D49V2, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XP11.23) MUTATED       61      2     20      7
  AMP PEAK 49(XP11.23) WILD-TYPE    147    176     79     47
D49V3, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           61                            147
  CLUS_2                            2                            176
  CLUS_3                           20                             79
  CLUS_4                            7                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XP11.23) MUTATED       32     20     19
  AMP PEAK 49(XP11.23) WILD-TYPE    122     58    174
D49V4, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           32                            122
  CLUS_2                           20                             58
  CLUS_3                           19                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(XP11.23) MUTATED        6     10      5     10     19     11
  AMP PEAK 49(XP11.23) WILD-TYPE     33     71     47     46     65     57
                                vv
clus                             CLUS_7
  AMP PEAK 49(XP11.23) MUTATED        9
  AMP PEAK 49(XP11.23) WILD-TYPE     44
D49V5, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           10                             71
  CLUS_3                            5                             47
  CLUS_4                           10                             46
  CLUS_5                           19                             65
  CLUS_6                           11                             57
  CLUS_7                            9                             44
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XP11.23) MUTATED       15     39     11      5
  AMP PEAK 49(XP11.23) WILD-TYPE     93    143     82     45
D49V6, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           15                             93
  CLUS_2                           39                            143
  CLUS_3                           11                             82
  CLUS_4                            5                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XP11.23) MUTATED       52     14      9     15
  AMP PEAK 49(XP11.23) WILD-TYPE    136    109     84    118
D49V7, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           52                            136
  CLUS_2                           14                            109
  CLUS_3                            9                             84
  CLUS_4                           15                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(XP11.23) MUTATED       38      5     10      6     14      9
  AMP PEAK 49(XP11.23) WILD-TYPE     85     48     37     59     94     57
                                vv
clus                             CLUS_7
  AMP PEAK 49(XP11.23) MUTATED        8
  AMP PEAK 49(XP11.23) WILD-TYPE     67
D49V8, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           38                             85
  CLUS_2                            5                             48
  CLUS_3                           10                             37
  CLUS_4                            6                             59
  CLUS_5                           14                             94
  CLUS_6                            9                             57
  CLUS_7                            8                             67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(XP11.23) MUTATED       43     11     12     16      7
  AMP PEAK 49(XP11.23) WILD-TYPE    121     69     94    117     40
D49V9, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           43                            121
  CLUS_2                           11                             69
  CLUS_3                           12                             94
  CLUS_4                           16                            117
  CLUS_5                            7                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XP11.23) MUTATED       28     45     16
  AMP PEAK 49(XP11.23) WILD-TYPE    190    127    124
D49V10, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           28                            190
  CLUS_2                           45                            127
  CLUS_3                           16                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XP11.23) MUTATED       33     10     12     13
  AMP PEAK 49(XP11.23) WILD-TYPE     83     88     80     79
D49V11, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           33                             83
  CLUS_2                           10                             88
  CLUS_3                           12                             80
  CLUS_4                           13                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XP11.23) MUTATED       35     12     21
  AMP PEAK 49(XP11.23) WILD-TYPE    128    120     82
D49V12, multiclass
        clus
vv       AMP PEAK 49(XP11.23) MUTATED AMP PEAK 49(XP11.23) WILD-TYPE
  CLUS_1                           35                            128
  CLUS_2                           12                            120
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = AMP PEAK 50(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XQ28) MUTATED        1      6      2      0
  AMP PEAK 50(XQ28) WILD-TYPE     14     11     12      7
D50V1, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                         1                          14
  CLUS_2                         6                          11
  CLUS_3                         2                          12
  CLUS_4                         0                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(XQ28) MUTATED        1      5      1      1      1
  AMP PEAK 50(XQ28) WILD-TYPE     13      4      6      6     15
D50V2, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           6
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XQ28) MUTATED       63      3     21      6
  AMP PEAK 50(XQ28) WILD-TYPE    145    175     78     48
D50V3, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        63                         145
  CLUS_2                         3                         175
  CLUS_3                        21                          78
  CLUS_4                         6                          48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XQ28) MUTATED       30     16     25
  AMP PEAK 50(XQ28) WILD-TYPE    124     62    168
D50V4, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        30                         124
  CLUS_2                        16                          62
  CLUS_3                        25                         168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 50(XQ28) MUTATED        5     11      6     12     26     12      8
  AMP PEAK 50(XQ28) WILD-TYPE     34     70     46     44     58     56     45
D50V5, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                         5                          34
  CLUS_2                        11                          70
  CLUS_3                         6                          46
  CLUS_4                        12                          44
  CLUS_5                        26                          58
  CLUS_6                        12                          56
  CLUS_7                         8                          45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XQ28) MUTATED       16     45     14      5
  AMP PEAK 50(XQ28) WILD-TYPE     92    137     79     45
D50V6, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        16                          92
  CLUS_2                        45                         137
  CLUS_3                        14                          79
  CLUS_4                         5                          45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XQ28) MUTATED       47     15     14     17
  AMP PEAK 50(XQ28) WILD-TYPE    141    108     79    116
D50V7, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        47                         141
  CLUS_2                        15                         108
  CLUS_3                        14                          79
  CLUS_4                        17                         116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 50(XQ28) MUTATED       37      6     10      6     17      9      8
  AMP PEAK 50(XQ28) WILD-TYPE     86     47     37     59     91     57     67
D50V8, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        37                          86
  CLUS_2                         6                          47
  CLUS_3                        10                          37
  CLUS_4                         6                          59
  CLUS_5                        17                          91
  CLUS_6                         9                          57
  CLUS_7                         8                          67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 50(XQ28) MUTATED       42     13     15     15      5
  AMP PEAK 50(XQ28) WILD-TYPE    122     67     91    118     42
D50V9, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        42                         122
  CLUS_2                        13                          67
  CLUS_3                        15                          91
  CLUS_4                        15                         118
  CLUS_5                         5                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XQ28) MUTATED       33     41     16
  AMP PEAK 50(XQ28) WILD-TYPE    185    131    124
D50V10, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        33                         185
  CLUS_2                        41                         131
  CLUS_3                        16                         124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 50(XQ28) MUTATED       35     13     14      8
  AMP PEAK 50(XQ28) WILD-TYPE     81     85     78     84
D50V11, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        35                          81
  CLUS_2                        13                          85
  CLUS_3                        14                          78
  CLUS_4                         8                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 50(XQ28) MUTATED       34     17     19
  AMP PEAK 50(XQ28) WILD-TYPE    129    115     84
D50V12, multiclass
        clus
vv       AMP PEAK 50(XQ28) MUTATED AMP PEAK 50(XQ28) WILD-TYPE
  CLUS_1                        34                         129
  CLUS_2                        17                         115
  CLUS_3                        19                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        2      6      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     13     11     14      7
D51V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      5      0      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     11      4      7      7     16
D51V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       67      1      1      2
  DEL PEAK  1(1P36.21) WILD-TYPE    141    177     98     52
D51V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           67                            141
  CLUS_2                            1                            177
  CLUS_3                            1                             98
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       33     19      8
  DEL PEAK  1(1P36.21) WILD-TYPE    121     59    185
D51V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           33                            121
  CLUS_2                           19                             59
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        1      0      3     11     19      9
  DEL PEAK  1(1P36.21) WILD-TYPE     38     81     49     45     65     59
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED       10
  DEL PEAK  1(1P36.21) WILD-TYPE     43
D51V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            0                             81
  CLUS_3                            3                             49
  CLUS_4                           11                             45
  CLUS_5                           19                             65
  CLUS_6                            9                             59
  CLUS_7                           10                             43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        1     35      9      8
  DEL PEAK  1(1P36.21) WILD-TYPE    107    147     84     42
D51V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           35                            147
  CLUS_3                            9                             84
  CLUS_4                            8                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       53      6      9      3
  DEL PEAK  1(1P36.21) WILD-TYPE    135    117     84    130
D51V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           53                            135
  CLUS_2                            6                            117
  CLUS_3                            9                             84
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED       42      1      9      4     12      3
  DEL PEAK  1(1P36.21) WILD-TYPE     81     52     38     61     96     63
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        0
  DEL PEAK  1(1P36.21) WILD-TYPE     75
D51V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           42                             81
  CLUS_2                            1                             52
  CLUS_3                            9                             38
  CLUS_4                            4                             61
  CLUS_5                           12                             96
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED       45      5      6      5      7
  DEL PEAK  1(1P36.21) WILD-TYPE    119     75    100    128     40
D51V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           45                            119
  CLUS_2                            5                             75
  CLUS_3                            6                            100
  CLUS_4                            5                            128
  CLUS_5                            7                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       16     49      3
  DEL PEAK  1(1P36.21) WILD-TYPE    202    123    137
D51V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           16                            202
  CLUS_2                           49                            123
  CLUS_3                            3                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       21      6     22     11
  DEL PEAK  1(1P36.21) WILD-TYPE     95     92     70     81
D51V11, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           21                             95
  CLUS_2                            6                             92
  CLUS_3                           22                             70
  CLUS_4                           11                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       29      8     23
  DEL PEAK  1(1P36.21) WILD-TYPE    134    124     80
D51V12, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                            8                            124
  CLUS_3                           23                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        1      5      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     14     12     14      7
D52V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        2      4      0      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     12      5      7      7     16
D52V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       79      1      1      2
  DEL PEAK  2(1P36.11) WILD-TYPE    129    177     98     52
D52V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           79                            129
  CLUS_2                            1                            177
  CLUS_3                            1                             98
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       47     19      8
  DEL PEAK  2(1P36.11) WILD-TYPE    107     59    185
D52V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           47                            107
  CLUS_2                           19                             59
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        2      0      5     16     22      9
  DEL PEAK  2(1P36.11) WILD-TYPE     37     81     47     40     62     59
                                vv
clus                             CLUS_7
  DEL PEAK  2(1P36.11) MUTATED       11
  DEL PEAK  2(1P36.11) WILD-TYPE     42
D52V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            0                             81
  CLUS_3                            5                             47
  CLUS_4                           16                             40
  CLUS_5                           22                             62
  CLUS_6                            9                             59
  CLUS_7                           11                             42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        2     43     13      7
  DEL PEAK  2(1P36.11) WILD-TYPE    106    139     80     43
D52V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                            106
  CLUS_2                           43                            139
  CLUS_3                           13                             80
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       65      6      9      3
  DEL PEAK  2(1P36.11) WILD-TYPE    123    117     84    130
D52V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           65                            123
  CLUS_2                            6                            117
  CLUS_3                            9                             84
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED       51      1     10      4     14      3
  DEL PEAK  2(1P36.11) WILD-TYPE     72     52     37     61     94     63
                                vv
clus                             CLUS_7
  DEL PEAK  2(1P36.11) MUTATED        0
  DEL PEAK  2(1P36.11) WILD-TYPE     75
D52V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           51                             72
  CLUS_2                            1                             52
  CLUS_3                           10                             37
  CLUS_4                            4                             61
  CLUS_5                           14                             94
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED       58      4      6      6      6
  DEL PEAK  2(1P36.11) WILD-TYPE    106     76    100    127     41
D52V9, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           58                            106
  CLUS_2                            4                             76
  CLUS_3                            6                            100
  CLUS_4                            6                            127
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       19     58      3
  DEL PEAK  2(1P36.11) WILD-TYPE    199    114    137
D52V10, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           19                            199
  CLUS_2                           58                            114
  CLUS_3                            3                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       33      7     19     14
  DEL PEAK  2(1P36.11) WILD-TYPE     83     91     73     78
D52V11, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           33                             83
  CLUS_2                            7                             91
  CLUS_3                           19                             73
  CLUS_4                           14                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       43      8     22
  DEL PEAK  2(1P36.11) WILD-TYPE    120    124     81
D52V12, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           43                            120
  CLUS_2                            8                            124
  CLUS_3                           22                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     15     16     14      7
D53V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14      8      7      7     16
D53V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       25      0      1      0
  DEL PEAK  3(2P25.3) WILD-TYPE    183    178     98     54
D53V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          25                           183
  CLUS_2                           0                           178
  CLUS_3                           1                            98
  CLUS_4                           0                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       17      5      3
  DEL PEAK  3(2P25.3) WILD-TYPE    137     73    190
D53V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          17                           137
  CLUS_2                           5                            73
  CLUS_3                           3                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        1      1      0      6      6      1
  DEL PEAK  3(2P25.3) WILD-TYPE     38     80     52     50     78     67
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        4
  DEL PEAK  3(2P25.3) WILD-TYPE     49
D53V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           0                            52
  CLUS_4                           6                            50
  CLUS_5                           6                            78
  CLUS_6                           1                            67
  CLUS_7                           4                            49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        1     10      4      4
  DEL PEAK  3(2P25.3) WILD-TYPE    107    172     89     46
D53V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          10                           172
  CLUS_3                           4                            89
  CLUS_4                           4                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       21      1      1      3
  DEL PEAK  3(2P25.3) WILD-TYPE    167    122     92    130
D53V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                           167
  CLUS_2                           1                           122
  CLUS_3                           1                            92
  CLUS_4                           3                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       16      1      3      0      3      3
  DEL PEAK  3(2P25.3) WILD-TYPE    107     52     44     65    105     63
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        0
  DEL PEAK  3(2P25.3) WILD-TYPE     75
D53V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          16                           107
  CLUS_2                           1                            52
  CLUS_3                           3                            44
  CLUS_4                           0                            65
  CLUS_5                           3                           105
  CLUS_6                           3                            63
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       18      2      0      3      3
  DEL PEAK  3(2P25.3) WILD-TYPE    146     78    106    130     44
D53V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          18                           146
  CLUS_2                           2                            78
  CLUS_3                           0                           106
  CLUS_4                           3                           130
  CLUS_5                           3                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        6     17      3
  DEL PEAK  3(2P25.3) WILD-TYPE    212    155    137
D53V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           6                           212
  CLUS_2                          17                           155
  CLUS_3                           3                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       11      3      5      4
  DEL PEAK  3(2P25.3) WILD-TYPE    105     95     87     88
D53V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          11                           105
  CLUS_2                           3                            95
  CLUS_3                           5                            87
  CLUS_4                           4                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       12      4      7
  DEL PEAK  3(2P25.3) WILD-TYPE    151    128     96
D53V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          12                           151
  CLUS_2                           4                           128
  CLUS_3                           7                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0      5      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     15     12     14      7
D54V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           5                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        1      4      0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     13      5      7      7     16
D54V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       49      0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    159    178     99     54
D54V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          49                           159
  CLUS_2                           0                           178
  CLUS_3                           0                            99
  CLUS_4                           0                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       24     13      6
  DEL PEAK  4(2Q22.1) WILD-TYPE    130     65    187
D54V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          24                           130
  CLUS_2                          13                            65
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        0      1      2      6     19      7
  DEL PEAK  4(2Q22.1) WILD-TYPE     39     80     50     50     65     61
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED        5
  DEL PEAK  4(2Q22.1) WILD-TYPE     48
D54V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           1                            80
  CLUS_3                           2                            50
  CLUS_4                           6                            50
  CLUS_5                          19                            65
  CLUS_6                           7                            61
  CLUS_7                           5                            48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        1     22     13      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    107    160     80     46
D54V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          22                           160
  CLUS_3                          13                            80
  CLUS_4                           4                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       41      0      3      5
  DEL PEAK  4(2Q22.1) WILD-TYPE    147    123     90    128
D54V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          41                           147
  CLUS_2                           0                           123
  CLUS_3                           3                            90
  CLUS_4                           5                           128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED       32      0      3      0      9      5
  DEL PEAK  4(2Q22.1) WILD-TYPE     91     53     44     65     99     61
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q22.1) MUTATED        0
  DEL PEAK  4(2Q22.1) WILD-TYPE     75
D54V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          32                            91
  CLUS_2                           0                            53
  CLUS_3                           3                            44
  CLUS_4                           0                            65
  CLUS_5                           9                            99
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED       36      4      3      4      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    128     76    103    129     47
D54V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          36                           128
  CLUS_2                           4                            76
  CLUS_3                           3                           103
  CLUS_4                           4                           129
  CLUS_5                           0                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       14     29      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    204    143    136
D54V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          14                           204
  CLUS_2                          29                           143
  CLUS_3                           4                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       25      6      4      7
  DEL PEAK  4(2Q22.1) WILD-TYPE     91     92     88     85
D54V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          25                            91
  CLUS_2                           6                            92
  CLUS_3                           4                            88
  CLUS_4                           7                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       27      7      8
  DEL PEAK  4(2Q22.1) WILD-TYPE    136    125     95
D54V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          27                           136
  CLUS_2                           7                           125
  CLUS_3                           8                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     15     16     14      7
D55V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14      8      7      7     16
D55V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       49      1      0      2
  DEL PEAK  5(2Q37.3) WILD-TYPE    159    177     99     52
D55V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          49                           159
  CLUS_2                           1                           177
  CLUS_3                           0                            99
  CLUS_4                           2                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       30     10      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    124     68    185
D55V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          30                           124
  CLUS_2                          10                            68
  CLUS_3                           8                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        1      1      3      7     13      4
  DEL PEAK  5(2Q37.3) WILD-TYPE     38     80     49     49     71     64
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        8
  DEL PEAK  5(2Q37.3) WILD-TYPE     45
D55V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           3                            49
  CLUS_4                           7                            49
  CLUS_5                          13                            71
  CLUS_6                           4                            64
  CLUS_7                           8                            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        2     24      7      4
  DEL PEAK  5(2Q37.3) WILD-TYPE    106    158     86     46
D55V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           2                           106
  CLUS_2                          24                           158
  CLUS_3                           7                            86
  CLUS_4                           4                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       37      1      6      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    151    122     87    126
D55V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          37                           151
  CLUS_2                           1                           122
  CLUS_3                           6                            87
  CLUS_4                           7                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       23      0      9      3     10      6
  DEL PEAK  5(2Q37.3) WILD-TYPE    100     53     38     62     98     60
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        0
  DEL PEAK  5(2Q37.3) WILD-TYPE     75
D55V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                           100
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           3                            62
  CLUS_5                          10                            98
  CLUS_6                           6                            60
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       31      4      5      7      4
  DEL PEAK  5(2Q37.3) WILD-TYPE    133     76    101    126     43
D55V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          31                           133
  CLUS_2                           4                            76
  CLUS_3                           5                           101
  CLUS_4                           7                           126
  CLUS_5                           4                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       14     29      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    204    143    132
D55V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          14                           204
  CLUS_2                          29                           143
  CLUS_3                           8                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       15      8      8     15
  DEL PEAK  5(2Q37.3) WILD-TYPE    101     90     84     77
D55V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          15                           101
  CLUS_2                           8                            90
  CLUS_3                           8                            84
  CLUS_4                          15                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       23     10     13
  DEL PEAK  5(2Q37.3) WILD-TYPE    140    122     90
D55V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                           140
  CLUS_2                          10                           122
  CLUS_3                          13                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        1      5      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     14     12     14      7
D56V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           5                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        2      4      0      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     12      5      7      7     16
D56V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       75      0      1      3
  DEL PEAK  6(3P14.2) WILD-TYPE    133    178     98     51
D56V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          75                           133
  CLUS_2                           0                           178
  CLUS_3                           1                            98
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       45     17      6
  DEL PEAK  6(3P14.2) WILD-TYPE    109     61    187
