This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 44 focal events and 10 molecular subtypes across 90 patients, 160 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4p16.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5p15.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5q35.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_6p21.31 cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6q24.3 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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amp_7p22.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_9q31.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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amp_12q14.1 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_14q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_16p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_16q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_16q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q25.3 cnv correlated to 'CN_CNMF'.
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amp_19p13.12 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_xp11.22 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.23 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'CN_CNMF'.
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del_2q37.3 cnv correlated to 'CN_CNMF'.
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del_3q13.31 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q35.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p24.3 cnv correlated to 'CN_CNMF'.
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del_6q26 cnv correlated to 'CN_CNMF'.
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del_9p23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_11p15.5 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_11q14.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_12q14.2 cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_14q21.2 cnv correlated to 'CN_CNMF'.
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del_15q15.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16p13.3 cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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del_16q23.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_17q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q21.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_20p12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_22q12.1 cnv correlated to 'CN_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 14q11 2 | 27 (30%) | 63 |
0.00047 (0.00517) |
0.00065 (0.00696) |
0.0309 (0.102) |
0.0279 (0.0964) |
2e-05 (0.000463) |
1e-05 (0.000275) |
0.00037 (0.0044) |
0.00738 (0.0382) |
4e-05 (8e-04) |
0.00624 (0.0344) |
amp 5q35 3 | 63 (70%) | 27 |
1e-05 (0.000275) |
5e-05 (0.000957) |
0.123 (0.269) |
0.0068 (0.0365) |
1e-05 (0.000275) |
1e-05 (0.000275) |
0.0146 (0.0629) |
0.0464 (0.131) |
4e-05 (8e-04) |
0.0537 (0.142) |
amp 16q24 2 | 49 (54%) | 41 |
1e-05 (0.000275) |
0.0001 (0.00157) |
1 (1.00) |
0.325 (0.485) |
0.00028 (0.00362) |
1e-05 (0.000275) |
0.108 (0.237) |
0.00284 (0.0215) |
0.00416 (0.0265) |
0.0244 (0.0903) |
del 4q34 3 | 25 (28%) | 65 |
0.00042 (0.00486) |
0.0183 (0.072) |
0.809 (0.87) |
0.635 (0.741) |
0.0201 (0.0764) |
0.0391 (0.123) |
0.0531 (0.141) |
0.0419 (0.127) |
0.0257 (0.0937) |
0.00471 (0.0276) |
del 9p23 | 23 (26%) | 67 |
2e-05 (0.000463) |
0.00368 (0.0257) |
0.167 (0.324) |
0.05 (0.137) |
3e-05 (0.00066) |
0.00025 (0.00333) |
0.0324 (0.106) |
0.0464 (0.131) |
0.00179 (0.0143) |
0.277 (0.438) |
amp 1q22 | 17 (19%) | 73 |
0.00167 (0.0139) |
0.00034 (0.00416) |
0.564 (0.698) |
0.4 (0.549) |
0.00244 (0.0188) |
0.00017 (0.00241) |
0.048 (0.133) |
0.155 (0.31) |
0.0644 (0.164) |
0.026 (0.0937) |
amp 9q31 3 | 34 (38%) | 56 |
0.0001 (0.00157) |
0.0283 (0.0964) |
0.129 (0.274) |
0.138 (0.286) |
0.0158 (0.0644) |
0.0189 (0.0723) |
0.00625 (0.0344) |
0.202 (0.364) |
0.0158 (0.0644) |
0.185 (0.343) |
amp 16p13 3 | 50 (56%) | 40 |
1e-05 (0.000275) |
0.00076 (0.00743) |
0.707 (0.794) |
0.0528 (0.141) |
0.00014 (0.00212) |
1e-05 (0.000275) |
0.181 (0.34) |
0.00931 (0.0465) |
0.135 (0.283) |
0.0156 (0.0644) |
amp 16q22 1 | 56 (62%) | 34 |
1e-05 (0.000275) |
0.00391 (0.0261) |
0.875 (0.922) |
0.801 (0.87) |
0.0296 (0.1) |
8e-05 (0.00135) |
0.132 (0.278) |
0.0223 (0.0839) |
0.0372 (0.118) |
0.235 (0.403) |
del 9p21 3 | 26 (29%) | 64 |
1e-05 (0.000275) |
0.00388 (0.0261) |
0.22 (0.387) |
0.226 (0.395) |
1e-05 (0.000275) |
0.00019 (0.00261) |
0.0602 (0.155) |
0.0437 (0.129) |
0.0112 (0.0526) |
0.129 (0.274) |
amp 5p15 33 | 65 (72%) | 25 |
1e-05 (0.000275) |
0.174 (0.333) |
0.811 (0.87) |
0.89 (0.93) |
0.0123 (0.0558) |
0.00068 (0.00696) |
0.095 (0.225) |
0.18 (0.339) |
0.00455 (0.0271) |
0.0366 (0.117) |
amp xq28 | 46 (51%) | 44 |
2e-05 (0.000463) |
0.0141 (0.0614) |
0.102 (0.231) |
0.044 (0.129) |
0.00717 (0.0379) |
