[1] "ofn"       "-oTUCS-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCS-TP/22541488/UCS-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/22533741/transformed.cor.cli.txt"

nPatients in clinical file=57, in cluster file=56, common to both=56
[1] 60 56
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                          14 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                          14 
[1] "AMP PEAK  2(2P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                         28                          28 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                         28                          28 
[1] "AMP PEAK  3(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                         29                          27 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                         29                          27 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           20                            36 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           20                            36 
[1] "AMP PEAK  5(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           37                            19 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           37                            19 
[1] "AMP PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           25                            31 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           25                            31 
[1] "AMP PEAK  7(5P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                           26                            30 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                           26                            30 
[1] "AMP PEAK  8(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           37                            19 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           37                            19 
[1] "AMP PEAK  9(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                            33                             23 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                            33                             23 
[1] "AMP PEAK 10(8Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                            38                             18 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                            38                             18 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            42                             14 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            42                             14 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            40                             16 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            40                             16 
[1] "AMP PEAK 13(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                            26                             30 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                            26                             30 
[1] "AMP PEAK 14(11Q13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                            19                             37 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                            19                             37 
[1] "AMP PEAK 15(12Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                          22                           34 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                          22                           34 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          17                           39 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          17                           39 
[1] "AMP PEAK 17(13Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            25                             31 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            25                             31 
[1] "AMP PEAK 18(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            20                             36 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            20                             36 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          27                           29 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          27                           29 
[1] "AMP PEAK 20(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            32                             24 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            32                             24 
[1] "AMP PEAK 21(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            19                             37 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            19                             37 
[1] "AMP PEAK 22(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                          45                           11 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                          45                           11 
[1] "AMP PEAK 23(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             48                               8 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             48                               8 
[1] "AMP PEAK 24(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE 
                             48                               8 
  AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE 
                             48                               8 
[1] "AMP PEAK 25(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                            28                             28 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                            28                             28 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            19                             37 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            19                             37 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           11                            45 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           11                            45 
[1] "DEL PEAK  3(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE 
                           37                            19 
  DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE 
                           37                            19 
[1] "DEL PEAK  4(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE 
                            22                             34 
  DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE 
                            22                             34 
[1] "DEL PEAK  5(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           37                            19 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           37                            19 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           37                            19 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           37                            19 
[1] "DEL PEAK  7(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE 
                           26                            30 
  DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE 
                           26                            30 
[1] "DEL PEAK  8(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         10                          46 
  DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE 
                         10                          46 
[1] "DEL PEAK  9(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE 
                            12                             44 
  DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE 
                            12                             44 
[1] "DEL PEAK 10(7Q36.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE 
                           20                            36 
  DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE 
                           20                            36 
[1] "DEL PEAK 11(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                           32                            24 
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                           32                            24 
[1] "DEL PEAK 12(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE 
                         34                          22 
  DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE 
                         34                          22 
[1] "DEL PEAK 13(9Q21.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE 
                            39                             17 
  DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE 
                            39                             17 
[1] "DEL PEAK 14(9Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE 
                           39                            17 
  DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE 
                           39                            17 
[1] "DEL PEAK 15(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             20                              36 
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             20                              36 
[1] "DEL PEAK 16(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE 
                            26                             30 
  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE 
                            26                             30 
[1] "DEL PEAK 17(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE 
                            26                             30 
  DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE 
                            26                             30 
[1] "DEL PEAK 18(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE 
                            20                             36 
  DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE 
                            20                             36 
[1] "DEL PEAK 19(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE 
                             20                              36 
  DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE 
                             20                              36 
[1] "DEL PEAK 20(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE 
                             30                              26 
  DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE 
                             30                              26 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                            32                             24 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                            32                             24 
[1] "DEL PEAK 22(14Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE 
                            28                             28 
  DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE 
                            28                             28 
[1] "DEL PEAK 23(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE 
                            43                             13 
  DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE 
                            43                             13 
[1] "DEL PEAK 24(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE 
                            33                             23 
  DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE 
                            33                             23 
[1] "DEL PEAK 25(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                            39                             17 
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                            39                             17 
[1] "DEL PEAK 26(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE 
                            42                             14 
  DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE 
                            42                             14 
[1] "DEL PEAK 27(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE 
                             27                              29 
  DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE 
                             27                              29 
[1] "DEL PEAK 28(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE 
                            26                             30 
  DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE 
                            26                             30 
[1] "DEL PEAK 29(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            47                              9 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                            47                              9 
[1] "DEL PEAK 30(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            44                             12 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            44                             12 
[1] "DEL PEAK 31(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE 
                             17                              39 
  DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE 
                             17                              39 
[1] "DEL PEAK 32(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                             9                             47 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                             9                             47 
[1] "DEL PEAK 33(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE 
                             40                              16 
  DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE 
                             40                              16 
[1] "DEL PEAK 34(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE 
                           18                            38 
  DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE 
                           18                            38 
[1] "DEL PEAK 35(XQ25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE 
                         23                          33 
  DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE 
                         23                          33 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 56 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 56 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       17     15     10
  AMP PEAK  1(1Q22) WILD-TYPE      4      7      3
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        17                           4
  CLUS_2                        15                           7
  CLUS_3                        10                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       13      9     12      8
  AMP PEAK  1(1Q22) WILD-TYPE      6      4      1      3
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        13                           6
  CLUS_2                         9                           4
  CLUS_3                        12                           1
  CLUS_4                         8                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        7      9      8      6      5
  AMP PEAK  1(1Q22) WILD-TYPE      4      0      4      0      4
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                         9                           0
  CLUS_3                         8                           4
  CLUS_4                         6                           0
  CLUS_5                         5                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        5      8      5      6      5      3      3
  AMP PEAK  1(1Q22) WILD-TYPE      3      0      2      1      2      2      2
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                         8                           0
  CLUS_3                         5                           2
  CLUS_4                         6                           1
  CLUS_5                         5                           2
  CLUS_6                         3                           2
  CLUS_7                         3                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        9     16      9      8
  AMP PEAK  1(1Q22) WILD-TYPE      6      3      3      2
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         9                           6
  CLUS_2                        16                           3
  CLUS_3                         9                           3
  CLUS_4                         8                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        5      3      6      4      7      4     13
  AMP PEAK  1(1Q22) WILD-TYPE      5      1      2      2      1      2      1
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                           5
  CLUS_2                         3                           1
  CLUS_3                         6                           2
  CLUS_4                         4                           2
  CLUS_5                         7                           1
  CLUS_6                         4                           2
  CLUS_7                        13                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       12     15     15
  AMP PEAK  1(1Q22) WILD-TYPE      2      9      2
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        12                           2
  CLUS_2                        15                           9
  CLUS_3                        15                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       20      4     13      5
  AMP PEAK  1(1Q22) WILD-TYPE      3      4      5      1
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        20                           3
  CLUS_2                         4                           4
  CLUS_3                        13                           5
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        4     13     10     15
  AMP PEAK  1(1Q22) WILD-TYPE      5      1      4      3
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         4                           5
  CLUS_2                        13                           1
  CLUS_3                        10                           4
  CLUS_4                        15                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       21      4     12      5
  AMP PEAK  1(1Q22) WILD-TYPE      3      3      5      2
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        21                           3
  CLUS_2                         4                           3
  CLUS_3                        12                           5
  CLUS_4                         5                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2P14) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P14) MUTATED       13     10      5
  AMP PEAK  2(2P14) WILD-TYPE      8     12      8
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                        13                           8
  CLUS_2                        10                          12
  CLUS_3                         5                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P14) MUTATED       11      6      3      8
  AMP PEAK  2(2P14) WILD-TYPE      8      7     10      3
D2V2, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                        11                           8
  CLUS_2                         6                           7
  CLUS_3                         3                          10
  CLUS_4                         8                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2P14) MUTATED        7      4      6      3      5
  AMP PEAK  2(2P14) WILD-TYPE      4      5      6      3      4
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                         4                           5
  CLUS_3                         6                           6
  CLUS_4                         3                           3
  CLUS_5                         5                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(2P14) MUTATED        5      4      6      2      4      2      2
  AMP PEAK  2(2P14) WILD-TYPE      3      4      1      5      3      3      3
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                         4                           4
  CLUS_3                         6                           1
  CLUS_4                         2                           5
  CLUS_5                         4                           3
  CLUS_6                         2                           3
  CLUS_7                         2                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P14) MUTATED        9      5     10      4
  AMP PEAK  2(2P14) WILD-TYPE      6     14      2      6
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         9                           6
  CLUS_2                         5                          14
  CLUS_3                        10                           2
  CLUS_4                         4                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  2(2P14) MUTATED        7      1      3      5      2      5      5
  AMP PEAK  2(2P14) WILD-TYPE      3      3      5      1      6      1      9
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         7                           3
  CLUS_2                         1                           3
  CLUS_3                         3                           5
  CLUS_4                         5                           1
  CLUS_5                         2                           6
  CLUS_6                         5                           1
  CLUS_7                         5                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P14) MUTATED        8     14      6
  AMP PEAK  2(2P14) WILD-TYPE      6     10     11
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         8                           6
  CLUS_2                        14                          10
  CLUS_3                         6                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P14) MUTATED        8      5     11      4
  AMP PEAK  2(2P14) WILD-TYPE     15      3      7      2
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         8                          15
  CLUS_2                         5                           3
  CLUS_3                        11                           7
  CLUS_4                         4                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P14) MUTATED        6      7      9      6
  AMP PEAK  2(2P14) WILD-TYPE      3      7      5     12
D2V9, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         6                           3
  CLUS_2                         7                           7
  CLUS_3                         9                           5
  CLUS_4                         6                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P14) MUTATED        9      4     11      4
  AMP PEAK  2(2P14) WILD-TYPE     15      3      6      3
D2V10, multiclass
        clus
vv       AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE
  CLUS_1                         9                          15
  CLUS_2                         4                           3
  CLUS_3                        11                           6
  CLUS_4                         4                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2Q13) MUTATED       13     11      5
  AMP PEAK  3(2Q13) WILD-TYPE      8     11      8
D3V1, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                        13                           8
  CLUS_2                        11                          11
  CLUS_3                         5                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q13) MUTATED       10      6      4      9
  AMP PEAK  3(2Q13) WILD-TYPE      9      7      9      2
D3V2, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                        10                           9
  CLUS_2                         6                           7
  CLUS_3                         4                           9
  CLUS_4                         9                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2Q13) MUTATED        8      4      7      3      3
  AMP PEAK  3(2Q13) WILD-TYPE      3      5      5      3      6
D3V3, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                         8                           3
  CLUS_2                         4                           5
  CLUS_3                         7                           5
  CLUS_4                         3                           3
  CLUS_5                         3                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(2Q13) MUTATED        5      4      4      2      6      2      2
  AMP PEAK  3(2Q13) WILD-TYPE      3      4      3      5      1      3      3
D3V4, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                         4                           4
  CLUS_3                         4                           3
  CLUS_4                         2                           5
  CLUS_5                         6                           1
  CLUS_6                         2                           3
  CLUS_7                         2                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q13) MUTATED        8      7     11      3
  AMP PEAK  3(2Q13) WILD-TYPE      7     12      1      7
D3V5, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                         8                           7
  CLUS_2                         7                          12
  CLUS_3                        11                           1
  CLUS_4                         3                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(2Q13) MUTATED        6      1      5      4      2      5      6
  AMP PEAK  3(2Q13) WILD-TYPE      4      3      3      2      6      1      8
D3V6, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                         6                           4
  CLUS_2                         1                           3
  CLUS_3                         5                           3
  CLUS_4                         4                           2
  CLUS_5                         2                           6
  CLUS_6                         5                           1
  CLUS_7                         6                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2Q13) MUTATED        7     13      9
  AMP PEAK  3(2Q13) WILD-TYPE      7     11      8
D3V7, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                        13                          11
  CLUS_3                         9                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q13) MUTATED       10      5     10      4
  AMP PEAK  3(2Q13) WILD-TYPE     13      3      8      2
D3V8, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                        10                          13
  CLUS_2                         5                           3
  CLUS_3                        10                           8
  CLUS_4                         4                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q13) MUTATED        5      6      9      9
  AMP PEAK  3(2Q13) WILD-TYPE      4      8      5      9
D3V9, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                         5                           4
  CLUS_2                         6                           8
  CLUS_3                         9                           5
  CLUS_4                         9                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2Q13) MUTATED       11      5      9      4
  AMP PEAK  3(2Q13) WILD-TYPE     13      2      8      3
D3V10, multiclass
        clus
vv       AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                         5                           2
  CLUS_3                         9                           8
  CLUS_4                         4                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED        7      4      9
  AMP PEAK  4(3P25.1) WILD-TYPE     14     18      4
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           7                            14
  CLUS_2                           4                            18
  CLUS_3                           9                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P25.1) MUTATED        8      3      5      4
  AMP PEAK  4(3P25.1) WILD-TYPE     11     10      8      7
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           8                            11
  CLUS_2                           3                            10
  CLUS_3                           5                             8
  CLUS_4                           4                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED        5      2      3      2      4
  AMP PEAK  4(3P25.1) WILD-TYPE      6      7      9      4      5
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           2                             7
  CLUS_3                           3                             9
  CLUS_4                           2                             4
  CLUS_5                           4                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED        6      3      1      1      2      0
  AMP PEAK  4(3P25.1) WILD-TYPE      2      5      6      6      5      5
                               vv
clus                            CLUS_7
  AMP PEAK  4(3P25.1) MUTATED        3
  AMP PEAK  4(3P25.1) WILD-TYPE      2
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           3                             5
  CLUS_3                           1                             6
  CLUS_4                           1                             6
  CLUS_5                           2                             5
  CLUS_6                           0                             5
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P25.1) MUTATED        7      4      4      5
  AMP PEAK  4(3P25.1) WILD-TYPE      8     15      8      5
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           4                            15
  CLUS_3                           4                             8
  CLUS_4                           5                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED        7      0      1      1      3      3
  AMP PEAK  4(3P25.1) WILD-TYPE      3      4      7      5      5      3
                               vv
clus                            CLUS_7
  AMP PEAK  4(3P25.1) MUTATED        5
  AMP PEAK  4(3P25.1) WILD-TYPE      9
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           7                             3
  CLUS_2                           0                             4
  CLUS_3                           1                             7
  CLUS_4                           1                             5
  CLUS_5                           3                             5
  CLUS_6                           3                             3
  CLUS_7                           5                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED        2     13      5
  AMP PEAK  4(3P25.1) WILD-TYPE     12     11     12
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                          13                            11
  CLUS_3                           5                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P25.1) MUTATED        5      6      7      2
  AMP PEAK  4(3P25.1) WILD-TYPE     18      2     11      4
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           6                             2
  CLUS_3                           7                            11
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P25.1) MUTATED        5      4      7      4
  AMP PEAK  4(3P25.1) WILD-TYPE      4     10      7     14
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           4                            10
  CLUS_3                           7                             7
  CLUS_4                           4                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P25.1) MUTATED        5      5      8      2
  AMP PEAK  4(3P25.1) WILD-TYPE     19      2      9      5
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           5                             2
  CLUS_3                           8                             9
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.2) MUTATED       20     10      7
  AMP PEAK  5(3Q26.2) WILD-TYPE      1     12      6
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          20                             1
  CLUS_2                          10                            12
  CLUS_3                           7                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.2) MUTATED       16      4     11      6
  AMP PEAK  5(3Q26.2) WILD-TYPE      3      9      2      5
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          16                             3
  CLUS_2                           4                             9
  CLUS_3                          11                             2
  CLUS_4                           6                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.2) MUTATED       10      6      7      5      6
  AMP PEAK  5(3Q26.2) WILD-TYPE      1      3      5      1      3
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          10                             1
  CLUS_2                           6                             3
  CLUS_3                           7                             5
  CLUS_4                           5                             1
  CLUS_5                           6                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.2) MUTATED        8      7      6      4      4      2
  AMP PEAK  5(3Q26.2) WILD-TYPE      0      1      1      3      3      3
                               vv
clus                            CLUS_7
  AMP PEAK  5(3Q26.2) MUTATED        3
  AMP PEAK  5(3Q26.2) WILD-TYPE      2
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                           8                             0
  CLUS_2                           7                             1
  CLUS_3                           6                             1
  CLUS_4                           4                             3
  CLUS_5                           4                             3
  CLUS_6                           2                             3
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.2) MUTATED       13     11      7      6
  AMP PEAK  5(3Q26.2) WILD-TYPE      2      8      5      4
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          13                             2
  CLUS_2                          11                             8
  CLUS_3                           7                             5
  CLUS_4                           6                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.2) MUTATED        9      4      3      4      4      3
  AMP PEAK  5(3Q26.2) WILD-TYPE      1      0      5      2      4      3
                               vv
clus                            CLUS_7
  AMP PEAK  5(3Q26.2) MUTATED       10
  AMP PEAK  5(3Q26.2) WILD-TYPE      4
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                           9                             1
  CLUS_2                           4                             0
  CLUS_3                           3                             5
  CLUS_4                           4                             2
  CLUS_5                           4                             4
  CLUS_6                           3                             3
  CLUS_7                          10                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.2) MUTATED       10     16     11
  AMP PEAK  5(3Q26.2) WILD-TYPE      4      8      6
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                          16                             8
  CLUS_3                          11                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.2) MUTATED       16      7      9      5
  AMP PEAK  5(3Q26.2) WILD-TYPE      7      1      9      1
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          16                             7
  CLUS_2                           7                             1
  CLUS_3                           9                             9
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.2) MUTATED        9     10      7     11
  AMP PEAK  5(3Q26.2) WILD-TYPE      0      4      7      7
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                           9                             0
  CLUS_2                          10                             4
  CLUS_3                           7                             7
  CLUS_4                          11                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.2) MUTATED       16      7      9      5
  AMP PEAK  5(3Q26.2) WILD-TYPE      8      0      8      2
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          16                             8
  CLUS_2                           7                             0
  CLUS_3                           9                             8