D56V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          45                           109
  CLUS_2                          17                            61
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        2      1      4     12     28     10
  DEL PEAK  6(3P14.2) WILD-TYPE     37     80     48     44     56     58
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P14.2) MUTATED        6
  DEL PEAK  6(3P14.2) WILD-TYPE     47
D56V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           1                            80
  CLUS_3                           4                            48
  CLUS_4                          12                            44
  CLUS_5                          28                            56
  CLUS_6                          10                            58
  CLUS_7                           6                            47
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        2     47     12      2
  DEL PEAK  6(3P14.2) WILD-TYPE    106    135     81     48
D56V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           2                           106
  CLUS_2                          47                           135
  CLUS_3                          12                            81
  CLUS_4                           2                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       65      3      6      4
  DEL PEAK  6(3P14.2) WILD-TYPE    123    120     87    129
D56V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          65                           123
  CLUS_2                           3                           120
  CLUS_3                           6                            87
  CLUS_4                           4                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED       49      0     12      0     12      5
  DEL PEAK  6(3P14.2) WILD-TYPE     74     53     35     65     96     61
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P14.2) MUTATED        0
  DEL PEAK  6(3P14.2) WILD-TYPE     75
D56V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          49                            74
  CLUS_2                           0                            53
  CLUS_3                          12                            35
  CLUS_4                           0                            65
  CLUS_5                          12                            96
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       56      5      6      4      6
  DEL PEAK  6(3P14.2) WILD-TYPE    108     75    100    129     41
D56V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          56                           108
  CLUS_2                           5                            75
  CLUS_3                           6                           100
  CLUS_4                           4                           129
  CLUS_5                           6                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       19     55      3
  DEL PEAK  6(3P14.2) WILD-TYPE    199    117    137
D56V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          19                           199
  CLUS_2                          55                           117
  CLUS_3                           3                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       28      7     13     18
  DEL PEAK  6(3P14.2) WILD-TYPE     88     91     79     74
D56V11, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          28                            88
  CLUS_2                           7                            91
  CLUS_3                          13                            79
  CLUS_4                          18                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       43      7     16
  DEL PEAK  6(3P14.2) WILD-TYPE    120    125     87
D56V12, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          43                           120
  CLUS_2                           7                           125
  CLUS_3                          16                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1      3      1      0
  DEL PEAK  7(3Q13.31) WILD-TYPE     14     14     13      7
D57V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            3                             14
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED        1      3      0      0      1
  DEL PEAK  7(3Q13.31) WILD-TYPE     13      6      7      7     15
D57V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       36      2      2      3
  DEL PEAK  7(3Q13.31) WILD-TYPE    172    176     97     51
D57V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           36                            172
  CLUS_2                            2                            176
  CLUS_3                            2                             97
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       19      9      8
  DEL PEAK  7(3Q13.31) WILD-TYPE    135     69    185
D57V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                            135
  CLUS_2                            9                             69
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        0      3      4      4     11      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     39     78     48     52     73     63
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        7
  DEL PEAK  7(3Q13.31) WILD-TYPE     46
D57V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            3                             78
  CLUS_3                            4                             48
  CLUS_4                            4                             52
  CLUS_5                           11                             73
  CLUS_6                            5                             63
  CLUS_7                            7                             46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1     21      8      4
  DEL PEAK  7(3Q13.31) WILD-TYPE    107    161     85     46
D57V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           21                            161
  CLUS_3                            8                             85
  CLUS_4                            4                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       33      4      1      5
  DEL PEAK  7(3Q13.31) WILD-TYPE    155    119     92    128
D57V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           33                            155
  CLUS_2                            4                            119
  CLUS_3                            1                             92
  CLUS_4                            5                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       28      2      4      0      3      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     95     51     43     65    105     61
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        1
  DEL PEAK  7(3Q13.31) WILD-TYPE     74
D57V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           28                             95
  CLUS_2                            2                             51
  CLUS_3                            4                             43
  CLUS_4                            0                             65
  CLUS_5                            3                            105
  CLUS_6                            5                             61
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       28      3      2      5      3
  DEL PEAK  7(3Q13.31) WILD-TYPE    136     77    104    128     44
D57V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           28                            136
  CLUS_2                            3                             77
  CLUS_3                            2                            104
  CLUS_4                            5                            128
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       10     27      4
  DEL PEAK  7(3Q13.31) WILD-TYPE    208    145    136
D57V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           10                            208
  CLUS_2                           27                            145
  CLUS_3                            4                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       16      4      9      5
  DEL PEAK  7(3Q13.31) WILD-TYPE    100     94     83     87
D57V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           16                            100
  CLUS_2                            4                             94
  CLUS_3                            9                             83
  CLUS_4                            5                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       15      6     13
  DEL PEAK  7(3Q13.31) WILD-TYPE    148    126     90
D57V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           15                            148
  CLUS_2                            6                            126
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      6      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     14     11     14      7
D58V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED        2      5      0      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     12      4      7      7     16
D58V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       90      1      1      2
  DEL PEAK  8(4P16.3) WILD-TYPE    118    177     98     52
D58V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          90                           118
  CLUS_2                           1                           177
  CLUS_3                           1                            98
  CLUS_4                           2                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       55     18      9
  DEL PEAK  8(4P16.3) WILD-TYPE     99     60    184
D58V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          55                            99
  CLUS_2                          18                            60
  CLUS_3                           9                           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        4      0      5     14     29     10
  DEL PEAK  8(4P16.3) WILD-TYPE     35     81     47     42     55     58
                               vv
clus                            CLUS_7
  DEL PEAK  8(4P16.3) MUTATED       13
  DEL PEAK  8(4P16.3) WILD-TYPE     40
D58V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           0                            81
  CLUS_3                           5                            47
  CLUS_4                          14                            42
  CLUS_5                          29                            55
  CLUS_6                          10                            58
  CLUS_7                          13                            40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        5     46     15      9
  DEL PEAK  8(4P16.3) WILD-TYPE    103    136     78     41
D58V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           5                           103
  CLUS_2                          46                           136
  CLUS_3                          15                            78
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       71      5     11      7
  DEL PEAK  8(4P16.3) WILD-TYPE    117    118     82    126
D58V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          71                           117
  CLUS_2                           5                           118
  CLUS_3                          11                            82
  CLUS_4                           7                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED       55      1     15      2     14      6
  DEL PEAK  8(4P16.3) WILD-TYPE     68     52     32     63     94     60
                               vv
clus                            CLUS_7
  DEL PEAK  8(4P16.3) MUTATED        1
  DEL PEAK  8(4P16.3) WILD-TYPE     74
D58V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          55                            68
  CLUS_2                           1                            52
  CLUS_3                          15                            32
  CLUS_4                           2                            63
  CLUS_5                          14                            94
  CLUS_6                           6                            60
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       66      6      3      8      8
  DEL PEAK  8(4P16.3) WILD-TYPE     98     74    103    125     39
D58V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          66                            98
  CLUS_2                           6                            74
  CLUS_3                           3                           103
  CLUS_4                           8                           125
  CLUS_5                           8                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       23     62      6
  DEL PEAK  8(4P16.3) WILD-TYPE    195    110    134
D58V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          23                           195
  CLUS_2                          62                           110
  CLUS_3                           6                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       37      7     20     16
  DEL PEAK  8(4P16.3) WILD-TYPE     79     91     72     76
D58V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          37                            79
  CLUS_2                           7                            91
  CLUS_3                          20                            72
  CLUS_4                          16                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       44     11     25
  DEL PEAK  8(4P16.3) WILD-TYPE    119    121     78
D58V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          44                           119
  CLUS_2                          11                           121
  CLUS_3                          25                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK  9(4P15.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED        1      6      0      0
  DEL PEAK  9(4P15.31) WILD-TYPE     14     11     14      7
D59V1, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.31) MUTATED        3      4      0      0      0
  DEL PEAK  9(4P15.31) WILD-TYPE     11      5      7      7     16
D59V2, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED       95      1      0      3
  DEL PEAK  9(4P15.31) WILD-TYPE    113    177     99     51
D59V3, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           95                            113
  CLUS_2                            1                            177
  CLUS_3                            0                             99
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       60     20      8
  DEL PEAK  9(4P15.31) WILD-TYPE     94     58    185
D59V4, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           60                             94
  CLUS_2                           20                             58
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.31) MUTATED        4      1      4     19     30     10
  DEL PEAK  9(4P15.31) WILD-TYPE     35     80     48     37     54     58
                                vv
clus                             CLUS_7
  DEL PEAK  9(4P15.31) MUTATED       12
  DEL PEAK  9(4P15.31) WILD-TYPE     41
D59V5, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            1                             80
  CLUS_3                            4                             48
  CLUS_4                           19                             37
  CLUS_5                           30                             54
  CLUS_6                           10                             58
  CLUS_7                           12                             41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED        5     53     15      7
  DEL PEAK  9(4P15.31) WILD-TYPE    103    129     78     43
D59V6, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            5                            103
  CLUS_2                           53                            129
  CLUS_3                           15                             78
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED       76      5     11      7
  DEL PEAK  9(4P15.31) WILD-TYPE    112    118     82    126
D59V7, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           76                            112
  CLUS_2                            5                            118
  CLUS_3                           11                             82
  CLUS_4                            7                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.31) MUTATED       58      1     16      2     16      5
  DEL PEAK  9(4P15.31) WILD-TYPE     65     52     31     63     92     61
                                vv
clus                             CLUS_7
  DEL PEAK  9(4P15.31) MUTATED        1
  DEL PEAK  9(4P15.31) WILD-TYPE     74
D59V8, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           58                             65
  CLUS_2                            1                             52
  CLUS_3                           16                             31
  CLUS_4                            2                             63
  CLUS_5                           16                             92
  CLUS_6                            5                             61
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.31) MUTATED       73      5      4      7      8
  DEL PEAK  9(4P15.31) WILD-TYPE     91     75    102    126     39
D59V9, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           73                             91
  CLUS_2                            5                             75
  CLUS_3                            4                            102
  CLUS_4                            7                            126
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       22     70      5
  DEL PEAK  9(4P15.31) WILD-TYPE    196    102    135
D59V10, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           22                            196
  CLUS_2                           70                            102
  CLUS_3                            5                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED       43      6     20     18
  DEL PEAK  9(4P15.31) WILD-TYPE     73     92     72     74
D59V11, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           43                             73
  CLUS_2                            6                             92
  CLUS_3                           20                             72
  CLUS_4                           18                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       49     10     28
  DEL PEAK  9(4P15.31) WILD-TYPE    114    122     75
D59V12, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           49                            114
  CLUS_2                           10                            122
  CLUS_3                           28                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        1      7      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     14     10     14      7
D60V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        2      6      0      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     12      3      7      7     16
D60V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED      105      0      0      1
  DEL PEAK 10(4Q22.1) WILD-TYPE    103    178     99     53
D60V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                         105                           103
  CLUS_2                           0                           178
  CLUS_3                           0                            99
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       63     23      6
  DEL PEAK 10(4Q22.1) WILD-TYPE     91     55    187
D60V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          63                            91
  CLUS_2                          23                            55
  CLUS_3                           6                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED        3      2      3     16     32     14
  DEL PEAK 10(4Q22.1) WILD-TYPE     36     79     49     40     52     54
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q22.1) MUTATED       14
  DEL PEAK 10(4Q22.1) WILD-TYPE     39
D60V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           2                            79
  CLUS_3                           3                            49
  CLUS_4                          16                            40
  CLUS_5                          32                            52
  CLUS_6                          14                            54
  CLUS_7                          14                            39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        4     53     18      9
  DEL PEAK 10(4Q22.1) WILD-TYPE    104    129     75     41
D60V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                          53                           129
  CLUS_3                          18                            75
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       87      4      9      6
  DEL PEAK 10(4Q22.1) WILD-TYPE    101    119     84    127
D60V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          87                           101
  CLUS_2                           4                           119
  CLUS_3                           9                            84
  CLUS_4                           6                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       68      1     12      2     18      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     55     52     35     63     90     61
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q22.1) MUTATED        0
  DEL PEAK 10(4Q22.1) WILD-TYPE     75
D60V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          68                            55
  CLUS_2                           1                            52
  CLUS_3                          12                            35
  CLUS_4                           2                            63
  CLUS_5                          18                            90
  CLUS_6                           5                            61
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED       74      4      8      6     11
  DEL PEAK 10(4Q22.1) WILD-TYPE     90     76     98    127     36
D60V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          74                            90
  CLUS_2                           4                            76
  CLUS_3                           8                            98
  CLUS_4                           6                           127
  CLUS_5                          11                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       24     76      3
  DEL PEAK 10(4Q22.1) WILD-TYPE    194     96    137
D60V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          24                           194
  CLUS_2                          76                            96
  CLUS_3                           3                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       44      5     22     19
  DEL PEAK 10(4Q22.1) WILD-TYPE     72     93     70     73
D60V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          44                            72
  CLUS_2                           5                            93
  CLUS_3                          22                            70
  CLUS_4                          19                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       51      8     31
  DEL PEAK 10(4Q22.1) WILD-TYPE    112    124     72
D60V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          51                           112
  CLUS_2                           8                           124
  CLUS_3                          31                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 11(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        1      7      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     14     10     14      7
D61V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        2      6      0      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     12      3      7      7     16
D61V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED      125      2      0      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     83    176     99     51
D61V3, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         125                            83
  CLUS_2                           2                           176
  CLUS_3                           0                            99
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       70     31     13
  DEL PEAK 11(4Q34.3) WILD-TYPE     84     47    180
D61V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          70                            84
  CLUS_2                          31                            47
  CLUS_3                          13                           180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        5      3      7     19     36     17
  DEL PEAK 11(4Q34.3) WILD-TYPE     34     78     45     37     48     51
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q34.3) MUTATED       17
  DEL PEAK 11(4Q34.3) WILD-TYPE     36
D61V5, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           3                            78
  CLUS_3                           7                            45
  CLUS_4                          19                            37
  CLUS_5                          36                            48
  CLUS_6                          17                            51
  CLUS_7                          17                            36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        7     66     22      9
  DEL PEAK 11(4Q34.3) WILD-TYPE    101    116     71     41
D61V6, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           7                           101
  CLUS_2                          66                           116
  CLUS_3                          22                            71
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED      102      8     13      7
  DEL PEAK 11(4Q34.3) WILD-TYPE     86    115     80    126
D61V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         102                            86
  CLUS_2                           8                           115
  CLUS_3                          13                            80
  CLUS_4                           7                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED       81      1     16      3     23      6
  DEL PEAK 11(4Q34.3) WILD-TYPE     42     52     31     62     85     60
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q34.3) MUTATED        0
  DEL PEAK 11(4Q34.3) WILD-TYPE     75
D61V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          81                            42
  CLUS_2                           1                            52
  CLUS_3                          16                            31
  CLUS_4                           3                            62
  CLUS_5                          23                            85
  CLUS_6                           6                            60
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED       90     10     10      7     10
  DEL PEAK 11(4Q34.3) WILD-TYPE     74     70     96    126     37
D61V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          90                            74
  CLUS_2                          10                            70
  CLUS_3                          10                            96
  CLUS_4                           7                           126
  CLUS_5                          10                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       33     89      5
  DEL PEAK 11(4Q34.3) WILD-TYPE    185     83    135
D61V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          33                           185
  CLUS_2                          89                            83
  CLUS_3                           5                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED       55      8     29     20
  DEL PEAK 11(4Q34.3) WILD-TYPE     61     90     63     72
D61V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          55                            61
  CLUS_2                           8                            90
  CLUS_3                          29                            63
  CLUS_4                          20                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       61     10     41
  DEL PEAK 11(4Q34.3) WILD-TYPE    102    122     62
D61V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          61                           102
  CLUS_2                          10                           122
  CLUS_3                          41                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 12(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED        1      6      0      0
  DEL PEAK 12(5Q12.1) WILD-TYPE     14     11     14      7
D62V1, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED        3      4      0      0      0
  DEL PEAK 12(5Q12.1) WILD-TYPE     11      5      7      7     16
D62V2, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED      107      0      0      4
  DEL PEAK 12(5Q12.1) WILD-TYPE    101    178     99     50
D62V3, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                         107                           101
  CLUS_2                           0                           178
  CLUS_3                           0                            99
  CLUS_4                           4                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       65     21     11
  DEL PEAK 12(5Q12.1) WILD-TYPE     89     57    182
D62V4, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          65                            89
  CLUS_2                          21                            57
  CLUS_3                          11                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED        0      2      5     23     32     11
  DEL PEAK 12(5Q12.1) WILD-TYPE     39     79     47     33     52     57
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q12.1) MUTATED       13
  DEL PEAK 12(5Q12.1) WILD-TYPE     40
D62V5, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           2                            79
  CLUS_3                           5                            47
  CLUS_4                          23                            33
  CLUS_5                          32                            52
  CLUS_6                          11                            57
  CLUS_7                          13                            40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED        0     58     19      9
  DEL PEAK 12(5Q12.1) WILD-TYPE    108    124     74     41
D62V6, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           0                           108
  CLUS_2                          58                           124
  CLUS_3                          19                            74
  CLUS_4                           9                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       87      6      9      8
  DEL PEAK 12(5Q12.1) WILD-TYPE    101    117     84    125
D62V7, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          87                           101
  CLUS_2                           6                           117
  CLUS_3                           9                            84
  CLUS_4                           8                           125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       69      0     11      2     18     10
  DEL PEAK 12(5Q12.1) WILD-TYPE     54     53     36     63     90     56
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q12.1) MUTATED        0
  DEL PEAK 12(5Q12.1) WILD-TYPE     75
D62V8, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          69                            54
  CLUS_2                           0                            53
  CLUS_3                          11                            36
  CLUS_4                           2                            63
  CLUS_5                          18                            90
  CLUS_6                          10                            56
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q12.1) MUTATED       77      5      7      9     12
  DEL PEAK 12(5Q12.1) WILD-TYPE     87     75     99    124     35
D62V9, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          77                            87
  CLUS_2                           5                            75
  CLUS_3                           7                            99
  CLUS_4                           9                           124
  CLUS_5                          12                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       26     76      8
  DEL PEAK 12(5Q12.1) WILD-TYPE    192     96    132
D62V10, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          26                           192
  CLUS_2                          76                            96
  CLUS_3                           8                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       52      9     18     16
  DEL PEAK 12(5Q12.1) WILD-TYPE     64     89     74     76
D62V11, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          52                            64
  CLUS_2                           9                            89
  CLUS_3                          18                            74
  CLUS_4                          16                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       56     14     25
  DEL PEAK 12(5Q12.1) WILD-TYPE    107    118     78
D62V12, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          56                           107
  CLUS_2                          14                           118
  CLUS_3                          25                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     14     14     14      7
D63V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          14
  CLUS_2                         3                          14
  CLUS_3                         0                          14
  CLUS_4                         0                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13      6      7      7     16
D63V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       41      3      0      2
  DEL PEAK 13(6Q26) WILD-TYPE    167    175     99     52
D63V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        41                         167
  CLUS_2                         3                         175
  CLUS_3                         0                          99
  CLUS_4                         2                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       26     13      1
  DEL PEAK 13(6Q26) WILD-TYPE    128     65    192
D63V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        26                         128
  CLUS_2                        13                          65
  CLUS_3                         1                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        2      0      1      7     14      5      7
  DEL PEAK 13(6Q26) WILD-TYPE     37     81     51     49     70     63     46
