GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val KEGG_LYSINE_DEGRADATION 44 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_LYSINE_DEGRADATION 0.41757 1.6684 0.01852 0.16508 0.831 0.455 0.322 0.309 0.070433 0.021 KEGG_RNA_DEGRADATION 56 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_RNA_DEGRADATION 0.39182 1.8561 0.02729 0.092604 0.446 0.625 0.443 0.349 0 0.017 KEGG_DNA_REPLICATION 36 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_DNA_REPLICATION 0.58009 1.554 0.09128 0.23017 0.939 0.667 0.259 0.495 0.13865 0.026 KEGG_SPLICEOSOME 114 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_SPLICEOSOME 0.43331 1.8351 0.03644 0.093918 0.499 0.877 0.506 0.436 0 0.014 KEGG_NUCLEOTIDE_EXCISION_REPAIR 44 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_NUCLEOTIDE_EXCISION_REPAIR 0.40494 1.5186 0.1022 0.24648 0.956 0.455 0.333 0.304 0.16068 0.025 KEGG_HOMOLOGOUS_RECOMBINATION 26 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_HOMOLOGOUS_RECOMBINATION 0.6029 1.6615 0.04082 0.16802 0.84 0.577 0.239 0.44 0.074012 0.022 KEGG_CELL_CYCLE 118 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_CELL_CYCLE 0.44554 1.6148 0.0763 0.18324 0.896 0.39 0.204 0.312 0.091268 0.021 KEGG_OOCYTE_MEIOSIS 106 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_OOCYTE_MEIOSIS 0.40505 1.6288 0.0217 0.179 0.885 0.245 0.163 0.207 0.085832 0.021 BIOCARTA_CHREBP2_PATHWAY 41 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_CHREBP2_PATHWAY 0.3926 1.5348 0.05622 0.24389 0.95 0.244 0.254 0.182 0.15382 0.029 PID_FANCONI_PATHWAY 46 http://www.broadinstitute.org/gsea/msigdb/cards/PID_FANCONI_PATHWAY 0.64823 1.8735 0.006186 0.096642 0.403 0.63 0.239 0.481 0 0.02 PID_AURORA_B_PATHWAY 39 http://www.broadinstitute.org/gsea/msigdb/cards/PID_AURORA_B_PATHWAY 0.56898 1.55 0.101 0.23176 0.943 0.513 0.166 0.428 0.1429 0.025 PID_ATR_PATHWAY 39 http://www.broadinstitute.org/gsea/msigdb/cards/PID_ATR_PATHWAY 0.65972 1.8591 0.002062 0.095629 0.438 0.641 0.268 0.471 0 0.018 PID_ATM_PATHWAY 34 http://www.broadinstitute.org/gsea/msigdb/cards/PID_ATM_PATHWAY 0.53055 1.8723 0.01633 0.092269 0.405 0.412 0.27 0.301 0 0.02 PID_LKB1_PATHWAY 47 http://www.broadinstitute.org/gsea/msigdb/cards/PID_LKB1_PATHWAY 0.37967 1.6365 0.04139 0.17839 0.885 0.0851 0.0259 0.0831 0.084276 0.025 PID_PLK1_PATHWAY 45 http://www.broadinstitute.org/gsea/msigdb/cards/PID_PLK1_PATHWAY 0.7052 1.8371 0.01237 0.096384 0.492 0.511 0.158 0.432 0 0.016 PID_BARD1PATHWAY 29 http://www.broadinstitute.org/gsea/msigdb/cards/PID_BARD1PATHWAY 0.56068 1.7016 0.04065 0.15119 0.771 0.448 0.226 0.348 0.058886 0.023 REACTOME_METABOLISM_OF_NON_CODING_RNA 47 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_METABOLISM_OF_NON_CODING_RNA 0.53783 1.9897 0.02353 0.092613 0.195 0.745 0.401 0.447 0 0.023 REACTOME_MEIOSIS 101 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MEIOSIS 0.64991 1.6174 0.04792 0.18418 0.893 0.604 0.244 0.459 0.091864 0.021 REACTOME_CELL_CYCLE 379 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE 0.52141 1.8764 0.02178 0.10031 0.395 0.443 0.244 0.342 0 0.021 REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 126 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA 0.48368 1.9743 0.01765 0.091362 0.216 0.754 0.445 0.422 0 0.022 REACTOME_TRANSPORT_OF_MATURE_TRANSCRIPT_TO_CYTOPLASM 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSPORT_OF_MATURE_TRANSCRIPT_TO_CYTOPLASM 0.50489 1.8089 0.03593 0.096719 0.552 0.773 0.445 0.43 0.022836 0.013 REACTOME_RNA_POL_II_TRANSCRIPTION 93 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_TRANSCRIPTION 0.45507 2.1302 0.008214 0.067294 0.064 0.71 0.454 0.39 0 0.013 REACTOME_RNA_POL_III_TRANSCRIPTION 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_III_TRANSCRIPTION 0.50361 2.1092 0.004264 0.058659 0.076 0.758 0.428 0.434 0 0.01 REACTOME_MRNA_CAPPING 29 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_CAPPING 0.48839 1.7899 0.02772 0.099539 0.59 0.69 0.433 0.392 0.025427 0.011 REACTOME_CELL_CYCLE_MITOTIC 297 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE_MITOTIC 