  CLUS_4                           5                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED       15      4      6
  AMP PEAK  6(4P16.3) WILD-TYPE      6     18      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          15                             6
  CLUS_2                           4                            18
  CLUS_3                           6                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       11      4      6      4
  AMP PEAK  6(4P16.3) WILD-TYPE      8      9      7      7
D6V2, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          11                             8
  CLUS_2                           4                             9
  CLUS_3                           6                             7
  CLUS_4                           4                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4P16.3) MUTATED        5      2      5      3      5
  AMP PEAK  6(4P16.3) WILD-TYPE      6      7      7      3      4
D6V3, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           2                             7
  CLUS_3                           5                             7
  CLUS_4                           3                             3
  CLUS_5                           5                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4P16.3) MUTATED        7      3      0      1      3      3
  AMP PEAK  6(4P16.3) WILD-TYPE      1      5      7      6      4      2
                               vv
clus                            CLUS_7
  AMP PEAK  6(4P16.3) MUTATED        3
  AMP PEAK  6(4P16.3) WILD-TYPE      2
D6V4, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           7                             1
  CLUS_2                           3                             5
  CLUS_3                           0                             7
  CLUS_4                           1                             6
  CLUS_5                           3                             4
  CLUS_6                           3                             2
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED        8      7      3      7
  AMP PEAK  6(4P16.3) WILD-TYPE      7     12      9      3
D6V5, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           8                             7
  CLUS_2                           7                            12
  CLUS_3                           3                             9
  CLUS_4                           7                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4P16.3) MUTATED        8      1      2      3      4      1
  AMP PEAK  6(4P16.3) WILD-TYPE      2      3      6      3      4      5
                               vv
clus                            CLUS_7
  AMP PEAK  6(4P16.3) MUTATED        6
  AMP PEAK  6(4P16.3) WILD-TYPE      8
D6V6, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           8                             2
  CLUS_2                           1                             3
  CLUS_3                           2                             6
  CLUS_4                           3                             3
  CLUS_5                           4                             4
  CLUS_6                           1                             5
  CLUS_7                           6                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        5     12      8
  AMP PEAK  6(4P16.3) WILD-TYPE      9     12      9
D6V7, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                          12                            12
  CLUS_3                           8                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED        8      6      8      3
  AMP PEAK  6(4P16.3) WILD-TYPE     15      2     10      3
D6V8, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                           6                             2
  CLUS_3                           8                            10
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED        5      6      7      7
  AMP PEAK  6(4P16.3) WILD-TYPE      4      8      7     11
D6V9, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           6                             8
  CLUS_3                           7                             7
  CLUS_4                           7                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED        9      5      8      3
  AMP PEAK  6(4P16.3) WILD-TYPE     15      2      9      4
D6V10, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                           5                             2
  CLUS_3                           8                             9
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.2) MUTATED       10      7      9
  AMP PEAK  7(5P13.2) WILD-TYPE     11     15      4
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                          10                            11
  CLUS_2                           7                            15
  CLUS_3                           9                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.2) MUTATED       10      6      7      3
  AMP PEAK  7(5P13.2) WILD-TYPE      9      7      6      8
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                          10                             9
  CLUS_2                           6                             7
  CLUS_3                           7                             6
  CLUS_4                           3                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P13.2) MUTATED        7      2      3      3      5
  AMP PEAK  7(5P13.2) WILD-TYPE      4      7      9      3      4
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                           2                             7
  CLUS_3                           3                             9
  CLUS_4                           3                             3
  CLUS_5                           5                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P13.2) MUTATED        6      2      3      3      1      2
  AMP PEAK  7(5P13.2) WILD-TYPE      2      6      4      4      6      3
                               vv
clus                            CLUS_7
  AMP PEAK  7(5P13.2) MUTATED        3
  AMP PEAK  7(5P13.2) WILD-TYPE      2
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           2                             6
  CLUS_3                           3                             4
  CLUS_4                           3                             4
  CLUS_5                           1                             6
  CLUS_6                           2                             3
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.2) MUTATED        9     10      2      5
  AMP PEAK  7(5P13.2) WILD-TYPE      6      9     10      5
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                          10                             9
  CLUS_3                           2                            10
  CLUS_4                           5                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P13.2) MUTATED        8      0      2      3      4      1
  AMP PEAK  7(5P13.2) WILD-TYPE      2      4      6      3      4      5
                               vv
clus                            CLUS_7
  AMP PEAK  7(5P13.2) MUTATED        8
  AMP PEAK  7(5P13.2) WILD-TYPE      6
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                           8                             2
  CLUS_2                           0                             4
  CLUS_3                           2                             6
  CLUS_4                           3                             3
  CLUS_5                           4                             4
  CLUS_6                           1                             5
  CLUS_7                           8                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.2) MUTATED        4     12     10
  AMP PEAK  7(5P13.2) WILD-TYPE     10     12      7
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                          12                            12
  CLUS_3                          10                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.2) MUTATED       11      7      5      3
  AMP PEAK  7(5P13.2) WILD-TYPE     12      1     13      3
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                           7                             1
  CLUS_3                           5                            13
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.2) MUTATED        6      4      7      9
  AMP PEAK  7(5P13.2) WILD-TYPE      3     10      7      9
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                           4                            10
  CLUS_3                           7                             7
  CLUS_4                           9                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.2) MUTATED       11      6      6      3
  AMP PEAK  7(5P13.2) WILD-TYPE     13      1     11      4
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           6                             1
  CLUS_3                           6                            11
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.2) MUTATED       16     13      8
  AMP PEAK  8(6P24.2) WILD-TYPE      5      9      5
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          13                             9
  CLUS_3                           8                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.2) MUTATED       13      8      9      7
  AMP PEAK  8(6P24.2) WILD-TYPE      6      5      4      4
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                          13                             6
  CLUS_2                           8                             5
  CLUS_3                           9                             4
  CLUS_4                           7                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P24.2) MUTATED        8      6      7      4      6
  AMP PEAK  8(6P24.2) WILD-TYPE      3      3      5      2      3
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           6                             3
  CLUS_3                           7                             5
  CLUS_4                           4                             2
  CLUS_5                           6                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P24.2) MUTATED        6      4      5      6      5      1
  AMP PEAK  8(6P24.2) WILD-TYPE      2      4      2      1      2      4
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P24.2) MUTATED        4
  AMP PEAK  8(6P24.2) WILD-TYPE      1
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           4                             4
  CLUS_3                           5                             2
  CLUS_4                           6                             1
  CLUS_5                           5                             2
  CLUS_6                           1                             4
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.2) MUTATED       11     11      8      7
  AMP PEAK  8(6P24.2) WILD-TYPE      4      8      4      3
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                          11                             4
  CLUS_2                          11                             8
  CLUS_3                           8                             4
  CLUS_4                           7                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P24.2) MUTATED        8      1      6      3      7      4
  AMP PEAK  8(6P24.2) WILD-TYPE      2      3      2      3      1      2
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P24.2) MUTATED        8
  AMP PEAK  8(6P24.2) WILD-TYPE      6
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                           8                             2
  CLUS_2                           1                             3
  CLUS_3                           6                             2
  CLUS_4                           3                             3
  CLUS_5                           7                             1
  CLUS_6                           4                             2
  CLUS_7                           8                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.2) MUTATED        9     17     10
  AMP PEAK  8(6P24.2) WILD-TYPE      5      7      7
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                          17                             7
  CLUS_3                          10                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.2) MUTATED       15      7     10      4
  AMP PEAK  8(6P24.2) WILD-TYPE      8      1      8      2
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                          15                             8
  CLUS_2                           7                             1
  CLUS_3                          10                             8
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.2) MUTATED        6     10     10     10
  AMP PEAK  8(6P24.2) WILD-TYPE      3      4      4      8
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                          10                             4
  CLUS_3                          10                             4
  CLUS_4                          10                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.2) MUTATED       15      6     11      4
  AMP PEAK  8(6P24.2) WILD-TYPE      9      1      6      3
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE
  CLUS_1                          15                             9
  CLUS_2                           6                             1
  CLUS_3                          11                             6
  CLUS_4                           4                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.21) MUTATED       11     12     10
  AMP PEAK  9(8P11.21) WILD-TYPE     10     10      3
D9V1, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           12                             10
  CLUS_3                           10                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.21) MUTATED       11      8      9      5
  AMP PEAK  9(8P11.21) WILD-TYPE      8      5      4      6
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                           11                              8
  CLUS_2                            8                              5
  CLUS_3                            9                              4
  CLUS_4                            5                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8P11.21) MUTATED        5      5      5      6      4
  AMP PEAK  9(8P11.21) WILD-TYPE      6      4      7      0      5
D9V3, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            6                              0
  CLUS_5                            4                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.21) MUTATED        4      8      4      3      2      2
  AMP PEAK  9(8P11.21) WILD-TYPE      4      0      3      4      5      3
                                vv
clus                             CLUS_7
  AMP PEAK  9(8P11.21) MUTATED        2
  AMP PEAK  9(8P11.21) WILD-TYPE      3
D9V4, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            8                              0
  CLUS_3                            4                              3
  CLUS_4                            3                              4
  CLUS_5                            2                              5
  CLUS_6                            2                              3
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.21) MUTATED        8     13      5      7
  AMP PEAK  9(8P11.21) WILD-TYPE      7      6      7      3
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                            8                              7
  CLUS_2                           13                              6
  CLUS_3                            5                              7
  CLUS_4                            7                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8P11.21) MUTATED        5      2      5      4      7      2
  AMP PEAK  9(8P11.21) WILD-TYPE      5      2      3      2      1      4
                                vv
clus                             CLUS_7
  AMP PEAK  9(8P11.21) MUTATED        8
  AMP PEAK  9(8P11.21) WILD-TYPE      6
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                            5                              5
  CLUS_2                            2                              2
  CLUS_3                            5                              3
  CLUS_4                            4                              2
  CLUS_5                            7                              1
  CLUS_6                            2                              4
  CLUS_7                            8                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8P11.21) MUTATED        7     14     11
  AMP PEAK  9(8P11.21) WILD-TYPE      7     10      6
D9V7, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                           14                             10
  CLUS_3                           11                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.21) MUTATED       13      5     10      4
  AMP PEAK  9(8P11.21) WILD-TYPE     10      3      8      2
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                           13                             10
  CLUS_2                            5                              3
  CLUS_3                           10                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.21) MUTATED        6      9      6     11
  AMP PEAK  9(8P11.21) WILD-TYPE      3      5      8      7
D9V9, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            9                              5
  CLUS_3                            6                              8
  CLUS_4                           11                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8P11.21) MUTATED       14      5      8      5
  AMP PEAK  9(8P11.21) WILD-TYPE     10      2      9      2
D9V10, multiclass
        clus
vv       AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            5                              2
  CLUS_3                            8                              9
  CLUS_4                            5                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8Q11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.23) MUTATED       11     15     12
  AMP PEAK 10(8Q11.23) WILD-TYPE     10      7      1
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           15                              7
  CLUS_3                           12                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.23) MUTATED       13     11     10      4
  AMP PEAK 10(8Q11.23) WILD-TYPE      6      2      3      7
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                           13                              6
  CLUS_2                           11                              2
  CLUS_3                           10                              3
  CLUS_4                            4                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q11.23) MUTATED        7      6      5      4      8
  AMP PEAK 10(8Q11.23) WILD-TYPE      4      3      7      2      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                            7                              4
  CLUS_2                            6                              3
  CLUS_3                            5                              7
  CLUS_4                            4                              2
  CLUS_5                            8                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q11.23) MUTATED        6      6      3      5      2      3
  AMP PEAK 10(8Q11.23) WILD-TYPE      2      2      4      2      5      2
                                vv
clus                             CLUS_7
  AMP PEAK 10(8Q11.23) MUTATED        5
  AMP PEAK 10(8Q11.23) WILD-TYPE      0
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                            6                              2
  CLUS_2                            6                              2
  CLUS_3                            3                              4
  CLUS_4                            5                              2
  CLUS_5                            2                              5
  CLUS_6                            3                              2
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.23) MUTATED       12     15      4      7
  AMP PEAK 10(8Q11.23) WILD-TYPE      3      4      8      3
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                           12                              3
  CLUS_2                           15                              4
  CLUS_3                            4                              8
  CLUS_4                            7                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8Q11.23) MUTATED        8      2      6      4      6      1
  AMP PEAK 10(8Q11.23) WILD-TYPE      2      2      2      2      2      5
                                vv
clus                             CLUS_7
  AMP PEAK 10(8Q11.23) MUTATED       11
  AMP PEAK 10(8Q11.23) WILD-TYPE      3
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                            8                              2
  CLUS_2                            2                              2
  CLUS_3                            6                              2
  CLUS_4                            4                              2
  CLUS_5                            6                              2
  CLUS_6                            1                              5
  CLUS_7                           11                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q11.23) MUTATED        9     16     12
  AMP PEAK 10(8Q11.23) WILD-TYPE      5      8      5
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                           16                              8
  CLUS_3                           12                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.23) MUTATED       16      6     11      4
  AMP PEAK 10(8Q11.23) WILD-TYPE      7      2      7      2
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                            6                              2
  CLUS_3                           11                              7
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.23) MUTATED        7      9      8     13
  AMP PEAK 10(8Q11.23) WILD-TYPE      2      5      6      5
D10V9, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                            9                              5
  CLUS_3                            8                              6
  CLUS_4                           13                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q11.23) MUTATED       17      5     10      5
  AMP PEAK 10(8Q11.23) WILD-TYPE      7      2      7      2
D10V10, multiclass
        clus
vv       AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                            5                              2
  CLUS_3                           10                              7
  CLUS_4                            5                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       12     17     13
  AMP PEAK 11(8Q24.21) WILD-TYPE      9      5      0
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           17                              5
  CLUS_3                           13                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       14     11     10      7
  AMP PEAK 11(8Q24.21) WILD-TYPE      5      2      3      4
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           14                              5
  CLUS_2                           11                              2
  CLUS_3                           10                              3
  CLUS_4                            7                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8Q24.21) MUTATED        8      5      8      6      7
  AMP PEAK 11(8Q24.21) WILD-TYPE      3      4      4      0      2
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                            5                              4
  CLUS_3                            8                              4
  CLUS_4                            6                              0
  CLUS_5                            7                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED        5      7      5      5      5      3
  AMP PEAK 11(8Q24.21) WILD-TYPE      3      1      2      2      2      2
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q24.21) MUTATED        4
  AMP PEAK 11(8Q24.21) WILD-TYPE      1
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            7                              1
  CLUS_3                            5                              2
  CLUS_4                            5                              2
  CLUS_5                            5                              2
  CLUS_6                            3                              2
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       12     16      6      8
  AMP PEAK 11(8Q24.21) WILD-TYPE      3      3      6      2
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           12                              3
  CLUS_2                           16                              3
  CLUS_3                            6                              6
  CLUS_4                            8                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED        7      3      6      5      7      2
  AMP PEAK 11(8Q24.21) WILD-TYPE      3      1      2      1      1      4
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q24.21) MUTATED       12
  AMP PEAK 11(8Q24.21) WILD-TYPE      2
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            3                              1
  CLUS_3                            6                              2
  CLUS_4                            5                              1
  CLUS_5                            7                              1
  CLUS_6                            2                              4
  CLUS_7                           12                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       13     14     14
  AMP PEAK 11(8Q24.21) WILD-TYPE      1     10      3
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           13                              1
  CLUS_2                           14                             10
  CLUS_3                           14                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       21      5     10      5
  AMP PEAK 11(8Q24.21) WILD-TYPE      2      3      8      1
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           21                              2
  CLUS_2                            5                              3
  CLUS_3                           10                              8
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED        6     12      7     16
  AMP PEAK 11(8Q24.21) WILD-TYPE      3      2      7      2
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                           12                              2
  CLUS_3                            7                              7
  CLUS_4                           16                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       22      4      9      6
  AMP PEAK 11(8Q24.21) WILD-TYPE      2      3      8      1
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           22                              2
  CLUS_2                            4                              3
  CLUS_3                            9                              8
  CLUS_4                            6                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       11     16     13
  AMP PEAK 12(8Q24.21) WILD-TYPE     10      6      0
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           16                              6
  CLUS_3                           13                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       13     10     11      6
  AMP PEAK 12(8Q24.21) WILD-TYPE      6      3      2      5
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           13                              6
  CLUS_2                           10                              3
  CLUS_3                           11                              2
  CLUS_4                            6                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED        6      5      8      6      7
  AMP PEAK 12(8Q24.21) WILD-TYPE      5      4      4      0      2
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            5                              4
  CLUS_3                            8                              4
  CLUS_4                            6                              0
  CLUS_5                            7                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        5      7      3      5      4      4
  AMP PEAK 12(8Q24.21) WILD-TYPE      3      1      4      2      3      1
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        4
  AMP PEAK 12(8Q24.21) WILD-TYPE      1
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            7                              1
  CLUS_3                            3                              4
  CLUS_4                            5                              2
  CLUS_5                            4                              3
  CLUS_6                            4                              1
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       11     17      4      8
  AMP PEAK 12(8Q24.21) WILD-TYPE      4      2      8      2
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                              4
  CLUS_2                           17                              2
  CLUS_3                            4                              8
  CLUS_4                            8                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        6      3      5      4      7      2
  AMP PEAK 12(8Q24.21) WILD-TYPE      4      1      3      2      1      4
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED       13
  AMP PEAK 12(8Q24.21) WILD-TYPE      1
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            6                              4
  CLUS_2                            3                              1
  CLUS_3                            5                              3
  CLUS_4                            4                              2
  CLUS_5                            7                              1
  CLUS_6                            2                              4
  CLUS_7                           13                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       11     13     15
  AMP PEAK 12(8Q24.21) WILD-TYPE      3     11      2
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                              3
  CLUS_2                           13                             11
  CLUS_3                           15                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       20      4     10      5
  AMP PEAK 12(8Q24.21) WILD-TYPE      3      4      8      1
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           20                              3
  CLUS_2                            4                              4
  CLUS_3                           10                              8
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED        5     12      7     15
  AMP PEAK 12(8Q24.21) WILD-TYPE      4      2      7      3
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                           12                              2
  CLUS_3                            7                              7
  CLUS_4                           15                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       21      3      9      6
  AMP PEAK 12(8Q24.21) WILD-TYPE      3      4      8      1
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           21                              3
  CLUS_2                            3                              4
  CLUS_3                            9                              8
  CLUS_4                            6                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10Q22.2) MUTATED       11      7      8
  AMP PEAK 13(10Q22.2) WILD-TYPE     10     15      5
D13V1, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                            7                             15
  CLUS_3                            8                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(10Q22.2) MUTATED       10      5      7      4
  AMP PEAK 13(10Q22.2) WILD-TYPE      9      8      6      7
D13V2, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                           10                              9
  CLUS_2                            5                              8
  CLUS_3                            7                              6
  CLUS_4                            4                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10Q22.2) MUTATED        6      5      4      2      7
  AMP PEAK 13(10Q22.2) WILD-TYPE      5      4      8      4      2
D13V3, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            5                              4
  CLUS_3                            4                              8
  CLUS_4                            2                              4
  CLUS_5                            7                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.2) MUTATED        5      2      4      5      2      2
  AMP PEAK 13(10Q22.2) WILD-TYPE      3      6      3      2      5      3
                                vv
clus                             CLUS_7
  AMP PEAK 13(10Q22.2) MUTATED        4
  AMP PEAK 13(10Q22.2) WILD-TYPE      1
D13V4, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            2                              6
  CLUS_3                            4                              3
  CLUS_4                            5                              2
  CLUS_5                            2                              5
  CLUS_6                            2                              3
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(10Q22.2) MUTATED        8      9      5      4
  AMP PEAK 13(10Q22.2) WILD-TYPE      7     10      7      6
D13V5, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            8                              7
  CLUS_2                            9                             10
  CLUS_3                            5                              7
  CLUS_4                            4                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10Q22.2) MUTATED        6      1      3      3      3      3
  AMP PEAK 13(10Q22.2) WILD-TYPE      4      3      5      3      5      3
                                vv
clus                             CLUS_7
  AMP PEAK 13(10Q22.2) MUTATED        7
  AMP PEAK 13(10Q22.2) WILD-TYPE      7
D13V6, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            6                              4
  CLUS_2                            1                              3
  CLUS_3                            3                              5
  CLUS_4                            3                              3
  CLUS_5                            3                              5
  CLUS_6                            3                              3
  CLUS_7                            7                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10Q22.2) MUTATED        4     13      8
  AMP PEAK 13(10Q22.2) WILD-TYPE     10     11      9
D13V7, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                           13                             11
  CLUS_3                            8                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(10Q22.2) MUTATED        9      5      8      3
  AMP PEAK 13(10Q22.2) WILD-TYPE     14      3     10      3
D13V8, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                            5                              3
  CLUS_3                            8                             10
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(10Q22.2) MUTATED        6      4      7      8
  AMP PEAK 13(10Q22.2) WILD-TYPE      3     10      7     10
D13V9, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            4                             10
  CLUS_3                            7                              7
  CLUS_4                            8                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(10Q22.2) MUTATED        9      5      7      4
  AMP PEAK 13(10Q22.2) WILD-TYPE     15      2     10      3
D13V10, multiclass
        clus
vv       AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            5                              2
  CLUS_3                            7                             10
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.1) MUTATED        8      5      6
  AMP PEAK 14(11Q13.1) WILD-TYPE     13     17      7
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                            5                             17