D63V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          37
  CLUS_2                         0                          81
  CLUS_3                         1                          51
  CLUS_4                         7                          49
  CLUS_5                        14                          70
  CLUS_6                         5                          63
  CLUS_7                         7                          46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1     23      7      5
  DEL PEAK 13(6Q26) WILD-TYPE    107    159     86     45
D63V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                         107
  CLUS_2                        23                         159
  CLUS_3                         7                          86
  CLUS_4                         5                          45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       39      2      3      2
  DEL PEAK 13(6Q26) WILD-TYPE    149    121     90    131
D63V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        39                         149
  CLUS_2                         2                         121
  CLUS_3                         3                          90
  CLUS_4                         2                         131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED       36      1      3      0      5      0      1
  DEL PEAK 13(6Q26) WILD-TYPE     87     52     44     65    103     66     74
D63V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        36                          87
  CLUS_2                         1                          52
  CLUS_3                         3                          44
  CLUS_4                         0                          65
  CLUS_5                         5                         103
  CLUS_6                         0                          66
  CLUS_7                         1                          74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED       34      4      1      2      4
  DEL PEAK 13(6Q26) WILD-TYPE    130     76    105    131     43
D63V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        34                         130
  CLUS_2                         4                          76
  CLUS_3                         1                         105
  CLUS_4                         2                         131
  CLUS_5                         4                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       10     34      1
  DEL PEAK 13(6Q26) WILD-TYPE    208    138    139
D63V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        10                         208
  CLUS_2                        34                         138
  CLUS_3                         1                         139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       21      2     11      5
  DEL PEAK 13(6Q26) WILD-TYPE     95     96     81     87
D63V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        21                          95
  CLUS_2                         2                          96
  CLUS_3                        11                          81
  CLUS_4                         5                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       19      3     17
  DEL PEAK 13(6Q26) WILD-TYPE    144    129     86
D63V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        19                         144
  CLUS_2                         3                         129
  CLUS_3                        17                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      7      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     15     10     14      7
D64V1, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           7                            10
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        3      4      0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     11      5      7      7     16
D64V2, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED       66      3      1      2
  DEL PEAK 14(7P22.3) WILD-TYPE    142    175     98     52
D64V3, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          66                           142
  CLUS_2                           3                           175
  CLUS_3                           1                            98
  CLUS_4                           2                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       39     19      5
  DEL PEAK 14(7P22.3) WILD-TYPE    115     59    188
D64V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          39                           115
  CLUS_2                          19                            59
  CLUS_3                           5                           188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        1      2      1     14     22      5
  DEL PEAK 14(7P22.3) WILD-TYPE     38     79     51     42     62     63
                               vv
clus                            CLUS_7
  DEL PEAK 14(7P22.3) MUTATED       12
  DEL PEAK 14(7P22.3) WILD-TYPE     41
D64V5, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           2                            79
  CLUS_3                           1                            51
  CLUS_4                          14                            42
  CLUS_5                          22                            62
  CLUS_6                           5                            63
  CLUS_7                          12                            41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        2     36      9     10
  DEL PEAK 14(7P22.3) WILD-TYPE    106    146     84     40
D64V6, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           2                           106
  CLUS_2                          36                           146
  CLUS_3                           9                            84
  CLUS_4                          10                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED       61      3      5      3
  DEL PEAK 14(7P22.3) WILD-TYPE    127    120     88    130
D64V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          61                           127
  CLUS_2                           3                           120
  CLUS_3                           5                            88
  CLUS_4                           3                           130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED       51      0      9      0      8      4
  DEL PEAK 14(7P22.3) WILD-TYPE     72     53     38     65    100     62
                               vv
clus                            CLUS_7
  DEL PEAK 14(7P22.3) MUTATED        0
  DEL PEAK 14(7P22.3) WILD-TYPE     75
D64V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          51                            72
  CLUS_2                           0                            53
  CLUS_3                           9                            38
  CLUS_4                           0                            65
  CLUS_5                           8                           100
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED       52      3      4      5      7
  DEL PEAK 14(7P22.3) WILD-TYPE    112     77    102    128     40
D64V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          52                           112
  CLUS_2                           3                            77
  CLUS_3                           4                           102
  CLUS_4                           5                           128
  CLUS_5                           7                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       14     55      2
  DEL PEAK 14(7P22.3) WILD-TYPE    204    117    138
D64V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          14                           204
  CLUS_2                          55                           117
  CLUS_3                           2                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED       26      4     15     14
  DEL PEAK 14(7P22.3) WILD-TYPE     90     94     77     78
D64V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          26                            90
  CLUS_2                           4                            94
  CLUS_3                          15                            77
  CLUS_4                          14                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       34      5     20
  DEL PEAK 14(7P22.3) WILD-TYPE    129    127     83
D64V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          34                           129
  CLUS_2                           5                           127
  CLUS_3                          20                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 15(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        0      2      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     15     15     14      7
D65V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED        1      1      0      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     13      8      7      7     16
D65V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED       41      0      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE    167    178     99     54
D65V3, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           41                            167
  CLUS_2                            0                            178
  CLUS_3                            0                             99
  CLUS_4                            0                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       23     11      4
  DEL PEAK 15(7Q11.22) WILD-TYPE    131     67    189
D65V4, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           23                            131
  CLUS_2                           11                             67
  CLUS_3                            4                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED        0      2      0      7     14      6
  DEL PEAK 15(7Q11.22) WILD-TYPE     39     79     52     49     70     62
                                vv
clus                             CLUS_7
  DEL PEAK 15(7Q11.22) MUTATED        4
  DEL PEAK 15(7Q11.22) WILD-TYPE     49
D65V5, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            2                             79
  CLUS_3                            0                             52
  CLUS_4                            7                             49
  CLUS_5                           14                             70
  CLUS_6                            6                             62
  CLUS_7                            4                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        1     22      7      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    107    160     86     47
D65V6, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           22                            160
  CLUS_3                            7                             86
  CLUS_4                            3                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED       35      1      3      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    153    122     90    131
D65V7, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           35                            153
  CLUS_2                            1                            122
  CLUS_3                            3                             90
  CLUS_4                            2                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED       27      0      4      0      7      3
  DEL PEAK 15(7Q11.22) WILD-TYPE     96     53     43     65    101     63
                                vv
clus                             CLUS_7
  DEL PEAK 15(7Q11.22) MUTATED        0
  DEL PEAK 15(7Q11.22) WILD-TYPE     75
D65V8, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           27                             96
  CLUS_2                            0                             53
  CLUS_3                            4                             43
  CLUS_4                            0                             65
  CLUS_5                            7                            101
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED       33      1      1      3      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    131     79    105    130     45
D65V9, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           33                            131
  CLUS_2                            1                             79
  CLUS_3                            1                            105
  CLUS_4                            3                            130
  CLUS_5                            2                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        9     29      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    209    143    138
D65V10, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            9                            209
  CLUS_2                           29                            143
  CLUS_3                            2                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED       18      3      6      9
  DEL PEAK 15(7Q11.22) WILD-TYPE     98     95     86     83
D65V11, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           18                             98
  CLUS_2                            3                             95
  CLUS_3                            6                             86
  CLUS_4                            9                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       22      4     10
  DEL PEAK 15(7Q11.22) WILD-TYPE    141    128     93
D65V12, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           22                            141
  CLUS_2                            4                            128
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 16(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        0      3      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     15     14     14      7
D66V1, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           3                            14
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED        1      2      0      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     13      7      7      7     16
D66V2, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED       55      0      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE    153    178     99     54
D66V3, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          55                           153
  CLUS_2                           0                           178
  CLUS_3                           0                            99
  CLUS_4                           0                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       32     16      2
  DEL PEAK 16(7Q31.1) WILD-TYPE    122     62    191
D66V4, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          32                           122
  CLUS_2                          16                            62
  CLUS_3                           2                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED        1      1      1      8     23      6
  DEL PEAK 16(7Q31.1) WILD-TYPE     38     80     51     48     61     62
                               vv
clus                            CLUS_7
  DEL PEAK 16(7Q31.1) MUTATED        8
  DEL PEAK 16(7Q31.1) WILD-TYPE     45
D66V5, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           1                            51
  CLUS_4                           8                            48
  CLUS_5                          23                            61
  CLUS_6                           6                            62
  CLUS_7                           8                            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        1     31     10      6
  DEL PEAK 16(7Q31.1) WILD-TYPE    107    151     83     44
D66V6, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          31                           151
  CLUS_3                          10                            83
  CLUS_4                           6                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED       52      0      2      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    136    123     91    132
D66V7, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          52                           136
  CLUS_2                           0                           123
  CLUS_3                           2                            91
  CLUS_4                           1                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED       44      0      4      0      5      2
  DEL PEAK 16(7Q31.1) WILD-TYPE     79     53     43     65    103     64
                               vv
clus                            CLUS_7
  DEL PEAK 16(7Q31.1) MUTATED        0
  DEL PEAK 16(7Q31.1) WILD-TYPE     75
D66V8, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          44                            79
  CLUS_2                           0                            53
  CLUS_3                           4                            43
  CLUS_4                           0                            65
  CLUS_5                           5                           103
  CLUS_6                           2                            64
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED       45      1      2      3      3
  DEL PEAK 16(7Q31.1) WILD-TYPE    119     79    104    130     44
D66V9, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          45                           119
  CLUS_2                           1                            79
  CLUS_3                           2                           104
  CLUS_4                           3                           130
  CLUS_5                           3                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        8     44      2
  DEL PEAK 16(7Q31.1) WILD-TYPE    210    128    138
D66V10, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           8                           210
  CLUS_2                          44                           128
  CLUS_3                           2                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED       26      3      8     10
  DEL PEAK 16(7Q31.1) WILD-TYPE     90     95     84     82
D66V11, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          26                            90
  CLUS_2                           3                            95
  CLUS_3                           8                            84
  CLUS_4                          10                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       27      4     16
  DEL PEAK 16(7Q31.1) WILD-TYPE    136    128     87
D66V12, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          27                           136
  CLUS_2                           4                           128
  CLUS_3                          16                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 17(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        1      4      1      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     14     13     13      7
D67V1, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           4                            13
  CLUS_3                           1                            13
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED        2      3      1      0      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     12      6      6      7     16
D67V2, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       62      0      1      0
  DEL PEAK 17(7Q36.1) WILD-TYPE    146    178     98     54
D67V3, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          62                           146
  CLUS_2                           0                           178
  CLUS_3                           1                            98
  CLUS_4                           0                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       34     18      2
  DEL PEAK 17(7Q36.1) WILD-TYPE    120     60    191
D67V4, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          34                           120
  CLUS_2                          18                            60
  CLUS_3                           2                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED        1      1      1     10     23      8
  DEL PEAK 17(7Q36.1) WILD-TYPE     38     80     51     46     61     60
                               vv
clus                            CLUS_7
  DEL PEAK 17(7Q36.1) MUTATED        8
  DEL PEAK 17(7Q36.1) WILD-TYPE     45
D67V5, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           1                            80
  CLUS_3                           1                            51
  CLUS_4                          10                            46
  CLUS_5                          23                            61
  CLUS_6                           8                            60
  CLUS_7                           8                            45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        1     35     11      5
  DEL PEAK 17(7Q36.1) WILD-TYPE    107    147     82     45
D67V6, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          35                           147
  CLUS_3                          11                            82
  CLUS_4                           5                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       58      0      4      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    130    123     89    132
D67V7, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          58                           130
  CLUS_2                           0                           123
  CLUS_3                           4                            89
  CLUS_4                           1                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED       50      0      7      0      4      2
  DEL PEAK 17(7Q36.1) WILD-TYPE     73     53     40     65    104     64
                               vv
clus                            CLUS_7
  DEL PEAK 17(7Q36.1) MUTATED        0
  DEL PEAK 17(7Q36.1) WILD-TYPE     75
D67V8, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          50                            73
  CLUS_2                           0                            53
  CLUS_3                           7                            40
  CLUS_4                           0                            65
  CLUS_5                           4                           104
  CLUS_6                           2                            64
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED       51      1      3      3      4
  DEL PEAK 17(7Q36.1) WILD-TYPE    113     79    103    130     43
D67V9, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          51                           113
  CLUS_2                           1                            79
  CLUS_3                           3                           103
  CLUS_4                           3                           130
  CLUS_5                           4                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        9     51      2
  DEL PEAK 17(7Q36.1) WILD-TYPE    209    121    138
D67V10, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           9                           209
  CLUS_2                          51                           121
  CLUS_3                           2                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       26      3      9     12
  DEL PEAK 17(7Q36.1) WILD-TYPE     90     95     83     80
D67V11, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          26                            90
  CLUS_2                           3                            95
  CLUS_3                           9                            83
  CLUS_4                          12                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       31      3     16
  DEL PEAK 17(7Q36.1) WILD-TYPE    132    129     87
D67V12, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          31                           132
  CLUS_2                           3                           129
  CLUS_3                          16                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     15     11     14      7
D68V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           6                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14      3      7      7     16
D68V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED      111      3      2      3
  DEL PEAK 18(8P23.2) WILD-TYPE     97    175     97     51
D68V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         111                            97
  CLUS_2                           3                           175
  CLUS_3                           2                            97
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       71     29      5
  DEL PEAK 18(8P23.2) WILD-TYPE     83     49    188
D68V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          71                            83
  CLUS_2                          29                            49
  CLUS_3                           5                           188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        3      2      6     16     36     17
  DEL PEAK 18(8P23.2) WILD-TYPE     36     79     46     40     48     51
                               vv
clus                            CLUS_7
  DEL PEAK 18(8P23.2) MUTATED       18
  DEL PEAK 18(8P23.2) WILD-TYPE     35
D68V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                            36
  CLUS_2                           2                            79
  CLUS_3                           6                            46
  CLUS_4                          16                            40
  CLUS_5                          36                            48
  CLUS_6                          17                            51
  CLUS_7                          18                            35
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        3     62     21     12
  DEL PEAK 18(8P23.2) WILD-TYPE    105    120     72     38
D68V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                           105
  CLUS_2                          62                           120
  CLUS_3                          21                            72
  CLUS_4                          12                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       98      5     11      4
  DEL PEAK 18(8P23.2) WILD-TYPE     90    118     82    129
D68V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          98                            90
  CLUS_2                           5                           118
  CLUS_3                          11                            82
  CLUS_4                           4                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       77      0     20      1     14      5
  DEL PEAK 18(8P23.2) WILD-TYPE     46     53     27     64     94     61
                               vv
clus                            CLUS_7
  DEL PEAK 18(8P23.2) MUTATED        1
  DEL PEAK 18(8P23.2) WILD-TYPE     74
D68V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          77                            46
  CLUS_2                           0                            53
  CLUS_3                          20                            27
  CLUS_4                           1                            64
  CLUS_5                          14                            94
  CLUS_6                           5                            61
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED       85      4     10      7     10
  DEL PEAK 18(8P23.2) WILD-TYPE     79     76     96    126     37
D68V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          85                            79
  CLUS_2                           4                            76
  CLUS_3                          10                            96
  CLUS_4                           7                           126
  CLUS_5                          10                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       20     91      5
  DEL PEAK 18(8P23.2) WILD-TYPE    198     81    135
D68V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          20                           198
  CLUS_2                          91                            81
  CLUS_3                           5                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       49      5     20     25
  DEL PEAK 18(8P23.2) WILD-TYPE     67     93     72     67
D68V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          49                            67
  CLUS_2                           5                            93
  CLUS_3                          20                            72
  CLUS_4                          25                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       58      6     35
  DEL PEAK 18(8P23.2) WILD-TYPE    105    126     68
D68V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          58                           105
  CLUS_2                           6                           126
  CLUS_3                          35                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 19(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     15     11     14      7
D69V1, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           6                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14      3      7      7     16
D69V2, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED      112      2      0      3
  DEL PEAK 19(8P21.2) WILD-TYPE     96    176     99     51
D69V3, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         112                            96
  CLUS_2                           2                           176
  CLUS_3                           0                            99
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       73     28      2
  DEL PEAK 19(8P21.2) WILD-TYPE     81     50    191
D69V4, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          73                            81
  CLUS_2                          28                            50
  CLUS_3                           2                           191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED        2      1      6     18     33     17
  DEL PEAK 19(8P21.2) WILD-TYPE     37     80     46     38     51     51
                               vv
clus                            CLUS_7
  DEL PEAK 19(8P21.2) MUTATED       17
  DEL PEAK 19(8P21.2) WILD-TYPE     36
D69V5, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           1                            80
  CLUS_3                           6                            46
  CLUS_4                          18                            38
  CLUS_5                          33                            51
  CLUS_6                          17                            51
  CLUS_7                          17                            36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        1     62     20     11
  DEL PEAK 19(8P21.2) WILD-TYPE    107    120     73     39
D69V6, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                          62                           120
  CLUS_3                          20                            73
  CLUS_4                          11                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED      101      4     10      1
  DEL PEAK 19(8P21.2) WILD-TYPE     87    119     83    132
D69V7, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         101                            87
  CLUS_2                           4                           119
  CLUS_3                          10                            83
  CLUS_4                           1                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED       80      0     20      1     12      3
  DEL PEAK 19(8P21.2) WILD-TYPE     43     53     27     64     96     63
                               vv
clus                            CLUS_7
  DEL PEAK 19(8P21.2) MUTATED        0
  DEL PEAK 19(8P21.2) WILD-TYPE     75
D69V8, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          80                            43
  CLUS_2                           0                            53
  CLUS_3                          20                            27
  CLUS_4                           1                            64
  CLUS_5                          12                            96
  CLUS_6                           3                            63
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED       87      4     11      3      9
  DEL PEAK 19(8P21.2) WILD-TYPE     77     76     95    130     38
D69V9, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          87                            77
  CLUS_2                           4                            76
  CLUS_3                          11                            95
  CLUS_4                           3                           130
  CLUS_5                           9                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       17     95      2
  DEL PEAK 19(8P21.2) WILD-TYPE    201     77    138
D69V10, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          17                           201
  CLUS_2                          95                            77
  CLUS_3                           2                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED       49      2     21     26
  DEL PEAK 19(8P21.2) WILD-TYPE     67     96     71     66
D69V11, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          49                            67
  CLUS_2                           2                            96
  CLUS_3                          21                            71
  CLUS_4                          26                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       59      4     35
  DEL PEAK 19(8P21.2) WILD-TYPE    104    128     68
D69V12, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          59                           104
  CLUS_2                           4                           128
  CLUS_3                          35                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 20(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        1      4      0      0
  DEL PEAK 20(9P23) WILD-TYPE     14     13     14      7
D70V1, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          14
  CLUS_2                         4                          13
  CLUS_3                         0                          14
  CLUS_4                         0                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED        2      3      0      0      0
  DEL PEAK 20(9P23) WILD-TYPE     12      6      7      7     16
D70V2, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED       75      1      0      4
  DEL PEAK 20(9P23) WILD-TYPE    133    177     99     50
D70V3, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        75                         133
  CLUS_2                         1                         177
  CLUS_3                         0                          99
  CLUS_4                         4                          50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       43     19      9
  DEL PEAK 20(9P23) WILD-TYPE    111     59    184
