This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 63 focal events and 39 clinical features across 295 patients, 25 significant findings detected with Q value < 0.25.
-
amp_11q22.1 cnv correlated to 'YEARS_TO_BIRTH', 'MENOPAUSE_STATUS', 'INITIAL_PATHOLOGIC_DX_YEAR', and 'AGE_AT_DIAGNOSIS'.
-
amp_19p13.2 cnv correlated to 'KERATINIZATION_SQUAMOUS_CELL'.
-
del_3p22.1 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_OF_LYMPH_NODES', 'LYMPHOVASCULAR_INVOLVEMENT', and 'LYMPH_NODES_EXAMINED_HE_COUNT'.
-
del_3p14.2 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_4p16.3 cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_OF_LYMPH_NODES', and 'LYMPH_NODES_EXAMINED_HE_COUNT'.
-
del_4q22.1 cnv correlated to 'RADIATION_THERAPY' and 'NEOPLASM_HISTOLOGIC_GRADE'.
-
del_6q26 cnv correlated to 'INITIAL_PATHOLOGIC_DX_YEAR'.
-
del_10q23.31 cnv correlated to 'YEARS_TO_BIRTH' and 'AGE_AT_DIAGNOSIS'.
-
del_11p15.1 cnv correlated to 'AGE_AT_DIAGNOSIS'.
-
del_16q11.2 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_16q23.1 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_18q21.2 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_19p13.3 cnv correlated to 'TUMOR_STATUS'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
RADIATION THERAPY |
HISTOLOGICAL TYPE |
NUMBER PACK YEARS SMOKED |
NUMBER OF LYMPH NODES |
RACE | ETHNICITY |
WEIGHT KG AT DIAGNOSIS |
TUMOR STATUS |
NEOPLASM HISTOLOGIC GRADE |
TOBACCO SMOKING YEAR STOPPED |
TOBACCO SMOKING PACK YEARS SMOKED |
TOBACCO SMOKING HISTORY |
AGEBEGANSMOKINGINYEARS |
RADIATION THERAPY STATUS |
PREGNANCIES COUNT TOTAL |
PREGNANCIES COUNT STILLBIRTH |
PREGNANCY SPONTANEOUS ABORTION COUNT |
PREGNANCIES COUNT LIVE BIRTH |
PREGNANCY THERAPEUTIC ABORTION COUNT |
PREGNANCIES COUNT ECTOPIC |
POS LYMPH NODE LOCATION |
MENOPAUSE STATUS |
LYMPHOVASCULAR INVOLVEMENT |
LYMPH NODES EXAMINED HE COUNT |
LYMPH NODES EXAMINED |
KERATINIZATION SQUAMOUS CELL |
INITIAL PATHOLOGIC DX YEAR |
HISTORY HORMONAL CONTRACEPTIVES USE |
HEIGHT CM AT DIAGNOSIS |
CORPUS INVOLVEMENT |
CHEMO CONCURRENT TYPE |
CERVIX SUV RESULTS |
AGE AT DIAGNOSIS |
CLINICAL STAGE |
||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | |
del 3p22 1 | 113 (38%) | 182 |
0.188 (0.788) |
0.924 (1.00) |
0.0862 (0.654) |
0.000706 (0.153) |
0.742 (1) |
0.312 (0.888) |
0.00018 (0.0442) |
0.544 (0.961) |
3.18e-05 (0.0156) |
0.621 (0.968) |
0.356 (0.909) |
0.377 (0.922) |
0.0688 (0.635) |
0.408 (0.927) |
0.189 (0.788) |
0.544 (0.961) |
0.0475 (0.541) |
0.338 (0.9) |
1 (1.00) |
0.507 (0.957) |
0.278 (0.864) |
0.728 (0.996) |
0.761 (1.00) |
0.606 (0.967) |
0.165 (0.761) |
0.0905 (0.667) |
0.814 (1.00) |
0.0017 (0.205) |
3.18e-05 (0.0156) |
0.462 (0.953) |
0.387 (0.922) |
0.00405 (0.308) |
0.0763 (0.648) |
0.218 (0.816) |
0.104 (0.678) |
0.826 (1.00) |
0.063 (0.619) |
0.846 (1.00) |
0.0494 (0.541) |
amp 11q22 1 | 47 (16%) | 248 |
0.624 (0.968) |
0.000111 (0.0304) |
0.389 (0.922) |
1 (1.00) |
1 (1.00) |
0.641 (0.974) |
0.688 (0.986) |
0.0211 (0.427) |
0.965 (1.00) |
0.0238 (0.446) |
0.38 (0.922) |
0.285 (0.871) |
0.856 (1.00) |
0.0254 (0.459) |
0.279 (0.866) |
0.0211 (0.427) |
0.779 (1.00) |
0.69 (0.986) |
1 (1.00) |
0.947 (1.00) |
0.23 (0.828) |
0.512 (0.957) |
0.994 (1.00) |
0.436 (0.948) |
0.351 (0.907) |
0.947 (1.00) |
0.0023 (0.235) |
0.519 (0.957) |
0.965 (1.00) |
0.434 (0.948) |
0.274 (0.864) |
0.00252 (0.248) |
0.72 (0.995) |
0.172 (0.77) |
0.191 (0.788) |
0.308 (0.888) |
0.147 (0.745) |
9.19e-05 (0.0282) |
0.602 (0.966) |
del 4p16 3 | 127 (43%) | 168 |
0.442 (0.949) |
0.698 (0.99) |
0.136 (0.719) |
0.00175 (0.205) |
0.178 (0.773) |
0.00466 (0.318) |
9e-05 (0.0282) |
0.616 (0.968) |
0.00111 (0.181) |
0.281 (0.868) |
0.823 (1.00) |
0.31 (0.888) |
0.413 (0.928) |
0.202 (0.796) |
0.426 (0.942) |
0.616 (0.968) |
0.0928 (0.667) |
0.737 (0.999) |
1 (1.00) |
0.0769 (0.648) |
0.778 (1.00) |
0.941 (1.00) |
0.0522 (0.553) |
0.262 (0.857) |
0.525 (0.957) |
0.77 (1.00) |
1 (1.00) |
0.231 (0.828) |
0.00111 (0.181) |
0.256 (0.857) |
0.236 (0.835) |
0.04 (0.513) |
0.761 (1.00) |
0.376 (0.922) |
0.597 (0.966) |
0.679 (0.986) |
0.885 (1.00) |
0.701 (0.991) |
0.141 (0.73) |
del 4q22 1 | 100 (34%) | 195 |
0.378 (0.922) |
0.867 (1.00) |
0.23 (0.828) |
0.0846 (0.651) |
0.304 (0.885) |
0.00204 (0.218) |
0.0404 (0.513) |
0.61 (0.967) |
0.0417 (0.516) |
0.248 (0.85) |
0.636 (0.972) |
0.0288 (0.475) |
0.391 (0.922) |
0.00175 (0.205) |
0.208 (0.804) |
0.61 (0.967) |
0.216 (0.816) |
0.714 (0.994) |
0.543 (0.961) |
0.893 (1.00) |
0.651 (0.979) |
0.717 (0.995) |
0.369 (0.921) |
0.778 (1.00) |
0.585 (0.966) |
0.122 (0.7) |
0.963 (1.00) |
0.274 (0.864) |
0.0417 (0.516) |
0.485 (0.956) |
0.858 (1.00) |
0.287 (0.872) |
0.59 (0.966) |
0.855 (1.00) |
0.391 (0.922) |
0.827 (1.00) |
0.157 (0.745) |
0.885 (1.00) |
0.539 (0.961) |
del 10q23 31 | 86 (29%) | 209 |
0.408 (0.927) |
0.000904 (0.171) |
0.353 (0.907) |
0.271 (0.861) |
0.706 (0.991) |
0.471 (0.953) |
0.981 (1.00) |
0.949 (1.00) |
0.0998 (0.672) |
0.0164 (0.425) |
1 (1.00) |
0.369 (0.921) |
0.0724 (0.642) |
0.00882 (0.384) |
0.266 (0.857) |
0.949 (1.00) |
0.0247 (0.453) |
0.127 (0.703) |
1 (1.00) |
0.0817 (0.651) |
0.842 (1.00) |
0.701 (0.991) |
0.0103 (0.384) |
0.815 (1.00) |
0.698 (0.99) |
0.0273 (0.472) |
0.0187 (0.427) |
0.198 (0.79) |
0.0998 (0.672) |
0.242 (0.845) |
0.0909 (0.667) |
0.016 (0.424) |
0.526 (0.957) |
0.241 (0.845) |
0.767 (1.00) |
1 (1.00) |
0.526 (0.957) |
0.00121 (0.186) |
0.398 (0.925) |
amp 19p13 2 | 43 (15%) | 252 |
0.0564 (0.57) |
0.53 (0.957) |
0.539 (0.961) |
0.532 (0.957) |
1 (1.00) |
1 (1.00) |
0.589 (0.966) |
0.863 (1.00) |
0.464 (0.953) |
0.588 (0.966) |
0.744 (1) |
0.972 (1.00) |
0.336 (0.899) |
0.874 (1.00) |
0.382 (0.922) |
0.863 (1.00) |
0.667 (0.985) |
0.0487 (0.541) |
1 (1.00) |
0.609 (0.967) |
0.816 (1.00) |
0.204 (0.799) |
0.164 (0.761) |
0.652 (0.979) |
0.166 (0.761) |
0.921 (1.00) |
0.567 (0.966) |
0.811 (1.00) |
0.464 (0.953) |
0.228 (0.828) |
0.00151 (0.205) |
0.352 (0.907) |
0.535 (0.959) |
0.128 (0.703) |
0.12 (0.7) |
0.636 (0.972) |
0.571 (0.966) |