0.0119 (0.0547) |
0.846 (0.899) |
0.259 (0.421) |
0.623 (0.733) |
0.104 (0.234) |
del 17q21 2 | 26 (29%) | 64 |
0.0022 (0.0173) |
0.00723 (0.0379) |
0.383 (0.54) |
0.54 (0.678) |
0.101 (0.231) |
0.035 (0.112) |
0.061 (0.156) |
0.0088 (0.0445) |
0.415 (0.562) |
0.0103 (0.0495) |
amp 4p16 3 | 41 (46%) | 49 |
0.0044 (0.0269) |
0.268 (0.432) |
0.955 (0.976) |
0.189 (0.349) |
0.0148 (0.0632) |
0.00611 (0.0344) |
0.883 (0.925) |
0.0461 (0.131) |
0.72 (0.806) |
0.592 (0.721) |
amp 6p21 31 | 19 (21%) | 71 |
0.0235 (0.0876) |
0.535 (0.675) |
0.61 (0.731) |
0.801 (0.87) |
0.0507 (0.138) |
1 (1.00) |
0.0923 (0.222) |
0.0259 (0.0937) |
0.00413 (0.0265) |
0.0424 (0.128) |
amp 12q14 1 | 70 (78%) | 20 |
1e-05 (0.000275) |
0.0515 (0.138) |
0.0584 (0.152) |
0.0101 (0.0493) |
0.017 (0.068) |
0.00177 (0.0143) |
0.316 (0.476) |
0.486 (0.636) |
0.0994 (0.23) |
0.203 (0.364) |
amp 19p13 12 | 58 (64%) | 32 |
1e-05 (0.000275) |
0.142 (0.292) |
0.242 (0.407) |
0.0102 (0.0495) |
0.0015 (0.0127) |
0.00045 (0.00508) |
0.307 (0.469) |
0.48 (0.632) |
0.106 (0.235) |
0.621 (0.733) |
amp xp11 22 | 49 (54%) | 41 |
0.00016 (0.00235) |
0.162 (0.319) |
0.366 (0.525) |
0.0165 (0.0666) |
0.0307 (0.102) |
0.0951 (0.225) |
0.958 (0.976) |
0.145 (0.294) |
0.105 (0.234) |
0.0271 (0.0953) |
del 4q34 3 | 28 (31%) | 62 |
6e-05 (0.0011) |
0.0282 (0.0964) |
0.706 (0.794) |
0.147 (0.295) |
0.208 (0.371) |
0.185 (0.343) |
0.127 (0.274) |
0.19 (0.35) |
0.0154 (0.0644) |
0.0139 (0.0612) |
del 4q35 1 | 30 (33%) | 60 |
0.00079 (0.00756) |
0.0472 (0.131) |
0.389 (0.54) |
0.393 (0.542) |
0.0907 (0.222) |
0.0415 (0.127) |
0.275 (0.438) |
0.167 (0.324) |
0.0971 (0.227) |
0.0309 (0.102) |
del 15q15 1 | 25 (28%) | 65 |
8e-05 (0.00135) |
0.506 (0.653) |
0.904 (0.936) |
0.242 (0.407) |
0.0467 (0.131) |
0.241 (0.407) |
0.809 (0.87) |
0.0482 (0.133) |
0.454 (0.604) |
0.00401 (0.0263) |
del 17q11 2 | 24 (27%) | 66 |
0.0134 (0.0596) |
0.0431 (0.129) |
0.621 (0.733) |
0.629 (0.736) |
0.0806 (0.201) |
0.105 (0.234) |
0.221 (0.387) |
0.0182 (0.072) |
0.254 (0.418) |
0.00438 (0.0269) |
del 17q24 2 | 24 (27%) | 66 |
0.0345 (0.112) |
0.00378 (0.026) |
0.702 (0.791) |
0.29 (0.454) |
0.137 (0.286) |
0.0396 (0.123) |
0.341 (0.497) |
0.0268 (0.095) |
0.235 (0.403) |
0.302 (0.467) |
del 20p12 1 | 12 (13%) | 78 |
0.00507 (0.029) |
0.255 (0.418) |
0.518 (0.658) |
0.621 (0.733) |
0.0451 (0.13) |
0.0266 (0.095) |
0.0443 (0.129) |
0.516 (0.657) |
0.0599 (0.155) |
0.402 (0.55) |
amp 7p22 1 | 54 (60%) | 36 |
0.00294 (0.0219) |
0.244 (0.407) |
0.333 (0.493) |
0.674 (0.773) |
0.00649 (0.0353) |
0.0327 (0.107) |
0.44 (0.591) |
0.491 (0.637) |
0.0961 (0.226) |
0.37 (0.529) |
amp 19q12 | 56 (62%) | 34 |
1e-05 (0.000275) |
0.111 (0.242) |
0.444 (0.591) |
0.168 (0.324) |
0.00135 (0.0116) |
0.00118 (0.0104) |
0.203 (0.364) |
0.253 (0.417) |
0.157 (0.311) |
0.239 (0.405) |
del 12q14 2 | 5 (6%) | 85 |
0.072 (0.182) |
0.195 (0.357) |
0.178 (0.339) |
0.00095 (0.00889) |
0.0512 (0.138) |
0.306 (0.469) |
0.0189 (0.0723) |
0.00424 (0.0267) |
||
del 16q23 1 | 11 (12%) | 79 |
0.0157 (0.0644) |
0.391 (0.541) |
0.573 (0.707) |
0.233 (0.402) |
0.0442 (0.129) |
0.0111 (0.0526) |
0.0553 (0.145) |
0.139 (0.287) |
0.337 (0.494) |
0.0754 (0.189) |
amp 6q24 3 | 19 (21%) | 71 |
0.0127 (0.057) |
0.809 (0.87) |
0.903 (0.936) |
0.64 (0.745) |
0.028 (0.0964) |
0.934 (0.963) |
0.261 (0.422) |
0.231 (0.402) |
0.1 (0.23) |
0.399 (0.548) |
del 1p36 23 | 38 (42%) | 52 |
1e-05 (0.000275) |
0.145 (0.294) |
0.802 (0.87) |
0.145 (0.294) |
0.0923 (0.222) |
0.00358 (0.0257) |
1 (1.00) |
0.559 (0.693) |
0.353 (0.511) |
0.0923 (0.222) |
del 3q13 31 | 25 (28%) | 65 |
0.00986 (0.0487) |
0.61 (0.731) |
0.338 (0.494) |
0.47 (0.622) |
0.104 (0.234) |
0.0402 (0.124) |
0.2 (0.363) |
0.2 (0.363) |
0.125 (0.271) |
0.0883 (0.218) |
del 11p15 5 | 26 (29%) | 64 |
0.00029 (0.00365) |
0.179 (0.339) |
0.387 (0.54) |
0.671 (0.772) |
0.127 (0.274) |
0.0395 (0.123) |
0.215 (0.381) |
0.596 (0.724) |
0.598 (0.725) |
0.49 (0.637) |
del 11q14 1 | 24 (27%) | 66 |
0.00453 (0.0271) |
0.0186 (0.0723) |
0.968 (0.983) |
0.551 (0.687) |
0.293 (0.454) |
0.374 (0.531) |
0.332 (0.493) |
0.645 (0.749) |
0.544 (0.679) |
0.603 (0.729) |
del 13q14 2 | 42 (47%) | 48 |
0.00115 (0.0103) |
0.0454 (0.13) |
0.58 (0.71) |
0.839 (0.896) |
0.275 (0.438) |
0.559 (0.693) |
0.958 (0.976) |
0.529 (0.669) |
0.605 (0.729) |
0.357 (0.514) |
amp 17q25 3 | 18 (20%) | 72 |
0.00487 (0.0282) |
0.876 (0.922) |
0.614 (0.733) |
0.1 (0.23) |
0.164 (0.321) |
0.672 (0.772) |
0.92 (0.95) |
0.696 (0.787) |
0.259 (0.421) |
0.69 (0.787) |
del 2q22 1 | 18 (20%) | 72 |
0.00365 (0.0257) |
0.158 (0.312) |
0.761 (0.843) |
0.796 (0.87) |
0.233 (0.402) |
0.0893 (0.219) |
0.274 (0.438) |
0.663 (0.766) |
0.389 (0.54) |
0.507 (0.653) |
del 2q37 3 | 21 (23%) | 69 |
0.00313 (0.023) |
0.151 (0.303) |
0.693 (0.787) |
0.83 (0.889) |
0.322 (0.482) |
0.0929 (0.222) |
0.43 (0.581) |
0.528 (0.669) |
0.76 (0.843) |
0.949 (0.973) |