D70V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        43                         111
  CLUS_2                        19                          59
  CLUS_3                         9                         184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(9P23) MUTATED        3      2      4     10     20     11     12
  DEL PEAK 20(9P23) WILD-TYPE     36     79     48     46     64     57     41
D70V5, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         3                          36
  CLUS_2                         2                          79
  CLUS_3                         4                          48
  CLUS_4                        10                          46
  CLUS_5                        20                          64
  CLUS_6                        11                          57
  CLUS_7                        12                          41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        4     36     15      7
  DEL PEAK 20(9P23) WILD-TYPE    104    146     78     43
D70V6, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         4                         104
  CLUS_2                        36                         146
  CLUS_3                        15                          78
  CLUS_4                         7                          43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED       56      4      9     11
  DEL PEAK 20(9P23) WILD-TYPE    132    119     84    122
D70V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        56                         132
  CLUS_2                         4                         119
  CLUS_3                         9                          84
  CLUS_4                        11                         122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(9P23) MUTATED       42      0     14      2     12      9      1
  DEL PEAK 20(9P23) WILD-TYPE     81     53     33     63     96     57     74
D70V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        42                          81
  CLUS_2                         0                          53
  CLUS_3                        14                          33
  CLUS_4                         2                          63
  CLUS_5                        12                          96
  CLUS_6                         9                          57
  CLUS_7                         1                          74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED       51      3      5     12      8
  DEL PEAK 20(9P23) WILD-TYPE    113     77    101    121     39
D70V9, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        51                         113
  CLUS_2                         3                          77
  CLUS_3                         5                         101
  CLUS_4                        12                         121
  CLUS_5                         8                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       13     55     11
  DEL PEAK 20(9P23) WILD-TYPE    205    117    129
D70V10, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        13                         205
  CLUS_2                        55                         117
  CLUS_3                        11                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED       32     10     16     11
  DEL PEAK 20(9P23) WILD-TYPE     84     88     76     81
D70V11, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        32                          84
  CLUS_2                        10                          88
  CLUS_3                        16                          76
  CLUS_4                        11                          81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       37     13     19
  DEL PEAK 20(9P23) WILD-TYPE    126    119     84
D70V12, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        37                         126
  CLUS_2                        13                         119
  CLUS_3                        19                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 21(9Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        0      9      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     15      8     14      7
D71V1, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           9                             8
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED        2      7      0      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     12      2      7      7     16
D71V2, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED      123      1      1      4
  DEL PEAK 21(9Q21.2) WILD-TYPE     85    177     98     50
D71V3, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                         123                            85
  CLUS_2                           1                           177
  CLUS_3                           1                            98
  CLUS_4                           4                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       70     25     18
  DEL PEAK 21(9Q21.2) WILD-TYPE     84     53    175
D71V4, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          70                            84
  CLUS_2                          25                            53
  CLUS_3                          18                           175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED        5      3      7     20     31     16
  DEL PEAK 21(9Q21.2) WILD-TYPE     34     78     45     36     53     52
                               vv
clus                            CLUS_7
  DEL PEAK 21(9Q21.2) MUTATED       17
  DEL PEAK 21(9Q21.2) WILD-TYPE     36
D71V5, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           3                            78
  CLUS_3                           7                            45
  CLUS_4                          20                            36
  CLUS_5                          31                            53
  CLUS_6                          16                            52
  CLUS_7                          17                            36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        7     64     20      8
  DEL PEAK 21(9Q21.2) WILD-TYPE    101    118     73     42
D71V6, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           7                           101
  CLUS_2                          64                           118
  CLUS_3                          20                            73
  CLUS_4                           8                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       96      9      9     15
  DEL PEAK 21(9Q21.2) WILD-TYPE     92    114     84    118
D71V7, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          96                            92
  CLUS_2                           9                           114
  CLUS_3                           9                            84
  CLUS_4                          15                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED       77      0     16      3     19     13
  DEL PEAK 21(9Q21.2) WILD-TYPE     46     53     31     62     89     53
                               vv
clus                            CLUS_7
  DEL PEAK 21(9Q21.2) MUTATED        1
  DEL PEAK 21(9Q21.2) WILD-TYPE     74
D71V8, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          77                            46
  CLUS_2                           0                            53
  CLUS_3                          16                            31
  CLUS_4                           3                            62
  CLUS_5                          19                            89
  CLUS_6                          13                            53
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED       90      5      5     15     11
  DEL PEAK 21(9Q21.2) WILD-TYPE     74     75    101    118     36
D71V9, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          90                            74
  CLUS_2                           5                            75
  CLUS_3                           5                           101
  CLUS_4                          15                           118
  CLUS_5                          11                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       30     82     14
  DEL PEAK 21(9Q21.2) WILD-TYPE    188     90    126
D71V10, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          30                           188
  CLUS_2                          82                            90
  CLUS_3                          14                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       52     15     24     19
  DEL PEAK 21(9Q21.2) WILD-TYPE     64     83     68     73
D71V11, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          52                            64
  CLUS_2                          15                            83
  CLUS_3                          24                            68
  CLUS_4                          19                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       60     20     30
  DEL PEAK 21(9Q21.2) WILD-TYPE    103    112     73
D71V12, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          60                           103
  CLUS_2                          20                           112
  CLUS_3                          30                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 22(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        0      9      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     15      8     14      7
D72V1, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           9                             8
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED        2      7      0      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     12      2      7      7     16
D72V2, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED      127      1      1      3
  DEL PEAK 22(9Q34.2) WILD-TYPE     81    177     98     51
D72V3, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                         127                            81
  CLUS_2                           1                           177
  CLUS_3                           1                            98
  CLUS_4                           3                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       68     30     16
  DEL PEAK 22(9Q34.2) WILD-TYPE     86     48    177
D72V4, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          68                            86
  CLUS_2                          30                            48
  CLUS_3                          16                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED        5      2      9     21     35     17
  DEL PEAK 22(9Q34.2) WILD-TYPE     34     79     43     35     49     51
                               vv
clus                            CLUS_7
  DEL PEAK 22(9Q34.2) MUTATED       14
  DEL PEAK 22(9Q34.2) WILD-TYPE     39
D72V5, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           2                            79
  CLUS_3                           9                            43
  CLUS_4                          21                            35
  CLUS_5                          35                            49
  CLUS_6                          17                            51
  CLUS_7                          14                            39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        7     64     25      7
  DEL PEAK 22(9Q34.2) WILD-TYPE    101    118     68     43
D72V6, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           7                           101
  CLUS_2                          64                           118
  CLUS_3                          25                            68
  CLUS_4                           7                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       97      9     11     14
  DEL PEAK 22(9Q34.2) WILD-TYPE     91    114     82    119
D72V7, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          97                            91
  CLUS_2                           9                           114
  CLUS_3                          11                            82
  CLUS_4                          14                           119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED       75      0     16      3     22     14
  DEL PEAK 22(9Q34.2) WILD-TYPE     48     53     31     62     86     52
                               vv
clus                            CLUS_7
  DEL PEAK 22(9Q34.2) MUTATED        1
  DEL PEAK 22(9Q34.2) WILD-TYPE     74
D72V8, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          75                            48
  CLUS_2                           0                            53
  CLUS_3                          16                            31
  CLUS_4                           3                            62
  CLUS_5                          22                            86
  CLUS_6                          14                            52
  CLUS_7                           1                            74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED       90      6      6     16     11
  DEL PEAK 22(9Q34.2) WILD-TYPE     74     74    100    117     36
D72V9, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          90                            74
  CLUS_2                           6                            74
  CLUS_3                           6                           100
  CLUS_4                          16                           117
  CLUS_5                          11                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       34     81     14
  DEL PEAK 22(9Q34.2) WILD-TYPE    184     91    126
D72V10, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          34                           184
  CLUS_2                          81                            91
  CLUS_3                          14                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       50     16     22     23
  DEL PEAK 22(9Q34.2) WILD-TYPE     66     82     70     69
D72V11, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          50                            66
  CLUS_2                          16                            82
  CLUS_3                          22                            70
  CLUS_4                          23                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       63     20     28
  DEL PEAK 22(9Q34.2) WILD-TYPE    100    112     75
D72V12, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          63                           100
  CLUS_2                          20                           112
  CLUS_3                          28                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 23(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED        0      2      0      0
  DEL PEAK 23(10Q21.1) WILD-TYPE     15     15     14      7
D73V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 23(10Q21.1) MUTATED"
clus
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06F 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 23(10Q21.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q21.1) MUTATED        2      0      0      0      0
  DEL PEAK 23(10Q21.1) WILD-TYPE     12      9      7      7     16
D73V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 23(10Q21.1) MUTATED"
clus
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06F 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 23(10Q21.1) WILD-TYPE" "DEL PEAK 23(10Q21.1) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 23(10Q21.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       49      0      0      1
  DEL PEAK 23(10Q21.1) WILD-TYPE    159    178     99     53
D73V3, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           49                            159
  CLUS_2                            0                            178
  CLUS_3                            0                             99
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       33     13      2
  DEL PEAK 23(10Q21.1) WILD-TYPE    121     65    191
D73V4, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           33                            121
  CLUS_2                           13                             65
  CLUS_3                            2                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED        0      1      2      9     17      8
  DEL PEAK 23(10Q21.1) WILD-TYPE     39     80     50     47     67     60
                                vv
clus                             CLUS_7
  DEL PEAK 23(10Q21.1) MUTATED        5
  DEL PEAK 23(10Q21.1) WILD-TYPE     48
D73V5, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            1                             80
  CLUS_3                            2                             50
  CLUS_4                            9                             47
  CLUS_5                           17                             67
  CLUS_6                            8                             60
  CLUS_7                            5                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED        0     30     10      2
  DEL PEAK 23(10Q21.1) WILD-TYPE    108    152     83     48
D73V6, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            0                            108
  CLUS_2                           30                            152
  CLUS_3                           10                             83
  CLUS_4                            2                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       42      1      4      3
  DEL PEAK 23(10Q21.1) WILD-TYPE    146    122     89    130
D73V7, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           42                            146
  CLUS_2                            1                            122
  CLUS_3                            4                             89
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED       36      0      3      1      7      3
  DEL PEAK 23(10Q21.1) WILD-TYPE     87     53     44     64    101     63
                                vv
clus                             CLUS_7
  DEL PEAK 23(10Q21.1) MUTATED        0
  DEL PEAK 23(10Q21.1) WILD-TYPE     75
D73V8, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           36                             87
  CLUS_2                            0                             53
  CLUS_3                            3                             44
  CLUS_4                            1                             64
  CLUS_5                            7                            101
  CLUS_6                            3                             63
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q21.1) MUTATED       41      2      1      2      4
  DEL PEAK 23(10Q21.1) WILD-TYPE    123     78    105    131     43
D73V9, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           41                            123
  CLUS_2                            2                             78
  CLUS_3                            1                            105
  CLUS_4                            2                            131
  CLUS_5                            4                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED        9     38      3
  DEL PEAK 23(10Q21.1) WILD-TYPE    209    134    137
D73V10, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            9                            209
  CLUS_2                           38                            134
  CLUS_3                            3                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       29      3      7      8
  DEL PEAK 23(10Q21.1) WILD-TYPE     87     95     85     84
D73V11, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           29                             87
  CLUS_2                            3                             95
  CLUS_3                            7                             85
  CLUS_4                            8                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       31      3     13
  DEL PEAK 23(10Q21.1) WILD-TYPE    132    129     90
D73V12, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           31                            132
  CLUS_2                            3                            129
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED        0      3      0      0
  DEL PEAK 24(10Q23.31) WILD-TYPE     15     14     14      7
D74V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             0                              15
  CLUS_2                             3                              14
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED        1      2      0      0      0
  DEL PEAK 24(10Q23.31) WILD-TYPE     13      7      7      7     16
D74V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             2                               7
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       72      0      2      4
  DEL PEAK 24(10Q23.31) WILD-TYPE    136    178     97     50
D74V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            72                             136
  CLUS_2                             0                             178
  CLUS_3                             2                              97
  CLUS_4                             4                              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       40     22      7
  DEL PEAK 24(10Q23.31) WILD-TYPE    114     56    186
D74V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            40                             114
  CLUS_2                            22                              56
  CLUS_3                             7                             186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED        3      1      6     11     22     11
  DEL PEAK 24(10Q23.31) WILD-TYPE     36     80     46     45     62     57
                                 vv
clus                              CLUS_7
  DEL PEAK 24(10Q23.31) MUTATED        8
  DEL PEAK 24(10Q23.31) WILD-TYPE     45
D74V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             1                              80
  CLUS_3                             6                              46
  CLUS_4                            11                              45
  CLUS_5                            22                              62
  CLUS_6                            11                              57
  CLUS_7                             8                              45
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED        3     40     14      5
  DEL PEAK 24(10Q23.31) WILD-TYPE    105    142     79     45
D74V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             3                             105
  CLUS_2                            40                             142
  CLUS_3                            14                              79
  CLUS_4                             5                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       59      2      9      7
  DEL PEAK 24(10Q23.31) WILD-TYPE    129    121     84    126
D74V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            59                             129
  CLUS_2                             2                             121
  CLUS_3                             9                              84
  CLUS_4                             7                             126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED       48      0      7      3     12      5
  DEL PEAK 24(10Q23.31) WILD-TYPE     75     53     40     62     96     61
                                 vv
clus                              CLUS_7
  DEL PEAK 24(10Q23.31) MUTATED        2
  DEL PEAK 24(10Q23.31) WILD-TYPE     73
D74V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            48                              75
  CLUS_2                             0                              53
  CLUS_3                             7                              40
  CLUS_4                             3                              62
  CLUS_5                            12                              96
  CLUS_6                             5                              61
  CLUS_7                             2                              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED       54      4      5      6      8
  DEL PEAK 24(10Q23.31) WILD-TYPE    110     76    101    127     39
D74V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            54                             110
  CLUS_2                             4                              76
  CLUS_3                             5                             101
  CLUS_4                             6                             127
  CLUS_5                             8                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       18     52      7
  DEL PEAK 24(10Q23.31) WILD-TYPE    200    120    133
D74V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            18                             200
  CLUS_2                            52                             120
  CLUS_3                             7                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       33      6     12     17
  DEL PEAK 24(10Q23.31) WILD-TYPE     83     92     80     75
D74V11, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            33                              83
  CLUS_2                             6                              92
  CLUS_3                            12                              80
  CLUS_4                            17                              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       40      8     20
  DEL PEAK 24(10Q23.31) WILD-TYPE    123    124     83
D74V12, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            40                             123
  CLUS_2                             8                             124
  CLUS_3                            20                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 25(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED        1      3      0      0
  DEL PEAK 25(11P15.5) WILD-TYPE     14     14     14      7
D75V1, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            3                             14
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11P15.5) MUTATED        2      2      0      0      0
  DEL PEAK 25(11P15.5) WILD-TYPE     12      7      7      7     16
D75V2, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       99      1      0      4
  DEL PEAK 25(11P15.5) WILD-TYPE    109    177     99     50
D75V3, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           99                            109
  CLUS_2                            1                            177
  CLUS_3                            0                             99
  CLUS_4                            4                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       59     28      8
  DEL PEAK 25(11P15.5) WILD-TYPE     95     50    185
D75V4, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           59                             95
  CLUS_2                           28                             50
  CLUS_3                            8                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11P15.5) MUTATED        3      2      6     16     32     10
  DEL PEAK 25(11P15.5) WILD-TYPE     36     79     46     40     52     58
                                vv
clus                             CLUS_7
  DEL PEAK 25(11P15.5) MUTATED       10
  DEL PEAK 25(11P15.5) WILD-TYPE     43
D75V5, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            2                             79
  CLUS_3                            6                             46
  CLUS_4                           16                             40
  CLUS_5                           32                             52
  CLUS_6                           10                             58
  CLUS_7                           10                             43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED        5     54     13      7
  DEL PEAK 25(11P15.5) WILD-TYPE    103    128     80     43
D75V6, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                            5                            103
  CLUS_2                           54                            128
  CLUS_3                           13                             80
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       78      5     10     10
  DEL PEAK 25(11P15.5) WILD-TYPE    110    118     83    123
D75V7, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           78                            110
  CLUS_2                            5                            118
  CLUS_3                           10                             83
  CLUS_4                           10                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11P15.5) MUTATED       58      1     18      0     15      9
  DEL PEAK 25(11P15.5) WILD-TYPE     65     52     29     65     93     57
                                vv
clus                             CLUS_7
  DEL PEAK 25(11P15.5) MUTATED        2
  DEL PEAK 25(11P15.5) WILD-TYPE     73
D75V8, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           58                             65
  CLUS_2                            1                             52
  CLUS_3                           18                             29
  CLUS_4                            0                             65
  CLUS_5                           15                             93
  CLUS_6                            9                             57
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11P15.5) MUTATED       74      4      4     13      8
  DEL PEAK 25(11P15.5) WILD-TYPE     90     76    102    120     39
D75V9, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           74                             90
  CLUS_2                            4                             76
  CLUS_3                            4                            102
  CLUS_4                           13                            120
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       20     72     11
  DEL PEAK 25(11P15.5) WILD-TYPE    198    100    129
D75V10, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           20                            198
  CLUS_2                           72                            100
  CLUS_3                           11                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11P15.5) MUTATED       50     10     15     20
  DEL PEAK 25(11P15.5) WILD-TYPE     66     88     77     72
D75V11, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           50                             66
  CLUS_2                           10                             88
  CLUS_3                           15                             77
  CLUS_4                           20                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11P15.5) MUTATED       60     14     21
  DEL PEAK 25(11P15.5) WILD-TYPE    103    118     82
D75V12, multiclass
        clus
vv       DEL PEAK 25(11P15.5) MUTATED DEL PEAK 25(11P15.5) WILD-TYPE
  CLUS_1                           60                            103
  CLUS_2                           14                            118
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 26(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q14.1) MUTATED        0      1      0      0
  DEL PEAK 26(11Q14.1) WILD-TYPE     15     16     14      7
D76V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 26(11Q14.1) MUTATED"
clus
  DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q14.1) MUTATED        1      0      0      0      0
  DEL PEAK 26(11Q14.1) WILD-TYPE     13      9      7      7     16
D76V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 26(11Q14.1) MUTATED"
clus
  DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 26(11Q14.1) WILD-TYPE" "DEL PEAK 26(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q14.1) MUTATED       65      0      0      4
  DEL PEAK 26(11Q14.1) WILD-TYPE    143    178     99     50
D76V3, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           65                            143
  CLUS_2                            0                            178
  CLUS_3                            0                             99
  CLUS_4                            4                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q14.1) MUTATED       42     17      6
  DEL PEAK 26(11Q14.1) WILD-TYPE    112     61    187
D76V4, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           42                            112
  CLUS_2                           17                             61
  CLUS_3                            6                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q14.1) MUTATED        3      2      4     12     23      8
  DEL PEAK 26(11Q14.1) WILD-TYPE     36     79     48     44     61     60
                                vv
clus                             CLUS_7
  DEL PEAK 26(11Q14.1) MUTATED        4
  DEL PEAK 26(11Q14.1) WILD-TYPE     49
D76V5, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            2                             79
  CLUS_3                            4                             48
  CLUS_4                           12                             44
  CLUS_5                           23                             61
  CLUS_6                            8                             60
  CLUS_7                            4                             49
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q14.1) MUTATED        3     44      7      2
  DEL PEAK 26(11Q14.1) WILD-TYPE    105    138     86     48
D76V6, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           44                            138
  CLUS_3                            7                             86
  CLUS_4                            2                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q14.1) MUTATED       53      3      6      6
  DEL PEAK 26(11Q14.1) WILD-TYPE    135    120     87    127
D76V7, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           53                            135
  CLUS_2                            3                            120
  CLUS_3                            6                             87
  CLUS_4                            6                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q14.1) MUTATED       42      1     12      1      8      4
  DEL PEAK 26(11Q14.1) WILD-TYPE     81     52     35     64    100     62
                                vv
clus                             CLUS_7
  DEL PEAK 26(11Q14.1) MUTATED        0
  DEL PEAK 26(11Q14.1) WILD-TYPE     75
D76V8, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           42                             81
  CLUS_2                            1                             52
  CLUS_3                           12                             35
  CLUS_4                            1                             64
  CLUS_5                            8                            100
  CLUS_6                            4                             62
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q14.1) MUTATED       53      3      2      8      3
  DEL PEAK 26(11Q14.1) WILD-TYPE    111     77    104    125     44
D76V9, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           53                            111