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.1) MUTATED        8      3      4      4
  AMP PEAK 14(11Q13.1) WILD-TYPE     11     10      9      7
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            8                             11
  CLUS_2                            3                             10
  CLUS_3                            4                              9
  CLUS_4                            4                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q13.1) MUTATED        5      3      3      3      1
  AMP PEAK 14(11Q13.1) WILD-TYPE      6      6      9      3      8
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            3                              6
  CLUS_3                            3                              9
  CLUS_4                            3                              3
  CLUS_5                            1                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11Q13.1) MUTATED        3      2      4      4      1      1
  AMP PEAK 14(11Q13.1) WILD-TYPE      5      6      3      3      6      4
                                vv
clus                             CLUS_7
  AMP PEAK 14(11Q13.1) MUTATED        0
  AMP PEAK 14(11Q13.1) WILD-TYPE      5
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            2                              6
  CLUS_3                            4                              3
  CLUS_4                            4                              3
  CLUS_5                            1                              6
  CLUS_6                            1                              4
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.1) MUTATED        6      3      4      6
  AMP PEAK 14(11Q13.1) WILD-TYPE      9     16      8      4
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            3                             16
  CLUS_3                            4                              8
  CLUS_4                            6                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11Q13.1) MUTATED        4      1      3      3      5      1
  AMP PEAK 14(11Q13.1) WILD-TYPE      6      3      5      3      3      5
                                vv
clus                             CLUS_7
  AMP PEAK 14(11Q13.1) MUTATED        2
  AMP PEAK 14(11Q13.1) WILD-TYPE     12
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            1                              3
  CLUS_3                            3                              5
  CLUS_4                            3                              3
  CLUS_5                            5                              3
  CLUS_6                            1                              5
  CLUS_7                            2                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.1) MUTATED        6      9      4
  AMP PEAK 14(11Q13.1) WILD-TYPE      8     15     13
D14V7, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            9                             15
  CLUS_3                            4                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.1) MUTATED        8      3      6      2
  AMP PEAK 14(11Q13.1) WILD-TYPE     15      5     12      4
D14V8, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                            3                              5
  CLUS_3                            6                             12
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.1) MUTATED        2      7      5      5
  AMP PEAK 14(11Q13.1) WILD-TYPE      7      7      9     13
D14V9, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            7                              7
  CLUS_3                            5                              9
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.1) MUTATED        8      3      6      2
  AMP PEAK 14(11Q13.1) WILD-TYPE     16      4     11      5
D14V10, multiclass
        clus
vv       AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                            3                              4
  CLUS_3                            6                             11
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q12) MUTATED       11      8      3
  AMP PEAK 15(12Q12) WILD-TYPE     10     14     10
D15V1, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                         11                           10
  CLUS_2                          8                           14
  CLUS_3                          3                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q12) MUTATED       11      3      4      4
  AMP PEAK 15(12Q12) WILD-TYPE      8     10      9      7
D15V2, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                         11                            8
  CLUS_2                          3                           10
  CLUS_3                          4                            9
  CLUS_4                          4                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(12Q12) MUTATED        6      3      6      3      2
  AMP PEAK 15(12Q12) WILD-TYPE      5      6      6      3      7
D15V3, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                          6                            5
  CLUS_2                          3                            6
  CLUS_3                          6                            6
  CLUS_4                          3                            3
  CLUS_5                          2                            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(12Q12) MUTATED        3      4      6      2      4      1      0
  AMP PEAK 15(12Q12) WILD-TYPE      5      4      1      5      3      4      5
D15V4, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                          3                            5
  CLUS_2                          4                            4
  CLUS_3                          6                            1
  CLUS_4                          2                            5
  CLUS_5                          4                            3
  CLUS_6                          1                            4
  CLUS_7                          0                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q12) MUTATED        7      5      4      6
  AMP PEAK 15(12Q12) WILD-TYPE      8     14      8      4
D15V5, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                          7                            8
  CLUS_2                          5                           14
  CLUS_3                          4                            8
  CLUS_4                          6                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(12Q12) MUTATED        4      3      4      3      4      1      3
  AMP PEAK 15(12Q12) WILD-TYPE      6      1      4      3      4      5     11
D15V6, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                          4                            6
  CLUS_2                          3                            1
  CLUS_3                          4                            4
  CLUS_4                          3                            3
  CLUS_5                          4                            4
  CLUS_6                          1                            5
  CLUS_7                          3                           11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q12) MUTATED        7     10      5
  AMP PEAK 15(12Q12) WILD-TYPE      7     14     12
D15V7, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                          7                            7
  CLUS_2                         10                           14
  CLUS_3                          5                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q12) MUTATED       10      3      7      2
  AMP PEAK 15(12Q12) WILD-TYPE     13      5     11      4
D15V8, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                         10                           13
  CLUS_2                          3                            5
  CLUS_3                          7                           11
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q12) MUTATED        3      8      5      6
  AMP PEAK 15(12Q12) WILD-TYPE      6      6      9     12
D15V9, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                          3                            6
  CLUS_2                          8                            6
  CLUS_3                          5                            9
  CLUS_4                          6                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q12) MUTATED       10      3      7      2
  AMP PEAK 15(12Q12) WILD-TYPE     14      4     10      5
D15V10, multiclass
        clus
vv       AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE
  CLUS_1                         10                           14
  CLUS_2                          3                            4
  CLUS_3                          7                           10
  CLUS_4                          2                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        8      5      4
  AMP PEAK 16(12Q15) WILD-TYPE     13     17      9
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          8                           13
  CLUS_2                          5                           17
  CLUS_3                          4                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        6      3      3      5
  AMP PEAK 16(12Q15) WILD-TYPE     13     10     10      6
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                           13
  CLUS_2                          3                           10
  CLUS_3                          3                           10
  CLUS_4                          5                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q15) MUTATED        4      3      3      1      4
  AMP PEAK 16(12Q15) WILD-TYPE      7      6      9      5      5
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          4                            7
  CLUS_2                          3                            6
  CLUS_3                          3                            9
  CLUS_4                          1                            5
  CLUS_5                          4                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(12Q15) MUTATED        3      1      2      4      2      1      2
  AMP PEAK 16(12Q15) WILD-TYPE      5      7      5      3      5      4      3
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          3                            5
  CLUS_2                          1                            7
  CLUS_3                          2                            5
  CLUS_4                          4                            3
  CLUS_5                          2                            5
  CLUS_6                          1                            4
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        6      2      5      4
  AMP PEAK 16(12Q15) WILD-TYPE      9     17      7      6
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                            9
  CLUS_2                          2                           17
  CLUS_3                          5                            7
  CLUS_4                          4                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(12Q15) MUTATED        4      1      3      3      2      2      2
  AMP PEAK 16(12Q15) WILD-TYPE      6      3      5      3      6      4     12
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          4                            6
  CLUS_2                          1                            3
  CLUS_3                          3                            5
  CLUS_4                          3                            3
  CLUS_5                          2                            6
  CLUS_6                          2                            4
  CLUS_7                          2                           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        6      7      4
  AMP PEAK 16(12Q15) WILD-TYPE      8     17     13
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                            8
  CLUS_2                          7                           17
  CLUS_3                          4                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       10      3      4      0
  AMP PEAK 16(12Q15) WILD-TYPE     13      5     14      6
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         10                           13
  CLUS_2                          3                            5
  CLUS_3                          4                           14
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        2      6      5      4
  AMP PEAK 16(12Q15) WILD-TYPE      7      8      9     14
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          6                            8
  CLUS_3                          5                            9
  CLUS_4                          4                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       10      2      5      0
  AMP PEAK 16(12Q15) WILD-TYPE     14      5     12      7
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         10                           14
  CLUS_2                          2                            5
  CLUS_3                          5                           12
  CLUS_4                          0                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(13Q31.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q31.3) MUTATED       11     10      4
  AMP PEAK 17(13Q31.3) WILD-TYPE     10     12      9
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           10                             12
  CLUS_3                            4                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED       11      5      4      5
  AMP PEAK 17(13Q31.3) WILD-TYPE      8      8      9      6
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                           11                              8
  CLUS_2                            5                              8
  CLUS_3                            4                              9
  CLUS_4                            5                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(13Q31.3) MUTATED        7      6      4      3      2
  AMP PEAK 17(13Q31.3) WILD-TYPE      4      3      8      3      7
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            7                              4
  CLUS_2                            6                              3
  CLUS_3                            4                              8
  CLUS_4                            3                              3
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(13Q31.3) MUTATED        5      5      4      3      3      0
  AMP PEAK 17(13Q31.3) WILD-TYPE      3      3      3      4      4      5
                                vv
clus                             CLUS_7
  AMP PEAK 17(13Q31.3) MUTATED        2
  AMP PEAK 17(13Q31.3) WILD-TYPE      3
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            5                              3
  CLUS_3                            4                              3
  CLUS_4                            3                              4
  CLUS_5                            3                              4
  CLUS_6                            0                              5
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED        9      5      6      5
  AMP PEAK 17(13Q31.3) WILD-TYPE      6     14      6      5
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            9                              6
  CLUS_2                            5                             14
  CLUS_3                            6                              6
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(13Q31.3) MUTATED        7      3      4      3      3      3
  AMP PEAK 17(13Q31.3) WILD-TYPE      3      1      4      3      5      3
                                vv
clus                             CLUS_7
  AMP PEAK 17(13Q31.3) MUTATED        2
  AMP PEAK 17(13Q31.3) WILD-TYPE     12
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            3                              1
  CLUS_3                            4                              4
  CLUS_4                            3                              3
  CLUS_5                            3                              5
  CLUS_6                            3                              3
  CLUS_7                            2                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q31.3) MUTATED        6     16      3
  AMP PEAK 17(13Q31.3) WILD-TYPE      8      8     14
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                           16                              8
  CLUS_3                            3                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED        6      6     11      2
  AMP PEAK 17(13Q31.3) WILD-TYPE     17      2      7      4
D17V8, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                            6                              2
  CLUS_3                           11                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED        5      9      8      3
  AMP PEAK 17(13Q31.3) WILD-TYPE      4      5      6     15
D17V9, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            9                              5
  CLUS_3                            8                              6
  CLUS_4                            3                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q31.3) MUTATED        7      5     11      2
  AMP PEAK 17(13Q31.3) WILD-TYPE     17      2      6      5
D17V10, multiclass
        clus
vv       AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            5                              2
  CLUS_3                           11                              6
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED       10      3      7
  AMP PEAK 18(16P11.2) WILD-TYPE     11     19      6
D18V1, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           10                             11
  CLUS_2                            3                             19
  CLUS_3                            7                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED       11      2      3      4
  AMP PEAK 18(16P11.2) WILD-TYPE      8     11     10      7
D18V2, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           11                              8
  CLUS_2                            2                             11
  CLUS_3                            3                             10
  CLUS_4                            4                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16P11.2) MUTATED        7      3      1      4      1
  AMP PEAK 18(16P11.2) WILD-TYPE      4      6     11      2      8
D18V3, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            7                              4
  CLUS_2                            3                              6
  CLUS_3                            1                             11
  CLUS_4                            4                              2
  CLUS_5                            1                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P11.2) MUTATED        4      3      5      3      1      0
  AMP PEAK 18(16P11.2) WILD-TYPE      4      5      2      4      6      5
                                vv
clus                             CLUS_7
  AMP PEAK 18(16P11.2) MUTATED        0
  AMP PEAK 18(16P11.2) WILD-TYPE      5
D18V4, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            3                              5
  CLUS_3                            5                              2
  CLUS_4                            3                              4
  CLUS_5                            1                              6
  CLUS_6                            0                              5
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED        6      5      5      4
  AMP PEAK 18(16P11.2) WILD-TYPE      9     14      7      6
D18V5, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            5                             14
  CLUS_3                            5                              7
  CLUS_4                            4                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P11.2) MUTATED        5      1      1      5      4      1
  AMP PEAK 18(16P11.2) WILD-TYPE      5      3      7      1      4      5
                                vv
clus                             CLUS_7
  AMP PEAK 18(16P11.2) MUTATED        3
  AMP PEAK 18(16P11.2) WILD-TYPE     11
D18V6, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            5                              5
  CLUS_2                            1                              3
  CLUS_3                            1                              7
  CLUS_4                            5                              1
  CLUS_5                            4                              4
  CLUS_6                            1                              5
  CLUS_7                            3                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P11.2) MUTATED        6      9      5
  AMP PEAK 18(16P11.2) WILD-TYPE      8     15     12
D18V7, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            9                             15
  CLUS_3                            5                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED        8      5      5      2
  AMP PEAK 18(16P11.2) WILD-TYPE     15      3     13      4
D18V8, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                            5                              3
  CLUS_3                            5                             13
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED        5      5      5      5
  AMP PEAK 18(16P11.2) WILD-TYPE      4      9      9     13
D18V9, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            5                              9
  CLUS_3                            5                              9
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P11.2) MUTATED        9      5      4      2
  AMP PEAK 18(16P11.2) WILD-TYPE     15      2     13      5
D18V10, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            5                              2
  CLUS_3                            4                             13
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       10     11      6
  AMP PEAK 19(17Q12) WILD-TYPE     11     11      7
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         10                           11
  CLUS_2                         11                           11
  CLUS_3                          6                            7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       11      6      3      7
  AMP PEAK 19(17Q12) WILD-TYPE      8      7     10      4
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         11                            8
  CLUS_2                          6                            7
  CLUS_3                          3                           10
  CLUS_4                          7                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        6      3      6      3      4
  AMP PEAK 19(17Q12) WILD-TYPE      5      6      6      3      5
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          6                            5
  CLUS_2                          3                            6
  CLUS_3                          6                            6
  CLUS_4                          3                            3
  CLUS_5                          4                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(17Q12) MUTATED        5      4      2      4      4      2      1
  AMP PEAK 19(17Q12) WILD-TYPE      3      4      5      3      3      3      4
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          5                            3
  CLUS_2                          4                            4
  CLUS_3                          2                            5
  CLUS_4                          4                            3
  CLUS_5                          4                            3
  CLUS_6                          2                            3
  CLUS_7                          1                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED        9      6      7      5
  AMP PEAK 19(17Q12) WILD-TYPE      6     13      5      5
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          9                            6
  CLUS_2                          6                           13
  CLUS_3                          7                            5
  CLUS_4                          5                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(17Q12) MUTATED        7      1      4      4      4      3      4
  AMP PEAK 19(17Q12) WILD-TYPE      3      3      4      2      4      3     10
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          7                            3
  CLUS_2                          1                            3
  CLUS_3                          4                            4
  CLUS_4                          4                            2
  CLUS_5                          4                            4
  CLUS_6                          3                            3
  CLUS_7                          4                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED        9     13      5
  AMP PEAK 19(17Q12) WILD-TYPE      5     11     12
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          9                            5
  CLUS_2                         13                           11
  CLUS_3                          5                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       11      5      9      2
  AMP PEAK 19(17Q12) WILD-TYPE     12      3      9      4
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         11                           12
  CLUS_2                          5                            3
  CLUS_3                          9                            9
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED        6      6      8      7
  AMP PEAK 19(17Q12) WILD-TYPE      3      8      6     11
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          6                            3
  CLUS_2                          6                            8
  CLUS_3                          8                            6
  CLUS_4                          7                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       12      4      8      3
  AMP PEAK 19(17Q12) WILD-TYPE     12      3      9      4
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                          4                            3
  CLUS_3                          8                            9
  CLUS_4                          3                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       13     10      9
  AMP PEAK 20(17Q25.1) WILD-TYPE      8     12      4
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           13                              8
  CLUS_2                           10                             12
  CLUS_3                            9                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED       14      4      8      6
  AMP PEAK 20(17Q25.1) WILD-TYPE      5      9      5      5
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           14                              5
  CLUS_2                            4                              9
  CLUS_3                            8                              5
  CLUS_4                            6                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q25.1) MUTATED        7      6      6      3      4
  AMP PEAK 20(17Q25.1) WILD-TYPE      4      3      6      3      5
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            7                              4
  CLUS_2                            6                              3
  CLUS_3                            6                              6
  CLUS_4                            3                              3
  CLUS_5                            4                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q25.1) MUTATED        6      5      3      3      5      2
  AMP PEAK 20(17Q25.1) WILD-TYPE      2      3      4      4      2      3
                                vv
clus                             CLUS_7
  AMP PEAK 20(17Q25.1) MUTATED        2
  AMP PEAK 20(17Q25.1) WILD-TYPE      3
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            6                              2
  CLUS_2                            5                              3
  CLUS_3                            3                              4
  CLUS_4                            3                              4
  CLUS_5                            5                              2
  CLUS_6                            2                              3
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED       10      9      8      5
  AMP PEAK 20(17Q25.1) WILD-TYPE      5     10      4      5
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           10                              5
  CLUS_2                            9                             10
  CLUS_3                            8                              4
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q25.1) MUTATED        8      2      2      3      6      4
  AMP PEAK 20(17Q25.1) WILD-TYPE      2      2      6      3      2      2
                                vv
clus                             CLUS_7
  AMP PEAK 20(17Q25.1) MUTATED        7
  AMP PEAK 20(17Q25.1) WILD-TYPE      7
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            8                              2
  CLUS_2                            2                              2
  CLUS_3                            2                              6
  CLUS_4                            3                              3
  CLUS_5                            6                              2
  CLUS_6                            4                              2
  CLUS_7                            7                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED        9     15      8
  AMP PEAK 20(17Q25.1) WILD-TYPE      5      9      9
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                           15                              9
  CLUS_3                            8                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED       12      6     11      3
  AMP PEAK 20(17Q25.1) WILD-TYPE     11      2      7      3
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           12                             11
  CLUS_2                            6                              2
  CLUS_3                           11                              7
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED        7      7     10      8
  AMP PEAK 20(17Q25.1) WILD-TYPE      2      7      4     10
D20V9, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                            7                              7
  CLUS_3                           10                              4
  CLUS_4                            8                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED       13      5     11      3
  AMP PEAK 20(17Q25.1) WILD-TYPE     11      2      6      4
D20V10, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            5                              2
  CLUS_3                           11                              6
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED        8      4      7
  AMP PEAK 21(19P13.2) WILD-TYPE     13     18      6
D21V1, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                            4                             18
  CLUS_3                            7                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        5      3      7      4
  AMP PEAK 21(19P13.2) WILD-TYPE     14     10      6      7
D21V2, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            5                             14
  CLUS_2                            3                             10
  CLUS_3                            7                              6
  CLUS_4                            4                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19P13.2) MUTATED        4      1      6      2      2
  AMP PEAK 21(19P13.2) WILD-TYPE      7      8      6      4      7
D21V3, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            1                              8
  CLUS_3                            6                              6
  CLUS_4                            2                              4
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19P13.2) MUTATED        4      2      1      2      2      3
  AMP PEAK 21(19P13.2) WILD-TYPE      4      6      6      5      5      2
                                vv
clus                             CLUS_7
  AMP PEAK 21(19P13.2) MUTATED        1
  AMP PEAK 21(19P13.2) WILD-TYPE      4
D21V4, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            2                              6
  CLUS_3                            1                              6
  CLUS_4                            2                              5
  CLUS_5                            2                              5
  CLUS_6                            3                              2
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        5      8      4      2
  AMP PEAK 21(19P13.2) WILD-TYPE     10     11      8      8
D21V5, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            8                             11
  CLUS_3                            4                              8
  CLUS_4                            2                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19P13.2) MUTATED        4      0      1      2      2      2
  AMP PEAK 21(19P13.2) WILD-TYPE      6      4      7      4      6      4
                                vv
clus                             CLUS_7
  AMP PEAK 21(19P13.2) MUTATED        8
  AMP PEAK 21(19P13.2) WILD-TYPE      6
D21V6, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            0                              4
  CLUS_3                            1                              7
  CLUS_4                            2                              4
  CLUS_5                            2                              6
  CLUS_6                            2                              4
  CLUS_7                            8                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED        4      6      9
  AMP PEAK 21(19P13.2) WILD-TYPE     10     18      8
D21V7, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                             18
  CLUS_3                            9                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        8      3      4      4
  AMP PEAK 21(19P13.2) WILD-TYPE     15      5     14      2
D21V8, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                            3                              5
  CLUS_3                            4                             14
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        3      7      1      8
  AMP PEAK 21(19P13.2) WILD-TYPE      6      7     13     10
D21V9, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            7                              7
  CLUS_3                            1                             13
  CLUS_4                            8                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        9      3      3      4
  AMP PEAK 21(19P13.2) WILD-TYPE     15      4     14      3
D21V10, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            3                              4
  CLUS_3                            3                             14
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       21     12     12
  AMP PEAK 22(19Q12) WILD-TYPE      0     10      1
D22V1, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         21                            0
  CLUS_2                         12                           10
  CLUS_3                         12                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED       17      5     12     11
  AMP PEAK 22(19Q12) WILD-TYPE      2      8      1      0
D22V2, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         17                            2
  CLUS_2                          5                            8
  CLUS_3                         12                            1
  CLUS_4                         11                            0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19Q12) MUTATED       11      7      9      6      6
  AMP PEAK 22(19Q12) WILD-TYPE      0      2      3      0      3
D22V3, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         11                            0
  CLUS_2                          7                            2
  CLUS_3                          9                            3
  CLUS_4                          6                            0
