		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (75%)	14	0.67971	0.841	0.43061	0.682	0.077239	0.397	0.48657	0.704	0.45876	0.689	0.2945	0.612	0.13004	0.451	0.18672	0.515	0.058939	0.39	0.26699	0.598
amp_2p14	28 (50%)	28	0.38398	0.652	0.087099	0.397	0.94678	0.983	0.48899	0.704	0.01367	0.292	0.079969	0.397	0.31357	0.613	0.24803	0.58	0.25227	0.587	0.36174	0.635
amp_2q13	29 (52%)	27	0.43227	0.682	0.097229	0.417	0.50509	0.711	0.48825	0.704	0.0077299	0.232	0.31619	0.614	1	1	0.66496	0.828	0.72122	0.865	0.72807	0.867
amp_3p25.1	20 (36%)	36	0.01034	0.239	0.7538	0.877	0.76173	0.877	0.054019	0.39	0.31982	0.615	0.11346	0.446	0.04227	0.379	0.065249	0.39	0.22895	0.562	0.067129	0.39
amp_3q26.2	37 (66%)	19	0.00051999	0.104	0.0056899	0.232	0.44976	0.689	0.12873	0.451	0.26236	0.598	0.15844	0.478	1	1	0.24243	0.573	0.059359	0.39	0.18443	0.513
amp_4p16.3	25 (45%)	31	0.0019	0.163	0.45644	0.689	0.7095	0.862	0.01001	0.239	0.16255	0.48	0.1872	0.515	0.73821	0.872	0.28913	0.61	0.84472	0.927	0.53187	0.729
amp_5p13.2	26 (46%)	30	0.091949	0.4	0.5445	0.737	0.23253	0.562	0.3082	0.613	0.12653	0.45	0.055629	0.39	0.26355	0.598	0.04585	0.387	0.32674	0.615	0.17524	0.496
amp_6p24.2	37 (66%)	19	0.4493	0.689	0.98023	1	0.98787	1	0.32609	0.615	0.83031	0.918	0.35565	0.63	0.72336	0.865	0.49698	0.709	0.76875	0.877	0.76761	0.877
amp_8p11.21	33 (59%)	23	0.35061	0.629	0.72727	0.867	0.14993	0.471	0.091979	0.4	0.43544	0.682	0.55669	0.749	0.68685	0.846	1	1	0.64126	0.81	0.60103	0.781
amp_8q11.23	38 (68%)	18	0.060969	0.39	0.082279	0.397	0.31168	0.613	0.20135	0.533	0.0471	0.387	0.16633	0.482	1	1	0.92229	0.975	0.73693	0.872	0.85678	0.933
amp_8q24.21	42 (75%)	14	0.01409	0.292	0.75269	0.877	0.46369	0.689	0.95213	0.987	0.21074	0.54	0.33675	0.626	0.050399	0.39	0.03258	0.377	0.059849	0.39	0.01503	0.301
amp_8q24.21	40 (71%)	16	0.0069099	0.232	0.44607	0.689	0.32543	0.615	0.64513	0.813	0.0089999	0.239	0.11774	0.446	0.061119	0.39	0.063309	0.39	0.086139	0.397	0.02215	0.319
amp_10q22.2	26 (46%)	30	0.20954	0.54	0.73194	0.869	0.3031	0.613	0.34418	0.629	0.93153	0.976	0.92515	0.976	0.35214	0.629	0.73948	0.872	0.35288	0.629	0.42789	0.681
amp_11q13.1	19 (34%)	37	0.323	0.615	0.78812	0.886	0.42236	0.677	0.2695	0.598	0.10898	0.446	0.30363	0.613	0.58232	0.77	1	1	0.51401	0.721	0.97521	1
amp_12q12	22 (39%)	34	0.23317	0.562	0.23176	0.562	0.59705	0.78	0.078629	0.397	0.31372	0.613	0.40879	0.677	0.50122	0.71	1	1	0.52895	0.729	0.95384	0.987