  CLUS_2                            3                             77
  CLUS_3                            2                            104
  CLUS_4                            8                            125
  CLUS_5                            3                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q14.1) MUTATED       10     52      7
  DEL PEAK 26(11Q14.1) WILD-TYPE    208    120    133
D76V10, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           10                            208
  CLUS_2                           52                            120
  CLUS_3                            7                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q14.1) MUTATED       34      7      9     14
  DEL PEAK 26(11Q14.1) WILD-TYPE     82     91     83     78
D76V11, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                            7                             91
  CLUS_3                            9                             83
  CLUS_4                           14                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q14.1) MUTATED       44      7     13
  DEL PEAK 26(11Q14.1) WILD-TYPE    119    125     90
D76V12, multiclass
        clus
vv       DEL PEAK 26(11Q14.1) MUTATED DEL PEAK 26(11Q14.1) WILD-TYPE
  CLUS_1                           44                            119
  CLUS_2                            7                            125
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 27(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q25) MUTATED        0      3      0      0
  DEL PEAK 27(11Q25) WILD-TYPE     15     14     14      7
D77V1, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          3                           14
  CLUS_3                          0                           14
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(11Q25) MUTATED        1      2      0      0      0
  DEL PEAK 27(11Q25) WILD-TYPE     13      7      7      7     16
D77V2, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            7
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q25) MUTATED       89      2      0      3
  DEL PEAK 27(11Q25) WILD-TYPE    119    176     99     51
D77V3, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         89                          119
  CLUS_2                          2                          176
  CLUS_3                          0                           99
  CLUS_4                          3                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q25) MUTATED       58     19      8
  DEL PEAK 27(11Q25) WILD-TYPE     96     59    185
D77V4, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         58                           96
  CLUS_2                         19                           59
  CLUS_3                          8                          185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 27(11Q25) MUTATED        4      3      9     15     31      9      7
  DEL PEAK 27(11Q25) WILD-TYPE     35     78     43     41     53     59     46
D77V5, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                          4                           35
  CLUS_2                          3                           78
  CLUS_3                          9                           43
  CLUS_4                         15                           41
  CLUS_5                         31                           53
  CLUS_6                          9                           59
  CLUS_7                          7                           46
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q25) MUTATED        5     55     15      3
  DEL PEAK 27(11Q25) WILD-TYPE    103    127     78     47
D77V6, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                          5                          103
  CLUS_2                         55                          127
  CLUS_3                         15                           78
  CLUS_4                          3                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q25) MUTATED       68      6     10      9
  DEL PEAK 27(11Q25) WILD-TYPE    120    117     83    124
D77V7, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         68                          120
  CLUS_2                          6                          117
  CLUS_3                         10                           83
  CLUS_4                          9                          124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 27(11Q25) MUTATED       53      1     14      2     16      6      1
  DEL PEAK 27(11Q25) WILD-TYPE     70     52     33     63     92     60     74
D77V8, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         53                           70
  CLUS_2                          1                           52
  CLUS_3                         14                           33
  CLUS_4                          2                           63
  CLUS_5                         16                           92
  CLUS_6                          6                           60
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(11Q25) MUTATED       62      7      5     11      7
  DEL PEAK 27(11Q25) WILD-TYPE    102     73    101    122     40
D77V9, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         62                          102
  CLUS_2                          7                           73
  CLUS_3                          5                          101
  CLUS_4                         11                          122
  CLUS_5                          7                           40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q25) MUTATED       20     64      8
  DEL PEAK 27(11Q25) WILD-TYPE    198    108    132
D77V10, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         20                          198
  CLUS_2                         64                          108
  CLUS_3                          8                          132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q25) MUTATED       39     10     15     19
  DEL PEAK 27(11Q25) WILD-TYPE     77     88     77     73
D77V11, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         39                           77
  CLUS_2                         10                           88
  CLUS_3                         15                           77
  CLUS_4                         19                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q25) MUTATED       51     11     21
  DEL PEAK 27(11Q25) WILD-TYPE    112    121     82
D77V12, multiclass
        clus
vv       DEL PEAK 27(11Q25) MUTATED DEL PEAK 27(11Q25) WILD-TYPE
  CLUS_1                         51                          112
  CLUS_2                         11                          121
  CLUS_3                         21                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 28(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q23.1) MUTATED        0      2      0      0
  DEL PEAK 28(12Q23.1) WILD-TYPE     15     15     14      7
D78V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 28(12Q23.1) MUTATED"
clus
  DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 28(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q23.1) MUTATED        0      2      0      0      0
  DEL PEAK 28(12Q23.1) WILD-TYPE     14      7      7      7     16
D78V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 28(12Q23.1) MUTATED"
clus
  DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 28(12Q23.1) WILD-TYPE" "DEL PEAK 28(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 28(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q23.1) MUTATED       55      0      0      1
  DEL PEAK 28(12Q23.1) WILD-TYPE    153    178     99     53
D78V3, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           55                            153
  CLUS_2                            0                            178
  CLUS_3                            0                             99
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q23.1) MUTATED       33     13      2
  DEL PEAK 28(12Q23.1) WILD-TYPE    121     65    191
D78V4, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           33                            121
  CLUS_2                           13                             65
  CLUS_3                            2                            191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q23.1) MUTATED        1      0      3      8     16      9
  DEL PEAK 28(12Q23.1) WILD-TYPE     38     81     49     48     68     59
                                vv
clus                             CLUS_7
  DEL PEAK 28(12Q23.1) MUTATED       11
  DEL PEAK 28(12Q23.1) WILD-TYPE     42
D78V5, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            0                             81
  CLUS_3                            3                             49
  CLUS_4                            8                             48
  CLUS_5                           16                             68
  CLUS_6                            9                             59
  CLUS_7                           11                             42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q23.1) MUTATED        0     32     10      6
  DEL PEAK 28(12Q23.1) WILD-TYPE    108    150     83     44
D78V6, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                            0                            108
  CLUS_2                           32                            150
  CLUS_3                           10                             83
  CLUS_4                            6                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q23.1) MUTATED       47      1      5      3
  DEL PEAK 28(12Q23.1) WILD-TYPE    141    122     88    130
D78V7, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           47                            141
  CLUS_2                            1                            122
  CLUS_3                            5                             88
  CLUS_4                            3                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q23.1) MUTATED       39      0      9      0      3      5
  DEL PEAK 28(12Q23.1) WILD-TYPE     84     53     38     65    105     61
                                vv
clus                             CLUS_7
  DEL PEAK 28(12Q23.1) MUTATED        0
  DEL PEAK 28(12Q23.1) WILD-TYPE     75
D78V8, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           39                             84
  CLUS_2                            0                             53
  CLUS_3                            9                             38
  CLUS_4                            0                             65
  CLUS_5                            3                            105
  CLUS_6                            5                             61
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q23.1) MUTATED       36      4      4      2      8
  DEL PEAK 28(12Q23.1) WILD-TYPE    128     76    102    131     39
D78V9, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           36                            128
  CLUS_2                            4                             76
  CLUS_3                            4                            102
  CLUS_4                            2                            131
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q23.1) MUTATED       10     44      0
  DEL PEAK 28(12Q23.1) WILD-TYPE    208    128    140
D78V10, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           10                            208
  CLUS_2                           44                            128
  CLUS_3                            0                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q23.1) MUTATED       27      2      8     10
  DEL PEAK 28(12Q23.1) WILD-TYPE     89     96     84     82
D78V11, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           27                             89
  CLUS_2                            2                             96
  CLUS_3                            8                             84
  CLUS_4                           10                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q23.1) MUTATED       29      2     16
  DEL PEAK 28(12Q23.1) WILD-TYPE    134    130     87
D78V12, multiclass
        clus
vv       DEL PEAK 28(12Q23.1) MUTATED DEL PEAK 28(12Q23.1) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                            2                            130
  CLUS_3                           16                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 29(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q24.33) MUTATED        0      2      0      0
  DEL PEAK 29(12Q24.33) WILD-TYPE     15     15     14      7
D79V1, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 29(12Q24.33) MUTATED"
clus
  DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 29(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(12Q24.33) MUTATED        0      2      0      0      0
  DEL PEAK 29(12Q24.33) WILD-TYPE     14      7      7      7     16
D79V2, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 29(12Q24.33) MUTATED"
clus
  DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 29(12Q24.33) WILD-TYPE" "DEL PEAK 29(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 29(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q24.33) MUTATED       64      0      0      2
  DEL PEAK 29(12Q24.33) WILD-TYPE    144    178     99     52
D79V3, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            64                             144
  CLUS_2                             0                             178
  CLUS_3                             0                              99
  CLUS_4                             2                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q24.33) MUTATED       42     15      4
  DEL PEAK 29(12Q24.33) WILD-TYPE    112     63    189
D79V4, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            42                             112
  CLUS_2                            15                              63
  CLUS_3                             4                             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(12Q24.33) MUTATED        1      1      4      9     19      9
  DEL PEAK 29(12Q24.33) WILD-TYPE     38     80     48     47     65     59
                                 vv
clus                              CLUS_7
  DEL PEAK 29(12Q24.33) MUTATED       10
  DEL PEAK 29(12Q24.33) WILD-TYPE     43
D79V5, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                             1                              38
  CLUS_2                             1                              80
  CLUS_3                             4                              48
  CLUS_4                             9                              47
  CLUS_5                            19                              65
  CLUS_6                             9                              59
  CLUS_7                            10                              43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q24.33) MUTATED        0     36     12      5
  DEL PEAK 29(12Q24.33) WILD-TYPE    108    146     81     45
D79V6, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                             0                             108
  CLUS_2                            36                             146
  CLUS_3                            12                              81
  CLUS_4                             5                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q24.33) MUTATED       59      0      4      3
  DEL PEAK 29(12Q24.33) WILD-TYPE    129    123     89    130
D79V7, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            59                             129
  CLUS_2                             0                             123
  CLUS_3                             4                              89
  CLUS_4                             3                             130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(12Q24.33) MUTATED       45      0      8      0      9      4
  DEL PEAK 29(12Q24.33) WILD-TYPE     78     53     39     65     99     62
                                 vv
clus                              CLUS_7
  DEL PEAK 29(12Q24.33) MUTATED        0
  DEL PEAK 29(12Q24.33) WILD-TYPE     75
D79V8, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            45                              78
  CLUS_2                             0                              53
  CLUS_3                             8                              39
  CLUS_4                             0                              65
  CLUS_5                             9                              99
  CLUS_6                             4                              62
  CLUS_7                             0                              75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(12Q24.33) MUTATED       48      3      3      3      7
  DEL PEAK 29(12Q24.33) WILD-TYPE    116     77    103    130     40
D79V9, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            48                             116
  CLUS_2                             3                              77
  CLUS_3                             3                             103
  CLUS_4                             3                             130
  CLUS_5                             7                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q24.33) MUTATED       13     49      2
  DEL PEAK 29(12Q24.33) WILD-TYPE    205    123    138
D79V10, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            13                             205
  CLUS_2                            49                             123
  CLUS_3                             2                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q24.33) MUTATED       33      3      9     14
  DEL PEAK 29(12Q24.33) WILD-TYPE     83     95     83     78
D79V11, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            33                              83
  CLUS_2                             3                              95
  CLUS_3                             9                              83
  CLUS_4                            14                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q24.33) MUTATED       36      5     18
  DEL PEAK 29(12Q24.33) WILD-TYPE    127    127     85
D79V12, multiclass
        clus
vv       DEL PEAK 29(12Q24.33) MUTATED DEL PEAK 29(12Q24.33) WILD-TYPE
  CLUS_1                            36                             127
  CLUS_2                             5                             127
  CLUS_3                            18                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 30(13Q11) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q11) MUTATED        1      4      1      0
  DEL PEAK 30(13Q11) WILD-TYPE     14     13     13      7
D80V1, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                          4                           13
  CLUS_3                          1                           13
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q11) MUTATED        3      3      0      0      0
  DEL PEAK 30(13Q11) WILD-TYPE     11      6      7      7     16
D80V2, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q11) MUTATED       94      1      2      1
  DEL PEAK 30(13Q11) WILD-TYPE    114    177     97     53
D80V3, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         94                          114
  CLUS_2                          1                          177
  CLUS_3                          2                           97
  CLUS_4                          1                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q11) MUTATED       53     18     13
  DEL PEAK 30(13Q11) WILD-TYPE    101     60    180
D80V4, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         53                          101
  CLUS_2                         18                           60
  CLUS_3                         13                          180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 30(13Q11) MUTATED        3      2      5     17     24      9     14
  DEL PEAK 30(13Q11) WILD-TYPE     36     79     47     39     60     59     39
D80V5, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                          3                           36
  CLUS_2                          2                           79
  CLUS_3                          5                           47
  CLUS_4                         17                           39
  CLUS_5                         24                           60
  CLUS_6                          9                           59
  CLUS_7                         14                           39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q11) MUTATED        4     45     17      8
  DEL PEAK 30(13Q11) WILD-TYPE    104    137     76     42
D80V6, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                          4                          104
  CLUS_2                         45                          137
  CLUS_3                         17                           76
  CLUS_4                          8                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q11) MUTATED       70     10      5     13
  DEL PEAK 30(13Q11) WILD-TYPE    118    113     88    120
D80V7, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         70                          118
  CLUS_2                         10                          113
  CLUS_3                          5                           88
  CLUS_4                         13                          120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 30(13Q11) MUTATED       52      1     11      0     21     12      1
  DEL PEAK 30(13Q11) WILD-TYPE     71     52     36     65     87     54     74
D80V8, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         52                           71
  CLUS_2                          1                           52
  CLUS_3                         11                           36
  CLUS_4                          0                           65
  CLUS_5                         21                           87
  CLUS_6                         12                           54
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q11) MUTATED       61      8      6     13      9
  DEL PEAK 30(13Q11) WILD-TYPE    103     72    100    120     38
D80V9, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         61                          103
  CLUS_2                          8                           72
  CLUS_3                          6                          100
  CLUS_4                         13                          120
  CLUS_5                          9                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q11) MUTATED       28     58     11
  DEL PEAK 30(13Q11) WILD-TYPE    190    114    129
D80V10, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         28                          190
  CLUS_2                         58                          114
  CLUS_3                         11                          129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q11) MUTATED       37     14     19     13
  DEL PEAK 30(13Q11) WILD-TYPE     79     84     73     79
D80V11, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         37                           79
  CLUS_2                         14                           84
  CLUS_3                         19                           73
  CLUS_4                         13                           79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q11) MUTATED       39     16     28
  DEL PEAK 30(13Q11) WILD-TYPE    124    116     75
D80V12, multiclass
        clus
vv       DEL PEAK 30(13Q11) MUTATED DEL PEAK 30(13Q11) WILD-TYPE
  CLUS_1                         39                          124
  CLUS_2                         16                          116
  CLUS_3                         28                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 31(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED        1      2      1      0
  DEL PEAK 31(13Q14.2) WILD-TYPE     14     15     13      7
D81V1, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            2                             15
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q14.2) MUTATED        3      1      0      0      0
  DEL PEAK 31(13Q14.2) WILD-TYPE     11      8      7      7     16
D81V2, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            1                              8
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED      100      3      1      2
  DEL PEAK 31(13Q14.2) WILD-TYPE    108    175     98     52
D81V3, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                          100                            108
  CLUS_2                            3                            175
  CLUS_3                            1                             98
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       54     22     17
  DEL PEAK 31(13Q14.2) WILD-TYPE    100     56    176
D81V4, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           54                            100
  CLUS_2                           22                             56
  CLUS_3                           17                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(13Q14.2) MUTATED        4      5      6     18     28      9
  DEL PEAK 31(13Q14.2) WILD-TYPE     35     76     46     38     56     59
                                vv
clus                             CLUS_7
  DEL PEAK 31(13Q14.2) MUTATED       13
  DEL PEAK 31(13Q14.2) WILD-TYPE     40
D81V5, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            5                             76
  CLUS_3                            6                             46
  CLUS_4                           18                             38
  CLUS_5                           28                             56
  CLUS_6                            9                             59
  CLUS_7                           13                             40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED        6     50     18      9
  DEL PEAK 31(13Q14.2) WILD-TYPE    102    132     75     41
D81V6, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                            6                            102
  CLUS_2                           50                            132
  CLUS_3                           18                             75
  CLUS_4                            9                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       71     12      7     16
  DEL PEAK 31(13Q14.2) WILD-TYPE    117    111     86    117
D81V7, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           71                            117
  CLUS_2                           12                            111
  CLUS_3                            7                             86
  CLUS_4                           16                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(13Q14.2) MUTATED       47      3     15      0     25     14
  DEL PEAK 31(13Q14.2) WILD-TYPE     76     50     32     65     83     52
                                vv
clus                             CLUS_7
  DEL PEAK 31(13Q14.2) MUTATED        2
  DEL PEAK 31(13Q14.2) WILD-TYPE     73
D81V8, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           47                             76
  CLUS_2                            3                             50
  CLUS_3                           15                             32
  CLUS_4                            0                             65
  CLUS_5                           25                             83
  CLUS_6                           14                             52
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q14.2) MUTATED       65     11      6     17      6
  DEL PEAK 31(13Q14.2) WILD-TYPE     99     69    100    116     41
D81V9, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           65                             99
  CLUS_2                           11                             69
  CLUS_3                            6                            100
  CLUS_4                           17                            116
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       32     59     14
  DEL PEAK 31(13Q14.2) WILD-TYPE    186    113    126
D81V10, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           32                            186
  CLUS_2                           59                            113
  CLUS_3                           14                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q14.2) MUTATED       39     18     20     16
  DEL PEAK 31(13Q14.2) WILD-TYPE     77     80     72     76
D81V11, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           39                             77
  CLUS_2                           18                             80
  CLUS_3                           20                             72
  CLUS_4                           16                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q14.2) MUTATED       47     20     26
  DEL PEAK 31(13Q14.2) WILD-TYPE    116    112     77
D81V12, multiclass
        clus
vv       DEL PEAK 31(13Q14.2) MUTATED DEL PEAK 31(13Q14.2) WILD-TYPE
  CLUS_1                           47                            116
  CLUS_2                           20                            112
  CLUS_3                           26                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 32(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q13.1) MUTATED        0      5      0      0
  DEL PEAK 32(14Q13.1) WILD-TYPE     15     12     14      7
D82V1, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            5                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(14Q13.1) MUTATED        1      4      0      0      0
  DEL PEAK 32(14Q13.1) WILD-TYPE     13      5      7      7     16
D82V2, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q13.1) MUTATED       69      2      0      2
  DEL PEAK 32(14Q13.1) WILD-TYPE    139    176     99     52
D82V3, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           69                            139
  CLUS_2                            2                            176
  CLUS_3                            0                             99
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q13.1) MUTATED       44     15      5
  DEL PEAK 32(14Q13.1) WILD-TYPE    110     63    188
D82V4, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           44                            110
  CLUS_2                           15                             63
  CLUS_3                            5                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(14Q13.1) MUTATED        1      1      3      7     23      9
  DEL PEAK 32(14Q13.1) WILD-TYPE     38     80     49     49     61     59
                                vv
clus                             CLUS_7
  DEL PEAK 32(14Q13.1) MUTATED       11
  DEL PEAK 32(14Q13.1) WILD-TYPE     42
D82V5, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            1                             80
  CLUS_3                            3                             49
  CLUS_4                            7                             49
  CLUS_5                           23                             61
  CLUS_6                            9                             59
  CLUS_7                           11                             42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q13.1) MUTATED        1     39      8      7
  DEL PEAK 32(14Q13.1) WILD-TYPE    107    143     85     43
D82V6, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           39                            143
  CLUS_3                            8                             85
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q13.1) MUTATED       57      4      5      6
  DEL PEAK 32(14Q13.1) WILD-TYPE    131    119     88    127
D82V7, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           57                            131
  CLUS_2                            4                            119
  CLUS_3                            5                             88
  CLUS_4                            6                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(14Q13.1) MUTATED       50      1      5      1      9      5
  DEL PEAK 32(14Q13.1) WILD-TYPE     73     52     42     64     99     61
                                vv
clus                             CLUS_7
  DEL PEAK 32(14Q13.1) MUTATED        1
  DEL PEAK 32(14Q13.1) WILD-TYPE     74
D82V8, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           50                             73
  CLUS_2                            1                             52
  CLUS_3                            5                             42
  CLUS_4                            1                             64
  CLUS_5                            9                             99
  CLUS_6                            5                             61
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(14Q13.1) MUTATED       50      6      6      4      6
  DEL PEAK 32(14Q13.1) WILD-TYPE    114     74    100    129     41
D82V9, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           50                            114
  CLUS_2                            6                             74
  CLUS_3                            6                            100
  CLUS_4                            4                            129
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q13.1) MUTATED       14     54      4
  DEL PEAK 32(14Q13.1) WILD-TYPE    204    118    136
D82V10, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           14                            204
  CLUS_2                           54                            118
  CLUS_3                            4                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q13.1) MUTATED       29      5     16     14
  DEL PEAK 32(14Q13.1) WILD-TYPE     87     93     76     78
D82V11, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           29                             87
  CLUS_2                            5                             93
  CLUS_3                           16                             76
  CLUS_4                           14                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q13.1) MUTATED       38      8     18
  DEL PEAK 32(14Q13.1) WILD-TYPE    125    124     85
D82V12, multiclass
        clus
vv       DEL PEAK 32(14Q13.1) MUTATED DEL PEAK 32(14Q13.1) WILD-TYPE
  CLUS_1                           38                            125
  CLUS_2                            8                            124
  CLUS_3                           18                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 33(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.1) MUTATED        1      5      0      0
  DEL PEAK 33(15Q15.1) WILD-TYPE     14     12     14      7
D83V1, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q15.1) MUTATED        1      4      0      1      0
  DEL PEAK 33(15Q15.1) WILD-TYPE     13      5      7      6     16
D83V2, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.1) MUTATED      133      1      2      4
  DEL PEAK 33(15Q15.1) WILD-TYPE     75    177     97     50