0.466 (0.953) |
0.783 (1.00) |
del 3p14 2 | 134 (45%) | 161 |
0.782 (1.00) |
0.993 (1.00) |
0.0308 (0.492) |
0.00575 (0.333) |
0.752 (1.00) |
0.136 (0.719) |
6e-05 (0.0246) |
0.61 (0.967) |
0.00323 (0.274) |
0.872 (1.00) |
0.263 (0.857) |
0.0114 (0.384) |
0.173 (0.772) |
0.129 (0.708) |
0.0982 (0.672) |
0.61 (0.967) |
0.0329 (0.5) |
0.639 (0.974) |
1 (1.00) |
0.8 (1.00) |
0.15 (0.745) |
0.488 (0.957) |
0.851 (1.00) |
0.812 (1.00) |
0.151 (0.745) |
0.123 (0.701) |
0.969 (1.00) |
0.00574 (0.333) |
0.00323 (0.274) |
0.349 (0.907) |
0.394 (0.922) |
0.0166 (0.425) |
0.0459 (0.532) |
0.666 (0.985) |
0.596 (0.966) |
0.682 (0.986) |
0.063 (0.619) |
0.987 (1.00) |
0.0384 (0.513) |
del 6q26 | 100 (34%) | 195 |
0.0826 (0.651) |
0.65 (0.979) |
0.786 (1.00) |
0.604 (0.967) |
1 (1.00) |
1 (1.00) |
0.303 (0.885) |
0.407 (0.927) |
0.384 (0.922) |
0.245 (0.847) |
0.342 (0.906) |
0.514 (0.957) |
0.563 (0.963) |
0.0792 (0.65) |
0.125 (0.703) |
0.407 (0.927) |
0.544 (0.961) |
0.969 (1.00) |
0.536 (0.959) |
0.625 (0.968) |
0.417 (0.935) |
0.15 (0.745) |
0.532 (0.957) |
0.475 (0.953) |
0.967 (1.00) |
0.578 (0.966) |
0.111 (0.689) |
0.598 (0.966) |
0.384 (0.922) |
0.24 (0.845) |
0.855 (1.00) |
0.000747 (0.153) |
0.686 (0.986) |
0.0327 (0.5) |
0.596 (0.966) |
0.474 (0.953) |
0.089 (0.666) |
0.591 (0.966) |
0.365 (0.919) |
del 11p15 1 | 102 (35%) | 193 |
0.499 (0.957) |
0.00308 (0.274) |
0.532 (0.957) |
0.387 (0.922) |
0.494 (0.957) |
1 (1.00) |
0.112 (0.689) |
0.229 (0.828) |
0.177 (0.773) |
0.105 (0.678) |
0.649 (0.979) |
0.227 (0.828) |
0.201 (0.794) |
0.0974 (0.672) |
0.516 (0.957) |
0.229 (0.828) |
0.63 (0.97) |
0.327 (0.892) |
0.551 (0.963) |
0.1 (0.672) |
0.0531 (0.554) |
0.512 (0.957) |
0.127 (0.703) |
0.901 (1.00) |
0.0124 (0.396) |
0.649 (0.979) |
0.0102 (0.384) |
0.375 (0.922) |
0.177 (0.773) |
0.499 (0.957) |
0.719 (0.995) |
0.803 (1.00) |
0.0748 (0.648) |
0.13 (0.709) |
1 (1.00) |
0.205 (0.799) |
0.958 (1.00) |
0.00193 (0.215) |
0.167 (0.761) |
del 16q11 2 | 53 (18%) | 242 |
0.803 (1.00) |
0.406 (0.927) |
0.841 (1.00) |
0.0156 (0.422) |
1 (1.00) |
0.297 (0.881) |
1e-05 (0.0123) |
0.265 (0.857) |
0.0762 (0.648) |
0.402 (0.927) |
0.771 (1.00) |
0.894 (1.00) |
1 (1.00) |
0.489 (0.957) |
0.491 (0.957) |
0.265 (0.857) |
0.235 (0.835) |
0.22 (0.816) |
1 (1.00) |
0.305 (0.885) |
0.888 (1.00) |
0.518 (0.957) |
0.591 (0.966) |
0.962 (1.00) |
0.0865 (0.654) |
0.766 (1.00) |
0.152 (0.745) |
0.402 (0.927) |
0.0762 (0.648) |
0.761 (1.00) |
0.0717 (0.642) |
0.743 (1) |
0.797 (1.00) |
0.504 (0.957) |
0.113 (0.689) |
1 (1.00) |
0.342 (0.906) |
0.446 (0.951) |
|
del 16q23 1 | 55 (19%) | 240 |
0.409 (0.927) |
0.245 (0.847) |
0.928 (1.00) |
0.316 (0.888) |
0.686 (0.986) |
0.834 (1.00) |
3e-05 (0.0156) |
0.265 (0.857) |
0.39 (0.922) |
0.00716 (0.384) |
0.378 (0.922) |
0.5 (0.957) |
0.602 (0.966) |
0.226 (0.828) |
0.616 (0.968) |
0.265 (0.857) |
0.437 (0.948) |
0.983 (1.00) |
0.551 (0.963) |
0.105 (0.678) |
0.888 (1.00) |
0.46 (0.953) |
0.439 (0.949) |
0.0277 (0.472) |
0.318 (0.888) |
1 (1.00) |
0.805 (1.00) |
0.667 (0.985) |
0.39 (0.922) |
0.939 (1.00) |
0.14 (0.727) |
0.428 (0.943) |
0.912 (1.00) |
0.383 (0.922) |
0.519 (0.957) |
1 (1.00) |
0.206 (0.801) |
0.979 (1.00) |
|
del 18q21 2 | 82 (28%) | 213 |
0.76 (1.00) |
0.561 (0.963) |
0.619 (0.968) |
0.355 (0.908) |
0.149 (0.745) |
0.588 (0.966) |
1e-05 (0.0123) |
0.588 (0.966) |
0.0506 (0.544) |
0.909 (1.00) |
0.603 (0.967) |
0.144 (0.735) |
0.291 (0.876) |
0.254 (0.857) |
0.975 (1.00) |
0.588 (0.966) |
0.0545 (0.558) |
0.385 (0.922) |
1 (1.00) |
0.0926 (0.667) |
0.126 (0.703) |
0.803 (1.00) |
0.174 (0.773) |
0.854 (1.00) |
0.9 (1.00) |
0.752 (1.00) |
0.712 (0.993) |
0.0494 (0.541) |
0.0506 (0.544) |
0.872 (1.00) |
0.68 (0.986) |
0.0214 (0.427) |
0.628 (0.97) |
0.428 (0.943) |
0.0386 (0.513) |
0.123 (0.701) |
0.514 (0.957) |
0.0699 (0.638) |
|
del 19p13 3 | 105 (36%) | 190 |
0.00426 (0.308) |
0.623 (0.968) |
0.588 (0.966) |
0.864 (1.00) |
0.723 (0.995) |
0.314 (0.888) |
0.315 (0.888) |
0.382 (0.922) |
0.974 (1.00) |
0.168 (0.761) |
0.0651 (0.63) |
0.509 (0.957) |
0.00169 (0.205) |
0.116 (0.689) |
0.592 (0.966) |
0.382 (0.922) |
0.96 (1.00) |
0.589 (0.966) |
1 (1.00) |
0.999 (1.00) |
0.101 (0.672) |
0.358 (0.912) |
0.656 (0.981) |
0.127 (0.703) |
0.681 (0.986) |
0.712 (0.993) |
0.418 (0.936) |
0.479 (0.953) |
0.974 (1.00) |
0.556 (0.963) |
0.367 (0.919) |
0.497 (0.957) |
0.968 (1.00) |
0.107 (0.678) |
1 (1.00) |
0.829 (1.00) |
0.082 (0.651) |
0.558 (0.963) |
0.994 (1.00) |
amp 1p31 3 | 96 (33%) | 199 |
0.244 (0.847) |
0.00423 (0.308) |
0.336 (0.899) |
0.86 (1.00) |
0.497 (0.957) |
0.862 (1.00) |
0.244 (0.847) |
0.193 (0.788) |
0.539 (0.961) |
0.471 (0.953) |
0.1 (0.672) |
0.767 (1.00) |
0.563 (0.963) |
0.878 (1.00) |
0.596 (0.966) |
0.193 (0.788) |
0.719 (0.995) |
0.825 (1.00) |
1 (1.00) |
0.0116 (0.384) |
0.386 (0.922) |
0.875 (1.00) |
0.271 (0.861) |
0.149 (0.745) |
0.93 (1.00) |
0.476 (0.953) |
0.0206 (0.427) |
0.861 (1.00) |
0.539 (0.961) |
0.518 (0.957) |
0.375 (0.922) |
0.501 (0.957) |
0.042 (0.516) |
0.36 (0.912) |
0.777 (1.00) |
0.788 (1.00) |
0.464 (0.953) |
0.00355 (0.291) |
0.394 (0.922) |
amp 1q21 3 | 158 (54%) | 137 |
0.464 (0.953) |
0.24 (0.845) |
0.0288 (0.475) |
0.635 (0.972) |
0.182 (0.778) |
0.512 (0.957) |
0.241 (0.845) |
0.722 (0.995) |
0.6 (0.966) |
0.00518 (0.329) |
0.505 (0.957) |
0.172 (0.772) |
0.138 (0.72) |
0.376 (0.922) |
0.723 (0.995) |
0.722 (0.995) |
0.885 (1.00) |
0.597 (0.966) |
0.56 (0.963) |
0.14 (0.727) |
0.482 (0.953) |
0.537 (0.96) |
0.219 (0.816) |
0.962 (1.00) |
0.00536 (0.329) |
0.734 (0.998) |
0.616 (0.968) |
0.62 (0.968) |
0.6 (0.966) |
0.914 (1.00) |
1 (1.00) |
0.733 (0.998) |
0.278 (0.864) |
0.0438 (0.526) |
0.612 (0.967) |
0.345 (0.906) |
0.291 (0.876) |
0.198 (0.79) |
0.329 (0.895) |
amp 2p24 3 | 79 (27%) | 216 |
0.811 (1.00) |
0.929 (1.00) |
0.615 (0.968) |
0.715 (0.995) |
0.48 (0.953) |
0.27 (0.861) |
0.544 (0.961) |
0.168 (0.761) |
0.476 (0.953) |
0.501 (0.957) |
1 (1.00) |
0.468 (0.953) |
0.543 (0.961) |
0.451 (0.953) |
0.138 (0.72) |