del 6p24 3 | 20 (22%) | 70 |
0.00099 (0.00907) |
0.762 (0.843) |
0.616 (0.733) |
0.318 (0.478) |
0.614 (0.733) |
0.483 (0.634) |
0.505 (0.653) |
0.0987 (0.23) |
0.47 (0.622) |
0.245 (0.407) |
del 6q26 | 21 (23%) | 69 |
0.00068 (0.00696) |
0.146 (0.295) |
0.512 (0.655) |
0.313 (0.475) |
0.315 (0.476) |
0.308 (0.469) |
0.276 (0.438) |
0.348 (0.505) |
0.387 (0.54) |
0.253 (0.417) |
del 14q21 2 | 20 (22%) | 70 |
0.0115 (0.0532) |
0.541 (0.678) |
0.388 (0.54) |
0.579 (0.71) |
0.293 (0.454) |
0.285 (0.449) |
0.244 (0.407) |
0.735 (0.82) |
0.512 (0.655) |
0.859 (0.91) |
del 16p13 3 | 8 (9%) | 82 |
0.306 (0.469) |
0.628 (0.736) |
0.938 (0.964) |
0.286 (0.449) |
0.13 (0.276) |
0.00782 (0.04) |
0.0846 (0.21) |
0.785 (0.863) |
0.336 (0.494) |
0.196 (0.358) |
del 22q12 1 | 50 (56%) | 40 |
0.00076 (0.00743) |
0.384 (0.54) |
0.791 (0.868) |
0.291 (0.454) |
0.844 (0.899) |
0.184 (0.343) |
0.364 (0.523) |
0.88 (0.924) |
0.898 (0.936) |
0.442 (0.591) |
del 7q36 3 | 11 (12%) | 79 |
0.215 (0.381) |
0.587 (0.718) |
0.409 (0.556) |
0.66 (0.765) |
0.171 (0.328) |
0.336 (0.494) |
0.901 (0.936) |
0.736 (0.82) |
0.676 (0.773) |
0.372 (0.53) |
del 10q23 1 | 10 (11%) | 80 |
0.438 (0.589) |
0.78 (0.86) |
1 (1.00) |
0.239 (0.405) |
0.409 (0.556) |
1 (1.00) |
0.695 (0.787) |
0.801 (0.87) |
0.865 (0.914) |
0.49 (0.637) |
P value = 0.00167 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 1(1Q22) MUTATED | 8 | 0 | 0 | 6 | 3 | 0 | 0 |
AMP PEAK 1(1Q22) WILD-TYPE | 11 | 18 | 13 | 12 | 8 | 6 | 5 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 1(1Q22) MUTATED | 8 | 5 | 2 | 0 | 0 | 0 | 0 |
AMP PEAK 1(1Q22) WILD-TYPE | 8 | 9 | 6 | 17 | 9 | 12 | 2 |
P value = 0.00244 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 1(1Q22) MUTATED | 11 | 1 | 1 | 2 |
AMP PEAK 1(1Q22) WILD-TYPE | 13 | 13 | 15 | 21 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 1(1Q22) MUTATED | 11 | 1 | 2 | 1 |
AMP PEAK 1(1Q22) WILD-TYPE | 12 | 22 | 5 | 23 |
P value = 0.048 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 24 | 25 |
AMP PEAK 1(1Q22) MUTATED | 7 | 7 | 1 |
AMP PEAK 1(1Q22) WILD-TYPE | 22 | 17 | 24 |
P value = 0.026 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 1(1Q22) MUTATED | 1 | 3 | 1 | 7 | 3 | 0 |
AMP PEAK 1(1Q22) WILD-TYPE | 5 | 21 | 10 | 7 | 8 | 11 |
P value = 0.0044 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 2(4P16.3) MUTATED | 4 | 8 | 9 | 6 | 4 | 5 | 5 |
AMP PEAK 2(4P16.3) WILD-TYPE | 15 | 10 | 4 | 12 | 7 | 1 | 0 |
P value = 0.0148 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 2(4P16.3) MUTATED | 5 | 8 | 11 | 10 |
AMP PEAK 2(4P16.3) WILD-TYPE | 19 | 6 | 5 | 13 |
P value = 0.00611 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 2(4P16.3) MUTATED | 5 | 15 | 1 | 13 |
AMP PEAK 2(4P16.3) WILD-TYPE | 18 | 8 | 6 | 11 |
P value = 0.0461 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 2(4P16.3) MUTATED | 11 | 10 | 6 | 5 | 3 |
AMP PEAK 2(4P16.3) WILD-TYPE | 5 | 17 | 5 | 15 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 3(5P15.33) MUTATED | 5 | 18 | 11 | 14 | 7 | 5 | 5 |
AMP PEAK 3(5P15.33) WILD-TYPE | 14 | 0 | 2 | 4 | 4 | 1 | 0 |
P value = 0.0123 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 3(5P15.33) MUTATED | 12 | 11 | 15 | 19 |
AMP PEAK 3(5P15.33) WILD-TYPE | 12 | 3 | 1 | 4 |
P value = 0.00068 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 3(5P15.33) MUTATED | 13 | 20 | 2 | 22 |
AMP PEAK 3(5P15.33) WILD-TYPE | 10 | 3 | 5 | 2 |
P value = 0.00455 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 3(5P15.33) MUTATED | 9 | 11 | 16 | 21 |
AMP PEAK 3(5P15.33) WILD-TYPE | 7 | 8 | 0 | 5 |
P value = 0.0366 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 3(5P15.33) MUTATED | 6 | 19 | 11 | 8 | 6 | 7 |
AMP PEAK 3(5P15.33) WILD-TYPE | 0 | 5 | 0 | 6 | 5 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 4(5Q35.3) MUTATED | 6 | 18 | 13 | 9 | 7 | 5 | 5 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 13 | 0 | 0 | 9 | 4 | 1 | 0 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 4(5Q35.3) MUTATED | 5 | 7 | 6 | 16 | 8 | 12 | 2 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 11 | 7 | 2 | 1 | 1 | 0 | 0 |
P value = 0.0068 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 4(5Q35.3) MUTATED | 4 | 7 | 7 | 1 | 2 | 4 | 6 | 3 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 4(5Q35.3) MUTATED | 7 | 13 | 15 | 20 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 17 | 1 | 1 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 4(5Q35.3) MUTATED | 8 | 22 | 2 | 23 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 15 | 1 | 5 | 1 |
P value = 0.0146 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 24 | 25 |
AMP PEAK 4(5Q35.3) MUTATED | 19 | 14 | 23 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 10 | 10 | 2 |
P value = 0.0464 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 4(5Q35.3) MUTATED | 14 | 21 | 9 | 9 | 3 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 2 | 6 | 2 | 11 | 1 |