  CLUS_5                          6                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(19Q12) MUTATED        8      6      7      6      6      3      3
  AMP PEAK 22(19Q12) WILD-TYPE      0      2      0      1      1      2      2
D22V4, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          8                            0
  CLUS_2                          6                            2
  CLUS_3                          7                            0
  CLUS_4                          6                            1
  CLUS_5                          6                            1
  CLUS_6                          3                            2
  CLUS_7                          3                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED       13     13     10      9
  AMP PEAK 22(19Q12) WILD-TYPE      2      6      2      1
D22V5, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         13                            2
  CLUS_2                         13                            6
  CLUS_3                         10                            2
  CLUS_4                          9                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 22(19Q12) MUTATED       10      3      3      6      6      6     11
  AMP PEAK 22(19Q12) WILD-TYPE      0      1      5      0      2      0      3
D22V6, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         10                            0
  CLUS_2                          3                            1
  CLUS_3                          3                            5
  CLUS_4                          6                            0
  CLUS_5                          6                            2
  CLUS_6                          6                            0
  CLUS_7                         11                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19Q12) MUTATED       10     21     14
  AMP PEAK 22(19Q12) WILD-TYPE      4      3      3
D22V7, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         10                            4
  CLUS_2                         21                            3
  CLUS_3                         14                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED       17      8     15      5
  AMP PEAK 22(19Q12) WILD-TYPE      6      0      3      1
D22V8, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         17                            6
  CLUS_2                          8                            0
  CLUS_3                         15                            3
  CLUS_4                          5                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED        8     13     12     12
  AMP PEAK 22(19Q12) WILD-TYPE      1      1      2      6
D22V9, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          8                            1
  CLUS_2                         13                            1
  CLUS_3                         12                            2
  CLUS_4                         12                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19Q12) MUTATED       18      7     15      5
  AMP PEAK 22(19Q12) WILD-TYPE      6      0      2      2
D22V10, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         18                            6
  CLUS_2                          7                            0
  CLUS_3                         15                            2
  CLUS_4                          5                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED       21     15     12
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      7      1
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            21                               0
  CLUS_2                            15                               7
  CLUS_3                            12                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED       19     10     10      9
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      3      3      2
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            19                               0
  CLUS_2                            10                               3
  CLUS_3                            10                               3
  CLUS_4                             9                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q11.21) MUTATED       11      9      9      4      7
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      0      3      2      2
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            11                               0
  CLUS_2                             9                               0
  CLUS_3                             9                               3
  CLUS_4                             4                               2
  CLUS_5                             7                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q11.21) MUTATED        8      6      7      6      6      3
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      2      0      1      1      2
                                 vv
clus                              CLUS_7
  AMP PEAK 23(20Q11.21) MUTATED        4
  AMP PEAK 23(20Q11.21) WILD-TYPE      1
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                             8                               0
  CLUS_2                             6                               2
  CLUS_3                             7                               0
  CLUS_4                             6                               1
  CLUS_5                             6                               1
  CLUS_6                             3                               2
  CLUS_7                             4                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED       14     14     11      9
  AMP PEAK 23(20Q11.21) WILD-TYPE      1      5      1      1
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            14                               1
  CLUS_2                            14                               5
  CLUS_3                            11                               1
  CLUS_4                             9                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q11.21) MUTATED       10      4      6      6      7      5
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      0      2      0      1      1
                                 vv
clus                              CLUS_7
  AMP PEAK 23(20Q11.21) MUTATED       10
  AMP PEAK 23(20Q11.21) WILD-TYPE      4
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            10                               0
  CLUS_2                             4                               0
  CLUS_3                             6                               2
  CLUS_4                             6                               0
  CLUS_5                             7                               1
  CLUS_6                             5                               1
  CLUS_7                            10                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q11.21) MUTATED       12     23     12
  AMP PEAK 23(20Q11.21) WILD-TYPE      2      1      5
D23V7, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            12                               2
  CLUS_2                            23                               1
  CLUS_3                            12                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED       18      8     17      4
  AMP PEAK 23(20Q11.21) WILD-TYPE      5      0      1      2
D23V8, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            18                               5
  CLUS_2                             8                               0
  CLUS_3                            17                               1
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED        9     12     13     13
  AMP PEAK 23(20Q11.21) WILD-TYPE      0      2      1      5
D23V9, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                             9                               0
  CLUS_2                            12                               2
  CLUS_3                            13                               1
  CLUS_4                            13                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q11.21) MUTATED       19      7     16      5
  AMP PEAK 23(20Q11.21) WILD-TYPE      5      0      1      2
D23V10, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            19                               5
  CLUS_2                             7                               0
  CLUS_3                            16                               1
  CLUS_4                             5                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       20     16     12
  AMP PEAK 24(20Q11.21) WILD-TYPE      1      6      1
D24V1, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            20                               1
  CLUS_2                            16                               6
  CLUS_3                            12                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       19     11     10      8
  AMP PEAK 24(20Q11.21) WILD-TYPE      0      2      3      3
D24V2, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            19                               0
  CLUS_2                            11                               2
  CLUS_3                            10                               3
  CLUS_4                             8                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q11.21) MUTATED       11      9      8      4      8
  AMP PEAK 24(20Q11.21) WILD-TYPE      0      0      4      2      1
D24V3, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            11                               0
  CLUS_2                             9                               0
  CLUS_3                             8                               4
  CLUS_4                             4                               2
  CLUS_5                             8                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20Q11.21) MUTATED        8      6      6      7      6      3
  AMP PEAK 24(20Q11.21) WILD-TYPE      0      2      1      0      1      2
                                 vv
clus                              CLUS_7
  AMP PEAK 24(20Q11.21) MUTATED        4
  AMP PEAK 24(20Q11.21) WILD-TYPE      1
D24V4, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                             8                               0
  CLUS_2                             6                               2
  CLUS_3                             6                               1
  CLUS_4                             7                               0
  CLUS_5                             6                               1
  CLUS_6                             3                               2
  CLUS_7                             4                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       15     14     10      9
  AMP PEAK 24(20Q11.21) WILD-TYPE      0      5      2      1
D24V5, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            15                               0
  CLUS_2                            14                               5
  CLUS_3                            10                               2
  CLUS_4                             9                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20Q11.21) MUTATED       10      4      7      6      7      4
  AMP PEAK 24(20Q11.21) WILD-TYPE      0      0      1      0      1      2
                                 vv
clus                              CLUS_7
  AMP PEAK 24(20Q11.21) MUTATED       10
  AMP PEAK 24(20Q11.21) WILD-TYPE      4
D24V6, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            10                               0
  CLUS_2                             4                               0
  CLUS_3                             7                               1
  CLUS_4                             6                               0
  CLUS_5                             7                               1
  CLUS_6                             4                               2
  CLUS_7                            10                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       13     22     12
  AMP PEAK 24(20Q11.21) WILD-TYPE      1      2      5
D24V7, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            13                               1
  CLUS_2                            22                               2
  CLUS_3                            12                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       19      8     16      4
  AMP PEAK 24(20Q11.21) WILD-TYPE      4      0      2      2
D24V8, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            19                               4
  CLUS_2                             8                               0
  CLUS_3                            16                               2
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED        9     12     13     13
  AMP PEAK 24(20Q11.21) WILD-TYPE      0      2      1      5
D24V9, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                             9                               0
  CLUS_2                            12                               2
  CLUS_3                            13                               1
  CLUS_4                            13                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       20      7     15      5
  AMP PEAK 24(20Q11.21) WILD-TYPE      4      0      2      2
D24V10, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            20                               4
  CLUS_2                             7                               0
  CLUS_3                            15                               2
  CLUS_4                             5                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XP11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XP11.21) MUTATED       14      8      6
  AMP PEAK 25(XP11.21) WILD-TYPE      7     14      7
D25V1, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                           14                              7
  CLUS_2                            8                             14
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XP11.21) MUTATED       11      6      8      3
  AMP PEAK 25(XP11.21) WILD-TYPE      8      7      5      8
D25V2, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                           11                              8
  CLUS_2                            6                              7
  CLUS_3                            8                              5
  CLUS_4                            3                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XP11.21) MUTATED        6      5      3      4      7
  AMP PEAK 25(XP11.21) WILD-TYPE      5      4      9      2      2
D25V3, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            5                              4
  CLUS_3                            3                              9
  CLUS_4                            4                              2
  CLUS_5                            7                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XP11.21) MUTATED        4      4      5      4      2      1
  AMP PEAK 25(XP11.21) WILD-TYPE      4      4      2      3      5      4
                                vv
clus                             CLUS_7
  AMP PEAK 25(XP11.21) MUTATED        5
  AMP PEAK 25(XP11.21) WILD-TYPE      0
D25V4, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            4                              4
  CLUS_3                            5                              2
  CLUS_4                            4                              3
  CLUS_5                            2                              5
  CLUS_6                            1                              4
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XP11.21) MUTATED        7      8      5      8
  AMP PEAK 25(XP11.21) WILD-TYPE      8     11      7      2
D25V5, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                            8                             11
  CLUS_3                            5                              7
  CLUS_4                            8                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XP11.21) MUTATED        6      1      3      3      7      2
  AMP PEAK 25(XP11.21) WILD-TYPE      4      3      5      3      1      4
                                vv
clus                             CLUS_7
  AMP PEAK 25(XP11.21) MUTATED        6
  AMP PEAK 25(XP11.21) WILD-TYPE      8
D25V6, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            6                              4
  CLUS_2                            1                              3
  CLUS_3                            3                              5
  CLUS_4                            3                              3
  CLUS_5                            7                              1
  CLUS_6                            2                              4
  CLUS_7                            6                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XP11.21) MUTATED        3     16      8
  AMP PEAK 25(XP11.21) WILD-TYPE     11      8      9
D25V7, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                           16                              8
  CLUS_3                            8                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XP11.21) MUTATED        7      6     11      3
  AMP PEAK 25(XP11.21) WILD-TYPE     16      2      7      3
D25V8, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                            6                              2
  CLUS_3                           11                              7
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XP11.21) MUTATED        6      6      8      7
  AMP PEAK 25(XP11.21) WILD-TYPE      3      8      6     11
D25V9, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            6                              8
  CLUS_3                            8                              6
  CLUS_4                            7                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XP11.21) MUTATED        7      5     11      4
  AMP PEAK 25(XP11.21) WILD-TYPE     17      2      6      3
D25V10, multiclass
        clus
vv       AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            5                              2
  CLUS_3                           11                              6
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        7      5      7
  DEL PEAK  1(1P36.21) WILD-TYPE     14     17      6
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                             14
  CLUS_2                            5                             17
  CLUS_3                            7                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        6      1      7      5
  DEL PEAK  1(1P36.21) WILD-TYPE     13     12      6      6
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            6                             13
  CLUS_2                            1                             12
  CLUS_3                            7                              6
  CLUS_4                            5                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        4      2      5      1      4
  DEL PEAK  1(1P36.21) WILD-TYPE      7      7      7      5      5
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            2                              7
  CLUS_3                            5                              7
  CLUS_4                            1                              5
  CLUS_5                            4                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        3      2      4      2      2      2
  DEL PEAK  1(1P36.21) WILD-TYPE      5      6      3      5      5      3
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        1
  DEL PEAK  1(1P36.21) WILD-TYPE      4
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            2                              6
  CLUS_3                            4                              3
  CLUS_4                            2                              5
  CLUS_5                            2                              5
  CLUS_6                            2                              3
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        6      8      3      2
  DEL PEAK  1(1P36.21) WILD-TYPE      9     11      9      8
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            8                             11
  CLUS_3                            3                              9
  CLUS_4                            2                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        3      2      1      3      0      2
  DEL PEAK  1(1P36.21) WILD-TYPE      7      2      7      3      8      4
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.21) MUTATED        8
  DEL PEAK  1(1P36.21) WILD-TYPE      6
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            2                              2
  CLUS_3                            1                              7
  CLUS_4                            3                              3
  CLUS_5                            0                              8
  CLUS_6                            2                              4
  CLUS_7                            8                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        7      4      8
  DEL PEAK  1(1P36.21) WILD-TYPE      7     20      9
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            4                             20
  CLUS_3                            8                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       13      1      3      2
  DEL PEAK  1(1P36.21) WILD-TYPE     10      7     15      4
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           13                             10
  CLUS_2                            1                              7
  CLUS_3                            3                             15
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        3      6      2      8
  DEL PEAK  1(1P36.21) WILD-TYPE      6      8     12     10
D26V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            6                              8
  CLUS_3                            2                             12
  CLUS_4                            8                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED       13      1      3      2
  DEL PEAK  1(1P36.21) WILD-TYPE     11      6     14      5
D26V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            1                              6
  CLUS_3                            3                             14
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q22.1) MUTATED        2      5      4
  DEL PEAK  2(2Q22.1) WILD-TYPE     19     17      9
D27V1, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                            19
  CLUS_2                           5                            17
  CLUS_3                           4                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        6      3      1      1
  DEL PEAK  2(2Q22.1) WILD-TYPE     13     10     12     10
D27V2, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           6                            13
  CLUS_2                           3                            10
  CLUS_3                           1                            12
  CLUS_4                           1                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2Q22.1) MUTATED        3      3      2      2      1
  DEL PEAK  2(2Q22.1) WILD-TYPE      8      6     10      4      8
D27V3, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           3                             6
  CLUS_3                           2                            10
  CLUS_4                           2                             4
  CLUS_5                           1                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q22.1) MUTATED        1      3      2      3      2      0
  DEL PEAK  2(2Q22.1) WILD-TYPE      7      5      5      4      5      5
                               vv
clus                            CLUS_7
  DEL PEAK  2(2Q22.1) MUTATED        0
  DEL PEAK  2(2Q22.1) WILD-TYPE      5
D27V4, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           3                             5
  CLUS_3                           2                             5
  CLUS_4                           3                             4
  CLUS_5                           2                             5
  CLUS_6                           0                             5
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        4      1      4      2
  DEL PEAK  2(2Q22.1) WILD-TYPE     11     18      8      8
D27V5, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                           1                            18
  CLUS_3                           4                             8
  CLUS_4                           2                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q22.1) MUTATED        2      2      2      2      2      1
  DEL PEAK  2(2Q22.1) WILD-TYPE      8      2      6      4      6      5
                               vv
clus                            CLUS_7
  DEL PEAK  2(2Q22.1) MUTATED        0
  DEL PEAK  2(2Q22.1) WILD-TYPE     14
D27V6, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           2                             2
  CLUS_3                           2                             6
  CLUS_4                           2                             4
  CLUS_5                           2                             6
  CLUS_6                           1                             5
  CLUS_7                           0                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q22.1) MUTATED        5      6      0
  DEL PEAK  2(2Q22.1) WILD-TYPE      9     18     17
D27V7, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           6                            18
  CLUS_3                           0                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        4      2      5      0
  DEL PEAK  2(2Q22.1) WILD-TYPE     19      6     13      6
D27V8, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           2                             6
  CLUS_3                           5                            13
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        3      4      2      2
  DEL PEAK  2(2Q22.1) WILD-TYPE      6     10     12     16
D27V9, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           4                            10
  CLUS_3                           2                            12
  CLUS_4                           2                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        5      2      3      1
  DEL PEAK  2(2Q22.1) WILD-TYPE     19      5     14      6
D27V10, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           2                             5
  CLUS_3                           3                            14
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  3(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P14.2) MUTATED       16     14      7
  DEL PEAK  3(3P14.2) WILD-TYPE      5      8      6
D28V1, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          14                             8
  CLUS_3                           7                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P14.2) MUTATED       12      7      9      9
  DEL PEAK  3(3P14.2) WILD-TYPE      7      6      4      2
D28V2, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                          12                             7
  CLUS_2                           7                             6
  CLUS_3                           9                             4
  CLUS_4                           9                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P14.2) MUTATED        8      7      9      3      5
  DEL PEAK  3(3P14.2) WILD-TYPE      3      2      3      3      4
D28V3, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           7                             2
  CLUS_3                           9                             3
  CLUS_4                           3                             3
  CLUS_5                           5                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P14.2) MUTATED        6      6      4      5      6      3
  DEL PEAK  3(3P14.2) WILD-TYPE      2      2      3      2      1      2
                               vv
clus                            CLUS_7
  DEL PEAK  3(3P14.2) MUTATED        2
  DEL PEAK  3(3P14.2) WILD-TYPE      3
D28V4, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           6                             2
  CLUS_3                           4                             3
  CLUS_4                           5                             2
  CLUS_5                           6                             1
  CLUS_6                           3                             2
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P14.2) MUTATED       10     11     10      6
  DEL PEAK  3(3P14.2) WILD-TYPE      5      8      2      4
D28V5, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                          10                             5
  CLUS_2                          11                             8
  CLUS_3                          10                             2
  CLUS_4                           6                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P14.2) MUTATED        6      4      6      4      3      5
  DEL PEAK  3(3P14.2) WILD-TYPE      4      0      2      2      5      1
                               vv
clus                            CLUS_7
  DEL PEAK  3(3P14.2) MUTATED        9
  DEL PEAK  3(3P14.2) WILD-TYPE      5
D28V6, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                           6                             4
  CLUS_2                           4                             0
  CLUS_3                           6                             2
  CLUS_4                           4                             2
  CLUS_5                           3                             5
  CLUS_6                           5                             1
  CLUS_7                           9                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P14.2) MUTATED       10     16     11
  DEL PEAK  3(3P14.2) WILD-TYPE      4      8      6
D28V7, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                          16                             8
  CLUS_3                          11                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P14.2) MUTATED       16      5     13      3
  DEL PEAK  3(3P14.2) WILD-TYPE      7      3      5      3
D28V8, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                          16                             7
  CLUS_2                           5                             3
  CLUS_3                          13                             5
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P14.2) MUTATED        6     12      8     11
  DEL PEAK  3(3P14.2) WILD-TYPE      3      2      6      7
D28V9, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                          12                             2
  CLUS_3                           8                             6
  CLUS_4                          11                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P14.2) MUTATED       17      5     11      4
  DEL PEAK  3(3P14.2) WILD-TYPE      7      2      6      3
D28V10, multiclass
        clus
vv       DEL PEAK  3(3P14.2) MUTATED DEL PEAK  3(3P14.2) WILD-TYPE
  CLUS_1                          17                             7
  CLUS_2                           5                             2
  CLUS_3                          11                             6
  CLUS_4                           4                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  4(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q13.31) MUTATED        5     11      6
  DEL PEAK  4(3Q13.31) WILD-TYPE     16     11      7
D29V1, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             11
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        9      6      3      4
  DEL PEAK  4(3Q13.31) WILD-TYPE     10      7     10      7
D29V2, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            9                             10
  CLUS_2                            6                              7
  CLUS_3                            3                             10
  CLUS_4                            4                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3Q13.31) MUTATED        4      6      5      2      1
  DEL PEAK  4(3Q13.31) WILD-TYPE      7      3      7      4      8
D29V3, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            6                              3
  CLUS_3                            5                              7
  CLUS_4                            2                              4
  CLUS_5                            1                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q13.31) MUTATED        1      5      3      4      4      1
  DEL PEAK  4(3Q13.31) WILD-TYPE      7      3      4      3      3      4
                                vv
clus                             CLUS_7
  DEL PEAK  4(3Q13.31) MUTATED        0
  DEL PEAK  4(3Q13.31) WILD-TYPE      5
D29V4, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            5                              3
  CLUS_3                            3                              4
  CLUS_4                            4                              3
  CLUS_5                            4                              3
  CLUS_6                            1                              4
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        5      6      6      5
  DEL PEAK  4(3Q13.31) WILD-TYPE     10     13      6      5
D29V5, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            6                             13
  CLUS_3                            6                              6
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q13.31) MUTATED        2      4      5      3      3      2
  DEL PEAK  4(3Q13.31) WILD-TYPE      8      0      3      3      5      4
                                vv
clus                             CLUS_7
  DEL PEAK  4(3Q13.31) MUTATED        3
  DEL PEAK  4(3Q13.31) WILD-TYPE     11
D29V6, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            4                              0
  CLUS_3                            5                              3
  CLUS_4                            3                              3
  CLUS_5                            3                              5
  CLUS_6                            2                              4
  CLUS_7                            3                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q13.31) MUTATED        7     10      5
  DEL PEAK  4(3Q13.31) WILD-TYPE      7     14     12
D29V7, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                           10                             14
  CLUS_3                            5                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED       10      2      9      1
  DEL PEAK  4(3Q13.31) WILD-TYPE     13      6      9      5
D29V8, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                            2                              6
  CLUS_3                            9                              9
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        3      7      5      7
  DEL PEAK  4(3Q13.31) WILD-TYPE      6      7      9     11
D29V9, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            7                              7
  CLUS_3                            5                              9
  CLUS_4                            7                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED       11      2      7      2
  DEL PEAK  4(3Q13.31) WILD-TYPE     13      5     10      5
D29V10, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                            2                              5
  CLUS_3                            7                             10
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  5(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q22.1) MUTATED       14     11     12
  DEL PEAK  5(4Q22.1) WILD-TYPE      7     11      1
D30V1, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          14                             7
  CLUS_2                          11                            11
  CLUS_3                          12                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED       16      5      9      7
  DEL PEAK  5(4Q22.1) WILD-TYPE      3      8      4      4
D30V2, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          16                             3
  CLUS_2                           5                             8
  CLUS_3                           9                             4
  CLUS_4                           7                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q22.1) MUTATED        9      8      5      3      6