amp_12q15	17 (30%)	39	0.52964	0.729	0.66136	0.826	0.8312	0.918	0.70788	0.862	0.12201	0.446	0.69847	0.855	0.49708	0.709	0.16433	0.482	0.57081	0.758	0.23097	0.562
amp_13q31.3	25 (45%)	31	0.48612	0.704	0.48144	0.703	0.22755	0.562	0.38521	0.652	0.23035	0.562	0.11634	0.446	0.0071599	0.232	0.03706	0.379	0.02462	0.32	0.053399	0.39
amp_16p11.2	20 (36%)	36	0.01701	0.309	0.075479	0.397	0.0099399	0.239	0.066699	0.39	0.76603	0.877	0.072739	0.397	0.77573	0.878	0.41105	0.677	0.58452	0.771	0.20913	0.54
amp_17q12	27 (48%)	29	1	1	0.17189	0.493	0.93412	0.976	0.76368	0.877	0.32171	0.615	0.46132	0.689	0.13472	0.458	0.78304	0.883	0.49843	0.709	1	1
amp_17q25.1	32 (57%)	24	0.35326	0.629	0.12287	0.447	0.85238	0.931	0.7235	0.865	0.59997	0.781	0.30726	0.613	0.60874	0.787	0.71932	0.865	0.27776	0.602	0.66013	0.826
amp_19p13.2	19 (34%)	37	0.087419	0.397	0.35048	0.629	0.41722	0.677	0.66257	0.826	0.73309	0.869	0.32348	0.615	0.19965	0.533	0.2763	0.601	0.061059	0.39	0.27004	0.598
amp_19q12	45 (80%)	11	0.00027	0.104	0.00037	0.104	0.18471	0.513	0.24828	0.58	0.51824	0.725	0.01998	0.319	0.45676	0.689	0.5017	0.71	0.2971	0.612	0.43324	0.682
amp_20q11.21	48 (86%)	8	0.0065599	0.232	0.096529	0.417	0.1133	0.446	0.41462	0.677	0.46359	0.689	0.42298	0.677	0.081669	0.397	0.14021	0.458	0.27462	0.6	0.27477	0.6
amp_20q11.21	48 (86%)	8	0.086099	0.397	0.070399	0.395	0.0468	0.387	0.41574	0.677	0.16204	0.48	0.31717	0.614	0.15892	0.478	0.34985	0.629	0.27318	0.6	0.55808	0.749
amp_xp11.21	28 (50%)	28	0.1424	0.462	0.30782	0.613	0.18023	0.508	0.15573	0.478	0.2425	0.573	0.29903	0.612	0.03192	0.377	0.10129	0.427	0.49811	0.709	0.065339	0.39
del_1p36.21	19 (34%)	37	0.18829	0.516	0.063799	0.39	0.77502	0.878	0.89637	0.959	0.59803	0.78	0.081579	0.397	0.051339	0.39	0.02422	0.32	0.28833	0.61	0.058649	0.39
del_2q22.1	11 (20%)	45	0.29076	0.61	0.33315	0.621	0.75533	0.877	0.47273	0.695	0.17418	0.495	0.16784	0.484	0.01837	0.319	0.55384	0.747	0.45893	0.689	0.91931	0.975
del_3p14.2	37 (66%)	19	0.41924	0.677	0.56247	0.753	0.70159	0.857	0.76883	0.877	0.5034	0.711	0.47238	0.695	1	1	0.76886	0.877	0.36025	0.634	0.90113	0.959
del_3q13.31	22 (39%)	34	0.19231	0.524	0.52115	0.726	0.21748	0.555	0.12129	0.446	0.64012	0.81	0.066579	0.39	0.49868	0.709	0.45569	0.689	0.87574	0.947	0.82478	0.915
del_4q22.1	37 (66%)	19	0.03265	0.377	0.067499	0.39	0.13831	0.458	0.23781	0.571	0.11861	0.446	0.15374	0.475	0.0203	0.319	0.12556	0.45	0.0073199	0.232	0.057019	0.39