0.49699 1.7761 0.05837 0.10604 0.627 0.424 0.244 0.326 0.028397 0.013 REACTOME_RECRUITMENT_OF_MITOTIC_CENTROSOME_PROTEINS_AND_COMPLEXES 59 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RECRUITMENT_OF_MITOTIC_CENTROSOME_PROTEINS_AND_COMPLEXES 0.47151 1.9901 0.004141 0.10764 0.195 0.458 0.297 0.323 0 0.029 REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES 52 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_LOSS_OF_NLP_FROM_MITOTIC_CENTROSOMES 0.48497 1.9466 0.01245 0.092165 0.256 0.481 0.297 0.339 0 0.024 REACTOME_TRANSCRIPTION_COUPLED_NER_TC_NER 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSCRIPTION_COUPLED_NER_TC_NER 0.45785 1.7024 0.05985 0.15902 0.769 0.727 0.421 0.422 0.060315 0.026 REACTOME_RNA_POL_II_TRANSCRIPTION_PRE_INITIATION_AND_PROMOTER_OPENING 40 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_TRANSCRIPTION_PRE_INITIATION_AND_PROMOTER_OPENING 0.46975 1.7608 0.03448 0.11409 0.661 0.65 0.439 0.366 0.033595 0.017 REACTOME_MRNA_PROCESSING 144 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_PROCESSING 0.47116 2.184 0.007828 0.06339 0.039 0.764 0.456 0.419 0 0.014 REACTOME_MRNA_SPLICING 97 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_SPLICING 0.47205 1.7918 0.03502 0.10509 0.589 0.753 0.445 0.42 0.026881 0.013 REACTOME_G1_S_TRANSITION 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G1_S_TRANSITION 0.47284 1.5303 0.1285 0.24594 0.951 0.34 0.204 0.272 0.15789 0.028 REACTOME_TRANSCRIPTION 188 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSCRIPTION 0.49291 1.6555 0.05769 0.16239 0.853 0.612 0.387 0.379 0.072704 0.021 REACTOME_NUCLEOTIDE_EXCISION_REPAIR 49 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NUCLEOTIDE_EXCISION_REPAIR 0.422 1.6598 0.08092 0.16558 0.845 0.653 0.421 0.379 0.073742 0.022 REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRONLESS_TRANSCRIPT 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSPORT_OF_MATURE_MRNA_DERIVED_FROM_AN_INTRONLESS_TRANSCRIPT 0.55873 1.8768 0.01796 0.10669 0.394 0.727 0.372 0.457 0 0.024 REACTOME_FORMATION_OF_RNA_POL_II_ELONGATION_COMPLEX_ 43 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_RNA_POL_II_ELONGATION_COMPLEX_ 0.43223 1.855 0.01804 0.088922 0.447 0.628 0.433 0.357 0 0.015 REACTOME_MRNA_3_END_PROCESSING 25 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_3_END_PROCESSING 0.4821 1.603 0.04183 0.19327 0.906 0.76 0.445 0.423 0.10304 0.021 REACTOME_ELONGATION_ARREST_AND_RECOVERY 31 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ELONGATION_ARREST_AND_RECOVERY 0.37892 1.5623 0.04183 0.22453 0.933 0.613 0.45 0.338 0.13511 0.024 REACTOME_FORMATION_OF_TRANSCRIPTION_COUPLED_NER_TC_NER_REPAIR_COMPLEX 29 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_TRANSCRIPTION_COUPLED_NER_TC_NER_REPAIR_COMPLEX 0.45035 1.6934 0.03937 0.15479 0.787 0.655 0.433 0.372 0.062269 0.022 REACTOME_GLUCOSE_TRANSPORT 37 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_GLUCOSE_TRANSPORT 0.39938 1.5246 0.07036 0.24575 0.952 0.595 0.337 0.395 0.16135 0.028 REACTOME_MITOTIC_G1_G1_S_PHASES 124 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_G1_G1_S_PHASES 0.45177 1.5957 0.09848 0.19814 0.914 0.339 0.204 0.271 0.10737 0.02 REACTOME_MITOTIC_M_M_G1_PHASES 161 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_M_M_G1_PHASES 0.54413 1.7024 0.0699 0.1545 0.769 0.404 0.21 0.322 0.058968 0.024 REACTOME_RNA_POL_I_RNA_POL_III_AND_MITOCHONDRIAL_TRANSCRIPTION 111 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_I_RNA_POL_III_AND_MITOCHONDRIAL_TRANSCRIPTION 0.572 1.5283 0.09454 0.24458 0.951 0.64 0.321 0.437 0.15806 0.027 REACTOME_MITOTIC_G2_G2_M_PHASES 74 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_G2_G2_M_PHASES 0.52536 2.0445 0.005976 0.084529 0.138 0.5 0.287 0.358 0 0.02 REACTOME_DNA_REPAIR 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPAIR 0.45929 1.8797 0.02236 0.1118 0.386 0.495 0.328 0.335 0 0.025 REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 59 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 0.44413 1.898 0.01232 0.11282 0.348 0.644 