  DEL PEAK  5(4Q22.1) WILD-TYPE      2      1      7      3      3
D30V3, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           9                             2
  CLUS_2                           8                             1
  CLUS_3                           5                             7
  CLUS_4                           3                             3
  CLUS_5                           6                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q22.1) MUTATED        7      6      4      6      4      1
  DEL PEAK  5(4Q22.1) WILD-TYPE      1      2      3      1      3      4
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q22.1) MUTATED        3
  DEL PEAK  5(4Q22.1) WILD-TYPE      2
D30V4, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           7                             1
  CLUS_2                           6                             2
  CLUS_3                           4                             3
  CLUS_4                           6                             1
  CLUS_5                           4                             3
  CLUS_6                           1                             4
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED       13      9      8      7
  DEL PEAK  5(4Q22.1) WILD-TYPE      2     10      4      3
D30V5, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          13                             2
  CLUS_2                           9                            10
  CLUS_3                           8                             4
  CLUS_4                           7                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q22.1) MUTATED        9      4      3      5      5      3
  DEL PEAK  5(4Q22.1) WILD-TYPE      1      0      5      1      3      3
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q22.1) MUTATED        8
  DEL PEAK  5(4Q22.1) WILD-TYPE      6
D30V6, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           9                             1
  CLUS_2                           4                             0
  CLUS_3                           3                             5
  CLUS_4                           5                             1
  CLUS_5                           5                             3
  CLUS_6                           3                             3
  CLUS_7                           8                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q22.1) MUTATED       10     20      7
  DEL PEAK  5(4Q22.1) WILD-TYPE      4      4     10
D30V7, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                          20                             4
  CLUS_3                           7                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED       14      7     14      2
  DEL PEAK  5(4Q22.1) WILD-TYPE      9      1      4      4
D30V8, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          14                             9
  CLUS_2                           7                             1
  CLUS_3                          14                             4
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED        9     10     11      7
  DEL PEAK  5(4Q22.1) WILD-TYPE      0      4      3     11
D30V9, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           9                             0
  CLUS_2                          10                             4
  CLUS_3                          11                             3
  CLUS_4                           7                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q22.1) MUTATED       15      6     14      2
  DEL PEAK  5(4Q22.1) WILD-TYPE      9      1      3      5
D30V10, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          15                             9
  CLUS_2                           6                             1
  CLUS_3                          14                             3
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       17     10     10
  DEL PEAK  6(4Q34.3) WILD-TYPE      4     12      3
D31V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          17                             4
  CLUS_2                          10                            12
  CLUS_3                          10                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       17      5      8      7
  DEL PEAK  6(4Q34.3) WILD-TYPE      2      8      5      4
D31V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          17                             2
  CLUS_2                           5                             8
  CLUS_3                           8                             5
  CLUS_4                           7                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED       10      6      6      4      6
  DEL PEAK  6(4Q34.3) WILD-TYPE      1      3      6      2      3
D31V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                             1
  CLUS_2                           6                             3
  CLUS_3                           6                             6
  CLUS_4                           4                             2
  CLUS_5                           6                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        7      7      6      4      4      1
  DEL PEAK  6(4Q34.3) WILD-TYPE      1      1      1      3      3      4
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q34.3) MUTATED        3
  DEL PEAK  6(4Q34.3) WILD-TYPE      2
D31V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                             1
  CLUS_2                           7                             1
  CLUS_3                           6                             1
  CLUS_4                           4                             3
  CLUS_5                           4                             3
  CLUS_6                           1                             4
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       13      8      8      8
  DEL PEAK  6(4Q34.3) WILD-TYPE      2     11      4      2
D31V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          13                             2
  CLUS_2                           8                            11
  CLUS_3                           8                             4
  CLUS_4                           8                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        9      4      3      6      4      3
  DEL PEAK  6(4Q34.3) WILD-TYPE      1      0      5      0      4      3
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q34.3) MUTATED        8
  DEL PEAK  6(4Q34.3) WILD-TYPE      6
D31V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           9                             1
  CLUS_2                           4                             0
  CLUS_3                           3                             5
  CLUS_4                           6                             0
  CLUS_5                           4                             4
  CLUS_6                           3                             3
  CLUS_7                           8                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       11     19      7
  DEL PEAK  6(4Q34.3) WILD-TYPE      3      5     10
D31V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                             3
  CLUS_2                          19                             5
  CLUS_3                           7                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       15      7     13      2
  DEL PEAK  6(4Q34.3) WILD-TYPE      8      1      5      4
D31V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          15                             8
  CLUS_2                           7                             1
  CLUS_3                          13                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        9     11     10      7
  DEL PEAK  6(4Q34.3) WILD-TYPE      0      3      4     11
D31V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           9                             0
  CLUS_2                          11                             3
  CLUS_3                          10                             4
  CLUS_4                           7                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       16      6     13      2
  DEL PEAK  6(4Q34.3) WILD-TYPE      8      1      4      5
D31V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          16                             8
  CLUS_2                           6                             1
  CLUS_3                          13                             4
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  7(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q12.1) MUTATED       11      7      8
  DEL PEAK  7(5Q12.1) WILD-TYPE     10     15      5
D32V1, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                          11                            10
  CLUS_2                           7                            15
  CLUS_3                           8                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q12.1) MUTATED       11      1      6      8
  DEL PEAK  7(5Q12.1) WILD-TYPE      8     12      7      3
D32V2, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                          11                             8
  CLUS_2                           1                            12
  CLUS_3                           6                             7
  CLUS_4                           8                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q12.1) MUTATED        5      4      5      4      2
  DEL PEAK  7(5Q12.1) WILD-TYPE      6      5      7      2      7
D32V3, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           4                             5
  CLUS_3                           5                             7
  CLUS_4                           4                             2
  CLUS_5                           2                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q12.1) MUTATED        6      4      2      3      4      1
  DEL PEAK  7(5Q12.1) WILD-TYPE      2      4      5      4      3      4
                               vv
clus                            CLUS_7
  DEL PEAK  7(5Q12.1) MUTATED        0
  DEL PEAK  7(5Q12.1) WILD-TYPE      5
D32V4, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           4                             4
  CLUS_3                           2                             5
  CLUS_4                           3                             4
  CLUS_5                           4                             3
  CLUS_6                           1                             4
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q12.1) MUTATED        8      7      5      6
  DEL PEAK  7(5Q12.1) WILD-TYPE      7     12      7      4
D32V5, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           8                             7
  CLUS_2                           7                            12
  CLUS_3                           5                             7
  CLUS_4                           6                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q12.1) MUTATED        6      2      2      3      5      4
  DEL PEAK  7(5Q12.1) WILD-TYPE      4      2      6      3      3      2
                               vv
clus                            CLUS_7
  DEL PEAK  7(5Q12.1) MUTATED        4
  DEL PEAK  7(5Q12.1) WILD-TYPE     10
D32V6, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           6                             4
  CLUS_2                           2                             2
  CLUS_3                           2                             6
  CLUS_4                           3                             3
  CLUS_5                           5                             3
  CLUS_6                           4                             2
  CLUS_7                           4                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q12.1) MUTATED        6     12      8
  DEL PEAK  7(5Q12.1) WILD-TYPE      8     12      9
D32V7, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                          12                            12
  CLUS_3                           8                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q12.1) MUTATED        9      4      8      5
  DEL PEAK  7(5Q12.1) WILD-TYPE     14      4     10      1
D32V8, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                           4                             4
  CLUS_3                           8                            10
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q12.1) MUTATED        5      8      7      6
  DEL PEAK  7(5Q12.1) WILD-TYPE      4      6      7     12
D32V9, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           8                             6
  CLUS_3                           7                             7
  CLUS_4                           6                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q12.1) MUTATED        9      4      8      5
  DEL PEAK  7(5Q12.1) WILD-TYPE     15      3      9      2
D32V10, multiclass
        clus
vv       DEL PEAK  7(5Q12.1) MUTATED DEL PEAK  7(5Q12.1) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                           4                             3
  CLUS_3                           8                             9
  CLUS_4                           5                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  8(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q26) MUTATED        2      3      5
  DEL PEAK  8(6Q26) WILD-TYPE     19     19      8
D33V1, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         2                          19
  CLUS_2                         3                          19
  CLUS_3                         5                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q26) MUTATED        3      3      2      2
  DEL PEAK  8(6Q26) WILD-TYPE     16     10     11      9
D33V2, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         3                          16
  CLUS_2                         3                          10
  CLUS_3                         2                          11
  CLUS_4                         2                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q26) MUTATED        0      3      1      3      2
  DEL PEAK  8(6Q26) WILD-TYPE     11      6     11      3      7
D33V3, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         0                          11
  CLUS_2                         3                           6
  CLUS_3                         1                          11
  CLUS_4                         3                           3
  CLUS_5                         2                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(6Q26) MUTATED        1      4      0      3      1      0      0
  DEL PEAK  8(6Q26) WILD-TYPE      7      4      7      4      6      5      5
D33V4, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                         4                           4
  CLUS_3                         0                           7
  CLUS_4                         3                           4
  CLUS_5                         1                           6
  CLUS_6                         0                           5
  CLUS_7                         0                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q26) MUTATED        2      1      4      3
  DEL PEAK  8(6Q26) WILD-TYPE     13     18      8      7
D33V5, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         2                          13
  CLUS_2                         1                          18
  CLUS_3                         4                           8
  CLUS_4                         3                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(6Q26) MUTATED        1      1      2      1      2      2      1
  DEL PEAK  8(6Q26) WILD-TYPE      9      3      6      5      6      4     13
D33V6, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         1                           9
  CLUS_2                         1                           3
  CLUS_3                         2                           6
  CLUS_4                         1                           5
  CLUS_5                         2                           6
  CLUS_6                         2                           4
  CLUS_7                         1                          13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q26) MUTATED        3      4      3
  DEL PEAK  8(6Q26) WILD-TYPE     11     20     14
D33V7, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         4                          20
  CLUS_3                         3                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q26) MUTATED        5      0      5      0
  DEL PEAK  8(6Q26) WILD-TYPE     18      8     13      6
D33V8, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         5                          18
  CLUS_2                         0                           8
  CLUS_3                         5                          13
  CLUS_4                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q26) MUTATED        1      5      3      1
  DEL PEAK  8(6Q26) WILD-TYPE      8      9     11     17
D33V9, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         5                           9
  CLUS_3                         3                          11
  CLUS_4                         1                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q26) MUTATED        6      0      4      0
  DEL PEAK  8(6Q26) WILD-TYPE     18      7     13      7
D33V10, multiclass
        clus
vv       DEL PEAK  8(6Q26) MUTATED DEL PEAK  8(6Q26) WILD-TYPE
  CLUS_1                         6                          18
  CLUS_2                         0                           7
  CLUS_3                         4                          13
  CLUS_4                         0                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  9(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(7Q11.22) MUTATED        3      5      4
  DEL PEAK  9(7Q11.22) WILD-TYPE     18     17      9
D34V1, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            5                             17
  CLUS_3                            4                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(7Q11.22) MUTATED        5      2      2      3
  DEL PEAK  9(7Q11.22) WILD-TYPE     14     11     11      8
D34V2, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            5                             14
  CLUS_2                            2                             11
  CLUS_3                            2                             11
  CLUS_4                            3                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(7Q11.22) MUTATED        3      1      3      0      2
  DEL PEAK  9(7Q11.22) WILD-TYPE      8      8      9      6      7
D34V3, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            1                              8
  CLUS_3                            3                              9
  CLUS_4                            0                              6
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(7Q11.22) MUTATED        3      1      1      0      2      1
  DEL PEAK  9(7Q11.22) WILD-TYPE      5      7      6      7      5      4
                                vv
clus                             CLUS_7
  DEL PEAK  9(7Q11.22) MUTATED        1
  DEL PEAK  9(7Q11.22) WILD-TYPE      4
D34V4, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            1                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            2                              5
  CLUS_6                            1                              4
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(7Q11.22) MUTATED        4      4      3      1
  DEL PEAK  9(7Q11.22) WILD-TYPE     11     15      9      9
D34V5, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            4                             15
  CLUS_3                            3                              9
  CLUS_4                            1                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(7Q11.22) MUTATED        4      0      2      1      1      1
  DEL PEAK  9(7Q11.22) WILD-TYPE      6      4      6      5      7      5
                                vv
clus                             CLUS_7
  DEL PEAK  9(7Q11.22) MUTATED        3
  DEL PEAK  9(7Q11.22) WILD-TYPE     11
D34V6, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            0                              4
  CLUS_3                            2                              6
  CLUS_4                            1                              5
  CLUS_5                            1                              7
  CLUS_6                            1                              5
  CLUS_7                            3                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(7Q11.22) MUTATED        2      6      4
  DEL PEAK  9(7Q11.22) WILD-TYPE     12     18     13
D34V7, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             18
  CLUS_3                            4                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(7Q11.22) MUTATED        4      3      3      2
  DEL PEAK  9(7Q11.22) WILD-TYPE     19      5     15      4
D34V8, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            3                              5
  CLUS_3                            3                             15
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(7Q11.22) MUTATED        3      0      5      4
  DEL PEAK  9(7Q11.22) WILD-TYPE      6     14      9     14
D34V9, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            0                             14
  CLUS_3                            5                              9
  CLUS_4                            4                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(7Q11.22) MUTATED        4      2      4      2
  DEL PEAK  9(7Q11.22) WILD-TYPE     20      5     13      5
D34V10, multiclass
        clus
vv       DEL PEAK  9(7Q11.22) MUTATED DEL PEAK  9(7Q11.22) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            2                              5
  CLUS_3                            4                             13
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 10(7Q36.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q36.2) MUTATED        7      6      7
  DEL PEAK 10(7Q36.2) WILD-TYPE     14     16      6
D35V1, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           7                            14
  CLUS_2                           6                            16
  CLUS_3                           7                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.2) MUTATED        9      2      4      5
  DEL PEAK 10(7Q36.2) WILD-TYPE     10     11      9      6
D35V2, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           9                            10
  CLUS_2                           2                            11
  CLUS_3                           4                             9
  CLUS_4                           5                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q36.2) MUTATED        5      2      5      1      3
  DEL PEAK 10(7Q36.2) WILD-TYPE      6      7      7      5      6
D35V3, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           5                             6
  CLUS_2                           2                             7
  CLUS_3                           5                             7
  CLUS_4                           1                             5
  CLUS_5                           3                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q36.2) MUTATED        5      2      3      1      3      1
  DEL PEAK 10(7Q36.2) WILD-TYPE      3      6      4      6      4      4
                               vv
clus                            CLUS_7
  DEL PEAK 10(7Q36.2) MUTATED        1
  DEL PEAK 10(7Q36.2) WILD-TYPE      4
D35V4, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                           2                             6
  CLUS_3                           3                             4
  CLUS_4                           1                             6
  CLUS_5                           3                             4
  CLUS_6                           1                             4
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.2) MUTATED        7      5      3      5
  DEL PEAK 10(7Q36.2) WILD-TYPE      8     14      9      5
D35V5, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           5                            14
  CLUS_3                           3                             9
  CLUS_4                           5                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q36.2) MUTATED        7      0      2      2      3      2
  DEL PEAK 10(7Q36.2) WILD-TYPE      3      4      6      4      5      4
                               vv
clus                            CLUS_7
  DEL PEAK 10(7Q36.2) MUTATED        4
  DEL PEAK 10(7Q36.2) WILD-TYPE     10
D35V6, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           7                             3
  CLUS_2                           0                             4
  CLUS_3                           2                             6
  CLUS_4                           2                             4
  CLUS_5                           3                             5
  CLUS_6                           2                             4
  CLUS_7                           4                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q36.2) MUTATED        2     12      6
  DEL PEAK 10(7Q36.2) WILD-TYPE     12     12     11
D35V7, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                          12                            12
  CLUS_3                           6                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.2) MUTATED        5      6      6      3
  DEL PEAK 10(7Q36.2) WILD-TYPE     18      2     12      3
D35V8, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           6                             2
  CLUS_3                           6                            12
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.2) MUTATED        5      4      6      5
  DEL PEAK 10(7Q36.2) WILD-TYPE      4     10      8     13
D35V9, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           4                            10
  CLUS_3                           6                             8
  CLUS_4                           5                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.2) MUTATED        5      5      7      3
  DEL PEAK 10(7Q36.2) WILD-TYPE     19      2     10      4
D35V10, multiclass
        clus
vv       DEL PEAK 10(7Q36.2) MUTATED DEL PEAK 10(7Q36.2) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           5                             2
  CLUS_3                           7                            10
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 11(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P21.3) MUTATED       14      8     10
  DEL PEAK 11(8P21.3) WILD-TYPE      7     14      3
D36V1, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                          14                             7
  CLUS_2                           8                            14
  CLUS_3                          10                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P21.3) MUTATED       13      7      7      5
  DEL PEAK 11(8P21.3) WILD-TYPE      6      6      6      6
D36V2, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                          13                             6
  CLUS_2                           7                             6
  CLUS_3                           7                             6
  CLUS_4                           5                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(8P21.3) MUTATED        8      3      7      4      6
  DEL PEAK 11(8P21.3) WILD-TYPE      3      6      5      2      3
D36V3, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           3                             6
  CLUS_3                           7                             5
  CLUS_4                           4                             2
  CLUS_5                           6                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(8P21.3) MUTATED        7      4      5      3      5      1
  DEL PEAK 11(8P21.3) WILD-TYPE      1      4      2      4      2      4
                               vv
clus                            CLUS_7
  DEL PEAK 11(8P21.3) MUTATED        3
  DEL PEAK 11(8P21.3) WILD-TYPE      2
D36V4, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                           7                             1
  CLUS_2                           4                             4
  CLUS_3                           5                             2
  CLUS_4                           3                             4
  CLUS_5                           5                             2
  CLUS_6                           1                             4
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P21.3) MUTATED       11      8      7      6
  DEL PEAK 11(8P21.3) WILD-TYPE      4     11      5      4
D36V5, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                          11                             4
  CLUS_2                           8                            11
  CLUS_3                           7                             5
  CLUS_4                           6                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(8P21.3) MUTATED        9      2      4      4      3      3
  DEL PEAK 11(8P21.3) WILD-TYPE      1      2      4      2      5      3
                               vv
clus                            CLUS_7
  DEL PEAK 11(8P21.3) MUTATED        7
  DEL PEAK 11(8P21.3) WILD-TYPE      7
D36V6, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                           9                             1
  CLUS_2                           2                             2
  CLUS_3                           4                             4
  CLUS_4                           4                             2
  CLUS_5                           3                             5
  CLUS_6                           3                             3
  CLUS_7                           7                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(8P21.3) MUTATED        8     15      9
  DEL PEAK 11(8P21.3) WILD-TYPE      6      9      8
D36V7, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                          15                             9
  CLUS_3                           9                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P21.3) MUTATED       12      7      9      4
  DEL PEAK 11(8P21.3) WILD-TYPE     11      1      9      2
D36V8, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                           7                             1
  CLUS_3                           9                             9
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P21.3) MUTATED        7      9      8      8
  DEL PEAK 11(8P21.3) WILD-TYPE      2      5      6     10
D36V9, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                           9                             5
  CLUS_3                           8                             6
  CLUS_4                           8                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(8P21.3) MUTATED       13      6      9      4
  DEL PEAK 11(8P21.3) WILD-TYPE     11      1      8      3
D36V10, multiclass
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                           6                             1
  CLUS_3                           9                             8
  CLUS_4                           4                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 12(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P23) MUTATED       15     10      9
  DEL PEAK 12(9P23) WILD-TYPE      6     12      4
D37V1, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        15                           6
  CLUS_2                        10                          12
  CLUS_3                         9                           4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED       13      6      8      7
  DEL PEAK 12(9P23) WILD-TYPE      6      7      5      4
D37V2, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        13                           6
  CLUS_2                         6                           7
  CLUS_3                         8                           5
  CLUS_4                         7                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9P23) MUTATED       11      5      7      4      2
  DEL PEAK 12(9P23) WILD-TYPE      0      4      5      2      7
D37V3, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        11                           0
  CLUS_2                         5                           4
  CLUS_3                         7                           5
  CLUS_4                         4                           2
  CLUS_5                         2                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(9P23) MUTATED        7      5      7      2      5      2      1
  DEL PEAK 12(9P23) WILD-TYPE      1      3      0      5      2      3      4
D37V4, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         7                           1
  CLUS_2                         5                           3
  CLUS_3                         7                           0
  CLUS_4                         2                           5
  CLUS_5                         5                           2
  CLUS_6                         2                           3
  CLUS_7                         1                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED        9     10     10      5
  DEL PEAK 12(9P23) WILD-TYPE      6      9      2      5
D37V5, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         9                           6
  CLUS_2                        10                           9
  CLUS_3                        10                           2
  CLUS_4                         5                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(9P23) MUTATED        8      1      4      5      3      4      9
  DEL PEAK 12(9P23) WILD-TYPE      2      3      4      1      5      2      5
D37V6, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         8                           2
  CLUS_2                         1                           3
  CLUS_3                         4                           4
  CLUS_4                         5                           1
  CLUS_5                         3                           5
  CLUS_6                         4                           2
  CLUS_7                         9                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P23) MUTATED        8     16     10
  DEL PEAK 12(9P23) WILD-TYPE      6      8      7
D37V7, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         8                           6
  CLUS_2                        16                           8
  CLUS_3                        10                           7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED       13      7     11      3
  DEL PEAK 12(9P23) WILD-TYPE     10      1      7      3
D37V8, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        13                          10
  CLUS_2                         7                           1
  CLUS_3                        11                           7
  CLUS_4                         3                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED        7      8      8     11
  DEL PEAK 12(9P23) WILD-TYPE      2      6      6      7
D37V9, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         7                           2
  CLUS_2                         8                           6
  CLUS_3                         8                           6
  CLUS_4                        11                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED       14      7     10      3
  DEL PEAK 12(9P23) WILD-TYPE     10      0      7      4
D37V10, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        14                          10
  CLUS_2                         7                           0
  CLUS_3                        10                           7
  CLUS_4                         3                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 13(9Q21.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       18     11     10
  DEL PEAK 13(9Q21.13) WILD-TYPE      3     11      3
D38V1, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           18                              3
  CLUS_2                           11                             11
  CLUS_3                           10                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED       13      8     11      7
  DEL PEAK 13(9Q21.13) WILD-TYPE      6      5      2      4