0.168 (0.761) |
0.474 (0.953) |
0.68 (0.986) |
1 (1.00) |
0.412 (0.927) |
0.178 (0.773) |
0.265 (0.857) |
0.409 (0.927) |
0.759 (1.00) |
0.0727 (0.642) |
0.795 (1.00) |
0.968 (1.00) |
0.706 (0.991) |
0.476 (0.953) |
0.609 (0.967) |
0.844 (1.00) |
0.822 (1.00) |
0.578 (0.966) |
0.665 (0.985) |
0.391 (0.922) |
0.5 (0.957) |
0.014 (0.417) |
0.897 (1.00) |
0.397 (0.924) |
amp 2q33 1 | 41 (14%) | 254 |
0.965 (1.00) |
0.29 (0.876) |
0.873 (1.00) |
0.0793 (0.65) |
1 (1.00) |
0.641 (0.974) |
0.553 (0.963) |
0.788 (1.00) |
0.0373 (0.513) |
0.309 (0.888) |
0.744 (1) |
0.0496 (0.541) |
0.848 (1.00) |
0.833 (1.00) |
0.447 (0.951) |
0.788 (1.00) |
0.915 (1.00) |
0.0667 (0.633) |
0.459 (0.953) |
0.633 (0.971) |
0.333 (0.896) |
0.684 (0.986) |
0.592 (0.966) |
0.559 (0.963) |
0.0206 (0.427) |
0.806 (1.00) |
0.624 (0.968) |
0.0478 (0.541) |
0.0373 (0.513) |
0.486 (0.957) |
0.605 (0.967) |
0.128 (0.703) |
0.213 (0.813) |
0.577 (0.966) |
0.411 (0.927) |
0.23 (0.828) |
0.268 (0.86) |
0.722 (0.995) |
|
amp 3q26 31 | 227 (77%) | 68 |
0.908 (1.00) |
0.779 (1.00) |
0.26 (0.857) |
0.0407 (0.513) |
1 (1.00) |
0.0676 (0.633) |
0.0101 (0.384) |
0.961 (1.00) |
0.013 (0.399) |
0.0157 (0.422) |
0.444 (0.951) |
0.116 (0.689) |
0.748 (1.00) |
0.811 (1.00) |
0.74 (1) |
0.961 (1.00) |
0.341 (0.906) |
0.0498 (0.541) |
0.382 (0.922) |
0.021 (0.427) |
0.147 (0.745) |
0.834 (1.00) |
0.0936 (0.667) |
0.471 (0.953) |
0.0484 (0.541) |
0.0854 (0.654) |
0.488 (0.957) |
0.249 (0.85) |
0.013 (0.399) |
0.572 (0.966) |
0.689 (0.986) |
0.551 (0.963) |
1 (1.00) |
0.249 (0.85) |
1 (1.00) |
0.0396 (0.513) |
0.836 (1.00) |
0.892 (1.00) |
|
amp 4q12 | 21 (7%) | 274 |
0.269 (0.86) |
0.553 (0.963) |
0.0423 (0.516) |
0.364 (0.917) |
0.519 (0.957) |
1 (1.00) |
0.413 (0.928) |
0.987 (1.00) |
0.827 (1.00) |
0.434 (0.948) |
1 (1.00) |
0.404 (0.927) |
1 (1.00) |
0.0957 (0.672) |
0.0683 (0.633) |
0.987 (1.00) |
0.313 (0.888) |
0.676 (0.986) |
1 (1.00) |
0.39 (0.922) |
0.515 (0.957) |
0.625 (0.968) |
0.282 (0.868) |
0.444 (0.951) |
0.786 (1.00) |
0.722 (0.995) |
0.697 (0.99) |
0.209 (0.805) |
0.827 (1.00) |
0.846 (1.00) |
0.725 (0.996) |
0.266 (0.857) |
0.0512 (0.544) |
0.77 (1.00) |
0.587 (0.966) |
1 (1.00) |
0.571 (0.966) |
0.572 (0.966) |
0.0726 (0.642) |
amp 5p15 33 | 138 (47%) | 157 |
0.991 (1.00) |
0.618 (0.968) |
0.174 (0.773) |
1 (1.00) |
0.0949 (0.671) |
0.143 (0.733) |
0.0103 (0.384) |
0.549 (0.963) |
0.894 (1.00) |
0.7 (0.991) |
0.269 (0.86) |
0.981 (1.00) |
0.683 (0.986) |
0.0406 (0.513) |
0.971 (1.00) |
0.549 (0.963) |
0.338 (0.9) |
0.446 (0.951) |
0.56 (0.963) |
0.205 (0.799) |
0.583 (0.966) |
0.872 (1.00) |
0.0102 (0.384) |
0.0896 (0.667) |
0.525 (0.957) |
0.582 (0.966) |
0.89 (1.00) |
0.495 (0.957) |
0.894 (1.00) |
0.114 (0.689) |
0.125 (0.703) |
0.394 (0.922) |
0.787 (1.00) |
0.946 (1.00) |
1 (1.00) |
0.0203 (0.427) |
0.665 (0.985) |
0.709 (0.992) |
0.0111 (0.384) |
amp 6p21 33 | 82 (28%) | 213 |
0.405 (0.927) |
0.866 (1.00) |
0.908 (1.00) |
0.477 (0.953) |
1 (1.00) |
0.859 (1.00) |
0.374 (0.922) |
0.155 (0.745) |
0.551 (0.963) |
0.789 (1.00) |
1 (1.00) |
0.506 (0.957) |
0.1 (0.672) |
0.0887 (0.666) |
0.944 (1.00) |
0.155 (0.745) |
0.135 (0.719) |
0.361 (0.912) |
1 (1.00) |
0.327 (0.893) |
0.843 (1.00) |
0.619 (0.968) |
0.354 (0.907) |
1 (1.00) |
0.104 (0.678) |
1 (1.00) |
0.415 (0.932) |
0.568 (0.966) |
0.551 (0.963) |
0.693 (0.99) |
0.846 (1.00) |
0.121 (0.7) |
0.227 (0.828) |
0.48 (0.953) |
0.234 (0.835) |
0.303 (0.885) |
0.562 (0.963) |
0.806 (1.00) |
0.444 (0.951) |
amp 7p11 2 | 52 (18%) | 243 |
0.121 (0.7) |
0.92 (1.00) |
0.0174 (0.425) |
0.17 (0.766) |
0.179 (0.775) |
0.199 (0.79) |
0.404 (0.927) |
0.0375 (0.513) |
0.0787 (0.65) |
0.528 (0.957) |
1 (1.00) |
0.23 (0.828) |
0.0231 (0.438) |
0.125 (0.703) |
0.489 (0.957) |
0.0375 (0.513) |
0.844 (1.00) |
0.345 (0.906) |
0.188 (0.788) |
0.354 (0.907) |
0.934 (1.00) |
0.148 (0.745) |
0.391 (0.922) |
0.596 (0.966) |
0.947 (1.00) |
0.14 (0.728) |
0.877 (1.00) |
0.0364 (0.513) |
0.0787 (0.65) |
0.788 (1.00) |
0.513 (0.957) |
0.193 (0.788) |
1 (1.00) |
0.885 (1.00) |
1 (1.00) |
1 (1.00) |
0.966 (1.00) |
0.0169 (0.425) |
|
amp 8q24 21 | 127 (43%) | 168 |
0.44 (0.949) |
0.591 (0.966) |
0.0676 (0.633) |
0.42 (0.938) |
0.32 (0.888) |
0.62 (0.968) |
0.229 (0.828) |
0.349 (0.907) |
0.47 (0.953) |
0.826 (1.00) |
1 (1.00) |
0.898 (1.00) |
0.218 (0.816) |
0.194 (0.788) |
0.257 (0.857) |
0.349 (0.907) |
0.436 (0.948) |
0.52 (0.957) |
0.543 (0.961) |
0.65 (0.979) |
0.582 (0.966) |
0.893 (1.00) |
0.721 (0.995) |
0.666 (0.985) |
0.48 (0.953) |
0.315 (0.888) |
0.693 (0.99) |
0.389 (0.922) |
0.47 (0.953) |
0.15 (0.745) |
0.865 (1.00) |
0.595 (0.966) |
0.288 (0.872) |
0.895 (1.00) |
0.194 (0.788) |
0.495 (0.957) |
0.961 (1.00) |
0.593 (0.966) |
0.184 (0.785) |
amp 9p24 1 | 63 (21%) | 232 |
0.195 (0.788) |
0.157 (0.745) |
0.188 (0.788) |
0.00505 (0.329) |
0.684 (0.986) |
0.33 (0.895) |
0.757 (1.00) |
0.0828 (0.651) |
0.0111 (0.384) |
0.0398 (0.513) |
0.771 (1.00) |
0.125 (0.703) |
0.313 (0.888) |
0.351 (0.907) |
0.394 (0.922) |
0.0828 (0.651) |
0.86 (1.00) |
0.548 (0.963) |
1 (1.00) |
0.423 (0.94) |
0.674 (0.986) |
0.112 (0.689) |
0.0545 (0.558) |
0.235 (0.835) |
0.99 (1.00) |
0.524 (0.957) |
0.441 (0.949) |
0.228 (0.828) |
0.0111 (0.384) |
0.185 (0.785) |
0.136 (0.719) |
0.011 (0.384) |
0.16 (0.754) |
0.459 (0.953) |
0.734 (0.998) |
0.266 (0.857) |
0.85 (1.00) |
0.14 (0.727) |
0.252 (0.857) |
amp 11p12 | 23 (8%) | 272 |
0.596 (0.966) |
0.027 (0.472) |
0.263 (0.857) |
0.312 (0.888) |
0.563 (0.963) |
0.558 (0.963) |
0.639 (0.974) |
0.261 (0.857) |
0.0389 (0.513) |
0.298 (0.881) |
0.0451 (0.532) |
0.0754 (0.648) |
0.317 (0.888) |
0.26 (0.857) |
0.261 (0.857) |
0.982 (1.00) |
0.679 (0.986) |
0.459 (0.953) |
0.102 (0.677) |
0.515 (0.957) |
0.426 (0.942) |
0.627 (0.97) |
0.322 (0.888) |
0.197 (0.79) |
0.633 (0.971) |
0.32 (0.888) |
0.0389 (0.513) |
0.971 (1.00) |
0.284 (0.869) |
0.5 (0.957) |
0.188 (0.788) |
0.427 (0.943) |
1 (1.00) |
0.346 (0.906) |
0.659 (0.985) |
0.0248 (0.453) |
0.806 (1.00) |
||
amp 11q13 3 | 41 (14%) | 254 |
0.962 (1.00) |