P value = 4e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 4(5Q35.3) MUTATED | 4 | 14 | 15 | 22 |
AMP PEAK 4(5Q35.3) WILD-TYPE | 12 | 5 | 1 | 4 |
P value = 0.0235 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 5(6P21.31) MUTATED | 2 | 2 | 2 | 3 | 7 | 1 | 2 |
AMP PEAK 5(6P21.31) WILD-TYPE | 17 | 16 | 11 | 15 | 4 | 5 | 3 |
P value = 0.0259 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 5(6P21.31) MUTATED | 5 | 2 | 5 | 2 | 0 |
AMP PEAK 5(6P21.31) WILD-TYPE | 11 | 25 | 6 | 18 | 4 |
P value = 0.00413 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 5(6P21.31) MUTATED | 3 | 0 | 7 | 3 |
AMP PEAK 5(6P21.31) WILD-TYPE | 13 | 19 | 9 | 23 |
P value = 0.0424 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 5(6P21.31) MUTATED | 2 | 2 | 5 | 2 | 0 | 2 |
AMP PEAK 5(6P21.31) WILD-TYPE | 4 | 22 | 6 | 12 | 11 | 9 |
P value = 0.0127 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 6(6Q24.3) MUTATED | 4 | 1 | 2 | 2 | 7 | 1 | 2 |
AMP PEAK 6(6Q24.3) WILD-TYPE | 15 | 17 | 11 | 16 | 4 | 5 | 3 |
P value = 0.028 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 6(6Q24.3) MUTATED | 5 | 0 | 7 | 4 |
AMP PEAK 6(6Q24.3) WILD-TYPE | 19 | 14 | 9 | 19 |
P value = 0.00294 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 7(7P22.1) MUTATED | 6 | 12 | 12 | 12 | 4 | 3 | 5 |
AMP PEAK 7(7P22.1) WILD-TYPE | 13 | 6 | 1 | 6 | 7 | 3 | 0 |
P value = 0.00649 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 7(7P22.1) MUTATED | 10 | 13 | 12 | 12 |
AMP PEAK 7(7P22.1) WILD-TYPE | 14 | 1 | 4 | 11 |
P value = 0.0327 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 7(7P22.1) MUTATED | 12 | 19 | 2 | 14 |
AMP PEAK 7(7P22.1) WILD-TYPE | 11 | 4 | 5 | 10 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 8(9Q31.3) MUTATED | 4 | 1 | 11 | 9 | 5 | 3 | 1 |
AMP PEAK 8(9Q31.3) WILD-TYPE | 15 | 17 | 2 | 9 | 6 | 3 | 4 |
P value = 0.0283 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 8(9Q31.3) MUTATED | 7 | 2 | 3 | 9 | 2 | 1 | 2 |
AMP PEAK 8(9Q31.3) WILD-TYPE | 9 | 12 | 5 | 8 | 7 | 11 | 0 |
P value = 0.0158 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 8(9Q31.3) MUTATED | 8 | 9 | 5 | 3 |
AMP PEAK 8(9Q31.3) WILD-TYPE | 16 | 5 | 11 | 20 |
P value = 0.0189 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 8(9Q31.3) MUTATED | 9 | 12 | 1 | 3 |
AMP PEAK 8(9Q31.3) WILD-TYPE | 14 | 11 | 6 | 21 |
P value = 0.00625 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 24 | 25 |
AMP PEAK 8(9Q31.3) MUTATED | 10 | 13 | 3 |
AMP PEAK 8(9Q31.3) WILD-TYPE | 19 | 11 | 22 |
P value = 0.0158 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 8(9Q31.3) MUTATED | 7 | 10 | 6 | 3 |
AMP PEAK 8(9Q31.3) WILD-TYPE | 9 | 9 | 10 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 9(12Q14.1) MUTATED | 4 | 18 | 12 | 17 | 9 | 5 | 5 |
AMP PEAK 9(12Q14.1) WILD-TYPE | 15 | 0 | 1 | 1 | 2 | 1 | 0 |
P value = 0.0101 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 9(12Q14.1) MUTATED | 7 | 6 | 7 | 3 | 3 | 4 | 5 | 1 |
AMP PEAK 9(12Q14.1) WILD-TYPE | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 5 |
P value = 0.017 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 9(12Q14.1) MUTATED | 14 | 14 | 13 | 19 |
AMP PEAK 9(12Q14.1) WILD-TYPE | 10 | 0 | 3 | 4 |
P value = 0.00177 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 9(12Q14.1) MUTATED | 14 | 20 | 3 | 23 |
AMP PEAK 9(12Q14.1) WILD-TYPE | 9 | 3 | 4 | 1 |
P value = 0.00047 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 10(14Q11.2) MUTATED | 1 | 3 | 9 | 6 | 6 | 0 | 2 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 18 | 15 | 4 | 12 | 5 | 6 | 3 |
P value = 0.00065 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 10(14Q11.2) MUTATED | 5 | 0 | 4 | 11 | 2 | 1 | 1 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 11 | 14 | 4 | 6 | 7 | 11 | 1 |
P value = 0.0309 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 10 | 11 | 10 | 14 |
AMP PEAK 10(14Q11.2) MUTATED | 2 | 6 | 0 | 5 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 8 | 5 | 10 | 9 |
P value = 0.0279 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 10(14Q11.2) MUTATED | 3 | 5 | 0 | 2 | 0 | 0 | 1 | 2 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 5 | 2 | 7 | 1 | 4 | 4 | 5 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 10(14Q11.2) MUTATED | 4 | 8 | 10 | 1 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 20 | 6 | 6 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 10(14Q11.2) MUTATED | 5 | 16 | 0 | 2 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 18 | 7 | 7 | 22 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 24 | 25 |
AMP PEAK 10(14Q11.2) MUTATED | 15 | 8 | 1 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 14 | 16 | 24 |
P value = 0.00738 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 10(14Q11.2) MUTATED | 9 | 3 | 3 | 6 | 3 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 7 | 24 | 8 | 14 | 1 |