del_4q34.3	37 (66%)	19	0.03787	0.379	0.02283	0.319	0.32815	0.615	0.13486	0.458	0.04128	0.379	0.04087	0.379	0.02996	0.367	0.20111	0.533	0.0068799	0.232	0.12528	0.45
del_5q12.1	26 (46%)	30	0.20733	0.539	0.0051599	0.232	0.59389	0.778	0.15923	0.478	0.62957	0.804	0.45193	0.689	0.94216	0.98	0.29679	0.612	0.56576	0.756	0.44514	0.689
del_6q26	10 (18%)	46	0.12965	0.451	0.96346	0.995	0.04974	0.39	0.080729	0.397	0.13886	0.458	0.69707	0.855	1	1	0.29836	0.612	0.17349	0.495	0.31446	0.613
del_7q11.22	12 (21%)	44	0.54239	0.736	0.80002	0.897	0.71805	0.865	0.72108	0.865	0.8403	0.923	0.83614	0.922	0.83965	0.923	0.53146	0.729	0.064659	0.39	0.751	0.877
del_7q36.2	20 (36%)	36	0.28955	0.61	0.26823	0.598	0.72349	0.865	0.5209	0.726	0.42159	0.677	0.27493	0.6	0.090349	0.4	0.04431	0.385	0.46646	0.689	0.081579	0.397
del_8p21.3	32 (57%)	24	0.03624	0.379	0.61857	0.796	0.48925	0.704	0.28203	0.604	0.34591	0.629	0.3305	0.618	0.8848	0.953	0.28405	0.607	0.4021	0.67	0.53688	0.731
del_9p23	34 (61%)	22	0.20184	0.533	0.67007	0.832	0.0050199	0.232	0.01565	0.303	0.31006	0.613	0.32451	0.615	0.82491	0.915	0.42579	0.679	0.7692	0.877	0.12122	0.446
del_9q21.13	39 (70%)	17	0.03659	0.379	0.57151	0.758	0.7704	0.877	0.45186	0.689	0.45994	0.689	0.25736	0.592	0.75668	0.877	0.32161	0.615	0.4032	0.67	0.39914	0.667
del_9q33.3	39 (70%)	17	0.46211	0.689	0.80107	0.897	0.081579	0.397	0.041	0.379	0.22666	0.562	0.13921	0.458	0.6464	0.813	0.11307	0.446	0.37796	0.648	0.25644	0.592
del_10q23.31	20 (36%)	36	0.15917	0.478	0.1479	0.467	0.92731	0.976	0.9802	1	0.37462	0.648	0.24235	0.573	0.87917	0.949	0.85224	0.931	0.5724	0.758	0.82528	0.915
del_11q14.1	26 (46%)	30	0.04907	0.39	0.63781	0.809	0.16122	0.48	0.22831	0.562	0.8207	0.915	0.92296	0.975	0.37677	0.648	0.26488	0.598	0.19923	0.533	0.075069	0.397
del_11q23.2	26 (46%)	30	0.43703	0.683	0.93407	0.976	0.61272	0.791	0.22527	0.562	0.15093	0.472	0.87053	0.943	0.51394	0.721	0.86276	0.938	0.084419	0.397	0.35714	0.63
del_12q23.1	20 (36%)	36	0.63783	0.809	0.9427	0.98	0.1215	0.446	0.062909	0.39	0.62881	0.804	0.75051	0.877	1	1	0.33792	0.626	0.62158	0.797	0.5451	0.737
del_12q24.31	20 (36%)	36	0.60238	0.781	0.75562	0.877	0.02343	0.319	0.00166	0.163	0.19703	0.533	0.25634	0.592	0.77488	0.878	0.88844	0.954	0.23281	0.562	0.93108	0.976
del_13q12.11	30 (54%)	26	0.16452	0.482	0.14489	0.467	0.43461	0.682	0.069189	0.393	0.15338	0.475	0.20603	0.539	0.35071	0.629	0.02559	0.32	0.1268	0.45	0.061889	0.39