0.344 (0.906) |
0.945 (1.00) |
0.452 (0.953) |
0.614 (0.968) |
0.809 (1.00) |
0.622 (0.968) |
0.0373 (0.513) |
0.219 (0.816) |
0.421 (0.939) |
0.32 (0.888) |
0.107 (0.678) |
0.842 (1.00) |
0.0146 (0.422) |
1 (1.00) |
0.0373 (0.513) |
0.717 (0.995) |
0.207 (0.802) |
1 (1.00) |
0.814 (1.00) |
0.333 (0.896) |
0.755 (1.00) |
0.813 (1.00) |
0.663 (0.985) |
0.63 (0.97) |
1 (1.00) |
0.683 (0.986) |
0.453 (0.953) |
0.219 (0.816) |
0.388 (0.922) |
0.466 (0.953) |
0.181 (0.778) |
0.548 (0.963) |
0.87 (1.00) |
0.69 (0.986) |
0.424 (0.942) |
0.0677 (0.633) |
0.324 (0.889) |
0.39 (0.922) |
amp 13q22 1 | 65 (22%) | 230 |
0.469 (0.953) |
0.447 (0.951) |
0.127 (0.703) |
0.696 (0.99) |
0.115 (0.689) |
0.697 (0.99) |
0.708 (0.992) |
0.354 (0.907) |
0.1 (0.672) |
0.728 (0.996) |
0.0303 (0.49) |
0.634 (0.972) |
0.106 (0.678) |
0.764 (1.00) |
0.913 (1.00) |
0.354 (0.907) |
0.0946 (0.671) |
0.0929 (0.667) |
0.53 (0.957) |
0.857 (1.00) |
0.683 (0.986) |
0.514 (0.957) |
0.609 (0.967) |
0.143 (0.733) |
0.927 (1.00) |
0.373 (0.922) |
0.883 (1.00) |
0.0729 (0.642) |
0.1 (0.672) |
0.48 (0.953) |
0.671 (0.986) |
0.455 (0.953) |
0.316 (0.888) |
0.516 (0.957) |
0.516 (0.957) |
0.45 (0.953) |
0.494 (0.957) |
0.107 (0.678) |
|
amp 13q34 | 69 (23%) | 226 |
0.46 (0.953) |
0.882 (1.00) |
0.973 (1.00) |
1 (1.00) |
1 (1.00) |
0.854 (1.00) |
0.74 (1) |
0.94 (1.00) |
0.48 (0.953) |
0.733 (0.998) |
0.298 (0.881) |
0.974 (1.00) |
0.427 (0.942) |
0.216 (0.816) |
0.211 (0.807) |
0.94 (1.00) |
0.0201 (0.427) |
0.629 (0.97) |
0.0452 (0.532) |
0.831 (1.00) |
0.54 (0.961) |
0.46 (0.953) |
0.644 (0.976) |
0.747 (1.00) |
0.0344 (0.507) |
0.509 (0.957) |
0.565 (0.964) |
0.154 (0.745) |
0.48 (0.953) |
0.687 (0.986) |
0.156 (0.745) |
0.473 (0.953) |
1 (1.00) |
0.455 (0.953) |
0.186 (0.788) |
0.2 (0.792) |
0.936 (1.00) |
0.631 (0.97) |
|
amp 15q26 1 | 76 (26%) | 219 |
0.789 (1.00) |
0.0313 (0.493) |
0.115 (0.689) |
0.463 (0.953) |
0.114 (0.689) |
0.193 (0.788) |
0.132 (0.711) |
0.86 (1.00) |
0.82 (1.00) |
0.223 (0.826) |
0.62 (0.968) |
0.857 (1.00) |
0.536 (0.959) |
0.203 (0.796) |
0.296 (0.88) |
0.86 (1.00) |
0.943 (1.00) |
0.623 (0.968) |
1 (1.00) |
0.0363 (0.513) |
0.801 (1.00) |
0.652 (0.979) |
0.0484 (0.541) |
0.151 (0.745) |
0.372 (0.922) |
0.226 (0.828) |
0.333 (0.896) |
0.701 (0.991) |
0.82 (1.00) |
0.889 (1.00) |
1 (1.00) |
0.721 (0.995) |
0.069 (0.635) |
0.264 (0.857) |
0.552 (0.963) |
1 (1.00) |
0.193 (0.788) |
0.026 (0.464) |
0.504 (0.957) |
amp 16p13 13 | 65 (22%) | 230 |
0.562 (0.963) |
0.427 (0.942) |
0.115 (0.689) |
0.252 (0.857) |
0.69 (0.986) |
0.312 (0.888) |
0.996 (1.00) |
0.313 (0.888) |
0.0847 (0.651) |
0.292 (0.876) |
0.771 (1.00) |
0.394 (0.922) |
0.318 (0.888) |
0.882 (1.00) |
0.166 (0.761) |
0.313 (0.888) |
0.951 (1.00) |
0.531 (0.957) |
1 (1.00) |
0.0148 (0.422) |
0.683 (0.986) |
0.597 (0.966) |
0.0216 (0.427) |
0.701 (0.991) |
0.0215 (0.427) |
0.489 (0.957) |
0.344 (0.906) |
0.561 (0.963) |
0.0847 (0.651) |
0.517 (0.957) |
1 (1.00) |
0.303 (0.885) |
0.193 (0.788) |
0.508 (0.957) |
0.351 (0.907) |
0.257 (0.857) |
0.469 (0.953) |
0.748 (1.00) |
|
amp 17q12 | 55 (19%) | 240 |
0.93 (1.00) |
0.707 (0.992) |
0.243 (0.847) |
0.661 (0.985) |
1 (1.00) |
0.56 (0.963) |
0.112 (0.689) |
0.19 (0.788) |
0.315 (0.888) |
0.853 (1.00) |
0.385 (0.922) |
0.575 (0.966) |
0.606 (0.967) |
0.137 (0.72) |
0.156 (0.745) |
0.19 (0.788) |
0.235 (0.835) |
0.668 (0.985) |
1 (1.00) |
0.0822 (0.651) |
0.261 (0.857) |
0.256 (0.857) |
0.261 (0.857) |
0.269 (0.86) |
0.421 (0.938) |
0.651 (0.979) |
0.984 (1.00) |
0.663 (0.985) |
0.315 (0.888) |
0.736 (0.999) |
0.466 (0.953) |
0.672 (0.986) |
0.91 (1.00) |
0.0814 (0.651) |
1 (1.00) |
1 (1.00) |
0.396 (0.923) |
0.75 (1.00) |
0.847 (1.00) |
amp 17q25 1 | 74 (25%) | 221 |
0.757 (1.00) |
0.819 (1.00) |
0.157 (0.745) |
0.263 (0.857) |
0.258 (0.857) |
0.853 (1.00) |
0.0848 (0.651) |
0.21 (0.807) |
0.0609 (0.606) |
0.583 (0.966) |
0.322 (0.888) |
0.36 (0.912) |
0.533 (0.957) |
0.0857 (0.654) |
0.828 (1.00) |
0.21 (0.807) |
0.361 (0.912) |
0.256 (0.857) |
1 (1.00) |
0.177 (0.773) |
0.166 (0.761) |
0.844 (1.00) |
0.181 (0.778) |
0.35 (0.907) |
0.429 (0.943) |
0.919 (1.00) |
0.804 (1.00) |
0.0796 (0.65) |
0.0609 (0.606) |
0.397 (0.924) |
0.105 (0.678) |
0.903 (1.00) |
0.398 (0.924) |
0.482 (0.953) |
0.774 (1.00) |
1 (1.00) |
0.396 (0.923) |
0.877 (1.00) |
0.225 (0.828) |
amp 19p13 3 | 39 (13%) | 256 |
0.226 (0.828) |
0.338 (0.9) |
0.371 (0.922) |
0.36 (0.912) |
0.596 (0.966) |
1 (1.00) |
0.898 (1.00) |
0.585 (0.966) |
0.0834 (0.651) |
0.845 (1.00) |
1 (1.00) |
0.506 (0.957) |
0.683 (0.986) |
0.862 (1.00) |
0.586 (0.966) |
0.585 (0.966) |
0.532 (0.957) |
0.0407 (0.513) |
1 (1.00) |
0.32 (0.888) |
0.816 (1.00) |
0.278 (0.864) |
0.0286 (0.475) |
0.0818 (0.651) |
0.703 (0.991) |
1 (1.00) |
0.742 (1) |
0.1 (0.672) |
0.0834 (0.651) |
0.52 (0.957) |
0.0205 (0.427) |
0.891 (1.00) |
0.197 (0.79) |
0.0537 (0.555) |
1 (1.00) |
1 (1.00) |
0.659 (0.985) |
0.288 (0.872) |
0.217 (0.816) |
amp 19q13 13 | 93 (32%) | 202 |
0.462 (0.953) |
0.119 (0.698) |
0.0319 (0.493) |
0.0846 (0.651) |
0.277 (0.864) |
0.593 (0.966) |
0.516 (0.957) |
0.756 (1.00) |
0.106 (0.678) |
0.828 (1.00) |
0.346 (0.906) |
0.871 (1.00) |
0.466 (0.953) |
0.773 (1.00) |
0.806 (1.00) |
0.756 (1.00) |
0.988 (1.00) |
0.514 (0.957) |
0.56 (0.963) |
0.124 (0.701) |
0.757 (1.00) |
0.0511 (0.544) |
0.0439 (0.526) |
0.704 (0.991) |
0.135 (0.719) |
0.116 (0.689) |
0.327 (0.892) |
0.281 (0.868) |
0.106 (0.678) |
0.331 (0.895) |
0.144 (0.736) |
0.475 (0.953) |
0.6 (0.966) |
0.606 (0.967) |
0.253 (0.857) |
0.846 (1.00) |
0.753 (1.00) |
0.114 (0.689) |
0.167 (0.761) |
amp 20q11 21 | 135 (46%) | 160 |
0.596 (0.966) |
0.0273 (0.472) |
0.0113 (0.384) |
0.336 (0.899) |
0.341 (0.906) |
0.514 (0.957) |
0.654 (0.979) |
0.918 (1.00) |
0.208 (0.804) |
0.0313 (0.493) |
0.115 (0.689) |
0.153 (0.745) |
0.686 (0.986) |
0.644 (0.976) |
0.678 (0.986) |
0.918 (1.00) |
0.412 (0.928) |
0.674 (0.986) |
0.56 (0.963) |
0.0681 (0.633) |
0.726 (0.996) |
0.967 (1.00) |
0.166 (0.761) |
0.791 (1.00) |
0.526 (0.957) |