D38V2, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           13                              6
  CLUS_2                            8                              5
  CLUS_3                           11                              2
  CLUS_4                            7                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9Q21.13) MUTATED        9      5      9      4      6
  DEL PEAK 13(9Q21.13) WILD-TYPE      2      4      3      2      3
D38V3, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            9                              2
  CLUS_2                            5                              4
  CLUS_3                            9                              3
  CLUS_4                            4                              2
  CLUS_5                            6                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9Q21.13) MUTATED        8      6      4      4      5      3
  DEL PEAK 13(9Q21.13) WILD-TYPE      0      2      3      3      2      2
                                vv
clus                             CLUS_7
  DEL PEAK 13(9Q21.13) MUTATED        3
  DEL PEAK 13(9Q21.13) WILD-TYPE      2
D38V4, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            8                              0
  CLUS_2                            6                              2
  CLUS_3                            4                              3
  CLUS_4                            4                              3
  CLUS_5                            5                              2
  CLUS_6                            3                              2
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED       12     14      8      5
  DEL PEAK 13(9Q21.13) WILD-TYPE      3      5      4      5
D38V5, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           12                              3
  CLUS_2                           14                              5
  CLUS_3                            8                              4
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9Q21.13) MUTATED        9      2      5      4      4      3
  DEL PEAK 13(9Q21.13) WILD-TYPE      1      2      3      2      4      3
                                vv
clus                             CLUS_7
  DEL PEAK 13(9Q21.13) MUTATED       12
  DEL PEAK 13(9Q21.13) WILD-TYPE      2
D38V6, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            9                              1
  CLUS_2                            2                              2
  CLUS_3                            5                              3
  CLUS_4                            4                              2
  CLUS_5                            4                              4
  CLUS_6                            3                              3
  CLUS_7                           12                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9Q21.13) MUTATED       11     16     12
  DEL PEAK 13(9Q21.13) WILD-TYPE      3      8      5
D38V7, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           11                              3
  CLUS_2                           16                              8
  CLUS_3                           12                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED       18      7     10      4
  DEL PEAK 13(9Q21.13) WILD-TYPE      5      1      8      2
D38V8, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           18                              5
  CLUS_2                            7                              1
  CLUS_3                           10                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED        6     12      8     13
  DEL PEAK 13(9Q21.13) WILD-TYPE      3      2      6      5
D38V9, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                           12                              2
  CLUS_3                            8                              6
  CLUS_4                           13                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9Q21.13) MUTATED       19      6     10      4
  DEL PEAK 13(9Q21.13) WILD-TYPE      5      1      7      3
D38V10, multiclass
        clus
vv       DEL PEAK 13(9Q21.13) MUTATED DEL PEAK 13(9Q21.13) WILD-TYPE
  CLUS_1                           19                              5
  CLUS_2                            6                              1
  CLUS_3                           10                              7
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 14(9Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q33.3) MUTATED       16     13     10
  DEL PEAK 14(9Q33.3) WILD-TYPE      5      9      3
D39V1, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          13                             9
  CLUS_3                          10                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q33.3) MUTATED       14      8     10      7
  DEL PEAK 14(9Q33.3) WILD-TYPE      5      5      3      4
D39V2, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          14                             5
  CLUS_2                           8                             5
  CLUS_3                          10                             3
  CLUS_4                           7                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9Q33.3) MUTATED       11      5      8      5      5
  DEL PEAK 14(9Q33.3) WILD-TYPE      0      4      4      1      4
D39V3, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          11                             0
  CLUS_2                           5                             4
  CLUS_3                           8                             4
  CLUS_4                           5                             1
  CLUS_5                           5                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9Q33.3) MUTATED        8      6      7      4      5      2
  DEL PEAK 14(9Q33.3) WILD-TYPE      0      2      0      3      2      3
                               vv
clus                            CLUS_7
  DEL PEAK 14(9Q33.3) MUTATED        2
  DEL PEAK 14(9Q33.3) WILD-TYPE      3
D39V4, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                           8                             0
  CLUS_2                           6                             2
  CLUS_3                           7                             0
  CLUS_4                           4                             3
  CLUS_5                           5                             2
  CLUS_6                           2                             3
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q33.3) MUTATED       13     12      9      5
  DEL PEAK 14(9Q33.3) WILD-TYPE      2      7      3      5
D39V5, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          13                             2
  CLUS_2                          12                             7
  CLUS_3                           9                             3
  CLUS_4                           5                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9Q33.3) MUTATED       10      2      5      5      4      3
  DEL PEAK 14(9Q33.3) WILD-TYPE      0      2      3      1      4      3
                               vv
clus                            CLUS_7
  DEL PEAK 14(9Q33.3) MUTATED       10
  DEL PEAK 14(9Q33.3) WILD-TYPE      4
D39V6, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          10                             0
  CLUS_2                           2                             2
  CLUS_3                           5                             3
  CLUS_4                           5                             1
  CLUS_5                           4                             4
  CLUS_6                           3                             3
  CLUS_7                          10                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q33.3) MUTATED       11     17     11
  DEL PEAK 14(9Q33.3) WILD-TYPE      3      7      6
D39V7, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          11                             3
  CLUS_2                          17                             7
  CLUS_3                          11                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q33.3) MUTATED       16      8     10      5
  DEL PEAK 14(9Q33.3) WILD-TYPE      7      0      8      1
D39V8, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          16                             7
  CLUS_2                           8                             0
  CLUS_3                          10                             8
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q33.3) MUTATED        8     11      8     12
  DEL PEAK 14(9Q33.3) WILD-TYPE      1      3      6      6
D39V9, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                           8                             1
  CLUS_2                          11                             3
  CLUS_3                           8                             6
  CLUS_4                          12                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q33.3) MUTATED       17      7     10      5
  DEL PEAK 14(9Q33.3) WILD-TYPE      7      0      7      2
D39V10, multiclass
        clus
vv       DEL PEAK 14(9Q33.3) MUTATED DEL PEAK 14(9Q33.3) WILD-TYPE
  CLUS_1                          17                             7
  CLUS_2                           7                             0
  CLUS_3                          10                             7
  CLUS_4                           5                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 15(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       10      8      2
  DEL PEAK 15(10Q23.31) WILD-TYPE     11     14     11
D40V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            10                              11
  CLUS_2                             8                              14
  CLUS_3                             2                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED        9      4      6      1
  DEL PEAK 15(10Q23.31) WILD-TYPE     10      9      7     10
D40V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             9                              10
  CLUS_2                             4                               9
  CLUS_3                             6                               7
  CLUS_4                             1                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10Q23.31) MUTATED        5      3      4      3      3
  DEL PEAK 15(10Q23.31) WILD-TYPE      6      6      8      3      6
D40V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             5                               6
  CLUS_2                             3                               6
  CLUS_3                             4                               8
  CLUS_4                             3                               3
  CLUS_5                             3                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.31) MUTATED        3      4      3      2      3      1
  DEL PEAK 15(10Q23.31) WILD-TYPE      5      4      4      5      4      4
                                 vv
clus                              CLUS_7
  DEL PEAK 15(10Q23.31) MUTATED        2
  DEL PEAK 15(10Q23.31) WILD-TYPE      3
D40V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                             4                               4
  CLUS_3                             3                               4
  CLUS_4                             2                               5
  CLUS_5                             3                               4
  CLUS_6                             1                               4
  CLUS_7                             2                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED        5      8      2      5
  DEL PEAK 15(10Q23.31) WILD-TYPE     10     11     10      5
D40V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             5                              10
  CLUS_2                             8                              11
  CLUS_3                             2                              10
  CLUS_4                             5                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.31) MUTATED        3      3      4      1      3      0
  DEL PEAK 15(10Q23.31) WILD-TYPE      7      1      4      5      5      6
                                 vv
clus                              CLUS_7
  DEL PEAK 15(10Q23.31) MUTATED        6
  DEL PEAK 15(10Q23.31) WILD-TYPE      8
D40V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             3                               1
  CLUS_3                             4                               4
  CLUS_4                             1                               5
  CLUS_5                             3                               5
  CLUS_6                             0                               6
  CLUS_7                             6                               8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        6      8      6
  DEL PEAK 15(10Q23.31) WILD-TYPE      8     16     11
D40V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             6                               8
  CLUS_2                             8                              16
  CLUS_3                             6                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED       10      2      6      2
  DEL PEAK 15(10Q23.31) WILD-TYPE     13      6     12      4
D40V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            10                              13
  CLUS_2                             2                               6
  CLUS_3                             6                              12
  CLUS_4                             2                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED        4      5      3      8
  DEL PEAK 15(10Q23.31) WILD-TYPE      5      9     11     10
D40V9, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             5                               9
  CLUS_3                             3                              11
  CLUS_4                             8                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10Q23.31) MUTATED       10      2      5      3
  DEL PEAK 15(10Q23.31) WILD-TYPE     14      5     12      4
D40V10, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            10                              14
  CLUS_2                             2                               5
  CLUS_3                             5                              12
  CLUS_4                             3                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 16(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q14.1) MUTATED        8      8     10
  DEL PEAK 16(11Q14.1) WILD-TYPE     13     14      3
D41V1, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                            8                             14
  CLUS_3                           10                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        9      4      7      6
  DEL PEAK 16(11Q14.1) WILD-TYPE     10      9      6      5
D41V2, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            9                             10
  CLUS_2                            4                              9
  CLUS_3                            7                              6
  CLUS_4                            6                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11Q14.1) MUTATED        4      7      4      1      4
  DEL PEAK 16(11Q14.1) WILD-TYPE      7      2      8      5      5
D41V3, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            7                              2
  CLUS_3                            4                              8
  CLUS_4                            1                              5
  CLUS_5                            4                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(11Q14.1) MUTATED        3      2      3      5      4      0
  DEL PEAK 16(11Q14.1) WILD-TYPE      5      6      4      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 16(11Q14.1) MUTATED        3
  DEL PEAK 16(11Q14.1) WILD-TYPE      2
D41V4, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            2                              6
  CLUS_3                            3                              4
  CLUS_4                            5                              2
  CLUS_5                            4                              3
  CLUS_6                            0                              5
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        6      9      5      6
  DEL PEAK 16(11Q14.1) WILD-TYPE      9     10      7      4
D41V5, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            9                             10
  CLUS_3                            5                              7
  CLUS_4                            6                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(11Q14.1) MUTATED        4      3      3      3      3      3
  DEL PEAK 16(11Q14.1) WILD-TYPE      6      1      5      3      5      3
                                vv
clus                             CLUS_7
  DEL PEAK 16(11Q14.1) MUTATED        7
  DEL PEAK 16(11Q14.1) WILD-TYPE      7
D41V6, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            3                              1
  CLUS_3                            3                              5
  CLUS_4                            3                              3
  CLUS_5                            3                              5
  CLUS_6                            3                              3
  CLUS_7                            7                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q14.1) MUTATED        5     14      7
  DEL PEAK 16(11Q14.1) WILD-TYPE      9     10     10
D41V7, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                           14                             10
  CLUS_3                            7                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        8      3     11      4
  DEL PEAK 16(11Q14.1) WILD-TYPE     15      5      7      2
D41V8, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                            3                              5
  CLUS_3                           11                              7
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        4      6     10      6
  DEL PEAK 16(11Q14.1) WILD-TYPE      5      8      4     12
D41V9, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            6                              8
  CLUS_3                           10                              4
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        8      2     12      4
  DEL PEAK 16(11Q14.1) WILD-TYPE     16      5      5      3
D41V10, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                            2                              5
  CLUS_3                           12                              5
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 17(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11Q23.2) MUTATED        8     10      8
  DEL PEAK 17(11Q23.2) WILD-TYPE     13     12      5
D42V1, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           10                             12
  CLUS_3                            8                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q23.2) MUTATED        9      5      6      6
  DEL PEAK 17(11Q23.2) WILD-TYPE     10      8      7      5
D42V2, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            9                             10
  CLUS_2                            5                              8
  CLUS_3                            6                              7
  CLUS_4                            6                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11Q23.2) MUTATED        4      6      4      3      4
  DEL PEAK 17(11Q23.2) WILD-TYPE      7      3      8      3      5
D42V3, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            6                              3
  CLUS_3                            4                              8
  CLUS_4                            3                              3
  CLUS_5                            4                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11Q23.2) MUTATED        2      4      3      5      4      0
  DEL PEAK 17(11Q23.2) WILD-TYPE      6      4      4      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 17(11Q23.2) MUTATED        3
  DEL PEAK 17(11Q23.2) WILD-TYPE      2
D42V4, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            4                              4
  CLUS_3                            3                              4
  CLUS_4                            5                              2
  CLUS_5                            4                              3
  CLUS_6                            0                              5
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q23.2) MUTATED        6      7      5      8
  DEL PEAK 17(11Q23.2) WILD-TYPE      9     12      7      2
D42V5, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                            7                             12
  CLUS_3                            5                              7
  CLUS_4                            8                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11Q23.2) MUTATED        3      3      4      3      4      3
  DEL PEAK 17(11Q23.2) WILD-TYPE      7      1      4      3      4      3
                                vv
clus                             CLUS_7
  DEL PEAK 17(11Q23.2) MUTATED        6
  DEL PEAK 17(11Q23.2) WILD-TYPE      8
D42V6, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            3                              1
  CLUS_3                            4                              4
  CLUS_4                            3                              3
  CLUS_5                            4                              4
  CLUS_6                            3                              3
  CLUS_7                            6                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11Q23.2) MUTATED        7     13      6
  DEL PEAK 17(11Q23.2) WILD-TYPE      7     11     11
D42V7, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                           13                             11
  CLUS_3                            6                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q23.2) MUTATED       10      3     10      3
  DEL PEAK 17(11Q23.2) WILD-TYPE     13      5      8      3
D42V8, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                            3                              5
  CLUS_3                           10                              8
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q23.2) MUTATED        3      9      9      5
  DEL PEAK 17(11Q23.2) WILD-TYPE      6      5      5     13
D42V9, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            9                              5
  CLUS_3                            9                              5
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11Q23.2) MUTATED       10      2     11      3
  DEL PEAK 17(11Q23.2) WILD-TYPE     14      5      6      4
D42V10, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            2                              5
  CLUS_3                           11                              6
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 18(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12Q23.1) MUTATED        6      8      6
  DEL PEAK 18(12Q23.1) WILD-TYPE     15     14      7
D43V1, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            8                             14
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q23.1) MUTATED        7      5      5      3
  DEL PEAK 18(12Q23.1) WILD-TYPE     12      8      8      8
D43V2, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            7                             12
  CLUS_2                            5                              8
  CLUS_3                            5                              8
  CLUS_4                            3                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(12Q23.1) MUTATED        3      4      3      5      2
  DEL PEAK 18(12Q23.1) WILD-TYPE      8      5      9      1      7
D43V3, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            4                              5
  CLUS_3                            3                              9
  CLUS_4                            5                              1
  CLUS_5                            2                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12Q23.1) MUTATED        1      6      4      3      2      1
  DEL PEAK 18(12Q23.1) WILD-TYPE      7      2      3      4      5      4
                                vv
clus                             CLUS_7
  DEL PEAK 18(12Q23.1) MUTATED        0
  DEL PEAK 18(12Q23.1) WILD-TYPE      5
D43V4, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            6                              2
  CLUS_3                            4                              3
  CLUS_4                            3                              4
  CLUS_5                            2                              5
  CLUS_6                            1                              4
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q23.1) MUTATED        4      6      5      5
  DEL PEAK 18(12Q23.1) WILD-TYPE     11     13      7      5
D43V5, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            6                             13
  CLUS_3                            5                              7
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12Q23.1) MUTATED        2      1      4      2      4      3
  DEL PEAK 18(12Q23.1) WILD-TYPE      8      3      4      4      4      3
                                vv
clus                             CLUS_7
  DEL PEAK 18(12Q23.1) MUTATED        4
  DEL PEAK 18(12Q23.1) WILD-TYPE     10
D43V6, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            1                              3
  CLUS_3                            4                              4
  CLUS_4                            2                              4
  CLUS_5                            4                              4
  CLUS_6                            3                              3
  CLUS_7                            4                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12Q23.1) MUTATED        5      9      6
  DEL PEAK 18(12Q23.1) WILD-TYPE      9     15     11
D43V7, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            9                             15
  CLUS_3                            6                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q23.1) MUTATED        6      2      9      3
  DEL PEAK 18(12Q23.1) WILD-TYPE     17      6      9      3
D43V8, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                            2                              6
  CLUS_3                            9                              9
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q23.1) MUTATED        2      7      5      6
  DEL PEAK 18(12Q23.1) WILD-TYPE      7      7      9     12
D43V9, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            7                              7
  CLUS_3                            5                              9
  CLUS_4                            6                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12Q23.1) MUTATED        7      2      7      4
  DEL PEAK 18(12Q23.1) WILD-TYPE     17      5     10      3
D43V10, multiclass
        clus
vv       DEL PEAK 18(12Q23.1) MUTATED DEL PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            2                              5
  CLUS_3                            7                             10
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 19(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q24.31) MUTATED        8      9      3
  DEL PEAK 19(12Q24.31) WILD-TYPE     13     13     10
D44V1, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             8                              13
  CLUS_2                             9                              13
  CLUS_3                             3                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q24.31) MUTATED        8      5      3      4
  DEL PEAK 19(12Q24.31) WILD-TYPE     11      8     10      7
D44V2, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             8                              11
  CLUS_2                             5                               8
  CLUS_3                             3                              10
  CLUS_4                             4                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(12Q24.31) MUTATED        4      5      1      5      3
  DEL PEAK 19(12Q24.31) WILD-TYPE      7      4     11      1      6
D44V3, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             4                               7
  CLUS_2                             5                               4
  CLUS_3                             1                              11
  CLUS_4                             5                               1
  CLUS_5                             3                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(12Q24.31) MUTATED        2      7      5      3      1      0
  DEL PEAK 19(12Q24.31) WILD-TYPE      6      1      2      4      6      5
                                 vv
clus                              CLUS_7
  DEL PEAK 19(12Q24.31) MUTATED        0
  DEL PEAK 19(12Q24.31) WILD-TYPE      5
D44V4, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                             7                               1
  CLUS_3                             5                               2
  CLUS_4                             3                               4
  CLUS_5                             1                               6
  CLUS_6                             0                               5
  CLUS_7                             0                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q24.31) MUTATED        6      4      7      3
  DEL PEAK 19(12Q24.31) WILD-TYPE      9     15      5      7
D44V5, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             6                               9
  CLUS_2                             4                              15
  CLUS_3                             7                               5
  CLUS_4                             3                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(12Q24.31) MUTATED        3      2      4      3      2      4
  DEL PEAK 19(12Q24.31) WILD-TYPE      7      2      4      3      6      2
                                 vv
clus                              CLUS_7
  DEL PEAK 19(12Q24.31) MUTATED        2
  DEL PEAK 19(12Q24.31) WILD-TYPE     12
D44V6, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             2                               2
  CLUS_3                             4                               4
  CLUS_4                             3                               3
  CLUS_5                             2                               6
  CLUS_6                             4                               2
  CLUS_7                             2                              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q24.31) MUTATED        6      9      5
  DEL PEAK 19(12Q24.31) WILD-TYPE      8     15     12
D44V7, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             6                               8
  CLUS_2                             9                              15
  CLUS_3                             5                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q24.31) MUTATED        7      3      8      2
  DEL PEAK 19(12Q24.31) WILD-TYPE     16      5     10      4
D44V8, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             7                              16
  CLUS_2                             3                               5
  CLUS_3                             8                              10
  CLUS_4                             2                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q24.31) MUTATED        5      7      4      4
  DEL PEAK 19(12Q24.31) WILD-TYPE      4      7     10     14
D44V9, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             5                               4
  CLUS_2                             7                               7
  CLUS_3                             4                              10
  CLUS_4                             4                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q24.31) MUTATED        8      3      6      3
  DEL PEAK 19(12Q24.31) WILD-TYPE     16      4     11      4
D44V10, multiclass
        clus
vv       DEL PEAK 19(12Q24.31) MUTATED DEL PEAK 19(12Q24.31) WILD-TYPE
  CLUS_1                             8                              16
  CLUS_2                             3                               4
  CLUS_3                             6                              11
  CLUS_4                             3                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 20(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       10     10     10
  DEL PEAK 20(13Q12.11) WILD-TYPE     11     12      3
D45V1, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            10                              11
  CLUS_2                            10                              12
  CLUS_3                            10                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED        8      8     10      4
  DEL PEAK 20(13Q12.11) WILD-TYPE     11      5      3      7
D45V2, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             8                              11
  CLUS_2                             8                               5
  CLUS_3                            10                               3
  CLUS_4                             4                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.11) MUTATED        3      6      6      4      4
  DEL PEAK 20(13Q12.11) WILD-TYPE      8      3      6      2      5
D45V3, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             3                               8
  CLUS_2                             6                               3
  CLUS_3                             6                               6
  CLUS_4                             4                               2
  CLUS_5                             4                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q12.11) MUTATED        2      6      1      6      3      3
  DEL PEAK 20(13Q12.11) WILD-TYPE      6      2      6      1      4      2
                                 vv
clus                              CLUS_7
  DEL PEAK 20(13Q12.11) MUTATED        2
  DEL PEAK 20(13Q12.11) WILD-TYPE      3
D45V4, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                             6                               2
  CLUS_3                             1                               6
  CLUS_4                             6                               1
  CLUS_5                             3                               4
  CLUS_6                             3                               2
  CLUS_7                             2                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED        5     11      6      8
  DEL PEAK 20(13Q12.11) WILD-TYPE     10      8      6      2
D45V5, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             5                              10
  CLUS_2                            11                               8
  CLUS_3                             6                               6
  CLUS_4                             8                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q12.11) MUTATED        2      3      5      3      6      2
  DEL PEAK 20(13Q12.11) WILD-TYPE      8      1      3      3      2      4
                                 vv
clus                              CLUS_7
  DEL PEAK 20(13Q12.11) MUTATED        9
  DEL PEAK 20(13Q12.11) WILD-TYPE      5
D45V6, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             2                               8
  CLUS_2                             3                               1
  CLUS_3                             5                               3
  CLUS_4                             3                               3
  CLUS_5                             6                               2
  CLUS_6                             2                               4
  CLUS_7                             9                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       10     11      9
  DEL PEAK 20(13Q12.11) WILD-TYPE      4     13      8
D45V7, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            10                               4
  CLUS_2                            11                              13
  CLUS_3                             9                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED       16      1     11      2
  DEL PEAK 20(13Q12.11) WILD-TYPE      7      7      7      4