D83V3, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                          133                             75
  CLUS_2                            1                            177
  CLUS_3                            2                             97
  CLUS_4                            4                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.1) MUTATED       76     35     14
  DEL PEAK 33(15Q15.1) WILD-TYPE     78     43    179
D83V4, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                           76                             78
  CLUS_2                           35                             43
  CLUS_3                           14                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q15.1) MUTATED        6      2      7     22     38     16
  DEL PEAK 33(15Q15.1) WILD-TYPE     33     79     45     34     46     52
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q15.1) MUTATED       20
  DEL PEAK 33(15Q15.1) WILD-TYPE     33
D83V5, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                            2                             79
  CLUS_3                            7                             45
  CLUS_4                           22                             34
  CLUS_5                           38                             46
  CLUS_6                           16                             52
  CLUS_7                           20                             33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.1) MUTATED        6     71     23     11
  DEL PEAK 33(15Q15.1) WILD-TYPE    102    111     70     39
D83V6, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                            6                            102
  CLUS_2                           71                            111
  CLUS_3                           23                             70
  CLUS_4                           11                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.1) MUTATED      112     10      9      9
  DEL PEAK 33(15Q15.1) WILD-TYPE     76    113     84    124
D83V7, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                          112                             76
  CLUS_2                           10                            113
  CLUS_3                            9                             84
  CLUS_4                            9                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q15.1) MUTATED       86      1     14      4     25      9
  DEL PEAK 33(15Q15.1) WILD-TYPE     37     52     33     61     83     57
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q15.1) MUTATED        1
  DEL PEAK 33(15Q15.1) WILD-TYPE     74
D83V8, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                           86                             37
  CLUS_2                            1                             52
  CLUS_3                           14                             33
  CLUS_4                            4                             61
  CLUS_5                           25                             83
  CLUS_6                            9                             57
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q15.1) MUTATED       98      8      6     11     15
  DEL PEAK 33(15Q15.1) WILD-TYPE     66     72    100    122     32
D83V9, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                           98                             66
  CLUS_2                            8                             72
  CLUS_3                            6                            100
  CLUS_4                           11                            122
  CLUS_5                           15                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.1) MUTATED       35     94      9
  DEL PEAK 33(15Q15.1) WILD-TYPE    183     78    131
D83V10, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                           35                            183
  CLUS_2                           94                             78
  CLUS_3                            9                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.1) MUTATED       60     11     29     22
  DEL PEAK 33(15Q15.1) WILD-TYPE     56     87     63     70
D83V11, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                           60                             56
  CLUS_2                           11                             87
  CLUS_3                           29                             63
  CLUS_4                           22                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.1) MUTATED       68     16     38
  DEL PEAK 33(15Q15.1) WILD-TYPE     95    116     65
D83V12, multiclass
        clus
vv       DEL PEAK 33(15Q15.1) MUTATED DEL PEAK 33(15Q15.1) WILD-TYPE
  CLUS_1                           68                             95
  CLUS_2                           16                            116
  CLUS_3                           38                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 34(15Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q23) MUTATED        0      6      0      0
  DEL PEAK 34(15Q23) WILD-TYPE     15     11     14      7
D84V1, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          6                           11
  CLUS_3                          0                           14
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(15Q23) MUTATED        1      5      0      0      0
  DEL PEAK 34(15Q23) WILD-TYPE     13      4      7      7     16
D84V2, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          5                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q23) MUTATED      110      0      2      3
  DEL PEAK 34(15Q23) WILD-TYPE     98    178     97     51
D84V3, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                        110                           98
  CLUS_2                          0                          178
  CLUS_3                          2                           97
  CLUS_4                          3                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q23) MUTATED       67     24     10
  DEL PEAK 34(15Q23) WILD-TYPE     87     54    183
D84V4, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         67                           87
  CLUS_2                         24                           54
  CLUS_3                         10                          183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 34(15Q23) MUTATED        4      3      7     15     33     15     14
  DEL PEAK 34(15Q23) WILD-TYPE     35     78     45     41     51     53     39
D84V5, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                          4                           35
  CLUS_2                          3                           78
  CLUS_3                          7                           45
  CLUS_4                         15                           41
  CLUS_5                         33                           51
  CLUS_6                         15                           53
  CLUS_7                         14                           39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q23) MUTATED        4     57     20     10
  DEL PEAK 34(15Q23) WILD-TYPE    104    125     73     40
D84V6, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                          4                          104
  CLUS_2                         57                          125
  CLUS_3                         20                           73
  CLUS_4                         10                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q23) MUTATED       92     11      6      6
  DEL PEAK 34(15Q23) WILD-TYPE     96    112     87    127
D84V7, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         92                           96
  CLUS_2                         11                          112
  CLUS_3                          6                           87
  CLUS_4                          6                          127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 34(15Q23) MUTATED       75      1     12      2     17      7      1
  DEL PEAK 34(15Q23) WILD-TYPE     48     52     35     63     91     59     74
D84V8, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         75                           48
  CLUS_2                          1                           52
  CLUS_3                         12                           35
  CLUS_4                          2                           63
  CLUS_5                         17                           91
  CLUS_6                          7                           59
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(15Q23) MUTATED       81      8      4      9     11
  DEL PEAK 34(15Q23) WILD-TYPE     83     72    102    124     36
D84V9, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         81                           83
  CLUS_2                          8                           72
  CLUS_3                          4                          102
  CLUS_4                          9                          124
  CLUS_5                         11                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q23) MUTATED       30     77      6
  DEL PEAK 34(15Q23) WILD-TYPE    188     95    134
D84V10, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         30                          188
  CLUS_2                         77                           95
  CLUS_3                          6                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q23) MUTATED       51      8     20     19
  DEL PEAK 34(15Q23) WILD-TYPE     65     90     72     73
D84V11, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         51                           65
  CLUS_2                          8                           90
  CLUS_3                         20                           72
  CLUS_4                         19                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q23) MUTATED       60      9     29
  DEL PEAK 34(15Q23) WILD-TYPE    103    123     74
D84V12, multiclass
        clus
vv       DEL PEAK 34(15Q23) MUTATED DEL PEAK 34(15Q23) WILD-TYPE
  CLUS_1                         60                          103
  CLUS_2                          9                          123
  CLUS_3                         29                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 35(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED        1      6      0      0
  DEL PEAK 35(16P13.3) WILD-TYPE     14     11     14      7
D85V1, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16P13.3) MUTATED        3      4      0      0      0
  DEL PEAK 35(16P13.3) WILD-TYPE     11      5      7      7     16
D85V2, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED       90      0      1      1
  DEL PEAK 35(16P13.3) WILD-TYPE    118    178     98     53
D85V3, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           90                            118
  CLUS_2                            0                            178
  CLUS_3                            1                             98
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       52     26      5
  DEL PEAK 35(16P13.3) WILD-TYPE    102     52    188
D85V4, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           52                            102
  CLUS_2                           26                             52
  CLUS_3                            5                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16P13.3) MUTATED        2      2      4     15     29     11
  DEL PEAK 35(16P13.3) WILD-TYPE     37     79     48     41     55     57
                                vv
clus                             CLUS_7
  DEL PEAK 35(16P13.3) MUTATED       13
  DEL PEAK 35(16P13.3) WILD-TYPE     40
D85V5, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            2                             79
  CLUS_3                            4                             48
  CLUS_4                           15                             41
  CLUS_5                           29                             55
  CLUS_6                           11                             57
  CLUS_7                           13                             40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED        1     53     15      7
  DEL PEAK 35(16P13.3) WILD-TYPE    107    129     78     43
D85V6, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                            1                            107
  CLUS_2                           53                            129
  CLUS_3                           15                             78
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED       79      4      2      7
  DEL PEAK 35(16P13.3) WILD-TYPE    109    119     91    126
D85V7, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           79                            109
  CLUS_2                            4                            119
  CLUS_3                            2                             91
  CLUS_4                            7                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16P13.3) MUTATED       63      1      9      1     11      6
  DEL PEAK 35(16P13.3) WILD-TYPE     60     52     38     64     97     60
                                vv
clus                             CLUS_7
  DEL PEAK 35(16P13.3) MUTATED        1
  DEL PEAK 35(16P13.3) WILD-TYPE     74
D85V8, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           63                             60
  CLUS_2                            1                             52
  CLUS_3                            9                             38
  CLUS_4                            1                             64
  CLUS_5                           11                             97
  CLUS_6                            6                             60
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16P13.3) MUTATED       66      4      5      7      8
  DEL PEAK 35(16P13.3) WILD-TYPE     98     76    101    126     39
D85V9, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           66                             98
  CLUS_2                            4                             76
  CLUS_3                            5                            101
  CLUS_4                            7                            126
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       17     68      5
  DEL PEAK 35(16P13.3) WILD-TYPE    201    104    135
D85V10, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           17                            201
  CLUS_2                           68                            104
  CLUS_3                            5                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16P13.3) MUTATED       43      8     18     13
  DEL PEAK 35(16P13.3) WILD-TYPE     73     90     74     79
D85V11, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           43                             73
  CLUS_2                            8                             90
  CLUS_3                           18                             74
  CLUS_4                           13                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16P13.3) MUTATED       48      8     26
  DEL PEAK 35(16P13.3) WILD-TYPE    115    124     77
D85V12, multiclass
        clus
vv       DEL PEAK 35(16P13.3) MUTATED DEL PEAK 35(16P13.3) WILD-TYPE
  CLUS_1                           48                            115
  CLUS_2                            8                            124
  CLUS_3                           26                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 36(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q21) MUTATED        0      8      1      0
  DEL PEAK 36(16Q21) WILD-TYPE     15      9     13      7
D86V1, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          8                            9
  CLUS_3                          1                           13
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q21) MUTATED        1      7      0      0      1
  DEL PEAK 36(16Q21) WILD-TYPE     13      2      7      7     15
D86V2, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          7                            2
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          1                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q21) MUTATED      139      3      9      3
  DEL PEAK 36(16Q21) WILD-TYPE     69    175     90     51
D86V3, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                        139                           69
  CLUS_2                          3                          175
  CLUS_3                          9                           90
  CLUS_4                          3                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q21) MUTATED       80     37     18
  DEL PEAK 36(16Q21) WILD-TYPE     74     41    175
D86V4, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         80                           74
  CLUS_2                         37                           41
  CLUS_3                         18                          175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(16Q21) MUTATED        4      7     10     22     45     18     18
  DEL PEAK 36(16Q21) WILD-TYPE     35     74     42     34     39     50     35
D86V5, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                          4                           35
  CLUS_2                          7                           74
  CLUS_3                         10                           42
  CLUS_4                         22                           34
  CLUS_5                         45                           39
  CLUS_6                         18                           50
  CLUS_7                         18                           35
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q21) MUTATED       10     81     22     11
  DEL PEAK 36(16Q21) WILD-TYPE     98    101     71     39
D86V6, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         10                           98
  CLUS_2                         81                          101
  CLUS_3                         22                           71
  CLUS_4                         11                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q21) MUTATED      113     15     11     14
  DEL PEAK 36(16Q21) WILD-TYPE     75    108     82    119
D86V7, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                        113                           75
  CLUS_2                         15                          108
  CLUS_3                         11                           82
  CLUS_4                         14                          119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(16Q21) MUTATED       89      7     17      3     22     11      4
  DEL PEAK 36(16Q21) WILD-TYPE     34     46     30     62     86     55     71
D86V8, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         89                           34
  CLUS_2                          7                           46
  CLUS_3                         17                           30
  CLUS_4                          3                           62
  CLUS_5                         22                           86
  CLUS_6                         11                           55
  CLUS_7                          4                           71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q21) MUTATED       96     13     13     15     13
  DEL PEAK 36(16Q21) WILD-TYPE     68     67     93    118     34
D86V9, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         96                           68
  CLUS_2                         13                           67
  CLUS_3                         13                           93
  CLUS_4                         15                          118
  CLUS_5                         13                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q21) MUTATED       38     98     14
  DEL PEAK 36(16Q21) WILD-TYPE    180     74    126
D86V10, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         38                          180
  CLUS_2                         98                           74
  CLUS_3                         14                          126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q21) MUTATED       55     16     29     31
  DEL PEAK 36(16Q21) WILD-TYPE     61     82     63     61
D86V11, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         55                           61
  CLUS_2                         16                           82
  CLUS_3                         29                           63
  CLUS_4                         31                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q21) MUTATED       70     22     39
  DEL PEAK 36(16Q21) WILD-TYPE     93    110     64
D86V12, multiclass
        clus
vv       DEL PEAK 36(16Q21) MUTATED DEL PEAK 36(16Q21) WILD-TYPE
  CLUS_1                         70                           93
  CLUS_2                         22                          110
  CLUS_3                         39                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 37(16Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q22.3) MUTATED        1      7      2      0
  DEL PEAK 37(16Q22.3) WILD-TYPE     14     10     12      7
D87V1, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            7                             10
  CLUS_3                            2                             12
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q22.3) MUTATED        4      5      0      0      1
  DEL PEAK 37(16Q22.3) WILD-TYPE     10      4      7      7     15
D87V2, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q22.3) MUTATED      140      3     12      3
  DEL PEAK 37(16Q22.3) WILD-TYPE     68    175     87     51
D87V3, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                          140                             68
  CLUS_2                            3                            175
  CLUS_3                           12                             87
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q22.3) MUTATED       78     39     21
  DEL PEAK 37(16Q22.3) WILD-TYPE     76     39    172
D87V4, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           78                             76
  CLUS_2                           39                             39
  CLUS_3                           21                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q22.3) MUTATED        5      7      9     27     42     17
  DEL PEAK 37(16Q22.3) WILD-TYPE     34     74     43     29     42     51
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q22.3) MUTATED       16
  DEL PEAK 37(16Q22.3) WILD-TYPE     37
D87V5, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            7                             74
  CLUS_3                            9                             43
  CLUS_4                           27                             29
  CLUS_5                           42                             42
  CLUS_6                           17                             51
  CLUS_7                           16                             37
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q22.3) MUTATED       13     78     22     10
  DEL PEAK 37(16Q22.3) WILD-TYPE     95    104     71     40
D87V6, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           13                             95
  CLUS_2                           78                            104
  CLUS_3                           22                             71
  CLUS_4                           10                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q22.3) MUTATED      114     16     12     16
  DEL PEAK 37(16Q22.3) WILD-TYPE     74    107     81    117
D87V7, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                          114                             74
  CLUS_2                           16                            107
  CLUS_3                           12                             81
  CLUS_4                           16                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q22.3) MUTATED       88      8     18      3     24     12
  DEL PEAK 37(16Q22.3) WILD-TYPE     35     45     29     62     84     54
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q22.3) MUTATED        5
  DEL PEAK 37(16Q22.3) WILD-TYPE     70
D87V8, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           88                             35
  CLUS_2                            8                             45
  CLUS_3                           18                             29
  CLUS_4                            3                             62
  CLUS_5                           24                             84
  CLUS_6                           12                             54
  CLUS_7                            5                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q22.3) MUTATED       94     14     14     17     15
  DEL PEAK 37(16Q22.3) WILD-TYPE     70     66     92    116     32
D87V9, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           94                             70
  CLUS_2                           14                             66
  CLUS_3                           14                             92
  CLUS_4                           17                            116
  CLUS_5                           15                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q22.3) MUTATED       39     99     16
  DEL PEAK 37(16Q22.3) WILD-TYPE    179     73    124
D87V10, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           39                            179
  CLUS_2                           99                             73
  CLUS_3                           16                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q22.3) MUTATED       55     17     31     31
  DEL PEAK 37(16Q22.3) WILD-TYPE     61     81     61     61
D87V11, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           55                             61
  CLUS_2                           17                             81
  CLUS_3                           31                             61
  CLUS_4                           31                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q22.3) MUTATED       69     22     43
  DEL PEAK 37(16Q22.3) WILD-TYPE     94    110     60
D87V12, multiclass
        clus
vv       DEL PEAK 37(16Q22.3) MUTATED DEL PEAK 37(16Q22.3) WILD-TYPE
  CLUS_1                           69                             94
  CLUS_2                           22                            110
  CLUS_3                           43                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 38(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED        1      9      2      0
  DEL PEAK 38(16Q23.1) WILD-TYPE     14      8     12      7
D88V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            9                              8
  CLUS_3                            2                             12
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16Q23.1) MUTATED        4      7      0      0      1
  DEL PEAK 38(16Q23.1) WILD-TYPE     10      2      7      7     15
D88V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED      147      4     12      3
  DEL PEAK 38(16Q23.1) WILD-TYPE     61    174     87     51
D88V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                          147                             61
  CLUS_2                            4                            174
  CLUS_3                           12                             87
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       84     37     21
  DEL PEAK 38(16Q23.1) WILD-TYPE     70     41    172
D88V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           84                             70
  CLUS_2                           37                             41
  CLUS_3                           21                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16Q23.1) MUTATED        5      7     10     28     45     19
  DEL PEAK 38(16Q23.1) WILD-TYPE     34     74     42     28     39     49
                                vv
clus                             CLUS_7
  DEL PEAK 38(16Q23.1) MUTATED       18
  DEL PEAK 38(16Q23.1) WILD-TYPE     35
D88V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            7                             74
  CLUS_3                           10                             42
  CLUS_4                           28                             28
  CLUS_5                           45                             39
  CLUS_6                           19                             49
  CLUS_7                           18                             35
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       13     84     23     12
  DEL PEAK 38(16Q23.1) WILD-TYPE     95     98     70     38
D88V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           13                             95
  CLUS_2                           84                             98
  CLUS_3                           23                             70
  CLUS_4                           12                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED      120     16     15     15
  DEL PEAK 38(16Q23.1) WILD-TYPE     68    107     78    118
D88V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                          120                             68
  CLUS_2                           16                            107
  CLUS_3                           15                             78
  CLUS_4                           15                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(16Q23.1) MUTATED       93      8     20      4     25     11
  DEL PEAK 38(16Q23.1) WILD-TYPE     30     45     27     61     83     55
                                vv
clus                             CLUS_7
  DEL PEAK 38(16Q23.1) MUTATED        5
  DEL PEAK 38(16Q23.1) WILD-TYPE     70
D88V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           93                             30
  CLUS_2                            8                             45
  CLUS_3                           20                             27
  CLUS_4                            4                             61
  CLUS_5                           25                             83
  CLUS_6                           11                             55
  CLUS_7                            5                             70
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(16Q23.1) MUTATED      100     14     16     16     15
  DEL PEAK 38(16Q23.1) WILD-TYPE     64     66     90    117     32
D88V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                          100                             64
  CLUS_2                           14                             66
  CLUS_3                           16                             90
  CLUS_4                           16                            117
  CLUS_5                           15                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       38    108     15
  DEL PEAK 38(16Q23.1) WILD-TYPE    180     64    125
D88V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           38                            180
  CLUS_2                          108                             64
  CLUS_3                           15                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       59     16     32     31
  DEL PEAK 38(16Q23.1) WILD-TYPE     57     82     60     61
D88V11, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           59                             57
  CLUS_2                           16                             82
  CLUS_3                           32                             60
  CLUS_4                           31                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       73     21     44
  DEL PEAK 38(16Q23.1) WILD-TYPE     90    111     59
D88V12, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           73                             90
  CLUS_2                           21                            111
  CLUS_3                           44                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 39(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.3) MUTATED        0      8      1      0
  DEL PEAK 39(17P13.3) WILD-TYPE     15      9     13      7
D89V1, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            8                              9
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P13.3) MUTATED        1      7      1      0      0
  DEL PEAK 39(17P13.3) WILD-TYPE     13      2      6      7     16
D89V2, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                              2
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.3) MUTATED      116      1      3      2
  DEL PEAK 39(17P13.3) WILD-TYPE     92    177     96     52
D89V3, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                          116                             92
  CLUS_2                            1                            177
  CLUS_3                            3                             96
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.3) MUTATED       62     26     16
  DEL PEAK 39(17P13.3) WILD-TYPE     92     52    177
D89V4, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           62                             92
  CLUS_2                           26                             52
  CLUS_3                           16                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P13.3) MUTATED        4      2      6     17     37     14
  DEL PEAK 39(17P13.3) WILD-TYPE     35     79     46     39     47     54
                                vv
clus                             CLUS_7
  DEL PEAK 39(17P13.3) MUTATED       17
  DEL PEAK 39(17P13.3) WILD-TYPE     36
D89V5, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            2                             79
  CLUS_3                            6                             46
  CLUS_4                           17                             39
  CLUS_5                           37                             47
  CLUS_6                           14                             54
  CLUS_7                           17                             36
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.3) MUTATED        4     62     21     10
  DEL PEAK 39(17P13.3) WILD-TYPE    104    120     72     40
D89V6, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           62                            120
  CLUS_3                           21                             72
  CLUS_4                           10                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.3) MUTATED       94      8      6     13
  DEL PEAK 39(17P13.3) WILD-TYPE     94    115     87    120
D89V7, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           94                             94
  CLUS_2                            8                            115
  CLUS_3                            6                             87
  CLUS_4                           13                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P13.3) MUTATED       79      1      8      3     16     13
  DEL PEAK 39(17P13.3) WILD-TYPE     44     52     39     62     92     53
                                vv
clus                             CLUS_7