0.439 (0.949) |
0.215 (0.816) |
0.739 (1) |
0.208 (0.804) |
0.581 (0.966) |
0.388 (0.922) |
0.294 (0.876) |
0.785 (1.00) |
0.407 (0.927) |
0.609 (0.967) |
0.412 (0.927) |
0.493 (0.957) |
0.0198 (0.427) |
0.549 (0.963) |
amp 21q22 13 | 48 (16%) | 247 |
0.282 (0.868) |
0.163 (0.761) |
0.272 (0.864) |
1 (1.00) |
1 (1.00) |
0.665 (0.985) |
0.519 (0.957) |
0.748 (1.00) |
0.776 (1.00) |
0.955 (1.00) |
1 (1.00) |
0.828 (1.00) |
0.258 (0.857) |
0.242 (0.845) |
0.53 (0.957) |
0.748 (1.00) |
0.481 (0.953) |
0.892 (1.00) |
0.459 (0.953) |
0.998 (1.00) |
0.328 (0.895) |
0.814 (1.00) |
0.982 (1.00) |
0.404 (0.927) |
0.947 (1.00) |
0.0984 (0.672) |
0.383 (0.922) |
1 (1.00) |
0.776 (1.00) |
0.637 (0.973) |
0.0393 (0.513) |
0.945 (1.00) |
0.439 (0.949) |
0.472 (0.953) |
0.686 (0.986) |
1 (1.00) |
0.96 (1.00) |
0.178 (0.773) |
0.234 (0.835) |
amp xq28 | 75 (25%) | 220 |
0.0529 (0.554) |
0.343 (0.906) |
0.12 (0.7) |
0.273 (0.864) |
0.448 (0.951) |
0.0227 (0.436) |
0.0887 (0.666) |
0.523 (0.957) |
0.571 (0.966) |
0.121 (0.7) |
0.789 (1.00) |
0.879 (1.00) |
0.639 (0.974) |
0.429 (0.943) |
0.107 (0.678) |
0.523 (0.957) |
0.684 (0.986) |
0.425 (0.942) |
0.459 (0.953) |
0.299 (0.883) |
0.8 (1.00) |
0.448 (0.951) |
0.351 (0.907) |
0.895 (1.00) |
0.756 (1.00) |
0.72 (0.995) |
0.588 (0.966) |
1 (1.00) |
0.571 (0.966) |
0.824 (1.00) |
0.544 (0.961) |
0.0738 (0.645) |
0.525 (0.957) |
0.276 (0.864) |
0.553 (0.963) |
1 (1.00) |
0.955 (1.00) |
0.308 (0.888) |
0.671 (0.986) |
del 1p36 23 | 40 (14%) | 255 |
0.653 (0.979) |
0.0644 (0.629) |
0.572 (0.966) |
0.797 (1.00) |
0.08 (0.651) |
0.316 (0.888) |
0.00757 (0.384) |
0.0174 (0.425) |
0.894 (1.00) |
0.905 (1.00) |
1 (1.00) |
0.686 (0.986) |
0.319 (0.888) |
0.663 (0.985) |
0.864 (1.00) |
0.0174 (0.425) |
0.794 (1.00) |
0.366 (0.919) |
0.53 (0.957) |
0.796 (1.00) |
0.874 (1.00) |
0.387 (0.922) |
0.474 (0.953) |
0.426 (0.942) |
0.684 (0.986) |
0.574 (0.966) |
0.356 (0.909) |
0.8 (1.00) |
0.894 (1.00) |
0.273 (0.864) |
0.357 (0.91) |
0.28 (0.868) |
0.761 (1.00) |
0.326 (0.891) |
0.463 (0.953) |
0.254 (0.857) |
0.0716 (0.642) |
0.507 (0.957) |
|
del 1p13 2 | 34 (12%) | 261 |
0.0683 (0.633) |
0.97 (1.00) |
0.726 (0.996) |
0.281 (0.868) |
0.115 (0.689) |
1 (1.00) |
0.788 (1.00) |
0.696 (0.99) |
0.577 (0.966) |
0.76 (1.00) |
1 (1.00) |
0.937 (1.00) |
0.0893 (0.667) |
0.546 (0.962) |
0.696 (0.99) |
0.882 (1.00) |
0.247 (0.848) |
1 (1.00) |
0.0782 (0.65) |
0.483 (0.953) |
0.0755 (0.648) |
0.551 (0.963) |
0.0726 (0.642) |
0.898 (1.00) |
0.805 (1.00) |
0.636 (0.972) |
0.527 (0.957) |
0.577 (0.966) |
0.919 (1.00) |
0.0561 (0.57) |
0.0773 (0.649) |
0.548 (0.963) |
0.457 (0.953) |
1 (1.00) |
0.176 (0.773) |
0.995 (1.00) |
0.453 (0.953) |
||
del 2q22 1 | 65 (22%) | 230 |
0.759 (1.00) |
0.566 (0.965) |
0.411 (0.927) |
0.85 (1.00) |
1 (1.00) |
0.44 (0.949) |
0.43 (0.944) |
0.303 (0.885) |
0.611 (0.967) |
0.198 (0.79) |
0.598 (0.966) |
0.704 (0.991) |
1 (1.00) |
0.265 (0.857) |
0.332 (0.896) |
0.303 (0.885) |
0.841 (1.00) |
0.23 (0.828) |
0.551 (0.963) |
0.989 (1.00) |
0.888 (1.00) |
0.673 (0.986) |
0.293 (0.876) |
0.0581 (0.583) |
0.816 (1.00) |
0.542 (0.961) |
0.353 (0.907) |
0.424 (0.942) |
0.611 (0.967) |
0.118 (0.695) |
0.844 (1.00) |
0.378 (0.922) |
0.421 (0.938) |
0.331 (0.895) |
0.021 (0.427) |
1 (1.00) |
0.225 (0.828) |
0.522 (0.957) |
0.498 (0.957) |
del 2q37 1 | 129 (44%) | 166 |
0.938 (1.00) |
0.0104 (0.384) |
0.48 (0.953) |
0.521 (0.957) |
0.182 (0.778) |
0.743 (1) |
0.0507 (0.544) |
0.592 (0.966) |
0.47 (0.953) |
0.544 (0.961) |
0.501 (0.957) |
0.338 (0.9) |
0.586 (0.966) |
0.981 (1.00) |
0.0141 (0.417) |
0.592 (0.966) |
0.192 (0.788) |
0.399 (0.925) |
0.56 (0.963) |
0.911 (1.00) |
0.19 (0.788) |
0.646 (0.977) |
0.882 (1.00) |
0.344 (0.906) |
0.973 (1.00) |
0.242 (0.845) |
0.311 (0.888) |
1 (1.00) |
0.47 (0.953) |
0.00432 (0.308) |
0.612 (0.967) |
0.989 (1.00) |
0.744 (1) |
0.852 (1.00) |
0.3 (0.883) |
0.683 (0.986) |
0.96 (1.00) |
0.0158 (0.422) |
0.708 (0.992) |
del 4q21 3 | 103 (35%) | 192 |
0.132 (0.714) |
0.966 (1.00) |
0.269 (0.86) |
0.0101 (0.384) |
0.0937 (0.667) |
0.0167 (0.425) |
0.0291 (0.477) |
0.63 (0.97) |
0.00863 (0.384) |
0.114 (0.689) |
1 (1.00) |
0.00439 (0.308) |
0.118 (0.695) |
0.0112 (0.384) |
0.287 (0.872) |
0.63 (0.97) |
0.195 (0.788) |
0.798 (1.00) |
1 (1.00) |
0.673 (0.986) |
0.616 (0.968) |
0.446 (0.951) |
0.247 (0.848) |
0.365 (0.919) |
0.641 (0.974) |
0.296 (0.88) |
0.954 (1.00) |
0.479 (0.953) |
0.00863 (0.384) |
0.351 (0.907) |
0.599 (0.966) |
0.247 (0.848) |
0.747 (1.00) |
0.705 (0.991) |
0.149 (0.745) |
0.696 (0.99) |
0.157 (0.745) |
0.981 (1.00) |
0.363 (0.916) |
del 4q35 2 | 114 (39%) | 181 |
0.618 (0.968) |
0.32 (0.888) |
0.292 (0.876) |
0.319 (0.888) |
1 (1.00) |
0.0454 (0.532) |
0.0746 (0.648) |
0.175 (0.773) |
0.304 (0.885) |
0.737 (0.999) |
0.177 (0.773) |
0.205 (0.799) |
0.89 (1.00) |
0.0186 (0.427) |
0.305 (0.885) |
0.175 (0.773) |
0.735 (0.998) |
0.219 (0.816) |
0.56 (0.963) |
0.656 (0.981) |
0.0618 (0.612) |
0.27 (0.861) |
0.703 (0.991) |
0.598 (0.966) |
0.805 (1.00) |
0.442 (0.949) |
0.278 (0.864) |
0.605 (0.967) |
0.304 (0.885) |
0.564 (0.964) |
0.392 (0.922) |
0.395 (0.923) |
0.408 (0.927) |
0.616 (0.968) |
0.786 (1.00) |
0.689 (0.986) |
0.393 (0.922) |
0.326 (0.891) |
0.511 (0.957) |
del 5q12 1 | 76 (26%) | 219 |
0.0535 (0.555) |
0.963 (1.00) |
0.5 (0.957) |
0.263 (0.857) |
1 (1.00) |
1 (1.00) |
0.525 (0.957) |
0.13 (0.709) |
0.0667 (0.633) |
0.834 (1.00) |
0.447 (0.951) |
0.0401 (0.513) |
0.167 (0.761) |
0.513 (0.957) |
0.0487 (0.541) |
0.13 (0.709) |
0.718 (0.995) |
0.402 (0.927) |
1 (1.00) |
0.466 (0.953) |
0.155 (0.745) |
0.189 (0.788) |
0.775 (1.00) |
0.0913 (0.667) |
0.959 (1.00) |
0.775 (1.00) |
0.721 (0.995) |
0.182 (0.778) |
0.0667 (0.633) |
0.848 (1.00) |
0.704 (0.991) |
0.245 (0.847) |
0.927 (1.00) |
0.768 (1.00) |
1 (1.00) |
0.257 (0.857) |
0.0307 (0.492) |
0.93 (1.00) |
0.179 (0.776) |
del 5q35 2 | 71 (24%) | 224 |
0.594 (0.966) |
0.536 (0.959) |
0.137 (0.72) |
0.709 (0.992) |
0.283 (0.868) |
0.841 (1.00) |
0.324 (0.889) |
0.367 (0.919) |