D45V8, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            16                               7
  CLUS_2                             1                               7
  CLUS_3                            11                               7
  CLUS_4                             2                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED        2     10      7     11
  DEL PEAK 20(13Q12.11) WILD-TYPE      7      4      7      7
D45V9, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             2                               7
  CLUS_2                            10                               4
  CLUS_3                             7                               7
  CLUS_4                            11                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED       17      1      9      3
  DEL PEAK 20(13Q12.11) WILD-TYPE      7      6      8      4
D45V10, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            17                               7
  CLUS_2                             1                               6
  CLUS_3                             9                               8
  CLUS_4                             3                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       11     11     10
  DEL PEAK 21(13Q14.2) WILD-TYPE     10     11      3
D46V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           11                             11
  CLUS_3                           10                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       10      8     11      3
  DEL PEAK 21(13Q14.2) WILD-TYPE      9      5      2      8
D46V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           10                              9
  CLUS_2                            8                              5
  CLUS_3                           11                              2
  CLUS_4                            3                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED        3      5      6      5      6
  DEL PEAK 21(13Q14.2) WILD-TYPE      8      4      6      1      3
D46V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            5                              4
  CLUS_3                            6                              6
  CLUS_4                            5                              1
  CLUS_5                            6                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED        3      5      2      6      3      3
  DEL PEAK 21(13Q14.2) WILD-TYPE      5      3      5      1      4      2
                                vv
clus                             CLUS_7
  DEL PEAK 21(13Q14.2) MUTATED        3
  DEL PEAK 21(13Q14.2) WILD-TYPE      2
D46V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            5                              3
  CLUS_3                            2                              5
  CLUS_4                            6                              1
  CLUS_5                            3                              4
  CLUS_6                            3                              2
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        6     14      4      8
  DEL PEAK 21(13Q14.2) WILD-TYPE      9      5      8      2
D46V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                           14                              5
  CLUS_3                            4                              8
  CLUS_4                            8                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED        3      3      5      1      7      2
  DEL PEAK 21(13Q14.2) WILD-TYPE      7      1      3      5      1      4
                                vv
clus                             CLUS_7
  DEL PEAK 21(13Q14.2) MUTATED       11
  DEL PEAK 21(13Q14.2) WILD-TYPE      3
D46V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            3                              1
  CLUS_3                            5                              3
  CLUS_4                            1                              5
  CLUS_5                            7                              1
  CLUS_6                            2                              4
  CLUS_7                           11                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED        9     11     12
  DEL PEAK 21(13Q14.2) WILD-TYPE      5     13      5
D46V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                           11                             13
  CLUS_3                           12                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       17      3      8      4
  DEL PEAK 21(13Q14.2) WILD-TYPE      6      5     10      2
D46V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           17                              6
  CLUS_2                            3                              5
  CLUS_3                            8                             10
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        4      9      5     14
  DEL PEAK 21(13Q14.2) WILD-TYPE      5      5      9      4
D46V9, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            9                              5
  CLUS_3                            5                              9
  CLUS_4                           14                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       17      3      7      5
  DEL PEAK 21(13Q14.2) WILD-TYPE      7      4     10      2
D46V10, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                            3                              4
  CLUS_3                            7                             10
  CLUS_4                            5                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 22(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q21.1) MUTATED       12     10      6
  DEL PEAK 22(14Q21.1) WILD-TYPE      9     12      7
D47V1, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           10                             12
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q21.1) MUTATED       12      6      3      7
  DEL PEAK 22(14Q21.1) WILD-TYPE      7      7     10      4
D47V2, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                           12                              7
  CLUS_2                            6                              7
  CLUS_3                            3                             10
  CLUS_4                            7                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q21.1) MUTATED        8      4      6      2      5
  DEL PEAK 22(14Q21.1) WILD-TYPE      3      5      6      4      4
D47V3, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                            4                              5
  CLUS_3                            6                              6
  CLUS_4                            2                              4
  CLUS_5                            5                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q21.1) MUTATED        7      3      4      4      5      1
  DEL PEAK 22(14Q21.1) WILD-TYPE      1      5      3      3      2      4
                                vv
clus                             CLUS_7
  DEL PEAK 22(14Q21.1) MUTATED        1
  DEL PEAK 22(14Q21.1) WILD-TYPE      4
D47V4, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            3                              5
  CLUS_3                            4                              3
  CLUS_4                            4                              3
  CLUS_5                            5                              2
  CLUS_6                            1                              4
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q21.1) MUTATED       10      5      8      5
  DEL PEAK 22(14Q21.1) WILD-TYPE      5     14      4      5
D47V5, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                           10                              5
  CLUS_2                            5                             14
  CLUS_3                            8                              4
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q21.1) MUTATED        8      2      5      4      2      4
  DEL PEAK 22(14Q21.1) WILD-TYPE      2      2      3      2      6      2
                                vv
clus                             CLUS_7
  DEL PEAK 22(14Q21.1) MUTATED        3
  DEL PEAK 22(14Q21.1) WILD-TYPE     11
D47V6, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                            8                              2
  CLUS_2                            2                              2
  CLUS_3                            5                              3
  CLUS_4                            4                              2
  CLUS_5                            2                              6
  CLUS_6                            4                              2
  CLUS_7                            3                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q21.1) MUTATED        8     14      6
  DEL PEAK 22(14Q21.1) WILD-TYPE      6     10     11
D47V7, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           14                             10
  CLUS_3                            6                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q21.1) MUTATED       10      6      8      4
  DEL PEAK 22(14Q21.1) WILD-TYPE     13      2     10      2
D47V8, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                            6                              2
  CLUS_3                            8                             10
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q21.1) MUTATED        8      6      7      7
  DEL PEAK 22(14Q21.1) WILD-TYPE      1      8      7     11
D47V9, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                            6                              8
  CLUS_3                            7                              7
  CLUS_4                            7                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q21.1) MUTATED       10      5      8      5
  DEL PEAK 22(14Q21.1) WILD-TYPE     14      2      9      2
D47V10, multiclass
        clus
vv       DEL PEAK 22(14Q21.1) MUTATED DEL PEAK 22(14Q21.1) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            5                              2
  CLUS_3                            8                              9
  CLUS_4                            5                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 23(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q15.1) MUTATED       17     14     12
  DEL PEAK 23(15Q15.1) WILD-TYPE      4      8      1
D48V1, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           17                              4
  CLUS_2                           14                              8
  CLUS_3                           12                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q15.1) MUTATED       18      7     11      7
  DEL PEAK 23(15Q15.1) WILD-TYPE      1      6      2      4
D48V2, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           18                              1
  CLUS_2                            7                              6
  CLUS_3                           11                              2
  CLUS_4                            7                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q15.1) MUTATED       10      6      8      5      5
  DEL PEAK 23(15Q15.1) WILD-TYPE      1      3      4      1      4
D48V3, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            6                              3
  CLUS_3                            8                              4
  CLUS_4                            5                              1
  CLUS_5                            5                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q15.1) MUTATED        8      7      4      6      5      3
  DEL PEAK 23(15Q15.1) WILD-TYPE      0      1      3      1      2      2
                                vv
clus                             CLUS_7
  DEL PEAK 23(15Q15.1) MUTATED        1
  DEL PEAK 23(15Q15.1) WILD-TYPE      4
D48V4, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                            8                              0
  CLUS_2                            7                              1
  CLUS_3                            4                              3
  CLUS_4                            6                              1
  CLUS_5                            5                              2
  CLUS_6                            3                              2
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q15.1) MUTATED       13     13      8      9
  DEL PEAK 23(15Q15.1) WILD-TYPE      2      6      4      1
D48V5, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           13                              2
  CLUS_2                           13                              6
  CLUS_3                            8                              4
  CLUS_4                            9                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q15.1) MUTATED        9      4      5      5      6      4
  DEL PEAK 23(15Q15.1) WILD-TYPE      1      0      3      1      2      2
                                vv
clus                             CLUS_7
  DEL PEAK 23(15Q15.1) MUTATED       10
  DEL PEAK 23(15Q15.1) WILD-TYPE      4
D48V6, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                            9                              1
  CLUS_2                            4                              0
  CLUS_3                            5                              3
  CLUS_4                            5                              1
  CLUS_5                            6                              2
  CLUS_6                            4                              2
  CLUS_7                           10                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q15.1) MUTATED       13     20     10
  DEL PEAK 23(15Q15.1) WILD-TYPE      1      4      7
D48V7, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           13                              1
  CLUS_2                           20                              4
  CLUS_3                           10                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q15.1) MUTATED       19      7     14      3
  DEL PEAK 23(15Q15.1) WILD-TYPE      4      1      4      3
D48V8, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           19                              4
  CLUS_2                            7                              1
  CLUS_3                           14                              4
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q15.1) MUTATED        9     12     11     11
  DEL PEAK 23(15Q15.1) WILD-TYPE      0      2      3      7
D48V9, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                            9                              0
  CLUS_2                           12                              2
  CLUS_3                           11                              3
  CLUS_4                           11                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q15.1) MUTATED       20      7     12      4
  DEL PEAK 23(15Q15.1) WILD-TYPE      4      0      5      3
D48V10, multiclass
        clus
vv       DEL PEAK 23(15Q15.1) MUTATED DEL PEAK 23(15Q15.1) WILD-TYPE
  CLUS_1                           20                              4
  CLUS_2                            7                              0
  CLUS_3                           12                              5
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 24(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16P13.3) MUTATED       10     14      9
  DEL PEAK 24(16P13.3) WILD-TYPE     11      8      4
D49V1, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           10                             11
  CLUS_2                           14                              8
  CLUS_3                            9                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16P13.3) MUTATED       13      7      8      5
  DEL PEAK 24(16P13.3) WILD-TYPE      6      6      5      6
D49V2, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           13                              6
  CLUS_2                            7                              6
  CLUS_3                            8                              5
  CLUS_4                            5                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(16P13.3) MUTATED        5      7      7      3      5
  DEL PEAK 24(16P13.3) WILD-TYPE      6      2      5      3      4
D49V3, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            7                              2
  CLUS_3                            7                              5
  CLUS_4                            3                              3
  CLUS_5                            5                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16P13.3) MUTATED        4      6      3      6      5      2
  DEL PEAK 24(16P13.3) WILD-TYPE      4      2      4      1      2      3
                                vv
clus                             CLUS_7
  DEL PEAK 24(16P13.3) MUTATED        1
  DEL PEAK 24(16P13.3) WILD-TYPE      4
D49V4, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            6                              2
  CLUS_3                            3                              4
  CLUS_4                            6                              1
  CLUS_5                            5                              2
  CLUS_6                            2                              3
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16P13.3) MUTATED        9     11      5      8
  DEL PEAK 24(16P13.3) WILD-TYPE      6      8      7      2
D49V5, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            9                              6
  CLUS_2                           11                              8
  CLUS_3                            5                              7
  CLUS_4                            8                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16P13.3) MUTATED        5      4      6      4      5      1
  DEL PEAK 24(16P13.3) WILD-TYPE      5      0      2      2      3      5
                                vv
clus                             CLUS_7
  DEL PEAK 24(16P13.3) MUTATED        8
  DEL PEAK 24(16P13.3) WILD-TYPE      6
D49V6, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            5                              5
  CLUS_2                            4                              0
  CLUS_3                            6                              2
  CLUS_4                            4                              2
  CLUS_5                            5                              3
  CLUS_6                            1                              5
  CLUS_7                            8                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16P13.3) MUTATED       12     15      6
  DEL PEAK 24(16P13.3) WILD-TYPE      2      9     11
D49V7, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           12                              2
  CLUS_2                           15                              9
  CLUS_3                            6                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16P13.3) MUTATED       13      3     13      4
  DEL PEAK 24(16P13.3) WILD-TYPE     10      5      5      2
D49V8, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           13                             10
  CLUS_2                            3                              5
  CLUS_3                           13                              5
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16P13.3) MUTATED        5     10      9      9
  DEL PEAK 24(16P13.3) WILD-TYPE      4      4      5      9
D49V9, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                           10                              4
  CLUS_3                            9                              5
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16P13.3) MUTATED       14      3     11      5
  DEL PEAK 24(16P13.3) WILD-TYPE     10      4      6      2
D49V10, multiclass
        clus
vv       DEL PEAK 24(16P13.3) MUTATED DEL PEAK 24(16P13.3) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            3                              4
  CLUS_3                           11                              6
  CLUS_4                            5                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 25(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       12     18      9
  DEL PEAK 25(16Q23.1) WILD-TYPE      9      4      4
D50V1, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           18                              4
  CLUS_3                            9                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       15     11      8      5
  DEL PEAK 25(16Q23.1) WILD-TYPE      4      2      5      6
D50V2, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           15                              4
  CLUS_2                           11                              2
  CLUS_3                            8                              5
  CLUS_4                            5                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED        8      7      8      6      5
  DEL PEAK 25(16Q23.1) WILD-TYPE      3      2      4      0      4
D50V3, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                            7                              2
  CLUS_3                            8                              4
  CLUS_4                            6                              0
  CLUS_5                            5                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16Q23.1) MUTATED        5      8      5      5      6      3
  DEL PEAK 25(16Q23.1) WILD-TYPE      3      0      2      2      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 25(16Q23.1) MUTATED        2
  DEL PEAK 25(16Q23.1) WILD-TYPE      3
D50V4, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            8                              0
  CLUS_3                            5                              2
  CLUS_4                            5                              2
  CLUS_5                            6                              1
  CLUS_6                            3                              2
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       12     13      7      7
  DEL PEAK 25(16Q23.1) WILD-TYPE      3      6      5      3
D50V5, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           12                              3
  CLUS_2                           13                              6
  CLUS_3                            7                              5
  CLUS_4                            7                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16Q23.1) MUTATED        7      4      7      4      6      2
  DEL PEAK 25(16Q23.1) WILD-TYPE      3      0      1      2      2      4
                                vv
clus                             CLUS_7
  DEL PEAK 25(16Q23.1) MUTATED        9
  DEL PEAK 25(16Q23.1) WILD-TYPE      5
D50V6, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            4                              0
  CLUS_3                            7                              1
  CLUS_4                            4                              2
  CLUS_5                            6                              2
  CLUS_6                            2                              4
  CLUS_7                            9                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       12     15     11
  DEL PEAK 25(16Q23.1) WILD-TYPE      2      9      6
D50V7, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           12                              2
  CLUS_2                           15                              9
  CLUS_3                           11                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       16      6     11      5
  DEL PEAK 25(16Q23.1) WILD-TYPE      7      2      7      1
D50V8, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                            6                              2
  CLUS_3                           11                              7
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED        7     10      9     12
  DEL PEAK 25(16Q23.1) WILD-TYPE      2      4      5      6
D50V9, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                           10                              4
  CLUS_3                            9                              5
  CLUS_4                           12                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       17      5     10      6
  DEL PEAK 25(16Q23.1) WILD-TYPE      7      2      7      1
D50V10, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                            5                              2
  CLUS_3                           10                              7
  CLUS_4                            6                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 26(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P13.1) MUTATED       18     14     10
  DEL PEAK 26(17P13.1) WILD-TYPE      3      8      3
D51V1, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           18                              3
  CLUS_2                           14                              8
  CLUS_3                           10                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED       18      7      9      8
  DEL PEAK 26(17P13.1) WILD-TYPE      1      6      4      3
D51V2, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           18                              1
  CLUS_2                            7                              6
  CLUS_3                            9                              4
  CLUS_4                            8                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P13.1) MUTATED       11      7      8      5      5
  DEL PEAK 26(17P13.1) WILD-TYPE      0      2      4      1      4
D51V3, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           11                              0
  CLUS_2                            7                              2
  CLUS_3                            8                              4
  CLUS_4                            5                              1
  CLUS_5                            5                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(17P13.1) MUTATED        7      7      7      5      5      2
  DEL PEAK 26(17P13.1) WILD-TYPE      1      1      0      2      2      3
                                vv
clus                             CLUS_7
  DEL PEAK 26(17P13.1) MUTATED        3
  DEL PEAK 26(17P13.1) WILD-TYPE      2
D51V4, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            7                              1
  CLUS_3                            7                              0
  CLUS_4                            5                              2
  CLUS_5                            5                              2
  CLUS_6                            2                              3
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED       13     11      8     10
  DEL PEAK 26(17P13.1) WILD-TYPE      2      8      4      0
D51V5, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           13                              2
  CLUS_2                           11                              8
  CLUS_3                            8                              4
  CLUS_4                           10                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(17P13.1) MUTATED        9      4      5      5      7      4
  DEL PEAK 26(17P13.1) WILD-TYPE      1      0      3      1      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 26(17P13.1) MUTATED        8
  DEL PEAK 26(17P13.1) WILD-TYPE      6
D51V6, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                            9                              1
  CLUS_2                            4                              0
  CLUS_3                            5                              3
  CLUS_4                            5                              1
  CLUS_5                            7                              1
  CLUS_6                            4                              2
  CLUS_7                            8                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P13.1) MUTATED       11     21     10
  DEL PEAK 26(17P13.1) WILD-TYPE      3      3      7
D51V7, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           11                              3
  CLUS_2                           21                              3
  CLUS_3                           10                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED       17      8     14      3
  DEL PEAK 26(17P13.1) WILD-TYPE      6      0      4      3
D51V8, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           17                              6
  CLUS_2                            8                              0
  CLUS_3                           14                              4
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED        8     14     11      9
  DEL PEAK 26(17P13.1) WILD-TYPE      1      0      3      9
D51V9, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                           14                              0
  CLUS_3                           11                              3
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P13.1) MUTATED       18      7     14      3
  DEL PEAK 26(17P13.1) WILD-TYPE      6      0      3      4
D51V10, multiclass
        clus
vv       DEL PEAK 26(17P13.1) MUTATED DEL PEAK 26(17P13.1) WILD-TYPE
  CLUS_1                           18                              6
  CLUS_2                            7                              0
  CLUS_3                           14                              3
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 27(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q21.31) MUTATED       12      8      7
  DEL PEAK 27(17Q21.31) WILD-TYPE      9     14      6
D52V1, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                            12                               9
  CLUS_2                             8                              14
  CLUS_3                             7                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q21.31) MUTATED       13      3      7      4
  DEL PEAK 27(17Q21.31) WILD-TYPE      6     10      6      7
D52V2, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                            13                               6
  CLUS_2                             3                              10
  CLUS_3                             7                               6
  CLUS_4                             4                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17Q21.31) MUTATED        8      4      6      3      3
  DEL PEAK 27(17Q21.31) WILD-TYPE      3      5      6      3      6
D52V3, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                             8                               3
  CLUS_2                             4                               5
  CLUS_3                             6                               6
  CLUS_4                             3                               3
  CLUS_5                             3                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17Q21.31) MUTATED        7      5      4      1      4      2
  DEL PEAK 27(17Q21.31) WILD-TYPE      1      3      3      6      3      3
                                 vv
clus                              CLUS_7
  DEL PEAK 27(17Q21.31) MUTATED        1
  DEL PEAK 27(17Q21.31) WILD-TYPE      4
D52V4, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                             7                               1
  CLUS_2                             5                               3
  CLUS_3                             4                               3
  CLUS_4                             1                               6
  CLUS_5                             4                               3
  CLUS_6                             2                               3
  CLUS_7                             1                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q21.31) MUTATED        9     10      3      5
  DEL PEAK 27(17Q21.31) WILD-TYPE      6      9      9      5
D52V5, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                             9                               6
  CLUS_2                            10                               9
  CLUS_3                             3                               9
  CLUS_4                             5                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17Q21.31) MUTATED        7      3      3      2      3      1
  DEL PEAK 27(17Q21.31) WILD-TYPE      3      1      5      4      5      5
                                 vv
clus                              CLUS_7
  DEL PEAK 27(17Q21.31) MUTATED        8
  DEL PEAK 27(17Q21.31) WILD-TYPE      6
D52V6, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                             7                               3
  CLUS_2                             3                               1
  CLUS_3                             3                               5
  CLUS_4                             2                               4
  CLUS_5                             3                               5
  CLUS_6                             1                               5
  CLUS_7                             8                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q21.31) MUTATED        6     10     11
  DEL PEAK 27(17Q21.31) WILD-TYPE      8     14      6
D52V7, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                             6                               8
  CLUS_2                            10                              14
  CLUS_3                            11                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q21.31) MUTATED       12      5      5      5
  DEL PEAK 27(17Q21.31) WILD-TYPE     11      3     13      1
D52V8, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                            12                              11
  CLUS_2                             5                               3
  CLUS_3                             5                              13
  CLUS_4                             5                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q21.31) MUTATED        7      7      3     10
  DEL PEAK 27(17Q21.31) WILD-TYPE      2      7     11      8
D52V9, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                             7                               7
  CLUS_3                             3                              11
  CLUS_4                            10                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q21.31) MUTATED       12      5      5      5
  DEL PEAK 27(17Q21.31) WILD-TYPE     12      2     12      2
D52V10, multiclass
        clus
vv       DEL PEAK 27(17Q21.31) MUTATED DEL PEAK 27(17Q21.31) WILD-TYPE
  CLUS_1                            12                              12
  CLUS_2                             5                               2
  CLUS_3                             5                              12
  CLUS_4                             5                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 28(18Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED       12     11      3
  DEL PEAK 28(18Q22.2) WILD-TYPE      9     11     10
D53V1, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           11                             11
  CLUS_3                            3                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED       11      6      4      5
  DEL PEAK 28(18Q22.2) WILD-TYPE      8      7      9      6
D53V2, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                           11                              8
  CLUS_2                            6                              7
  CLUS_3                            4                              9
  CLUS_4                            5                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q22.2) MUTATED        8      5      6      2      3
  DEL PEAK 28(18Q22.2) WILD-TYPE      3      4      6      4      6
D53V3, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                            5                              4
  CLUS_3                            6                              6
  CLUS_4                            2                              4
  CLUS_5                            3                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q22.2) MUTATED        5      3      6      3      3      2
  DEL PEAK 28(18Q22.2) WILD-TYPE      3      5      1      4      4      3
                                vv
clus                             CLUS_7
  DEL PEAK 28(18Q22.2) MUTATED        2
  DEL PEAK 28(18Q22.2) WILD-TYPE      3
D53V4, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            3                              5
  CLUS_3                            6                              1