0.439 0.363 0 0.028 REACTOME_CHROMOSOME_MAINTENANCE 109 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CHROMOSOME_MAINTENANCE 0.62252 1.685 0.02075 0.15889 0.803 0.615 0.244 0.468 0.065736 0.022 REACTOME_DEPOSITION_OF_NEW_CENPA_CONTAINING_NUCLEOSOMES_AT_THE_CENTROMERE 55 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DEPOSITION_OF_NEW_CENPA_CONTAINING_NUCLEOSOMES_AT_THE_CENTROMERE 0.71238 1.5237 0.06105 0.24326 0.953 0.764 0.24 0.582 0.15994 0.025 REACTOME_GLOBAL_GENOMIC_NER_GG_NER 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_GLOBAL_GENOMIC_NER_GG_NER 0.4607 1.538 0.09441 0.24384 0.947 0.545 0.328 0.367 0.15388 0.029 REACTOME_TRANSPORT_TO_THE_GOLGI_AND_SUBSEQUENT_MODIFICATION 32 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSPORT_TO_THE_GOLGI_AND_SUBSEQUENT_MODIFICATION 0.53156 1.6215 0.02857 0.18321 0.89 0.188 0.0991 0.169 0.091025 0.021 REACTOME_MEIOTIC_RECOMBINATION 75 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MEIOTIC_RECOMBINATION 0.70824 1.5813 0.04802 0.20847 0.925 0.72 0.24 0.55 0.11772 0.021 REACTOME_DNA_REPLICATION 181 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPLICATION 0.5333 1.6693 0.07617 0.16809 0.83 0.464 0.244 0.354 0.070503 0.024 REACTOME_CLEAVAGE_OF_GROWING_TRANSCRIPT_IN_THE_TERMINATION_REGION_ 34 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CLEAVAGE_OF_GROWING_TRANSCRIPT_IN_THE_TERMINATION_REGION_ 0.48268 1.733 0.02595 0.13351 0.723 0.794 0.454 0.435 0.046607 0.021 REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION 27 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_E2F_MEDIATED_REGULATION_OF_DNA_REPLICATION 0.66736 1.6783 0.04449 0.1621 0.817 0.63 0.204 0.502 0.066736 0.023 REACTOME_RNA_POL_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER 26 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER 0.47374 1.8213 0.01895 0.091681 0.523 0.692 0.428 0.397 0.020932 0.013 REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY 27 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NEP_NS2_INTERACTS_WITH_THE_CELLULAR_EXPORT_MACHINERY 0.58799 1.8335 0.02204 0.091107 0.506 0.815 0.372 0.512 0.02049 0.014 REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS 27 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRANSPORT_OF_RIBONUCLEOPROTEINS_INTO_THE_HOST_NUCLEUS 0.58454 1.8236 0.01623 0.093698 0.519 0.778 0.372 0.489 0.021521 0.013 REACTOME_HIV_LIFE_CYCLE 114 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HIV_LIFE_CYCLE 0.385 1.8936 0.02846 0.10708 0.356 0.605 0.433 0.345 0 0.024 REACTOME_FORMATION_OF_THE_HIV1_EARLY_ELONGATION_COMPLEX 33 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_FORMATION_OF_THE_HIV1_EARLY_ELONGATION_COMPLEX 0.47187 1.7917 0.02579 0.1015 0.59 0.667 0.45 0.368 0.026058 0.011 REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 101 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 0.46241 2.1926 0.002024 0.11241 0.034 0.634 0.433 0.361 0 0.023 REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS 32 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS 0.54776 1.9237 0.01996 0.1004 0.303 0.656 0.372 0.413 0 0.022 REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS 29 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATION_OF_ATR_IN_RESPONSE_TO_REPLICATION_STRESS 0.66618 1.5756 0.05556 0.21191 0.927 0.759 0.268 0.557 0.11857 0.021 REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN 27 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_GLUCOKINASE_BY_GLUCOKINASE_REGULATORY_PROTEIN 0.59313 1.9562 0.004228 0.095098 0.246 0.815 0.372 0.512 0 0.024 REACTOME_MITOTIC_PROMETAPHASE 85 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_PROMETAPHASE 0.58402 1.6312 0.06814 0.18023 0.885 0.624 0.301 0.438 0.086572 0.023 REACTOME_TELOMERE_MAINTENANCE 70 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TELOMERE_MAINTENANCE 0.66139 1.583 0.0587 0.21032 0.924 0.686 0.244 0.52 0.11672 0.023 REACTOME_G2_M_CHECKPOINTS 35 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G2_M_CHECKPOINTS 0.6721 1.6564 0.03522 0.16495 0.85 0.743 0.268 0.545 0.074 0.021