  DEL PEAK 39(17P13.3) MUTATED        1
  DEL PEAK 39(17P13.3) WILD-TYPE     74
D89V8, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           79                             44
  CLUS_2                            1                             52
  CLUS_3                            8                             39
  CLUS_4                            3                             62
  CLUS_5                           16                             92
  CLUS_6                           13                             53
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P13.3) MUTATED       81      8      8     13      9
  DEL PEAK 39(17P13.3) WILD-TYPE     83     72     98    120     38
D89V9, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           81                             83
  CLUS_2                            8                             72
  CLUS_3                            8                             98
  CLUS_4                           13                            120
  CLUS_5                            9                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.3) MUTATED       32     75     12
  DEL PEAK 39(17P13.3) WILD-TYPE    186     97    128
D89V10, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           32                            186
  CLUS_2                           75                             97
  CLUS_3                           12                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.3) MUTATED       50     13     23     14
  DEL PEAK 39(17P13.3) WILD-TYPE     66     85     69     78
D89V11, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           50                             66
  CLUS_2                           13                             85
  CLUS_3                           23                             69
  CLUS_4                           14                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.3) MUTATED       52     19     29
  DEL PEAK 39(17P13.3) WILD-TYPE    111    113     74
D89V12, multiclass
        clus
vv       DEL PEAK 39(17P13.3) MUTATED DEL PEAK 39(17P13.3) WILD-TYPE
  CLUS_1                           52                            111
  CLUS_2                           19                            113
  CLUS_3                           29                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DEL PEAK 40(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED        0      8      1      0
  DEL PEAK 40(17P11.2) WILD-TYPE     15      9     13      7
D90V1, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            8                              9
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P11.2) MUTATED        0      8      1      0      0
  DEL PEAK 40(17P11.2) WILD-TYPE     14      1      6      7     16
D90V2, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED      122      2      2      2
  DEL PEAK 40(17P11.2) WILD-TYPE     86    176     97     52
D90V3, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                          122                             86
  CLUS_2                            2                            176
  CLUS_3                            2                             97
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       67     31     14
  DEL PEAK 40(17P11.2) WILD-TYPE     87     47    179
D90V4, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           67                             87
  CLUS_2                           31                             47
  CLUS_3                           14                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P11.2) MUTATED        4      2      5     14     39     14
  DEL PEAK 40(17P11.2) WILD-TYPE     35     79     47     42     45     54
                                vv
clus                             CLUS_7
  DEL PEAK 40(17P11.2) MUTATED       18
  DEL PEAK 40(17P11.2) WILD-TYPE     35
D90V5, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            2                             79
  CLUS_3                            5                             47
  CLUS_4                           14                             42
  CLUS_5                           39                             45
  CLUS_6                           14                             54
  CLUS_7                           18                             35
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED        4     64     17     11
  DEL PEAK 40(17P11.2) WILD-TYPE    104    118     76     39
D90V6, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           64                            118
  CLUS_3                           17                             76
  CLUS_4                           11                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED      100      6     10     12
  DEL PEAK 40(17P11.2) WILD-TYPE     88    117     83    121
D90V7, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                          100                             88
  CLUS_2                            6                            117
  CLUS_3                           10                             83
  CLUS_4                           12                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17P11.2) MUTATED       85      1     10      2     17     12
  DEL PEAK 40(17P11.2) WILD-TYPE     38     52     37     63     91     54
                                vv
clus                             CLUS_7
  DEL PEAK 40(17P11.2) MUTATED        1
  DEL PEAK 40(17P11.2) WILD-TYPE     74
D90V8, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           85                             38
  CLUS_2                            1                             52
  CLUS_3                           10                             37
  CLUS_4                            2                             63
  CLUS_5                           17                             91
  CLUS_6                           12                             54
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17P11.2) MUTATED       85      6      8     14     11
  DEL PEAK 40(17P11.2) WILD-TYPE     79     74     98    119     36
D90V9, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           85                             79
  CLUS_2                            6                             74
  CLUS_3                            8                             98
  CLUS_4                           14                            119
  CLUS_5                           11                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       27     84     13
  DEL PEAK 40(17P11.2) WILD-TYPE    191     88    127
D90V10, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           27                            191
  CLUS_2                           84                             88
  CLUS_3                           13                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P11.2) MUTATED       50     13     25     19
  DEL PEAK 40(17P11.2) WILD-TYPE     66     85     67     73
D90V11, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           50                             66
  CLUS_2                           13                             85
  CLUS_3                           25                             67
  CLUS_4                           19                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P11.2) MUTATED       55     18     34
  DEL PEAK 40(17P11.2) WILD-TYPE    108    114     69
D90V12, multiclass
        clus
vv       DEL PEAK 40(17P11.2) MUTATED DEL PEAK 40(17P11.2) WILD-TYPE
  CLUS_1                           55                            108
  CLUS_2                           18                            114
  CLUS_3                           34                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DEL PEAK 41(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED        0      7      0      0
  DEL PEAK 41(17Q11.2) WILD-TYPE     15     10     14      7
D91V1, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            7                             10
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q11.2) MUTATED        0      7      0      0      0
  DEL PEAK 41(17Q11.2) WILD-TYPE     14      2      7      7     16
D91V2, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED      101      1      1      2
  DEL PEAK 41(17Q11.2) WILD-TYPE    107    177     98     52
D91V3, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                          101                            107
  CLUS_2                            1                            177
  CLUS_3                            1                             98
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       48     26     16
  DEL PEAK 41(17Q11.2) WILD-TYPE    106     52    177
D91V4, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           48                            106
  CLUS_2                           26                             52
  CLUS_3                           16                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q11.2) MUTATED        4      3      6     15     27     11
  DEL PEAK 41(17Q11.2) WILD-TYPE     35     78     46     41     57     57
                                vv
clus                             CLUS_7
  DEL PEAK 41(17Q11.2) MUTATED       14
  DEL PEAK 41(17Q11.2) WILD-TYPE     39
D91V5, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            3                             78
  CLUS_3                            6                             46
  CLUS_4                           15                             41
  CLUS_5                           27                             57
  CLUS_6                           11                             57
  CLUS_7                           14                             39
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED        4     52     16      8
  DEL PEAK 41(17Q11.2) WILD-TYPE    104    130     77     42
D91V6, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           52                            130
  CLUS_3                           16                             77
  CLUS_4                            8                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       78      8      6     12
  DEL PEAK 41(17Q11.2) WILD-TYPE    110    115     87    121
D91V7, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           78                            110
  CLUS_2                            8                            115
  CLUS_3                            6                             87
  CLUS_4                           12                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q11.2) MUTATED       62      1      6      3     19     11
  DEL PEAK 41(17Q11.2) WILD-TYPE     61     52     41     62     89     55
                                vv
clus                             CLUS_7
  DEL PEAK 41(17Q11.2) MUTATED        2
  DEL PEAK 41(17Q11.2) WILD-TYPE     73
D91V8, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           62                             61
  CLUS_2                            1                             52
  CLUS_3                            6                             41
  CLUS_4                            3                             62
  CLUS_5                           19                             89
  CLUS_6                           11                             55
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q11.2) MUTATED       66      6      7     14      8
  DEL PEAK 41(17Q11.2) WILD-TYPE     98     74     99    119     39
D91V9, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           66                             98
  CLUS_2                            6                             74
  CLUS_3                            7                             99
  CLUS_4                           14                            119
  CLUS_5                            8                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       28     60     13
  DEL PEAK 41(17Q11.2) WILD-TYPE    190    112    127
D91V10, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           28                            190
  CLUS_2                           60                            112
  CLUS_3                           13                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       38     11     20     19
  DEL PEAK 41(17Q11.2) WILD-TYPE     78     87     72     73
D91V11, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           38                             78
  CLUS_2                           11                             87
  CLUS_3                           20                             72
  CLUS_4                           19                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       43     19     26
  DEL PEAK 41(17Q11.2) WILD-TYPE    120    113     77
D91V12, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           43                            120
  CLUS_2                           19                            113
  CLUS_3                           26                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DEL PEAK 42(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q21.31) MUTATED        0      9      0      0
  DEL PEAK 42(17Q21.31) WILD-TYPE     15      8     14      7
D92V1, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                             0                              15
  CLUS_2                             9                               8
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q21.31) MUTATED        1      8      0      0      0
  DEL PEAK 42(17Q21.31) WILD-TYPE     13      1      7      7     16
D92V2, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             8                               1
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q21.31) MUTATED      111      0      1      2
  DEL PEAK 42(17Q21.31) WILD-TYPE     97    178     98     52
D92V3, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                           111                              97
  CLUS_2                             0                             178
  CLUS_3                             1                              98
  CLUS_4                             2                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q21.31) MUTATED       50     33     16
  DEL PEAK 42(17Q21.31) WILD-TYPE    104     45    177
D92V4, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            50                             104
  CLUS_2                            33                              45
  CLUS_3                            16                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q21.31) MUTATED        3      3      8     17     32     12
  DEL PEAK 42(17Q21.31) WILD-TYPE     36     78     44     39     52     56
                                 vv
clus                              CLUS_7
  DEL PEAK 42(17Q21.31) MUTATED       13
  DEL PEAK 42(17Q21.31) WILD-TYPE     40
D92V5, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             3                              78
  CLUS_3                             8                              44
  CLUS_4                            17                              39
  CLUS_5                            32                              52
  CLUS_6                            12                              56
  CLUS_7                            13                              40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q21.31) MUTATED        3     59     19      7
  DEL PEAK 42(17Q21.31) WILD-TYPE    105    123     74     43
D92V6, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                             3                             105
  CLUS_2                            59                             123
  CLUS_3                            19                              74
  CLUS_4                             7                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q21.31) MUTATED       88      7      5     13
  DEL PEAK 42(17Q21.31) WILD-TYPE    100    116     88    120
D92V7, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            88                             100
  CLUS_2                             7                             116
  CLUS_3                             5                              88
  CLUS_4                            13                             120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(17Q21.31) MUTATED       72      1      6      3     18     12
  DEL PEAK 42(17Q21.31) WILD-TYPE     51     52     41     62     90     54
                                 vv
clus                              CLUS_7
  DEL PEAK 42(17Q21.31) MUTATED        1
  DEL PEAK 42(17Q21.31) WILD-TYPE     74
D92V8, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            72                              51
  CLUS_2                             1                              52
  CLUS_3                             6                              41
  CLUS_4                             3                              62
  CLUS_5                            18                              90
  CLUS_6                            12                              54
  CLUS_7                             1                              74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(17Q21.31) MUTATED       73      7      7     15      7
  DEL PEAK 42(17Q21.31) WILD-TYPE     91     73     99    118     40
D92V9, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            73                              91
  CLUS_2                             7                              73
  CLUS_3                             7                              99
  CLUS_4                            15                             118
  CLUS_5                             7                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q21.31) MUTATED       29     66     14
  DEL PEAK 42(17Q21.31) WILD-TYPE    189    106    126
D92V10, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            29                             189
  CLUS_2                            66                             106
  CLUS_3                            14                             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(17Q21.31) MUTATED       46     16     18     16
  DEL PEAK 42(17Q21.31) WILD-TYPE     70     82     74     76
D92V11, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            46                              70
  CLUS_2                            16                              82
  CLUS_3                            18                              74
  CLUS_4                            16                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(17Q21.31) MUTATED       49     21     26
  DEL PEAK 42(17Q21.31) WILD-TYPE    114    111     77
D92V12, multiclass
        clus
vv       DEL PEAK 42(17Q21.31) MUTATED DEL PEAK 42(17Q21.31) WILD-TYPE
  CLUS_1                            49                             114
  CLUS_2                            21                             111
  CLUS_3                            26                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = DEL PEAK 43(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED        1      3      1      0
  DEL PEAK 43(18Q21.2) WILD-TYPE     14     14     13      7
D93V1, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            3                             14
  CLUS_3                            1                             13
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q21.2) MUTATED        2      2      1      0      0
  DEL PEAK 43(18Q21.2) WILD-TYPE     12      7      6      7     16
D93V2, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED       87      0      2      1
  DEL PEAK 43(18Q21.2) WILD-TYPE    121    178     97     53
D93V3, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           87                            121
  CLUS_2                            0                            178
  CLUS_3                            2                             97
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q21.2) MUTATED       47     21     12
  DEL PEAK 43(18Q21.2) WILD-TYPE    107     57    181
D93V4, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           47                            107
  CLUS_2                           21                             57
  CLUS_3                           12                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q21.2) MUTATED        3      3      6     18     26      9
  DEL PEAK 43(18Q21.2) WILD-TYPE     36     78     46     38     58     59
                                vv
clus                             CLUS_7
  DEL PEAK 43(18Q21.2) MUTATED       12
  DEL PEAK 43(18Q21.2) WILD-TYPE     41
D93V5, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            3                             78
  CLUS_3                            6                             46
  CLUS_4                           18                             38
  CLUS_5                           26                             58
  CLUS_6                            9                             59
  CLUS_7                           12                             41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED        4     47     18      8
  DEL PEAK 43(18Q21.2) WILD-TYPE    104    135     75     42
D93V6, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                           47                            135
  CLUS_3                           18                             75
  CLUS_4                            8                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED       64      7     11      8
  DEL PEAK 43(18Q21.2) WILD-TYPE    124    116     82    125
D93V7, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           64                            124
  CLUS_2                            7                            116
  CLUS_3                           11                             82
  CLUS_4                            8                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q21.2) MUTATED       41      1     15      1     24      8
  DEL PEAK 43(18Q21.2) WILD-TYPE     82     52     32     64     84     58
                                vv
clus                             CLUS_7
  DEL PEAK 43(18Q21.2) MUTATED        0
  DEL PEAK 43(18Q21.2) WILD-TYPE     75
D93V8, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           41                             82
  CLUS_2                            1                             52
  CLUS_3                           15                             32
  CLUS_4                            1                             64
  CLUS_5                           24                             84
  CLUS_6                            8                             58
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q21.2) MUTATED       57      5      7     11      9
  DEL PEAK 43(18Q21.2) WILD-TYPE    107     75     99    122     38
D93V9, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           57                            107
  CLUS_2                            5                             75
  CLUS_3                            7                             99
  CLUS_4                           11                            122
  CLUS_5                            9                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q21.2) MUTATED       24     57      8
  DEL PEAK 43(18Q21.2) WILD-TYPE    194    115    132
D93V10, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           24                            194
  CLUS_2                           57                            115
  CLUS_3                            8                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q21.2) MUTATED       36      8     17     17
  DEL PEAK 43(18Q21.2) WILD-TYPE     80     90     75     75
D93V11, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           36                             80
  CLUS_2                            8                             90
  CLUS_3                           17                             75
  CLUS_4                           17                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q21.2) MUTATED       44     14     20
  DEL PEAK 43(18Q21.2) WILD-TYPE    119    118     83
D93V12, multiclass
        clus
vv       DEL PEAK 43(18Q21.2) MUTATED DEL PEAK 43(18Q21.2) WILD-TYPE
  CLUS_1                           44                            119
  CLUS_2                           14                            118
  CLUS_3                           20                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DEL PEAK 44(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q23) MUTATED        1      3      1      0
  DEL PEAK 44(18Q23) WILD-TYPE     14     14     13      7
D94V1, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                          3                           14
  CLUS_3                          1                           13
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q23) MUTATED        2      2      1      0      0
  DEL PEAK 44(18Q23) WILD-TYPE     12      7      6      7     16
D94V2, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          2                            7
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q23) MUTATED       95      1      2      0
  DEL PEAK 44(18Q23) WILD-TYPE    113    177     97     54
D94V3, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         95                          113
  CLUS_2                          1                          177
  CLUS_3                          2                           97
  CLUS_4                          0                           54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q23) MUTATED       54     20     12
  DEL PEAK 44(18Q23) WILD-TYPE    100     58    181
D94V4, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         54                          100
  CLUS_2                         20                           58
  CLUS_3                         12                          181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 44(18Q23) MUTATED        4      3      7     18     28     12     11
  DEL PEAK 44(18Q23) WILD-TYPE     35     78     45     38     56     56     42
D94V5, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                          4                           35
  CLUS_2                          3                           78
  CLUS_3                          7                           45
  CLUS_4                         18                           38
  CLUS_5                         28                           56
  CLUS_6                         12                           56
  CLUS_7                         11                           42
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q23) MUTATED        5     54     19      5
  DEL PEAK 44(18Q23) WILD-TYPE    103    128     74     45
D94V6, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                          5                          103
  CLUS_2                         54                          128
  CLUS_3                         19                           74
  CLUS_4                          5                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q23) MUTATED       70      9     10      9
  DEL PEAK 44(18Q23) WILD-TYPE    118    114     83    124
D94V7, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         70                          118
  CLUS_2                          9                          114
  CLUS_3                         10                           83
  CLUS_4                          9                          124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 44(18Q23) MUTATED       46      1     19      1     22      8      1
  DEL PEAK 44(18Q23) WILD-TYPE     77     52     28     64     86     58     74
D94V8, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         46                           77
  CLUS_2                          1                           52
  CLUS_3                         19                           28
  CLUS_4                          1                           64
  CLUS_5                         22                           86
  CLUS_6                          8                           58
  CLUS_7                          1                           74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(18Q23) MUTATED       61      6      7     12     10
  DEL PEAK 44(18Q23) WILD-TYPE    103     74     99    121     37
D94V9, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         61                          103
  CLUS_2                          6                           74
  CLUS_3                          7                           99
  CLUS_4                         12                          121
  CLUS_5                         10                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q23) MUTATED       25     62      9
  DEL PEAK 44(18Q23) WILD-TYPE    193    110    131
D94V10, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         25                          193
  CLUS_2                         62                          110
  CLUS_3                          9                          131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(18Q23) MUTATED       38      8     21     17
  DEL PEAK 44(18Q23) WILD-TYPE     78     90     71     75
D94V11, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         38                           78
  CLUS_2                          8                           90
  CLUS_3                         21                           71
  CLUS_4                         17                           75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(18Q23) MUTATED       45     15     24
  DEL PEAK 44(18Q23) WILD-TYPE    118    117     79
D94V12, multiclass
        clus
vv       DEL PEAK 44(18Q23) MUTATED DEL PEAK 44(18Q23) WILD-TYPE
  CLUS_1                         45                          118
  CLUS_2                         15                          117
  CLUS_3                         24                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = DEL PEAK 45(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED        1     11      0      0
  DEL PEAK 45(19P13.3) WILD-TYPE     14      6     14      7
D95V1, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           11                              6
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED        3      9      0      0      0
  DEL PEAK 45(19P13.3) WILD-TYPE     11      0      7      7     16
D95V2, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            9                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED      155      0      0      2
  DEL PEAK 45(19P13.3) WILD-TYPE     53    178     99     52
D95V3, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                          155                             53
  CLUS_2                            0                            178
  CLUS_3                            0                             99
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       93     37      7
  DEL PEAK 45(19P13.3) WILD-TYPE     61     41    186
D95V4, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           93                             61
  CLUS_2                           37                             41
  CLUS_3                            7                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P13.3) MUTATED        2      3      9     26     47     17
  DEL PEAK 45(19P13.3) WILD-TYPE     37     78     43     30     37     51
                                vv
clus                             CLUS_7
  DEL PEAK 45(19P13.3) MUTATED       19
  DEL PEAK 45(19P13.3) WILD-TYPE     34
D95V5, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            3                             78
  CLUS_3                            9                             43
  CLUS_4                           26                             30
  CLUS_5                           47                             37
  CLUS_6                           17                             51
  CLUS_7                           19                             34
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED        2     87     23     11
  DEL PEAK 45(19P13.3) WILD-TYPE    106     95     70     39
D95V6, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                            2                            106
  CLUS_2                           87                             95
  CLUS_3                           23                             70
  CLUS_4                           11                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED      132      5     11      8
  DEL PEAK 45(19P13.3) WILD-TYPE     56    118     82    125
D95V7, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                          132                             56
  CLUS_2                            5                            118
  CLUS_3                           11                             82
  CLUS_4                            8                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P13.3) MUTATED      105      1     20      2     21      7
  DEL PEAK 45(19P13.3) WILD-TYPE     18     52     27     63     87     59
                                vv
clus                             CLUS_7
  DEL PEAK 45(19P13.3) MUTATED        0
  DEL PEAK 45(19P13.3) WILD-TYPE     75
D95V8, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                          105                             18
  CLUS_2                            1                             52
  CLUS_3                           20                             27
  CLUS_4                            2                             63
  CLUS_5                           21                             87
  CLUS_6                            7                             59
  CLUS_7                            0                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P13.3) MUTATED      114      5     10     10     13
  DEL PEAK 45(19P13.3) WILD-TYPE     50     75     96    123     34
D95V9, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                          114                             50
  CLUS_2                            5                             75
  CLUS_3                           10                             96
  CLUS_4                           10                            123
  CLUS_5                           13                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       27    115     10
  DEL PEAK 45(19P13.3) WILD-TYPE    191     57    130
D95V10, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           27                            191
  CLUS_2                          115                             57
  CLUS_3                           10                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P13.3) MUTATED       62     11     28     31
  DEL PEAK 45(19P13.3) WILD-TYPE     54     87     64     61
D95V11, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           62                             54
  CLUS_2                           11                             87
  CLUS_3                           28                             64
  CLUS_4                           31                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P13.3) MUTATED       78     15     39
  DEL PEAK 45(19P13.3) WILD-TYPE     85    117     64
D95V12, multiclass
        clus
vv       DEL PEAK 45(19P13.3) MUTATED DEL PEAK 45(19P13.3) WILD-TYPE