  CLUS_4                            3                              4
  CLUS_5                            3                              4
  CLUS_6                            2                              3
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED        8      6      7      5
  DEL PEAK 28(18Q22.2) WILD-TYPE      7     13      5      5
D53V5, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            8                              7
  CLUS_2                            6                             13
  CLUS_3                            7                              5
  CLUS_4                            5                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q22.2) MUTATED        7      2      4      3      2      4
  DEL PEAK 28(18Q22.2) WILD-TYPE      3      2      4      3      6      2
                                vv
clus                             CLUS_7
  DEL PEAK 28(18Q22.2) MUTATED        4
  DEL PEAK 28(18Q22.2) WILD-TYPE     10
D53V6, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            7                              3
  CLUS_2                            2                              2
  CLUS_3                            4                              4
  CLUS_4                            3                              3
  CLUS_5                            2                              6
  CLUS_6                            4                              2
  CLUS_7                            4                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q22.2) MUTATED        5     17      4
  DEL PEAK 28(18Q22.2) WILD-TYPE      9      7     13
D53V7, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                           17                              7
  CLUS_3                            4                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED        7      6     11      2
  DEL PEAK 28(18Q22.2) WILD-TYPE     16      2      7      4
D53V8, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                            6                              2
  CLUS_3                           11                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED        6      4     11      5
  DEL PEAK 28(18Q22.2) WILD-TYPE      3     10      3     13
D53V9, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                            4                             10
  CLUS_3                           11                              3
  CLUS_4                            5                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q22.2) MUTATED        7      5     12      2
  DEL PEAK 28(18Q22.2) WILD-TYPE     17      2      5      5
D53V10, multiclass
        clus
vv       DEL PEAK 28(18Q22.2) MUTATED DEL PEAK 28(18Q22.2) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            5                              2
  CLUS_3                           12                              5
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 29(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       20     16     11
  DEL PEAK 29(19P13.3) WILD-TYPE      1      6      2
D54V1, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           20                              1
  CLUS_2                           16                              6
  CLUS_3                           11                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       18      9      9     11
  DEL PEAK 29(19P13.3) WILD-TYPE      1      4      4      0
D54V2, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           18                              1
  CLUS_2                            9                              4
  CLUS_3                            9                              4
  CLUS_4                           11                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       10      9     10      4      7
  DEL PEAK 29(19P13.3) WILD-TYPE      1      0      2      2      2
D54V3, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            9                              0
  CLUS_3                           10                              2
  CLUS_4                            4                              2
  CLUS_5                            7                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19P13.3) MUTATED        7      6      7      7      7      3
  DEL PEAK 29(19P13.3) WILD-TYPE      1      2      0      0      0      2
                                vv
clus                             CLUS_7
  DEL PEAK 29(19P13.3) MUTATED        3
  DEL PEAK 29(19P13.3) WILD-TYPE      2
D54V4, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            6                              2
  CLUS_3                            7                              0
  CLUS_4                            7                              0
  CLUS_5                            7                              0
  CLUS_6                            3                              2
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       13     13     12      9
  DEL PEAK 29(19P13.3) WILD-TYPE      2      6      0      1
D54V5, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           13                              2
  CLUS_2                           13                              6
  CLUS_3                           12                              0
  CLUS_4                            9                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19P13.3) MUTATED        9      4      7      6      6      6
  DEL PEAK 29(19P13.3) WILD-TYPE      1      0      1      0      2      0
                                vv
clus                             CLUS_7
  DEL PEAK 29(19P13.3) MUTATED        9
  DEL PEAK 29(19P13.3) WILD-TYPE      5
D54V6, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                            9                              1
  CLUS_2                            4                              0
  CLUS_3                            7                              1
  CLUS_4                            6                              0
  CLUS_5                            6                              2
  CLUS_6                            6                              0
  CLUS_7                            9                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       12     23     12
  DEL PEAK 29(19P13.3) WILD-TYPE      2      1      5
D54V7, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           12                              2
  CLUS_2                           23                              1
  CLUS_3                           12                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       17      7     18      5
  DEL PEAK 29(19P13.3) WILD-TYPE      6      1      0      1
D54V8, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           17                              6
  CLUS_2                            7                              1
  CLUS_3                           18                              0
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED        8     13     14     12
  DEL PEAK 29(19P13.3) WILD-TYPE      1      1      0      6
D54V9, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                           13                              1
  CLUS_3                           14                              0
  CLUS_4                           12                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       18      6     17      6
  DEL PEAK 29(19P13.3) WILD-TYPE      6      1      0      1
D54V10, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           18                              6
  CLUS_2                            6                              1
  CLUS_3                           17                              0
  CLUS_4                            6                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 30(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19P13.3) MUTATED       19     14     11
  DEL PEAK 30(19P13.3) WILD-TYPE      2      8      2
D55V1, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           19                              2
  CLUS_2                           14                              8
  CLUS_3                           11                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19P13.3) MUTATED       18      9      8      9
  DEL PEAK 30(19P13.3) WILD-TYPE      1      4      5      2
D55V2, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           18                              1
  CLUS_2                            9                              4
  CLUS_3                            8                              5
  CLUS_4                            9                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19P13.3) MUTATED       10      9      7      4      7
  DEL PEAK 30(19P13.3) WILD-TYPE      1      0      5      2      2
D55V3, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           10                              1
  CLUS_2                            9                              0
  CLUS_3                            7                              5
  CLUS_4                            4                              2
  CLUS_5                            7                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19P13.3) MUTATED        7      6      7      7      5      2
  DEL PEAK 30(19P13.3) WILD-TYPE      1      2      0      0      2      3
                                vv
clus                             CLUS_7
  DEL PEAK 30(19P13.3) MUTATED        3
  DEL PEAK 30(19P13.3) WILD-TYPE      2
D55V4, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            6                              2
  CLUS_3                            7                              0
  CLUS_4                            7                              0
  CLUS_5                            5                              2
  CLUS_6                            2                              3
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19P13.3) MUTATED       13     10     12      9
  DEL PEAK 30(19P13.3) WILD-TYPE      2      9      0      1
D55V5, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           13                              2
  CLUS_2                           10                              9
  CLUS_3                           12                              0
  CLUS_4                            9                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19P13.3) MUTATED        9      4      6      6      6      6
  DEL PEAK 30(19P13.3) WILD-TYPE      1      0      2      0      2      0
                                vv
clus                             CLUS_7
  DEL PEAK 30(19P13.3) MUTATED        7
  DEL PEAK 30(19P13.3) WILD-TYPE      7
D55V6, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                            9                              1
  CLUS_2                            4                              0
  CLUS_3                            6                              2
  CLUS_4                            6                              0
  CLUS_5                            6                              2
  CLUS_6                            6                              0
  CLUS_7                            7                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19P13.3) MUTATED       12     23      9
  DEL PEAK 30(19P13.3) WILD-TYPE      2      1      8
D55V7, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           12                              2
  CLUS_2                           23                              1
  CLUS_3                            9                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19P13.3) MUTATED       16      7     18      3
  DEL PEAK 30(19P13.3) WILD-TYPE      7      1      0      3
D55V8, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                            7                              1
  CLUS_3                           18                              0
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19P13.3) MUTATED        8     13     14      9
  DEL PEAK 30(19P13.3) WILD-TYPE      1      1      0      9
D55V9, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                           13                              1
  CLUS_3                           14                              0
  CLUS_4                            9                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19P13.3) MUTATED       17      6     17      4
  DEL PEAK 30(19P13.3) WILD-TYPE      7      1      0      3
D55V10, multiclass
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                            6                              1
  CLUS_3                           17                              0
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 31(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.33) MUTATED       10      4      3
  DEL PEAK 31(19Q13.33) WILD-TYPE     11     18     10
D56V1, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                            10                              11
  CLUS_2                             4                              18
  CLUS_3                             3                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.33) MUTATED       11      2      2      2
  DEL PEAK 31(19Q13.33) WILD-TYPE      8     11     11      9
D56V2, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                            11                               8
  CLUS_2                             2                              11
  CLUS_3                             2                              11
  CLUS_4                             2                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19Q13.33) MUTATED        7      3      2      2      3
  DEL PEAK 31(19Q13.33) WILD-TYPE      4      6     10      4      6
D56V3, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             7                               4
  CLUS_2                             3                               6
  CLUS_3                             2                              10
  CLUS_4                             2                               4
  CLUS_5                             3                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19Q13.33) MUTATED        6      1      3      4      2      0
  DEL PEAK 31(19Q13.33) WILD-TYPE      2      7      4      3      5      5
                                 vv
clus                              CLUS_7
  DEL PEAK 31(19Q13.33) MUTATED        1
  DEL PEAK 31(19Q13.33) WILD-TYPE      4
D56V4, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             6                               2
  CLUS_2                             1                               7
  CLUS_3                             3                               4
  CLUS_4                             4                               3
  CLUS_5                             2                               5
  CLUS_6                             0                               5
  CLUS_7                             1                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.33) MUTATED        9      2      1      5
  DEL PEAK 31(19Q13.33) WILD-TYPE      6     17     11      5
D56V5, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             9                               6
  CLUS_2                             2                              17
  CLUS_3                             1                              11
  CLUS_4                             5                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(19Q13.33) MUTATED        7      2      2      1      3      0
  DEL PEAK 31(19Q13.33) WILD-TYPE      3      2      6      5      5      6
                                 vv
clus                              CLUS_7
  DEL PEAK 31(19Q13.33) MUTATED        2
  DEL PEAK 31(19Q13.33) WILD-TYPE     12
D56V6, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             7                               3
  CLUS_2                             2                               2
  CLUS_3                             2                               6
  CLUS_4                             1                               5
  CLUS_5                             3                               5
  CLUS_6                             0                               6
  CLUS_7                             2                              12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.33) MUTATED        4     10      3
  DEL PEAK 31(19Q13.33) WILD-TYPE     10     14     14
D56V7, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                            10                              14
  CLUS_3                             3                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.33) MUTATED        5      6      4      2
  DEL PEAK 31(19Q13.33) WILD-TYPE     18      2     14      4
D56V8, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             5                              18
  CLUS_2                             6                               2
  CLUS_3                             4                              14
  CLUS_4                             2                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.33) MUTATED        5      6      3      3
  DEL PEAK 31(19Q13.33) WILD-TYPE      4      8     11     15
D56V9, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             5                               4
  CLUS_2                             6                               8
  CLUS_3                             3                              11
  CLUS_4                             3                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19Q13.33) MUTATED        5      6      4      2
  DEL PEAK 31(19Q13.33) WILD-TYPE     19      1     13      5
D56V10, multiclass
        clus
vv       DEL PEAK 31(19Q13.33) MUTATED DEL PEAK 31(19Q13.33) WILD-TYPE
  CLUS_1                             5                              19
  CLUS_2                             6                               1
  CLUS_3                             4                              13
  CLUS_4                             2                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 32(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        2      5      2
  DEL PEAK 32(20P12.1) WILD-TYPE     19     17     11
D57V1, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                             19
  CLUS_2                            5                             17
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        2      2      2      3
  DEL PEAK 32(20P12.1) WILD-TYPE     17     11     11      8
D57V2, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            2                             11
  CLUS_3                            2                             11
  CLUS_4                            3                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(20P12.1) MUTATED        3      0      0      2      1
  DEL PEAK 32(20P12.1) WILD-TYPE      8      9     12      4      8
D57V3, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            0                              9
  CLUS_3                            0                             12
  CLUS_4                            2                              4
  CLUS_5                            1                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        0      1      4      1      0      0
  DEL PEAK 32(20P12.1) WILD-TYPE      8      7      3      6      7      5
                                vv
clus                             CLUS_7
  DEL PEAK 32(20P12.1) MUTATED        0
  DEL PEAK 32(20P12.1) WILD-TYPE      5
D57V4, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            1                              7
  CLUS_3                            4                              3
  CLUS_4                            1                              6
  CLUS_5                            0                              7
  CLUS_6                            0                              5
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        2      2      4      1
  DEL PEAK 32(20P12.1) WILD-TYPE     13     17      8      9
D57V5, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            2                             17
  CLUS_3                            4                              8
  CLUS_4                            1                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(20P12.1) MUTATED        1      0      2      2      1      2
  DEL PEAK 32(20P12.1) WILD-TYPE      9      4      6      4      7      4
                                vv
clus                             CLUS_7
  DEL PEAK 32(20P12.1) MUTATED        1
  DEL PEAK 32(20P12.1) WILD-TYPE     13
D57V6, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            0                              4
  CLUS_3                            2                              6
  CLUS_4                            2                              4
  CLUS_5                            1                              7
  CLUS_6                            2                              4
  CLUS_7                            1                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(20P12.1) MUTATED        4      2      3
  DEL PEAK 32(20P12.1) WILD-TYPE     10     22     14
D57V7, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            2                             22
  CLUS_3                            3                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        6      1      1      1
  DEL PEAK 32(20P12.1) WILD-TYPE     17      7     17      5
D57V8, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                            1                              7
  CLUS_3                            1                             17
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        2      3      1      3
  DEL PEAK 32(20P12.1) WILD-TYPE      7     11     13     15
D57V9, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                             11
  CLUS_3                            1                             13
  CLUS_4                            3                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(20P12.1) MUTATED        6      1      1      1
  DEL PEAK 32(20P12.1) WILD-TYPE     18      6     16      6
D57V10, multiclass
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            1                              6
  CLUS_3                            1                             16
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 33(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.31) MUTATED       17     14      9
  DEL PEAK 33(22Q13.31) WILD-TYPE      4      8      4
D58V1, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                            17                               4
  CLUS_2                            14                               8
  CLUS_3                             9                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.31) MUTATED       14      7     11      8
  DEL PEAK 33(22Q13.31) WILD-TYPE      5      6      2      3
D58V2, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                            14                               5
  CLUS_2                             7                               6
  CLUS_3                            11                               2
  CLUS_4                             8                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.31) MUTATED        8      9      9      4      4
  DEL PEAK 33(22Q13.31) WILD-TYPE      3      0      3      2      5
D58V3, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                             8                               3
  CLUS_2                             9                               0
  CLUS_3                             9                               3
  CLUS_4                             4                               2
  CLUS_5                             4                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(22Q13.31) MUTATED        5      6      4      7      6      4
  DEL PEAK 33(22Q13.31) WILD-TYPE      3      2      3      0      1      1
                                 vv
clus                              CLUS_7
  DEL PEAK 33(22Q13.31) MUTATED        2
  DEL PEAK 33(22Q13.31) WILD-TYPE      3
D58V4, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                             5                               3
  CLUS_2                             6                               2
  CLUS_3                             4                               3
  CLUS_4                             7                               0
  CLUS_5                             6                               1
  CLUS_6                             4                               1
  CLUS_7                             2                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.31) MUTATED        9     13      9      9
  DEL PEAK 33(22Q13.31) WILD-TYPE      6      6      3      1
D58V5, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                             9                               6
  CLUS_2                            13                               6
  CLUS_3                             9                               3
  CLUS_4                             9                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(22Q13.31) MUTATED        5      4      7      4      7      4
  DEL PEAK 33(22Q13.31) WILD-TYPE      5      0      1      2      1      2
                                 vv
clus                              CLUS_7
  DEL PEAK 33(22Q13.31) MUTATED        9
  DEL PEAK 33(22Q13.31) WILD-TYPE      5
D58V6, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                             5                               5
  CLUS_2                             4                               0
  CLUS_3                             7                               1
  CLUS_4                             4                               2
  CLUS_5                             7                               1
  CLUS_6                             4                               2
  CLUS_7                             9                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.31) MUTATED       10     18     12
  DEL PEAK 33(22Q13.31) WILD-TYPE      4      6      5
D58V7, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                            10                               4
  CLUS_2                            18                               6
  CLUS_3                            12                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.31) MUTATED       17      4     15      4
  DEL PEAK 33(22Q13.31) WILD-TYPE      6      4      3      2
D58V8, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                            17                               6
  CLUS_2                             4                               4
  CLUS_3                            15                               3
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.31) MUTATED        6     10     11     13
  DEL PEAK 33(22Q13.31) WILD-TYPE      3      4      3      5
D58V9, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                             6                               3
  CLUS_2                            10                               4
  CLUS_3                            11                               3
  CLUS_4                            13                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.31) MUTATED       17      4     14      5
  DEL PEAK 33(22Q13.31) WILD-TYPE      7      3      3      2
D58V10, multiclass
        clus
vv       DEL PEAK 33(22Q13.31) MUTATED DEL PEAK 33(22Q13.31) WILD-TYPE
  CLUS_1                            17                               7
  CLUS_2                             4                               3
  CLUS_3                            14                               3
  CLUS_4                             5                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 34(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP21.1) MUTATED        9      5      4
  DEL PEAK 34(XP21.1) WILD-TYPE     12     17      9
D59V1, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           9                            12
  CLUS_2                           5                            17
  CLUS_3                           4                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED        6      3      6      3
  DEL PEAK 34(XP21.1) WILD-TYPE     13     10      7      8
D59V2, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           6                            13
  CLUS_2                           3                            10
  CLUS_3                           6                             7
  CLUS_4                           3                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XP21.1) MUTATED        4      4      3      2      4
  DEL PEAK 34(XP21.1) WILD-TYPE      7      5      9      4      5
D59V3, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                           4                             5
  CLUS_3                           3                             9
  CLUS_4                           2                             4
  CLUS_5                           4                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XP21.1) MUTATED        2      3      2      4      3      1
  DEL PEAK 34(XP21.1) WILD-TYPE      6      5      5      3      4      4
                               vv
clus                            CLUS_7
  DEL PEAK 34(XP21.1) MUTATED        2
  DEL PEAK 34(XP21.1) WILD-TYPE      3
D59V4, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             5
  CLUS_3                           2                             5
  CLUS_4                           4                             3
  CLUS_5                           3                             4
  CLUS_6                           1                             4
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED        6      6      3      3
  DEL PEAK 34(XP21.1) WILD-TYPE      9     13      9      7
D59V5, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           6                            13
  CLUS_3                           3                             9
  CLUS_4                           3                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XP21.1) MUTATED        3      2      2      1      4      2
  DEL PEAK 34(XP21.1) WILD-TYPE      7      2      6      5      4      4
                               vv
clus                            CLUS_7
  DEL PEAK 34(XP21.1) MUTATED        4
  DEL PEAK 34(XP21.1) WILD-TYPE     10
D59V6, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           2                             2
  CLUS_3                           2                             6
  CLUS_4                           1                             5
  CLUS_5                           4                             4
  CLUS_6                           2                             4
  CLUS_7                           4                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP21.1) MUTATED        5      8      5
  DEL PEAK 34(XP21.1) WILD-TYPE      9     16     12
D59V7, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           8                            16
  CLUS_3                           5                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED        7      3      6      2
  DEL PEAK 34(XP21.1) WILD-TYPE     16      5     12      4
D59V8, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                           3                             5
  CLUS_3                           6                            12
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED        3      4      6      5
  DEL PEAK 34(XP21.1) WILD-TYPE      6     10      8     13
D59V9, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           4                            10
  CLUS_3                           6                             8
  CLUS_4                           5                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP21.1) MUTATED        7      2      6      3
  DEL PEAK 34(XP21.1) WILD-TYPE     17      5     11      4
D59V10, multiclass
        clus
vv       DEL PEAK 34(XP21.1) MUTATED DEL PEAK 34(XP21.1) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           2                             5
  CLUS_3                           6                            11
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 35(XQ25) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ25) MUTATED       10      8      5
  DEL PEAK 35(XQ25) WILD-TYPE     11     14      8
D60V1, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                        10                          11
  CLUS_2                         8                          14
  CLUS_3                         5                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ25) MUTATED       10      3      7      3
  DEL PEAK 35(XQ25) WILD-TYPE      9     10      6      8
D60V2, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                        10                           9
  CLUS_2                         3                          10
  CLUS_3                         7                           6
  CLUS_4                         3                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XQ25) MUTATED        7      3      3      4      3
  DEL PEAK 35(XQ25) WILD-TYPE      4      6      9      2      6
D60V3, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                         3                           6
  CLUS_3                         3                           9
  CLUS_4                         4                           2
  CLUS_5                         3                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(XQ25) MUTATED        4      6      5      2      2      0      1
  DEL PEAK 35(XQ25) WILD-TYPE      4      2      2      5      5      5      4
D60V4, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                         4                           4
  CLUS_2                         6                           2
  CLUS_3                         5                           2
  CLUS_4                         2                           5
  CLUS_5                         2                           5
  CLUS_6                         0                           5
  CLUS_7                         1                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ25) MUTATED        7      6      3      7
  DEL PEAK 35(XQ25) WILD-TYPE      8     13      9      3
D60V5, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                         7                           8
  CLUS_2                         6                          13
  CLUS_3                         3                           9
  CLUS_4                         7                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(XQ25) MUTATED        5      2      3      2      4      1      6
  DEL PEAK 35(XQ25) WILD-TYPE      5      2      5      4      4      5      8
D60V6, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                         5                           5
  CLUS_2                         2                           2
  CLUS_3                         3                           5
  CLUS_4                         2                           4
  CLUS_5                         4                           4
  CLUS_6                         1                           5
  CLUS_7                         6                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ25) MUTATED        7     11      5
  DEL PEAK 35(XQ25) WILD-TYPE      7     13     12
D60V7, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                        11                          13
  CLUS_3                         5                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ25) MUTATED       10      5      6      2
  DEL PEAK 35(XQ25) WILD-TYPE     13      3     12      4
D60V8, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                        10                          13
  CLUS_2                         5                           3
  CLUS_3                         6                          12
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ25) MUTATED        6      8      4      5
  DEL PEAK 35(XQ25) WILD-TYPE      3      6     10     13
D60V9, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                         6                           3
  CLUS_2                         8                           6
  CLUS_3                         4                          10
  CLUS_4                         5                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ25) MUTATED       10      5      6      2
  DEL PEAK 35(XQ25) WILD-TYPE     14      2     11      5
D60V10, multiclass
        clus
vv       DEL PEAK 35(XQ25) MUTATED DEL PEAK 35(XQ25) WILD-TYPE
  CLUS_1                        10                          14
  CLUS_2                         5                           2
  CLUS_3                         6                          11
  CLUS_4                         2                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