P value = 4e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 10(14Q11.2) MUTATED | 5 | 6 | 11 | 1 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 11 | 13 | 5 | 25 |
P value = 0.00624 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 10(14Q11.2) MUTATED | 4 | 3 | 7 | 4 | 4 | 1 |
AMP PEAK 10(14Q11.2) WILD-TYPE | 2 | 21 | 4 | 10 | 7 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 11(16P13.3) MUTATED | 2 | 18 | 13 | 6 | 5 | 4 | 2 |
AMP PEAK 11(16P13.3) WILD-TYPE | 17 | 0 | 0 | 12 | 6 | 2 | 3 |
P value = 0.00076 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 11(16P13.3) MUTATED | 5 | 4 | 5 | 12 | 6 | 12 | 1 |
AMP PEAK 11(16P13.3) WILD-TYPE | 11 | 10 | 3 | 5 | 3 | 0 | 1 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 11(16P13.3) MUTATED | 5 | 10 | 13 | 16 |
AMP PEAK 11(16P13.3) WILD-TYPE | 19 | 4 | 3 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 11(16P13.3) MUTATED | 6 | 19 | 0 | 19 |
AMP PEAK 11(16P13.3) WILD-TYPE | 17 | 4 | 7 | 5 |
P value = 0.00931 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 11(16P13.3) MUTATED | 14 | 16 | 7 | 6 | 2 |
AMP PEAK 11(16P13.3) WILD-TYPE | 2 | 11 | 4 | 14 | 2 |
P value = 0.0156 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 11(16P13.3) MUTATED | 5 | 16 | 9 | 4 | 3 | 7 |
AMP PEAK 11(16P13.3) WILD-TYPE | 1 | 8 | 2 | 10 | 8 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 12(16Q22.1) MUTATED | 2 | 18 | 13 | 13 | 4 | 4 | 2 |
AMP PEAK 12(16Q22.1) WILD-TYPE | 17 | 0 | 0 | 5 | 7 | 2 | 3 |
P value = 0.00391 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 12(16Q22.1) MUTATED | 7 | 5 | 6 | 13 | 5 | 12 | 1 |
AMP PEAK 12(16Q22.1) WILD-TYPE | 9 | 9 | 2 | 4 | 4 | 0 | 1 |
P value = 0.0296 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 12(16Q22.1) MUTATED | 9 | 11 | 12 | 16 |
AMP PEAK 12(16Q22.1) WILD-TYPE | 15 | 3 | 4 | 7 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 12(16Q22.1) MUTATED | 9 | 20 | 1 | 18 |
AMP PEAK 12(16Q22.1) WILD-TYPE | 14 | 3 | 6 | 6 |
P value = 0.0223 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 12(16Q22.1) MUTATED | 15 | 17 | 6 | 9 | 2 |
AMP PEAK 12(16Q22.1) WILD-TYPE | 1 | 10 | 5 | 11 | 2 |
P value = 0.0372 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 12(16Q22.1) MUTATED | 6 | 10 | 13 | 19 |
AMP PEAK 12(16Q22.1) WILD-TYPE | 10 | 9 | 3 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 13(16Q24.2) MUTATED | 3 | 18 | 12 | 5 | 5 | 4 | 2 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 16 | 0 | 1 | 13 | 6 | 2 | 3 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 13(16Q24.2) MUTATED | 3 | 5 | 5 | 13 | 5 | 12 | 1 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 13 | 9 | 3 | 4 | 4 | 0 | 1 |
P value = 0.00028 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 13(16Q24.2) MUTATED | 5 | 11 | 12 | 16 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 19 | 3 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 13(16Q24.2) MUTATED | 5 | 20 | 1 | 18 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 18 | 3 | 6 | 6 |
P value = 0.00284 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 13(16Q24.2) MUTATED | 14 | 17 | 6 | 5 | 2 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 2 | 10 | 5 | 15 | 2 |
P value = 0.00416 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
AMP PEAK 13(16Q24.2) MUTATED | 3 | 10 | 12 | 18 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 13 | 9 | 4 | 8 |
P value = 0.0244 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 13(16Q24.2) MUTATED | 5 | 16 | 8 | 3 | 4 | 7 |
AMP PEAK 13(16Q24.2) WILD-TYPE | 1 | 8 | 3 | 11 | 7 | 4 |
P value = 0.00487 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 14(17Q25.3) MUTATED | 2 | 1 | 0 | 8 | 3 | 3 | 1 |
AMP PEAK 14(17Q25.3) WILD-TYPE | 17 | 17 | 13 | 10 | 8 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 15(19P13.12) MUTATED | 4 | 9 | 13 | 15 | 7 | 5 | 5 |
AMP PEAK 15(19P13.12) WILD-TYPE | 15 | 9 | 0 | 3 | 4 | 1 | 0 |
P value = 0.0102 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 15(19P13.12) MUTATED | 8 | 7 | 4 | 3 | 1 | 3 | 4 | 2 |
AMP PEAK 15(19P13.12) WILD-TYPE | 0 | 0 | 3 | 0 | 3 | 1 | 2 | 4 |
P value = 0.0015 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 15(19P13.12) MUTATED | 12 | 14 | 12 | 11 |
AMP PEAK 15(19P13.12) WILD-TYPE | 12 | 0 | 4 | 12 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 15(19P13.12) MUTATED | 15 | 21 | 1 | 12 |
AMP PEAK 15(19P13.12) WILD-TYPE | 8 | 2 | 6 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 16(19Q12) MUTATED | 4 | 7 | 13 | 16 | 7 | 4 | 5 |
AMP PEAK 16(19Q12) WILD-TYPE | 15 | 11 | 0 | 2 | 4 | 2 | 0 |
P value = 0.00135 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 16(19Q12) MUTATED | 12 | 14 | 11 | 10 |
AMP PEAK 16(19Q12) WILD-TYPE | 12 | 0 | 5 | 13 |
P value = 0.00118 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 16(19Q12) MUTATED | 15 | 20 | 1 | 11 |
AMP PEAK 16(19Q12) WILD-TYPE | 8 | 3 | 6 | 13 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 17(XP11.22) MUTATED | 6 | 17 | 9 | 7 | 5 | 1 | 4 |