  CLUS_1                           78                             85
  CLUS_2                           15                            117
  CLUS_3                           39                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = DEL PEAK 46(19P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19P12) MUTATED        1      1      0      0
  DEL PEAK 46(19P12) WILD-TYPE     14     16     14      7
D96V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 46(19P12) MUTATED"
clus
  DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 46(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19P12) MUTATED        0      1      0      1      0
  DEL PEAK 46(19P12) WILD-TYPE     14      8      7      6     16
D96V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 46(19P12) MUTATED"
clus
  DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 46(19P12) WILD-TYPE" "DEL PEAK 46(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 46(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19P12) MUTATED       55      1      0      2
  DEL PEAK 46(19P12) WILD-TYPE    153    177     99     52
D96V3, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         55                          153
  CLUS_2                          1                          177
  CLUS_3                          0                           99
  CLUS_4                          2                           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19P12) MUTATED       33     14      5
  DEL PEAK 46(19P12) WILD-TYPE    121     64    188
D96V4, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         33                          121
  CLUS_2                         14                           64
  CLUS_3                          5                          188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 46(19P12) MUTATED        2      2      5      9     19      7      3
  DEL PEAK 46(19P12) WILD-TYPE     37     79     47     47     65     61     50
D96V5, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                          2                           37
  CLUS_2                          2                           79
  CLUS_3                          5                           47
  CLUS_4                          9                           47
  CLUS_5                         19                           65
  CLUS_6                          7                           61
  CLUS_7                          3                           50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19P12) MUTATED        2     32     12      1
  DEL PEAK 46(19P12) WILD-TYPE    106    150     81     49
D96V6, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                          2                          106
  CLUS_2                         32                          150
  CLUS_3                         12                           81
  CLUS_4                          1                           49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19P12) MUTATED       42      4      6      6
  DEL PEAK 46(19P12) WILD-TYPE    146    119     87    127
D96V7, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         42                          146
  CLUS_2                          4                          119
  CLUS_3                          6                           87
  CLUS_4                          6                          127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 46(19P12) MUTATED       32      1      9      1     11      4      0
  DEL PEAK 46(19P12) WILD-TYPE     91     52     38     64     97     62     75
D96V8, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         32                           91
  CLUS_2                          1                           52
  CLUS_3                          9                           38
  CLUS_4                          1                           64
  CLUS_5                         11                           97
  CLUS_6                          4                           62
  CLUS_7                          0                           75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19P12) MUTATED       38      5      4      5      5
  DEL PEAK 46(19P12) WILD-TYPE    126     75    102    128     42
D96V9, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         38                          126
  CLUS_2                          5                           75
  CLUS_3                          4                          102
  CLUS_4                          5                          128
  CLUS_5                          5                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19P12) MUTATED       17     36      4
  DEL PEAK 46(19P12) WILD-TYPE    201    136    136
D96V10, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         17                          201
  CLUS_2                         36                          136
  CLUS_3                          4                          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19P12) MUTATED       24      6      7     13
  DEL PEAK 46(19P12) WILD-TYPE     92     92     85     79
D96V11, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         24                           92
  CLUS_2                          6                           92
  CLUS_3                          7                           85
  CLUS_4                         13                           79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19P12) MUTATED       33      6     11
  DEL PEAK 46(19P12) WILD-TYPE    130    126     92
D96V12, multiclass
        clus
vv       DEL PEAK 46(19P12) MUTATED DEL PEAK 46(19P12) WILD-TYPE
  CLUS_1                         33                          130
  CLUS_2                          6                          126
  CLUS_3                         11                           92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = DEL PEAK 47(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(19Q13.43) MUTATED        0      8      1      0
  DEL PEAK 47(19Q13.43) WILD-TYPE     15      9     13      7
D97V1, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                             0                              15
  CLUS_2                             8                               9
  CLUS_3                             1                              13
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(19Q13.43) MUTATED        1      7      1      0      0
  DEL PEAK 47(19Q13.43) WILD-TYPE     13      2      6      7     16
D97V2, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                               2
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(19Q13.43) MUTATED       65      0      1      1
  DEL PEAK 47(19Q13.43) WILD-TYPE    143    178     98     53
D97V3, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            65                             143
  CLUS_2                             0                             178
  CLUS_3                             1                              98
  CLUS_4                             1                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(19Q13.43) MUTATED       38     16      2
  DEL PEAK 47(19Q13.43) WILD-TYPE    116     62    191
D97V4, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            38                             116
  CLUS_2                            16                              62
  CLUS_3                             2                             191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(19Q13.43) MUTATED        1      0      4     11     18      6
  DEL PEAK 47(19Q13.43) WILD-TYPE     38     81     48     45     66     62
                                 vv
clus                              CLUS_7
  DEL PEAK 47(19Q13.43) MUTATED       10
  DEL PEAK 47(19Q13.43) WILD-TYPE     43
D97V5, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                             1                              38
  CLUS_2                             0                              81
  CLUS_3                             4                              48
  CLUS_4                            11                              45
  CLUS_5                            18                              66
  CLUS_6                             6                              62
  CLUS_7                            10                              43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(19Q13.43) MUTATED        1     34     11      4
  DEL PEAK 47(19Q13.43) WILD-TYPE    107    148     82     46
D97V6, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                             1                             107
  CLUS_2                            34                             148
  CLUS_3                            11                              82
  CLUS_4                             4                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(19Q13.43) MUTATED       54      3      6      3
  DEL PEAK 47(19Q13.43) WILD-TYPE    134    120     87    130
D97V7, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            54                             134
  CLUS_2                             3                             120
  CLUS_3                             6                              87
  CLUS_4                             3                             130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(19Q13.43) MUTATED       44      1      8      0     11      2
  DEL PEAK 47(19Q13.43) WILD-TYPE     79     52     39     65     97     64
                                 vv
clus                              CLUS_7
  DEL PEAK 47(19Q13.43) MUTATED        0
  DEL PEAK 47(19Q13.43) WILD-TYPE     75
D97V8, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            44                              79
  CLUS_2                             1                              52
  CLUS_3                             8                              39
  CLUS_4                             0                              65
  CLUS_5                            11                              97
  CLUS_6                             2                              64
  CLUS_7                             0                              75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(19Q13.43) MUTATED       47      3      5      4      4
  DEL PEAK 47(19Q13.43) WILD-TYPE    117     77    101    129     43
D97V9, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            47                             117
  CLUS_2                             3                              77
  CLUS_3                             5                             101
  CLUS_4                             4                             129
  CLUS_5                             4                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(19Q13.43) MUTATED       11     50      2
  DEL PEAK 47(19Q13.43) WILD-TYPE    207    122    138
D97V10, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            11                             207
  CLUS_2                            50                             122
  CLUS_3                             2                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(19Q13.43) MUTATED       22      4     14     16
  DEL PEAK 47(19Q13.43) WILD-TYPE     94     94     78     76
D97V11, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            22                              94
  CLUS_2                             4                              94
  CLUS_3                            14                              78
  CLUS_4                            16                              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(19Q13.43) MUTATED       31      4     21
  DEL PEAK 47(19Q13.43) WILD-TYPE    132    128     82
D97V12, multiclass
        clus
vv       DEL PEAK 47(19Q13.43) MUTATED DEL PEAK 47(19Q13.43) WILD-TYPE
  CLUS_1                            31                             132
  CLUS_2                             4                             128
  CLUS_3                            21                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = DEL PEAK 48(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(20P12.1) MUTATED        1      1      0      0
  DEL PEAK 48(20P12.1) WILD-TYPE     14     16     14      7
D98V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 48(20P12.1) MUTATED"
clus
  DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G5                     TCGA-A5-A0GA 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 48(20P12.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(20P12.1) MUTATED        1      1      0      0      0
  DEL PEAK 48(20P12.1) WILD-TYPE     13      8      7      7     16
D98V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 48(20P12.1) MUTATED"
clus
  DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G5                     TCGA-A5-A0GA 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 48(20P12.1) WILD-TYPE" "DEL PEAK 48(20P12.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 48(20P12.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(20P12.1) MUTATED       28      2      2      3
  DEL PEAK 48(20P12.1) WILD-TYPE    180    176     97     51
D98V3, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           28                            180
  CLUS_2                            2                            176
  CLUS_3                            2                             97
  CLUS_4                            3                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(20P12.1) MUTATED       14      8      6
  DEL PEAK 48(20P12.1) WILD-TYPE    140     70    187
D98V4, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           14                            140
  CLUS_2                            8                             70
  CLUS_3                            6                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(20P12.1) MUTATED        2      2      3      6      7      4
  DEL PEAK 48(20P12.1) WILD-TYPE     37     79     49     50     77     64
                                vv
clus                             CLUS_7
  DEL PEAK 48(20P12.1) MUTATED        5
  DEL PEAK 48(20P12.1) WILD-TYPE     48
D98V5, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            2                             79
  CLUS_3                            3                             49
  CLUS_4                            6                             50
  CLUS_5                            7                             77
  CLUS_6                            4                             64
  CLUS_7                            5                             48
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(20P12.1) MUTATED        5     21      1      2
  DEL PEAK 48(20P12.1) WILD-TYPE    103    161     92     48
D98V6, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                            5                            103
  CLUS_2                           21                            161
  CLUS_3                            1                             92
  CLUS_4                            2                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(20P12.1) MUTATED       22      4      3      6
  DEL PEAK 48(20P12.1) WILD-TYPE    166    119     90    127
D98V7, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           22                            166
  CLUS_2                            4                            119
  CLUS_3                            3                             90
  CLUS_4                            6                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(20P12.1) MUTATED       17      3      5      0      6      2
  DEL PEAK 48(20P12.1) WILD-TYPE    106     50     42     65    102     64
                                vv
clus                             CLUS_7
  DEL PEAK 48(20P12.1) MUTATED        2
  DEL PEAK 48(20P12.1) WILD-TYPE     73
D98V8, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           17                            106
  CLUS_2                            3                             50
  CLUS_3                            5                             42
  CLUS_4                            0                             65
  CLUS_5                            6                            102
  CLUS_6                            2                             64
  CLUS_7                            2                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(20P12.1) MUTATED       23      4      2      3      2
  DEL PEAK 48(20P12.1) WILD-TYPE    141     76    104    130     45
D98V9, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           23                            141
  CLUS_2                            4                             76
  CLUS_3                            2                            104
  CLUS_4                            3                            130
  CLUS_5                            2                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(20P12.1) MUTATED        8     20      6
  DEL PEAK 48(20P12.1) WILD-TYPE    210    152    134
D98V10, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                            8                            210
  CLUS_2                           20                            152
  CLUS_3                            6                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(20P12.1) MUTATED       15      3      6      5
  DEL PEAK 48(20P12.1) WILD-TYPE    101     95     86     87
D98V11, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           15                            101
  CLUS_2                            3                             95
  CLUS_3                            6                             86
  CLUS_4                            5                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(20P12.1) MUTATED       14      6      9
  DEL PEAK 48(20P12.1) WILD-TYPE    149    126     94
D98V12, multiclass
        clus
vv       DEL PEAK 48(20P12.1) MUTATED DEL PEAK 48(20P12.1) WILD-TYPE
  CLUS_1                           14                            149
  CLUS_2                            6                            126
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = DEL PEAK 49(22Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q12.1) MUTATED        0      6      0      0
  DEL PEAK 49(22Q12.1) WILD-TYPE     15     11     14      7
D99V1, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                            6                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q12.1) MUTATED        2      4      0      0      0
  DEL PEAK 49(22Q12.1) WILD-TYPE     12      5      7      7     16
D99V2, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q12.1) MUTATED       90      2      2      1
  DEL PEAK 49(22Q12.1) WILD-TYPE    118    176     97     53
D99V3, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           90                            118
  CLUS_2                            2                            176
  CLUS_3                            2                             97
  CLUS_4                            1                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q12.1) MUTATED       47     20     17
  DEL PEAK 49(22Q12.1) WILD-TYPE    107     58    176
D99V4, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           47                            107
  CLUS_2                           20                             58
  CLUS_3                           17                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q12.1) MUTATED        3      5      7     16     24      9
  DEL PEAK 49(22Q12.1) WILD-TYPE     36     76     45     40     60     59
                                vv
clus                             CLUS_7
  DEL PEAK 49(22Q12.1) MUTATED       10
  DEL PEAK 49(22Q12.1) WILD-TYPE     43
D99V5, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            5                             76
  CLUS_3                            7                             45
  CLUS_4                           16                             40
  CLUS_5                           24                             60
  CLUS_6                            9                             59
  CLUS_7                           10                             43
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q12.1) MUTATED        3     45     19      7
  DEL PEAK 49(22Q12.1) WILD-TYPE    105    137     74     43
D99V6, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                            3                            105
  CLUS_2                           45                            137
  CLUS_3                           19                             74
  CLUS_4                            7                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q12.1) MUTATED       66      9      6     14
  DEL PEAK 49(22Q12.1) WILD-TYPE    122    114     87    119
D99V7, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           66                            122
  CLUS_2                            9                            114
  CLUS_3                            6                             87
  CLUS_4                           14                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q12.1) MUTATED       49      1      4      1     24     15
  DEL PEAK 49(22Q12.1) WILD-TYPE     74     52     43     64     84     51
                                vv
clus                             CLUS_7
  DEL PEAK 49(22Q12.1) MUTATED        1
  DEL PEAK 49(22Q12.1) WILD-TYPE     74
D99V8, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           49                             74
  CLUS_2                            1                             52
  CLUS_3                            4                             43
  CLUS_4                            1                             64
  CLUS_5                           24                             84
  CLUS_6                           15                             51
  CLUS_7                            1                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q12.1) MUTATED       61      6      2     18      6
  DEL PEAK 49(22Q12.1) WILD-TYPE    103     74    104    115     41
D99V9, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           61                            103
  CLUS_2                            6                             74
  CLUS_3                            2                            104
  CLUS_4                           18                            115
  CLUS_5                            6                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q12.1) MUTATED       29     49     15
  DEL PEAK 49(22Q12.1) WILD-TYPE    189    123    125
D99V10, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           29                            189
  CLUS_2                           49                            123
  CLUS_3                           15                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q12.1) MUTATED       34     16     19     10
  DEL PEAK 49(22Q12.1) WILD-TYPE     82     82     73     82
D99V11, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                           16                             82
  CLUS_3                           19                             73
  CLUS_4                           10                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q12.1) MUTATED       40     19     20
  DEL PEAK 49(22Q12.1) WILD-TYPE    123    113     83
D99V12, multiclass
        clus
vv       DEL PEAK 49(22Q12.1) MUTATED DEL PEAK 49(22Q12.1) WILD-TYPE
  CLUS_1                           40                            123
  CLUS_2                           19                            113
  CLUS_3                           20                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = DEL PEAK 50(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.32) MUTATED        0      9      0      0
  DEL PEAK 50(22Q13.32) WILD-TYPE     15      8     14      7
D100V1, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                             0                              15
  CLUS_2                             9                               8
  CLUS_3                             0                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.32) MUTATED        2      7      0      0      0
  DEL PEAK 50(22Q13.32) WILD-TYPE     12      2      7      7     16
D100V2, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             7                               2
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.32) MUTATED      133      3      3      1
  DEL PEAK 50(22Q13.32) WILD-TYPE     75    175     96     53
D100V3, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                           133                              75
  CLUS_2                             3                             175
  CLUS_3                             3                              96
  CLUS_4                             1                              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.32) MUTATED       72     32     20
  DEL PEAK 50(22Q13.32) WILD-TYPE     82     46    173
D100V4, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            72                              82
  CLUS_2                            32                              46
  CLUS_3                            20                             173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(22Q13.32) MUTATED        3      5      8     21     41     16
  DEL PEAK 50(22Q13.32) WILD-TYPE     36     76     44     35     43     52
                                 vv
clus                              CLUS_7
  DEL PEAK 50(22Q13.32) MUTATED       18
  DEL PEAK 50(22Q13.32) WILD-TYPE     35
D100V5, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                             3                              36
  CLUS_2                             5                              76
  CLUS_3                             8                              44
  CLUS_4                            21                              35
  CLUS_5                            41                              43
  CLUS_6                            16                              52
  CLUS_7                            18                              35
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.32) MUTATED        4     72     24     12
  DEL PEAK 50(22Q13.32) WILD-TYPE    104    110     69     38
D100V6, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                             4                             104
  CLUS_2                            72                             110
  CLUS_3                            24                              69
  CLUS_4                            12                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.32) MUTATED      104     10      9     16
  DEL PEAK 50(22Q13.32) WILD-TYPE     84    113     84    117
D100V7, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                           104                              84
  CLUS_2                            10                             113
  CLUS_3                             9                              84
  CLUS_4                            16                             117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(22Q13.32) MUTATED       83      1     10      2     26     14
  DEL PEAK 50(22Q13.32) WILD-TYPE     40     52     37     63     82     52
                                 vv
clus                              CLUS_7
  DEL PEAK 50(22Q13.32) MUTATED        3
  DEL PEAK 50(22Q13.32) WILD-TYPE     72
D100V8, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            83                              40
  CLUS_2                             1                              52
  CLUS_3                            10                              37
  CLUS_4                             2                              63
  CLUS_5                            26                              82
  CLUS_6                            14                              52
  CLUS_7                             3                              72
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(22Q13.32) MUTATED       93      7      7     19     10
  DEL PEAK 50(22Q13.32) WILD-TYPE     71     73     99    114     37
D100V9, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            93                              71
  CLUS_2                             7                              73
  CLUS_3                             7                              99
  CLUS_4                            19                             114
  CLUS_5                            10                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.32) MUTATED       34     86     16
  DEL PEAK 50(22Q13.32) WILD-TYPE    184     86    124
D100V10, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            34                             184
  CLUS_2                            86                              86
  CLUS_3                            16                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(22Q13.32) MUTATED       53     18     24     23
  DEL PEAK 50(22Q13.32) WILD-TYPE     63     80     68     69
D100V11, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            53                              63
  CLUS_2                            18                              80
  CLUS_3                            24                              68
  CLUS_4                            23                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(22Q13.32) MUTATED       65     20     33
  DEL PEAK 50(22Q13.32) WILD-TYPE     98    112     70
D100V12, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            65                              98
  CLUS_2                            20                             112
  CLUS_3                            33                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = DEL PEAK 51(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED        0      7      0      0
  DEL PEAK 51(XP21.1) WILD-TYPE     15     10     14      7
D101V1, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           7                            10
  CLUS_3                           0                            14
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP21.1) MUTATED        2      5      0      0      0
  DEL PEAK 51(XP21.1) WILD-TYPE     12      4      7      7     16
D101V2, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       85      2      0      1
  DEL PEAK 51(XP21.1) WILD-TYPE    123    176     99     53
D101V3, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          85                           123
  CLUS_2                           2                           176
  CLUS_3                           0                            99
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       46     18     10
  DEL PEAK 51(XP21.1) WILD-TYPE    108     60    183
D101V4, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          46                           108
  CLUS_2                          18                            60
  CLUS_3                          10                           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP21.1) MUTATED        2      2      6     14     30      8
  DEL PEAK 51(XP21.1) WILD-TYPE     37     79     46     42     54     60
                               vv
clus                            CLUS_7
  DEL PEAK 51(XP21.1) MUTATED       12
  DEL PEAK 51(XP21.1) WILD-TYPE     41
D101V5, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           2                            79
  CLUS_3                           6                            46
  CLUS_4                          14                            42
  CLUS_5                          30                            54
  CLUS_6                           8                            60
  CLUS_7                          12                            41
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED        4     51     13      6
  DEL PEAK 51(XP21.1) WILD-TYPE    104    131     80     44
D101V6, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                           4                           104
  CLUS_2                          51                           131
  CLUS_3                          13                            80
  CLUS_4                           6                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       70      6      5      6
  DEL PEAK 51(XP21.1) WILD-TYPE    118    117     88    127
D101V7, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          70                           118
  CLUS_2                           6                           117
  CLUS_3                           5                            88
  CLUS_4                           6                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 51(XP21.1) MUTATED       56      2     10      1     14      4
  DEL PEAK 51(XP21.1) WILD-TYPE     67     51     37     64     94     62
                               vv
clus                            CLUS_7
  DEL PEAK 51(XP21.1) MUTATED        0
  DEL PEAK 51(XP21.1) WILD-TYPE     75
D101V8, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          56                            67
  CLUS_2                           2                            51
  CLUS_3                          10                            37
  CLUS_4                           1                            64
  CLUS_5                          14                            94
  CLUS_6                           4                            62
  CLUS_7                           0                            75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 51(XP21.1) MUTATED       61      4      6      8      6
  DEL PEAK 51(XP21.1) WILD-TYPE    103     76    100    125     41
D101V9, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          61                           103
  CLUS_2                           4                            76
  CLUS_3                           6                           100
  CLUS_4                           8                           125
  CLUS_5                           6                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       22     58      5
  DEL PEAK 51(XP21.1) WILD-TYPE    196    114    135
D101V10, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          22                           196
  CLUS_2                          58                           114
  CLUS_3                           5                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 51(XP21.1) MUTATED       39      9     15     11
  DEL PEAK 51(XP21.1) WILD-TYPE     77     89     77     81
D101V11, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          39                            77
  CLUS_2                           9                            89
  CLUS_3                          15                            77
  CLUS_4                          11                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 51(XP21.1) MUTATED       43      8     23
  DEL PEAK 51(XP21.1) WILD-TYPE    120    124     80
D101V12, multiclass
        clus
vv       DEL PEAK 51(XP21.1) MUTATED DEL PEAK 51(XP21.1) WILD-TYPE
  CLUS_1                          43                           120
  CLUS_2                           8                           124
  CLUS_3                          23                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