0.0318 (0.493) |
0.884 (1.00) |
1 (1.00) |
0.305 (0.885) |
0.753 (1.00) |
0.168 (0.761) |
0.41 (0.927) |
0.367 (0.919) |
0.994 (1.00) |
0.924 (1.00) |
1 (1.00) |
0.871 (1.00) |
0.166 (0.761) |
0.278 (0.864) |
0.629 (0.97) |
0.0477 (0.541) |
0.53 (0.957) |
0.528 (0.957) |
0.979 (1.00) |
0.131 (0.71) |
0.0318 (0.493) |
0.91 (1.00) |
0.186 (0.788) |
0.745 (1) |
0.82 (1.00) |
0.385 (0.922) |
0.776 (1.00) |
0.316 (0.888) |
0.209 (0.805) |
0.567 (0.966) |
0.401 (0.927) |
del 6p24 2 | 46 (16%) | 249 |
0.789 (1.00) |
0.848 (1.00) |
0.785 (1.00) |
0.277 (0.864) |
0.686 (0.986) |
0.823 (1.00) |
0.125 (0.703) |
0.394 (0.922) |
0.136 (0.719) |
0.508 (0.957) |
0.536 (0.959) |
0.294 (0.876) |
0.353 (0.907) |
0.856 (1.00) |
0.106 (0.678) |
0.394 (0.922) |
0.845 (1.00) |
1 (1.00) |
1 (1.00) |
0.467 (0.953) |
0.454 (0.953) |
0.111 (0.689) |
0.607 (0.967) |
0.331 (0.895) |
0.819 (1.00) |
0.598 (0.966) |
0.407 (0.927) |
0.383 (0.922) |
0.136 (0.719) |
0.194 (0.788) |
0.51 (0.957) |
0.224 (0.828) |
0.382 (0.922) |
0.474 (0.953) |
0.519 (0.957) |
0.714 (0.994) |
0.0376 (0.513) |
0.808 (1.00) |
0.985 (1.00) |
del 7q34 | 60 (20%) | 235 |
0.203 (0.797) |
0.0863 (0.654) |
0.555 (0.963) |
0.219 (0.816) |
1 (1.00) |
0.683 (0.986) |
0.775 (1.00) |
0.112 (0.689) |
0.0217 (0.427) |
0.931 (1.00) |
0.604 (0.967) |
0.735 (0.998) |
0.407 (0.927) |
0.743 (1) |
0.856 (1.00) |
0.112 (0.689) |
0.778 (1.00) |
0.249 (0.85) |
0.583 (0.966) |
0.776 (1.00) |
0.202 (0.796) |
0.776 (1.00) |
0.612 (0.967) |
0.092 (0.667) |
0.287 (0.872) |
0.841 (1.00) |
0.75 (1.00) |
0.216 (0.816) |
0.0217 (0.427) |
0.349 (0.907) |
0.418 (0.936) |
0.72 (0.995) |
0.75 (1.00) |
0.697 (0.99) |
0.755 (1.00) |
0.796 (1.00) |
0.591 (0.966) |
0.077 (0.648) |
0.854 (1.00) |
del 8p23 3 | 104 (35%) | 191 |
0.00681 (0.38) |
0.264 (0.857) |
0.891 (1.00) |
0.502 (0.957) |
0.732 (0.998) |
0.728 (0.996) |
0.937 (1.00) |
0.529 (0.957) |
0.3 (0.883) |
0.793 (1.00) |
1 (1.00) |
0.924 (1.00) |
0.048 (0.541) |
0.437 (0.948) |
0.199 (0.79) |
0.529 (0.957) |
0.0998 (0.672) |
0.0338 (0.506) |
1 (1.00) |
0.84 (1.00) |
0.966 (1.00) |
0.164 (0.761) |
0.979 (1.00) |
0.68 (0.986) |
0.986 (1.00) |
0.544 (0.961) |
0.917 (1.00) |
0.153 (0.745) |
0.3 (0.883) |
0.519 (0.957) |
0.215 (0.816) |
0.319 (0.888) |
0.491 (0.957) |
0.748 (1.00) |
0.596 (0.966) |
1 (1.00) |
0.136 (0.719) |
0.23 (0.828) |
0.575 (0.966) |
del 8p23 1 | 97 (33%) | 198 |
0.012 (0.389) |
0.166 (0.761) |
0.955 (1.00) |
0.498 (0.957) |
0.725 (0.996) |
0.373 (0.922) |
0.782 (1.00) |
0.318 (0.888) |
0.236 (0.835) |
0.323 (0.889) |
0.812 (1.00) |
0.857 (1.00) |
0.0153 (0.422) |
0.237 (0.837) |
0.0219 (0.427) |
0.318 (0.888) |
0.159 (0.749) |
0.123 (0.701) |
0.56 (0.963) |
0.789 (1.00) |
0.757 (1.00) |
0.197 (0.79) |
0.968 (1.00) |
1 (1.00) |
0.698 (0.99) |
0.671 (0.986) |
0.907 (1.00) |
0.101 (0.674) |
0.236 (0.835) |
0.433 (0.948) |
0.367 (0.919) |
0.779 (1.00) |
0.967 (1.00) |
0.776 (1.00) |
0.786 (1.00) |
1 (1.00) |
0.13 (0.709) |
0.145 (0.738) |
0.44 (0.949) |
del 11q23 3 | 162 (55%) | 133 |
0.998 (1.00) |
0.0145 (0.422) |
0.786 (1.00) |
0.749 (1.00) |
0.741 (1) |
1 (1.00) |
0.0116 (0.384) |
0.599 (0.966) |
0.671 (0.986) |
0.198 (0.79) |
0.191 (0.788) |
0.731 (0.998) |
0.278 (0.864) |
0.768 (1.00) |
0.902 (1.00) |
0.599 (0.966) |
0.886 (1.00) |
0.03 (0.487) |
1 (1.00) |
0.151 (0.745) |
0.482 (0.953) |
0.771 (1.00) |
0.393 (0.922) |
0.67 (0.986) |
0.0343 (0.507) |
0.492 (0.957) |
0.0334 (0.504) |
0.134 (0.719) |
0.671 (0.986) |
0.5 (0.957) |
0.864 (1.00) |
0.0382 (0.513) |
0.501 (0.957) |
0.897 (1.00) |
0.437 (0.948) |
0.33 (0.895) |
0.661 (0.985) |
0.0216 (0.427) |
0.0083 (0.384) |
del 11q25 | 160 (54%) | 135 |
0.41 (0.927) |
0.15 (0.745) |
0.625 (0.968) |
0.873 (1.00) |
0.739 (1) |
1 (1.00) |
0.019 (0.427) |
0.71 (0.992) |
0.885 (1.00) |
0.175 (0.773) |
0.0768 (0.648) |
0.677 (0.986) |
0.106 (0.678) |
0.685 (0.986) |
0.618 (0.968) |
0.71 (0.992) |
0.6 (0.966) |
0.0564 (0.57) |
1 (1.00) |
0.262 (0.857) |
0.482 (0.953) |
0.771 (1.00) |
0.696 (0.99) |
0.469 (0.953) |
0.0343 (0.507) |
0.486 (0.957) |
0.12 (0.7) |
0.0671 (0.633) |
0.885 (1.00) |
0.643 (0.976) |
1 (1.00) |
0.0182 (0.427) |
0.838 (1.00) |
0.419 (0.936) |
0.437 (0.948) |
0.334 (0.897) |
0.807 (1.00) |
0.195 (0.788) |
0.0227 (0.436) |
del 13q12 11 | 98 (33%) | 197 |
0.294 (0.878) |
0.954 (1.00) |
0.0796 (0.65) |
0.0796 (0.65) |
0.288 (0.872) |
1 (1.00) |
0.00306 (0.274) |
0.58 (0.966) |
0.0114 (0.384) |
0.09 (0.667) |
0.346 (0.906) |
0.126 (0.703) |
0.394 (0.922) |
0.0846 (0.651) |
0.664 (0.985) |
0.58 (0.966) |
0.229 (0.828) |
0.109 (0.685) |
1 (1.00) |
0.149 (0.745) |
0.967 (1.00) |
0.583 (0.966) |
0.195 (0.788) |
0.665 (0.985) |
0.252 (0.857) |
0.665 (0.985) |
0.79 (1.00) |
0.288 (0.872) |
0.0114 (0.384) |
0.473 (0.953) |
0.723 (0.995) |
0.0232 (0.438) |
0.64 (0.974) |
0.572 (0.966) |
0.253 (0.857) |
0.262 (0.857) |
0.317 (0.888) |
0.91 (1.00) |
0.00983 (0.384) |
del 13q14 2 | 118 (40%) | 177 |
0.213 (0.813) |
0.126 (0.703) |
0.00531 (0.329) |
0.0459 (0.532) |
0.517 (0.957) |
0.325 (0.891) |
0.0181 (0.427) |
0.322 (0.888) |
0.0151 (0.422) |
0.0198 (0.427) |
0.646 (0.977) |
0.95 (1.00) |
0.168 (0.761) |
0.00951 (0.384) |
0.0406 (0.513) |
0.322 (0.888) |
0.0175 (0.425) |
0.0361 (0.513) |
1 (1.00) |
0.033 (0.5) |
0.967 (1.00) |
0.526 (0.957) |
0.00826 (0.384) |
0.473 (0.953) |
0.0366 (0.513) |
0.732 (0.998) |
0.922 (1.00) |
0.385 (0.922) |
0.0151 (0.422) |
0.667 (0.985) |
0.731 (0.998) |
0.0384 (0.513) |
0.825 (1.00) |
0.384 (0.922) |
0.0913 (0.667) |
0.0844 (0.651) |
0.651 (0.979) |
0.0961 (0.672) |
0.0126 (0.397) |
del 14q32 31 | 50 (17%) | 245 |
0.629 (0.97) |
0.102 (0.676) |
0.703 (0.991) |
1 (1.00) |
0.117 (0.694) |
0.82 (1.00) |
0.0979 (0.672) |
0.44 (0.949) |
0.278 (0.864) |
0.629 (0.97) |
0.756 (1.00) |
0.933 (1.00) |
0.45 (0.953) |
0.0118 (0.387) |
0.938 (1.00) |
0.44 (0.949) |
0.162 (0.761) |
0.956 (1.00) |
1 (1.00) |
0.0813 (0.651) |
0.377 (0.922) |
0.446 (0.951) |
0.289 (0.874) |
0.172 (0.772) |
0.517 (0.957) |
1 (1.00) |
0.0732 (0.642) |
0.506 (0.957) |
0.278 (0.864) |