AMP PEAK 17(XP11.22) WILD-TYPE | 13 | 1 | 4 | 11 | 6 | 5 | 1 |
P value = 0.0165 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 17(XP11.22) MUTATED | 7 | 6 | 5 | 1 | 3 | 3 | 4 | 0 |
AMP PEAK 17(XP11.22) WILD-TYPE | 1 | 1 | 2 | 2 | 1 | 1 | 2 | 6 |
P value = 0.0307 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 17(XP11.22) MUTATED | 8 | 11 | 11 | 12 |
AMP PEAK 17(XP11.22) WILD-TYPE | 16 | 3 | 5 | 11 |
P value = 0.0271 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
AMP PEAK 17(XP11.22) MUTATED | 5 | 17 | 8 | 4 | 4 | 4 |
AMP PEAK 17(XP11.22) WILD-TYPE | 1 | 7 | 3 | 10 | 7 | 7 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
AMP PEAK 18(XQ28) MUTATED | 3 | 16 | 8 | 8 | 5 | 1 | 5 |
AMP PEAK 18(XQ28) WILD-TYPE | 16 | 2 | 5 | 10 | 6 | 5 | 0 |
P value = 0.0141 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
AMP PEAK 18(XQ28) MUTATED | 6 | 5 | 1 | 10 | 6 | 10 | 2 |
AMP PEAK 18(XQ28) WILD-TYPE | 10 | 9 | 7 | 7 | 3 | 2 | 0 |
P value = 0.044 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 18(XQ28) MUTATED | 6 | 5 | 6 | 1 | 2 | 3 | 4 | 0 |
AMP PEAK 18(XQ28) WILD-TYPE | 2 | 2 | 1 | 2 | 2 | 1 | 2 | 6 |
P value = 0.00717 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
AMP PEAK 18(XQ28) MUTATED | 6 | 11 | 10 | 13 |
AMP PEAK 18(XQ28) WILD-TYPE | 18 | 3 | 6 | 10 |
P value = 0.0119 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 18(XQ28) MUTATED | 8 | 14 | 1 | 17 |
AMP PEAK 18(XQ28) WILD-TYPE | 15 | 9 | 6 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 1(1P36.23) MUTATED | 4 | 1 | 5 | 15 | 6 | 6 | 1 |
DEL PEAK 1(1P36.23) WILD-TYPE | 15 | 17 | 8 | 3 | 5 | 0 | 4 |
P value = 0.00358 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 1(1P36.23) MUTATED | 16 | 9 | 0 | 8 |
DEL PEAK 1(1P36.23) WILD-TYPE | 7 | 14 | 7 | 16 |
P value = 0.00365 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 2(2Q22.1) MUTATED | 2 | 0 | 3 | 3 | 5 | 4 | 1 |
DEL PEAK 2(2Q22.1) WILD-TYPE | 17 | 18 | 10 | 15 | 6 | 2 | 4 |
P value = 0.00313 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 3(2Q37.3) MUTATED | 2 | 0 | 4 | 5 | 5 | 4 | 1 |
DEL PEAK 3(2Q37.3) WILD-TYPE | 17 | 18 | 9 | 13 | 6 | 2 | 4 |
P value = 0.00986 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 4(3Q13.31) MUTATED | 4 | 1 | 5 | 7 | 7 | 0 | 1 |
DEL PEAK 4(3Q13.31) WILD-TYPE | 15 | 17 | 8 | 11 | 4 | 6 | 4 |
P value = 0.0402 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 4(3Q13.31) MUTATED | 7 | 10 | 2 | 2 |
DEL PEAK 4(3Q13.31) WILD-TYPE | 16 | 13 | 5 | 22 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 5(4Q34.3) MUTATED | 5 | 0 | 5 | 11 | 4 | 0 | 0 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 14 | 18 | 8 | 7 | 7 | 6 | 5 |
P value = 0.0183 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 5(4Q34.3) MUTATED | 8 | 3 | 3 | 5 | 0 | 0 | 0 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 8 | 11 | 5 | 12 | 9 | 12 | 2 |
P value = 0.0201 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
DEL PEAK 5(4Q34.3) MUTATED | 11 | 2 | 3 | 2 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 13 | 12 | 13 | 21 |
P value = 0.0391 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 5(4Q34.3) MUTATED | 10 | 5 | 1 | 2 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 13 | 18 | 6 | 22 |
P value = 0.0419 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 5(4Q34.3) MUTATED | 2 | 7 | 0 | 9 | 1 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 14 | 20 | 11 | 11 | 3 |
P value = 0.0257 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
DEL PEAK 5(4Q34.3) MUTATED | 7 | 7 | 3 | 2 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 9 | 12 | 13 | 24 |
P value = 0.00471 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 5(4Q34.3) MUTATED | 1 | 6 | 1 | 9 | 2 | 0 |
DEL PEAK 5(4Q34.3) WILD-TYPE | 5 | 18 | 10 | 5 | 9 | 11 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 6(4Q34.3) MUTATED | 4 | 0 | 3 | 14 | 4 | 2 | 1 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 15 | 18 | 10 | 4 | 7 | 4 | 4 |
P value = 0.0282 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 6(4Q34.3) MUTATED | 9 | 3 | 3 | 7 | 2 | 0 | 0 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 7 | 11 | 5 | 10 | 7 | 12 | 2 |
P value = 0.0154 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
DEL PEAK 6(4Q34.3) MUTATED | 10 | 6 | 4 | 4 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 6 | 13 | 12 | 22 |
P value = 0.0139 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 6(4Q34.3) MUTATED | 2 | 7 | 2 | 10 | 2 | 1 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 4 | 17 | 9 | 4 | 9 | 10 |
P value = 0.00079 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 7(4Q35.1) MUTATED | 4 | 1 | 4 | 13 | 5 | 1 | 2 |
DEL PEAK 7(4Q35.1) WILD-TYPE | 15 | 17 | 9 | 5 | 6 | 5 | 3 |
P value = 0.0472 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 7(4Q35.1) MUTATED | 9 | 3 | 3 | 8 | 1 | 1 | 0 |