del_13q14.2	32 (57%)	24	0.29624	0.612	0.04014	0.379	0.22738	0.562	0.41375	0.677	0.03563	0.379	0.02041	0.319	0.30316	0.613	0.15751	0.478	0.086779	0.397	0.19343	0.525
del_14q21.1	28 (50%)	28	0.78806	0.886	0.11525	0.446	0.59164	0.777	0.1319	0.455	0.067599	0.39	0.054549	0.39	0.31307	0.613	0.3811	0.651	0.089019	0.399	0.36858	0.641
del_15q15.1	43 (77%)	13	0.16556	0.482	0.02275	0.319	0.44677	0.689	0.03955	0.379	0.39817	0.667	0.77064	0.877	0.071169	0.395	0.34733	0.629	0.1155	0.446	0.20649	0.539
del_16p13.3	33 (59%)	23	0.42057	0.677	0.63111	0.804	0.70804	0.862	0.26292	0.598	0.36635	0.639	0.23014	0.562	0.01631	0.306	0.38846	0.655	0.67852	0.841	0.71617	0.865
del_16q23.1	39 (70%)	17	0.20658	0.539	0.13963	0.458	0.46285	0.689	0.2793	0.603	0.68155	0.841	0.3934	0.661	0.30047	0.613	0.81414	0.91	0.93491	0.976	0.6212	0.797
del_17p13.1	42 (75%)	14	0.28572	0.608	0.04422	0.385	0.12987	0.451	0.23896	0.571	0.04688	0.387	0.42338	0.677	0.1081	0.446	0.18162	0.509	0.00487	0.232	0.083719	0.397
del_17q21.31	27 (48%)	29	0.36352	0.636	0.063059	0.39	0.52463	0.729	0.091449	0.4	0.29681	0.612	0.34743	0.629	0.31407	0.613	0.084999	0.397	0.056449	0.39	0.14059	0.458
del_18q22.2	26 (46%)	30	0.14742	0.467	0.52656	0.729	0.43566	0.682	0.53731	0.731	0.45754	0.689	0.35718	0.63	0.0064999	0.232	0.077129	0.397	0.0093399	0.239	0.02531	0.32
del_19p13.3	47 (84%)	9	0.13798	0.458	0.04166	0.379	0.42165	0.677	0.12124	0.446	0.12046	0.446	0.37789	0.648	0.081699	0.397	0.084569	0.397	0.0401	0.379	0.11383	0.446
del_19p13.3	44 (79%)	12	0.10052	0.427	0.1025	0.427	0.13748	0.458	0.10253	0.427	0.0073699	0.232	0.088649	0.399	0.00285	0.214	0.0092299	0.239	0.00141	0.163	0.02151	0.319
del_19q13.33	17 (30%)	39	0.11353	0.446	0.02308	0.319	0.24654	0.58	0.063609	0.39	0.00182	0.163	0.03535	0.379	0.28122	0.604	0.03821	0.379	0.14699	0.467	0.01261	0.28
del_20p12.1	9 (16%)	47	0.53412	0.73	0.69706	0.855	0.074699	0.397	0.02036	0.319	0.42004	0.677	0.52766	0.729	0.26898	0.598	0.34237	0.629	0.76568	0.877	0.4658	0.689
del_22q13.31	40 (71%)	16	0.48504	0.704	0.37157	0.644	0.11454	0.446	0.30712	0.613	0.48065	0.703	0.45798	0.689	1	1	0.35143	0.629	0.97411	1	0.58774	0.773
del_xp21.1	18 (32%)	38	0.38347	0.652	0.6594	0.826	0.91235	0.969	0.89502	0.959	0.88594	0.953	0.86795	0.942	1	1	1	1	0.85375	0.931	0.9008	0.959
del_xq25	23 (41%)	33	0.78301	0.883	0.21903	0.557	0.26499	0.598	0.069449	0.393	0.14684	0.467	0.89815	0.959	0.48163	0.703	0.56708	0.756	0.11993	0.446	0.38593	0.652