0.474 (0.953) |
0.813 (1.00) |
0.525 (0.957) |
0.387 (0.922) |
0.625 (0.968) |
1 (1.00) |
0.345 (0.906) |
0.114 (0.689) |
0.789 (1.00) |
|
del 15q21 1 | 70 (24%) | 225 |
0.768 (1.00) |
0.0112 (0.384) |
0.216 (0.816) |
0.234 (0.835) |
0.393 (0.922) |
0.181 (0.778) |
0.00583 (0.333) |
0.785 (1.00) |
0.59 (0.966) |
0.0275 (0.472) |
1 (1.00) |
0.924 (1.00) |
0.753 (1.00) |
0.0106 (0.384) |
0.155 (0.745) |
0.785 (1.00) |
0.41 (0.927) |
0.715 (0.995) |
1 (1.00) |
0.849 (1.00) |
0.93 (1.00) |
0.0752 (0.648) |
0.314 (0.888) |
0.863 (1.00) |
0.844 (1.00) |
0.936 (1.00) |
0.0568 (0.572) |
0.818 (1.00) |
0.59 (0.966) |
0.432 (0.948) |
0.513 (0.957) |
0.673 (0.986) |
0.376 (0.922) |
0.643 (0.976) |
0.724 (0.995) |
0.292 (0.876) |
0.733 (0.998) |
0.0135 (0.41) |
0.132 (0.711) |
del 17p12 | 109 (37%) | 186 |
0.329 (0.895) |
0.0195 (0.427) |
0.833 (1.00) |
0.604 (0.967) |
1 (1.00) |
0.743 (1) |
0.573 (0.966) |
0.526 (0.957) |
0.93 (1.00) |
0.168 (0.761) |
0.646 (0.977) |
0.198 (0.79) |
0.0259 (0.464) |
0.0532 (0.554) |
0.715 (0.995) |
0.526 (0.957) |
0.17 (0.767) |
0.434 (0.948) |
1 (1.00) |
0.832 (1.00) |
0.46 (0.953) |
0.69 (0.986) |
0.157 (0.745) |
0.0493 (0.541) |
0.632 (0.971) |
0.815 (1.00) |
0.613 (0.968) |
1 (1.00) |
0.93 (1.00) |
0.405 (0.927) |
0.602 (0.966) |
0.621 (0.968) |
0.267 (0.857) |
0.411 (0.927) |
0.787 (1.00) |
0.69 (0.986) |
0.119 (0.699) |
0.0249 (0.453) |
0.704 (0.991) |
del 17q25 3 | 51 (17%) | 244 |
0.459 (0.953) |
0.703 (0.991) |
0.988 (1.00) |
0.409 (0.927) |
0.649 (0.979) |
0.654 (0.979) |
0.105 (0.678) |
0.245 (0.847) |
0.763 (1.00) |
0.258 (0.857) |
1 (1.00) |
0.492 (0.957) |
0.585 (0.966) |
0.308 (0.888) |
0.343 (0.906) |
0.245 (0.847) |
0.353 (0.907) |
0.373 (0.922) |
1 (1.00) |
0.948 (1.00) |
0.314 (0.888) |
0.434 (0.948) |
0.805 (1.00) |
0.574 (0.966) |
0.149 (0.745) |
0.85 (1.00) |
0.901 (1.00) |
1 (1.00) |
0.763 (1.00) |
0.259 (0.857) |
0.678 (0.986) |
0.738 (1) |
1 (1.00) |
0.156 (0.745) |
0.458 (0.953) |
1 (1.00) |
0.958 (1.00) |
0.523 (0.957) |
0.425 (0.942) |
del 19q13 33 | 38 (13%) | 257 |
0.399 (0.925) |
0.199 (0.79) |
0.95 (1.00) |
0.81 (1.00) |
0.614 (0.968) |
1 (1.00) |
0.112 (0.689) |
0.401 (0.927) |
0.766 (1.00) |
0.457 (0.953) |
0.471 (0.953) |
0.478 (0.953) |
0.689 (0.986) |
0.122 (0.701) |
0.835 (1.00) |
0.401 (0.927) |
0.956 (1.00) |
0.0966 (0.672) |
1 (1.00) |
0.708 (0.992) |
0.333 (0.896) |
0.855 (1.00) |
0.388 (0.922) |
0.141 (0.728) |
0.684 (0.986) |
1 (1.00) |
0.314 (0.888) |
1 (1.00) |
0.766 (1.00) |
0.735 (0.998) |
0.77 (1.00) |
0.484 (0.955) |
0.666 (0.985) |
0.916 (1.00) |
0.458 (0.953) |
0.278 (0.864) |
0.659 (0.985) |
0.218 (0.816) |
0.253 (0.857) |
del 20p12 1 | 36 (12%) | 259 |
0.158 (0.745) |
0.282 (0.868) |
0.564 (0.964) |
0.639 (0.974) |
1 (1.00) |
0.229 (0.828) |
0.788 (1.00) |
0.0935 (0.667) |
0.531 (0.957) |
0.623 (0.968) |
1 (1.00) |
0.283 (0.868) |
0.0457 (0.532) |
0.99 (1.00) |
0.95 (1.00) |
0.0935 (0.667) |
0.0472 (0.541) |
0.932 (1.00) |
0.298 (0.881) |
0.652 (0.979) |
0.877 (1.00) |
0.708 (0.992) |
0.494 (0.957) |
0.745 (1) |
0.52 (0.957) |
0.376 (0.922) |
0.856 (1.00) |
1 (1.00) |
0.531 (0.957) |
0.358 (0.912) |
0.437 (0.948) |
0.607 (0.967) |
0.291 (0.876) |
0.713 (0.994) |
0.724 (0.995) |
0.577 (0.966) |
0.37 (0.922) |
0.694 (0.99) |
|
del 21q11 2 | 58 (20%) | 237 |
0.0178 (0.427) |
0.169 (0.764) |
0.042 (0.516) |
0.219 (0.816) |
0.69 (0.986) |
0.198 (0.79) |
0.631 (0.97) |
0.562 (0.963) |
0.0647 (0.629) |
0.336 (0.899) |
0.0524 (0.553) |
0.0986 (0.672) |
0.237 (0.837) |
0.043 (0.521) |
0.562 (0.963) |
0.0693 (0.635) |
0.0244 (0.453) |
0.459 (0.953) |
0.0286 (0.475) |
0.314 (0.888) |
0.839 (1.00) |
0.0424 (0.516) |
0.154 (0.745) |
0.766 (1.00) |
0.0447 (0.532) |
0.817 (1.00) |
0.835 (1.00) |
0.0647 (0.629) |
0.188 (0.788) |
0.667 (0.985) |
0.156 (0.745) |
0.443 (0.95) |
0.448 (0.951) |
0.351 (0.907) |
0.727 (0.996) |
0.153 (0.745) |
0.0415 (0.516) |
||
del 22q13 32 | 87 (29%) | 208 |
0.166 (0.761) |
0.261 (0.857) |
0.349 (0.907) |
0.301 (0.883) |
0.494 (0.957) |
0.363 (0.916) |
0.278 (0.864) |
0.559 (0.963) |
0.984 (1.00) |
0.899 (1.00) |
0.803 (1.00) |
0.728 (0.996) |
1 (1.00) |
0.63 (0.97) |
0.134 (0.719) |
0.559 (0.963) |
0.499 (0.957) |
0.0726 (0.642) |
0.533 (0.957) |
0.0113 (0.384) |
0.145 (0.738) |
0.572 (0.966) |
0.0279 (0.473) |
0.64 (0.974) |
0.9 (1.00) |
0.925 (1.00) |
0.143 (0.733) |
0.288 (0.872) |
0.984 (1.00) |
0.189 (0.788) |
0.854 (1.00) |
0.945 (1.00) |
0.874 (1.00) |
0.24 (0.845) |
0.177 (0.773) |
0.247 (0.848) |
0.651 (0.979) |
0.297 (0.881) |
0.153 (0.745) |
del xp11 3 | 72 (24%) | 223 |
0.488 (0.957) |
0.205 (0.799) |
0.803 (1.00) |
0.57 (0.966) |
0.686 (0.986) |
0.545 (0.961) |
0.096 (0.672) |
0.522 (0.957) |
1 (1.00) |
0.095 (0.671) |
0.113 (0.689) |
0.666 (0.985) |
0.529 (0.957) |
0.474 (0.953) |
0.178 (0.773) |
0.522 (0.957) |
0.697 (0.99) |
0.359 (0.912) |
0.284 (0.869) |
0.353 (0.907) |
0.759 (1.00) |
0.122 (0.701) |
0.108 (0.683) |
0.581 (0.966) |
0.644 (0.976) |
0.323 (0.889) |
0.386 (0.922) |
0.847 (1.00) |
1 (1.00) |
0.863 (1.00) |
0.105 (0.678) |
0.092 (0.667) |
0.0727 (0.642) |
0.726 (0.996) |
0.0682 (0.633) |
1 (1.00) |
0.225 (0.828) |
0.181 (0.778) |
0.506 (0.957) |
del xq21 33 | 59 (20%) | 236 |
0.0707 (0.642) |
0.471 (0.953) |
0.737 (0.999) |
0.557 (0.963) |
0.37 (0.922) |
1 (1.00) |
0.146 (0.742) |
0.763 (1.00) |
0.47 (0.953) |
0.18 (0.776) |
0.779 (1.00) |
0.106 (0.678) |
0.0921 (0.667) |
0.393 (0.922) |
0.575 (0.966) |
0.763 (1.00) |
0.844 (1.00) |
0.623 (0.968) |
0.188 (0.788) |
0.176 (0.773) |
0.54 (0.961) |
0.504 (0.957) |
0.0263 (0.464) |
0.924 (1.00) |
0.53 (0.957) |
0.0984 (0.672) |
0.209 (0.805) |
1 (1.00) |
0.47 (0.953) |
0.906 (1.00) |
0.038 (0.513) |
0.6 (0.966) |
0.815 (1.00) |
0.793 (1.00) |
0.116 (0.689) |
0.121 (0.7) |
0.462 (0.953) |
0.437 (0.948) |
0.877 (1.00) |
P value = 0.000111 (Wilcoxon-test), Q value = 0.03
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 293 | 48.1 (13.8) |
AMP PEAK 14(11Q22.1) MUTATED | 47 | 40.9 (12.6) |
AMP PEAK 14(11Q22.1) WILD-TYPE | 246 | 49.5 (13.6) |