DEL PEAK 7(4Q35.1) WILD-TYPE | 7 | 11 | 5 | 9 | 8 | 11 | 2 |
P value = 0.0415 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 7(4Q35.1) MUTATED | 10 | 10 | 1 | 3 |
DEL PEAK 7(4Q35.1) WILD-TYPE | 13 | 13 | 6 | 21 |
P value = 0.0309 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 7(4Q35.1) MUTATED | 1 | 6 | 2 | 10 | 2 | 3 |
DEL PEAK 7(4Q35.1) WILD-TYPE | 5 | 18 | 9 | 4 | 9 | 8 |
P value = 0.00099 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 8(6P24.3) MUTATED | 6 | 0 | 3 | 7 | 0 | 4 | 0 |
DEL PEAK 8(6P24.3) WILD-TYPE | 13 | 18 | 10 | 11 | 11 | 2 | 5 |
P value = 0.00068 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 9(6Q26) MUTATED | 5 | 0 | 4 | 9 | 0 | 3 | 0 |
DEL PEAK 9(6Q26) WILD-TYPE | 14 | 18 | 9 | 9 | 11 | 3 | 5 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 11(9P23) MUTATED | 7 | 0 | 0 | 12 | 3 | 0 | 1 |
DEL PEAK 11(9P23) WILD-TYPE | 12 | 18 | 13 | 6 | 8 | 6 | 4 |
P value = 0.00368 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 11(9P23) MUTATED | 9 | 5 | 3 | 3 | 0 | 0 | 0 |
DEL PEAK 11(9P23) WILD-TYPE | 7 | 9 | 5 | 14 | 9 | 12 | 2 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
DEL PEAK 11(9P23) MUTATED | 15 | 1 | 3 | 1 |
DEL PEAK 11(9P23) WILD-TYPE | 9 | 13 | 13 | 22 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 11(9P23) MUTATED | 13 | 4 | 2 | 1 |
DEL PEAK 11(9P23) WILD-TYPE | 10 | 19 | 5 | 23 |
P value = 0.0324 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 24 | 25 |
DEL PEAK 11(9P23) MUTATED | 9 | 9 | 2 |
DEL PEAK 11(9P23) WILD-TYPE | 20 | 15 | 23 |
P value = 0.0464 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 11(9P23) MUTATED | 5 | 6 | 0 | 9 | 0 |
DEL PEAK 11(9P23) WILD-TYPE | 11 | 21 | 11 | 11 | 4 |
P value = 0.00179 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
DEL PEAK 11(9P23) MUTATED | 10 | 4 | 2 | 3 |
DEL PEAK 11(9P23) WILD-TYPE | 6 | 15 | 14 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 12(9P21.3) MUTATED | 8 | 1 | 0 | 12 | 4 | 0 | 1 |
DEL PEAK 12(9P21.3) WILD-TYPE | 11 | 17 | 13 | 6 | 7 | 6 | 4 |
P value = 0.00388 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 12(9P21.3) MUTATED | 10 | 5 | 4 | 3 | 0 | 1 | 0 |
DEL PEAK 12(9P21.3) WILD-TYPE | 6 | 9 | 4 | 14 | 9 | 11 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
DEL PEAK 12(9P21.3) MUTATED | 17 | 1 | 3 | 2 |
DEL PEAK 12(9P21.3) WILD-TYPE | 7 | 13 | 13 | 21 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 12(9P21.3) MUTATED | 15 | 4 | 2 | 2 |
DEL PEAK 12(9P21.3) WILD-TYPE | 8 | 19 | 5 | 22 |
P value = 0.0437 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 12(9P21.3) MUTATED | 5 | 7 | 0 | 10 | 1 |
DEL PEAK 12(9P21.3) WILD-TYPE | 11 | 20 | 11 | 10 | 3 |
P value = 0.0112 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
DEL PEAK 12(9P21.3) MUTATED | 10 | 5 | 3 | 4 |
DEL PEAK 12(9P21.3) WILD-TYPE | 6 | 14 | 13 | 22 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 14(11P15.5) MUTATED | 2 | 2 | 5 | 4 | 6 | 6 | 1 |
DEL PEAK 14(11P15.5) WILD-TYPE | 17 | 16 | 8 | 14 | 5 | 0 | 4 |
P value = 0.0395 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 14(11P15.5) MUTATED | 4 | 11 | 0 | 8 |
DEL PEAK 14(11P15.5) WILD-TYPE | 19 | 12 | 7 | 16 |
P value = 0.00453 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 15(11Q14.1) MUTATED | 4 | 1 | 3 | 4 | 6 | 5 | 1 |
DEL PEAK 15(11Q14.1) WILD-TYPE | 15 | 17 | 10 | 14 | 5 | 1 | 4 |
P value = 0.0186 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 15(11Q14.1) MUTATED | 1 | 3 | 4 | 9 | 3 | 1 | 0 |
DEL PEAK 15(11Q14.1) WILD-TYPE | 15 | 11 | 4 | 8 | 6 | 11 | 2 |
P value = 0.00095 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 16(12Q14.2) MUTATED | 2 | 0 | 3 | 0 |
DEL PEAK 16(12Q14.2) WILD-TYPE | 21 | 23 | 4 | 24 |
P value = 0.0189 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 19 | 16 | 26 |
DEL PEAK 16(12Q14.2) MUTATED | 0 | 4 | 1 | 0 |
DEL PEAK 16(12Q14.2) WILD-TYPE | 16 | 15 | 15 | 26 |
P value = 0.00424 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 16(12Q14.2) MUTATED | 0 | 0 | 0 | 1 | 4 | 0 |
DEL PEAK 16(12Q14.2) WILD-TYPE | 6 | 24 | 11 | 13 | 7 | 11 |
P value = 0.00115 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 17(13Q14.2) MUTATED | 7 | 2 | 6 | 11 | 9 | 5 | 2 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 12 | 16 | 7 | 7 | 2 | 1 | 3 |
P value = 0.0454 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 17(13Q14.2) MUTATED | 11 | 5 | 3 | 9 | 3 | 1 | 1 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 5 | 9 | 5 | 8 | 6 | 11 | 1 |
P value = 0.0115 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 18(14Q21.2) MUTATED | 5 | 1 | 2 | 4 | 3 | 5 | 0 |
DEL PEAK 18(14Q21.2) WILD-TYPE | 14 | 17 | 11 | 14 | 8 | 1 | 5 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 19(15Q15.1) MUTATED | 2 | 1 | 3 | 11 | 3 | 5 | 0 |
DEL PEAK 19(15Q15.1) WILD-TYPE | 17 | 17 | 10 | 7 | 8 | 1 | 5 |
P value = 0.0467 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