P value = 0.0023 (Fisher's exact test), Q value = 0.24
nPatients | INDETERMINATE (NEITHER PRE OR POSTMENOPAUSAL) | PERI (6-12 MONTHS SINCE LAST MENSTRUAL PERIOD) | POST (PRIOR BILATERAL OVARIECTOMY OR >12 MO SINCE LMP WITH NO PRIOR HYSTERECTOMY) | PRE (<6 MONTHS SINCE LMP AND NO PRIOR BILATERAL OVARIECTOMY AND NOT ON ESTROGEN REPLACEMENT) |
---|---|---|---|---|
ALL | 3 | 25 | 82 | 121 |
AMP PEAK 14(11Q22.1) MUTATED | 0 | 4 | 4 | 28 |
AMP PEAK 14(11Q22.1) WILD-TYPE | 3 | 21 | 78 | 93 |
P value = 0.00252 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 293 | 2008.5 (4.6) |
AMP PEAK 14(11Q22.1) MUTATED | 47 | 2006.4 (5.6) |
AMP PEAK 14(11Q22.1) WILD-TYPE | 246 | 2008.9 (4.3) |
P value = 9.19e-05 (Wilcoxon-test), Q value = 0.028
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 295 | 48.2 (13.8) |
AMP PEAK 14(11Q22.1) MUTATED | 47 | 40.9 (12.6) |
AMP PEAK 14(11Q22.1) WILD-TYPE | 248 | 49.6 (13.6) |
P value = 0.00151 (Fisher's exact test), Q value = 0.21
nPatients | KERATINIZING SQUAMOUS CELL CARCINOMA | NON-KERATINIZING SQUAMOUS CELL CARCINOMA |
---|---|---|
ALL | 49 | 117 |
AMP PEAK 22(19P13.2) MUTATED | 14 | 10 |
AMP PEAK 22(19P13.2) WILD-TYPE | 35 | 107 |
P value = 0.000706 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 129 | 56 |
DEL PEAK 5(3P22.1) MUTATED | 33 | 29 |
DEL PEAK 5(3P22.1) WILD-TYPE | 96 | 27 |
P value = 0.00018 (Fisher's exact test), Q value = 0.044
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 6 | 242 | 6 | 21 | 3 | 17 |
DEL PEAK 5(3P22.1) MUTATED | 1 | 107 | 1 | 1 | 0 | 3 |
DEL PEAK 5(3P22.1) WILD-TYPE | 5 | 135 | 5 | 20 | 3 | 14 |
P value = 3.18e-05 (Wilcoxon-test), Q value = 0.016
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 150 | 0.9 (2.1) |
DEL PEAK 5(3P22.1) MUTATED | 52 | 1.5 (2.1) |
DEL PEAK 5(3P22.1) WILD-TYPE | 98 | 0.6 (2.0) |
P value = 0.0017 (Fisher's exact test), Q value = 0.21
nPatients | ABSENT | PRESENT |
---|---|---|
ALL | 71 | 74 |
DEL PEAK 5(3P22.1) MUTATED | 15 | 34 |
DEL PEAK 5(3P22.1) WILD-TYPE | 56 | 40 |
P value = 3.18e-05 (Wilcoxon-test), Q value = 0.016
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 150 | 0.9 (2.1) |
DEL PEAK 5(3P22.1) MUTATED | 52 | 1.5 (2.1) |
DEL PEAK 5(3P22.1) WILD-TYPE | 98 | 0.6 (2.0) |
P value = 6e-05 (Fisher's exact test), Q value = 0.025
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 6 | 242 | 6 | 21 | 3 | 17 |
DEL PEAK 6(3P14.2) MUTATED | 2 | 124 | 1 | 1 | 1 | 5 |
DEL PEAK 6(3P14.2) WILD-TYPE | 4 | 118 | 5 | 20 | 2 | 12 |
P value = 0.00175 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 129 | 56 |
DEL PEAK 7(4P16.3) MUTATED | 41 | 32 |
DEL PEAK 7(4P16.3) WILD-TYPE | 88 | 24 |
P value = 9e-05 (Fisher's exact test), Q value = 0.028
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 6 | 242 | 6 | 21 | 3 | 17 |
DEL PEAK 7(4P16.3) MUTATED | 2 | 117 | 3 | 1 | 0 | 4 |
DEL PEAK 7(4P16.3) WILD-TYPE | 4 | 125 | 3 | 20 | 3 | 13 |
P value = 0.00111 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 150 | 0.9 (2.1) |
DEL PEAK 7(4P16.3) MUTATED | 53 | 1.3 (1.8) |
DEL PEAK 7(4P16.3) WILD-TYPE | 97 | 0.7 (2.2) |
P value = 0.00111 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 150 | 0.9 (2.1) |
DEL PEAK 7(4P16.3) MUTATED | 53 | 1.3 (1.8) |
DEL PEAK 7(4P16.3) WILD-TYPE | 97 | 0.7 (2.2) |
P value = 0.00204 (Fisher's exact test), Q value = 0.22
nPatients | NO | YES |
---|---|---|
ALL | 53 | 125 |
DEL PEAK 9(4Q22.1) MUTATED | 10 | 54 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 43 | 71 |
P value = 0.00175 (Fisher's exact test), Q value = 0.21
nPatients | G1 | G2 | G3 | G4 | GX |
---|---|---|---|---|---|
ALL | 18 | 129 | 115 | 1 | 24 |
DEL PEAK 9(4Q22.1) MUTATED | 2 | 34 | 54 | 0 | 8 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 16 | 95 | 61 | 1 | 16 |
P value = 0.000747 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 293 | 2008.5 (4.6) |
DEL PEAK 14(6Q26) MUTATED | 98 | 2007.2 (5.2) |
DEL PEAK 14(6Q26) WILD-TYPE | 195 | 2009.2 (4.2) |
P value = 0.000904 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 293 | 48.1 (13.8) |
DEL PEAK 18(10Q23.31) MUTATED | 86 | 52.2 (14.5) |
DEL PEAK 18(10Q23.31) WILD-TYPE | 207 | 46.4 (13.2) |
P value = 0.00121 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 295 | 48.2 (13.8) |
DEL PEAK 18(10Q23.31) MUTATED | 86 | 52.2 (14.5) |
DEL PEAK 18(10Q23.31) WILD-TYPE | 209 | 46.6 (13.2) |
P value = 0.00193 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 295 | 48.2 (13.8) |
DEL PEAK 19(11P15.1) MUTATED | 102 | 51.8 (13.5) |
DEL PEAK 19(11P15.1) WILD-TYPE | 193 | 46.3 (13.6) |
P value = 1e-05 (Fisher's exact test), Q value = 0.012
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 6 | 242 | 6 | 21 | 3 | 17 |
DEL PEAK 26(16Q11.2) MUTATED | 0 | 32 | 5 | 9 | 1 | 6 |
DEL PEAK 26(16Q11.2) WILD-TYPE | 6 | 210 | 1 | 12 | 2 | 11 |
P value = 3e-05 (Fisher's exact test), Q value = 0.016
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 6 | 242 | 6 | 21 | 3 | 17 |
DEL PEAK 27(16Q23.1) MUTATED | 0 | 34 | 4 | 9 | 2 | 6 |
DEL PEAK 27(16Q23.1) WILD-TYPE | 6 | 208 | 2 | 12 | 1 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.012
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 6 | 242 | 6 | 21 | 3 | 17 |
DEL PEAK 30(18Q21.2) MUTATED | 0 | 55 | 1 | 14 | 2 | 10 |
DEL PEAK 30(18Q21.2) WILD-TYPE | 6 | 187 | 5 | 7 | 1 | 7 |
P value = 0.00169 (Fisher's exact test), Q value = 0.21
nPatients | TUMOR FREE | WITH TUMOR |
---|---|---|
ALL | 193 | 76 |
DEL PEAK 31(19P13.3) MUTATED | 56 | 38 |
DEL PEAK 31(19P13.3) WILD-TYPE | 137 | 38 |
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/22507940/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/22489370/CESC-TP.merged_data.txt
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Number of patients = 295
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Number of significantly focal cnvs = 63
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Number of selected clinical features = 39
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Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.