DEL PEAK 19(15Q15.1) MUTATED | 11 | 3 | 1 | 6 |
DEL PEAK 19(15Q15.1) WILD-TYPE | 13 | 11 | 15 | 17 |
P value = 0.0482 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 19(15Q15.1) MUTATED | 1 | 7 | 2 | 10 | 1 |
DEL PEAK 19(15Q15.1) WILD-TYPE | 15 | 20 | 9 | 10 | 3 |
P value = 0.00401 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 19(15Q15.1) MUTATED | 0 | 5 | 0 | 9 | 3 | 4 |
DEL PEAK 19(15Q15.1) WILD-TYPE | 6 | 19 | 11 | 5 | 8 | 7 |
P value = 0.00782 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 20(16P13.3) MUTATED | 3 | 2 | 3 | 0 |
DEL PEAK 20(16P13.3) WILD-TYPE | 20 | 21 | 4 | 24 |
P value = 0.0157 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 21(16Q23.1) MUTATED | 5 | 0 | 0 | 5 | 0 | 0 | 1 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 14 | 18 | 13 | 13 | 11 | 6 | 4 |
P value = 0.0442 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
DEL PEAK 21(16Q23.1) MUTATED | 6 | 1 | 0 | 1 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 18 | 13 | 16 | 22 |
P value = 0.0111 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 21(16Q23.1) MUTATED | 5 | 1 | 2 | 0 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 18 | 22 | 5 | 24 |
P value = 0.0134 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 22(17Q11.2) MUTATED | 4 | 1 | 4 | 7 | 7 | 0 | 1 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 15 | 17 | 9 | 11 | 4 | 6 | 4 |
P value = 0.0431 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 22(17Q11.2) MUTATED | 6 | 4 | 3 | 9 | 0 | 1 | 0 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 10 | 10 | 5 | 8 | 9 | 11 | 2 |
P value = 0.0182 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 22(17Q11.2) MUTATED | 4 | 7 | 0 | 11 | 1 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 12 | 20 | 11 | 9 | 3 |
P value = 0.00438 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 22(17Q11.2) MUTATED | 0 | 5 | 3 | 10 | 3 | 1 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 6 | 19 | 8 | 4 | 8 | 10 |
P value = 0.0022 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 23(17Q21.2) MUTATED | 3 | 1 | 5 | 10 | 6 | 0 | 1 |
DEL PEAK 23(17Q21.2) WILD-TYPE | 16 | 17 | 8 | 8 | 5 | 6 | 4 |
P value = 0.00723 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 23(17Q21.2) MUTATED | 7 | 3 | 4 | 10 | 0 | 1 | 0 |
DEL PEAK 23(17Q21.2) WILD-TYPE | 9 | 11 | 4 | 7 | 9 | 11 | 2 |
P value = 0.035 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 23(17Q21.2) MUTATED | 9 | 11 | 1 | 3 |
DEL PEAK 23(17Q21.2) WILD-TYPE | 14 | 12 | 6 | 21 |
P value = 0.0088 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 23(17Q21.2) MUTATED | 7 | 6 | 0 | 11 | 1 |
DEL PEAK 23(17Q21.2) WILD-TYPE | 9 | 21 | 11 | 9 | 3 |
P value = 0.0103 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 24 | 11 | 14 | 11 | 11 |
DEL PEAK 23(17Q21.2) MUTATED | 2 | 5 | 4 | 10 | 2 | 1 |
DEL PEAK 23(17Q21.2) WILD-TYPE | 4 | 19 | 7 | 4 | 9 | 10 |
P value = 0.0345 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 24(17Q24.2) MUTATED | 4 | 1 | 5 | 6 | 6 | 0 | 2 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 15 | 17 | 8 | 12 | 5 | 6 | 3 |
P value = 0.00378 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 16 | 14 | 8 | 17 | 9 | 12 | 2 |
DEL PEAK 24(17Q24.2) MUTATED | 5 | 3 | 5 | 10 | 0 | 1 | 0 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 11 | 11 | 3 | 7 | 9 | 11 | 2 |
P value = 0.0396 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 24(17Q24.2) MUTATED | 8 | 11 | 1 | 3 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 15 | 12 | 6 | 21 |
P value = 0.0268 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 24(17Q24.2) MUTATED | 6 | 7 | 0 | 8 | 3 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 10 | 20 | 11 | 12 | 1 |
P value = 0.00507 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 25(20P12.1) MUTATED | 5 | 0 | 0 | 2 | 5 | 0 | 0 |
DEL PEAK 25(20P12.1) WILD-TYPE | 14 | 18 | 13 | 16 | 6 | 6 | 5 |
P value = 0.0451 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 14 | 16 | 23 |
DEL PEAK 25(20P12.1) MUTATED | 6 | 1 | 2 | 0 |
DEL PEAK 25(20P12.1) WILD-TYPE | 18 | 13 | 14 | 23 |
P value = 0.0266 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 25(20P12.1) MUTATED | 6 | 2 | 1 | 0 |
DEL PEAK 25(20P12.1) WILD-TYPE | 17 | 21 | 6 | 24 |
P value = 0.0443 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 24 | 25 |
DEL PEAK 25(20P12.1) MUTATED | 4 | 5 | 0 |
DEL PEAK 25(20P12.1) WILD-TYPE | 25 | 19 | 25 |
P value = 0.00076 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 18 | 13 | 18 | 11 | 6 | 5 |
DEL PEAK 26(22Q12.1) MUTATED | 10 | 3 | 7 | 14 | 8 | 6 | 2 |
DEL PEAK 26(22Q12.1) WILD-TYPE | 9 | 15 | 6 | 4 | 3 | 0 | 3 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/22522857/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/22541000/ACC-TP.transferedmergedcluster.txt
-
Number of patients = 90
-
Number of significantly focal cnvs = 44
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.