This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 295 patients, 217 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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3p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q gain cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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5p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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6q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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8q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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9q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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11q gain cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'MRNASEQ_CNMF'.
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12q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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13q gain cnv correlated to 'MIRSEQ_CNMF'.
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14q gain cnv correlated to 'CN_CNMF'.
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15q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'CN_CNMF'.
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16q gain cnv correlated to 'CN_CNMF'.
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17p gain cnv correlated to 'CN_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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18q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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19p gain cnv correlated to 'CN_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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21q gain cnv correlated to 'MRNASEQ_CNMF'.
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22q gain cnv correlated to 'MRNASEQ_CNMF'.
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xp gain cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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xq gain cnv correlated to 'METHLYATION_CNMF'.
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1p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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1q loss cnv correlated to 'MRNASEQ_CNMF'.
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2p loss cnv correlated to 'CN_CNMF'.
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2q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF'.
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6p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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7p loss cnv correlated to 'METHLYATION_CNMF'.
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7q loss cnv correlated to 'METHLYATION_CNMF'.
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8p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF'.
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9q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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12p loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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12q loss cnv correlated to 'METHLYATION_CNMF'.
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13q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF'.
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16p loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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16q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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18p loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19q loss cnv correlated to 'CN_CNMF'.
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20p loss cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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xp loss cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
9q gain | 50 (17%) | 245 |
0.00146 (0.0184) |
0.00551 (0.0434) |
0.278 (0.491) |
0.558 (0.731) |
0.0135 (0.078) |
0.00052 (0.00907) |
0.0112 (0.0699) |
0.0104 (0.0677) |
0.0461 (0.179) |
0.0347 (0.148) |
3p loss | 77 (26%) | 218 |
1e-05 (0.000482) |
0.00577 (0.0442) |
0.375 (0.583) |
0.0568 (0.207) |
0.0123 (0.0744) |
0.00026 (0.00547) |
0.0116 (0.0707) |
0.00294 (0.0277) |
0.0115 (0.0707) |
0.00153 (0.0189) |
8q loss | 25 (8%) | 270 |
0.00156 (0.0189) |
1e-05 (0.000482) |
0.669 (0.799) |
0.075 (0.242) |
8e-05 (0.00205) |
3e-05 (0.00102) |
0.00721 (0.0514) |
5e-05 (0.00132) |
0.00607 (0.0457) |
0.00825 (0.0564) |
16q loss | 43 (15%) | 252 |
0.242 (0.459) |
0.00793 (0.0551) |
0.739 (0.853) |
0.176 (0.385) |
0.00491 (0.0396) |
0.00249 (0.0251) |
0.0108 (0.0686) |
0.00251 (0.0251) |
0.0404 (0.167) |
0.00043 (0.00801) |
18q loss | 73 (25%) | 222 |
0.00104 (0.0155) |
0.00957 (0.0633) |
0.45 (0.641) |
0.204 (0.422) |
4e-05 (0.00113) |
0.00103 (0.0155) |
0.111 (0.301) |
0.00027 (0.00553) |
0.0173 (0.0935) |
2e-05 (0.000745) |
3q gain | 176 (60%) | 119 |
4e-05 (0.00113) |
0.276 (0.49) |
1 (1.00) |
0.32 (0.532) |
0.00113 (0.016) |
4e-05 (0.00113) |
0.349 (0.559) |
0.00022 (0.00475) |
0.00651 (0.0477) |
1e-05 (0.000482) |
8q gain | 91 (31%) | 204 |
0.002 (0.0222) |
1e-05 (0.000482) |
0.383 (0.584) |
0.501 (0.687) |
0.00607 (0.0457) |
0.00127 (0.0171) |
0.17 (0.378) |
0.00862 (0.0579) |
0.442 (0.632) |
0.00213 (0.0233) |
20q gain | 114 (39%) | 181 |
1e-05 (0.000482) |
0.0345 (0.148) |
0.213 (0.431) |
0.00176 (0.0206) |
0.225 (0.443) |
0.0477 (0.183) |
0.241 (0.459) |
0.0285 (0.13) |
0.0126 (0.0754) |
0.321 (0.532) |
4p loss | 130 (44%) | 165 |
1e-05 (0.000482) |
0.0436 (0.175) |
0.939 (0.977) |
1 (1.00) |
0.00633 (0.0471) |
0.00228 (0.0243) |
0.31 (0.526) |
0.0012 (0.0164) |
0.537 (0.716) |
0.00571 (0.0442) |
13q loss | 80 (27%) | 215 |
1e-05 (0.000482) |
0.246 (0.463) |
0.973 (0.989) |
0.179 (0.39) |
0.0137 (0.0781) |
0.0272 (0.126) |
0.0178 (0.0941) |
0.00193 (0.022) |
0.182 (0.393) |
0.0456 (0.178) |
1p gain | 92 (31%) | 203 |
1e-05 (0.000482) |
0.402 (0.598) |
0.751 (0.86) |
0.864 (0.933) |
0.00013 (0.00314) |
0.00216 (0.0233) |
0.162 (0.375) |
4e-05 (0.00113) |
0.126 (0.328) |
0.00157 (0.0189) |
1q gain | 141 (48%) | 154 |
1e-05 (0.000482) |
0.335 (0.541) |
0.348 (0.559) |
0.38 (0.584) |
0.00398 (0.0352) |
0.00575 (0.0442) |
0.273 (0.487) |
0.00271 (0.0258) |
0.0677 (0.226) |
0.00267 (0.0258) |
2q gain | 38 (13%) | 257 |
4e-05 (0.00113) |
0.044 (0.175) |
0.0672 (0.226) |
0.172 (0.381) |
0.0245 (0.117) |
0.00707 (0.0509) |
0.304 (0.519) |
0.00371 (0.0334) |
0.589 (0.748) |
0.628 (0.773) |
5p gain | 115 (39%) | 180 |
1e-05 (0.000482) |
0.234 (0.452) |
0.553 (0.729) |
0.65 (0.786) |
0.0786 (0.248) |
0.0251 (0.119) |
0.00434 (0.037) |
0.00497 (0.0396) |
0.0295 (0.133) |
0.224 (0.443) |
20p gain | 101 (34%) | 194 |
1e-05 (0.000482) |
0.021 (0.103) |
0.819 (0.899) |
0.0127 (0.0754) |
0.156 (0.363) |
0.0971 (0.281) |
0.0436 (0.175) |
0.122 (0.32) |
0.0169 (0.0918) |
0.377 (0.584) |
8p loss | 82 (28%) | 213 |
1e-05 (0.000482) |
0.944 (0.977) |
0.882 (0.944) |
0.222 (0.443) |
0.0164 (0.0897) |
0.308 (0.523) |
0.0203 (0.103) |
0.0439 (0.175) |
0.00685 (0.0497) |
0.395 (0.594) |
11p loss | 100 (34%) | 195 |
1e-05 (0.000482) |
0.335 (0.541) |
0.0255 (0.12) |
0.0264 (0.123) |
0.0342 (0.148) |
0.0866 (0.265) |
0.466 (0.659) |
0.0622 (0.216) |
0.669 (0.799) |
0.0204 (0.103) |
19p loss | 60 (20%) | 235 |
1e-05 (0.000482) |
0.569 (0.739) |
0.706 (0.824) |
0.122 (0.32) |
0.00039 (0.00744) |
0.00142 (0.0182) |
0.101 (0.286) |
0.00056 (0.00957) |
0.0442 (0.175) |
0.0998 (0.284) |
21q loss | 49 (17%) | 246 |
0.00061 (0.01) |
0.244 (0.462) |
0.606 (0.759) |
0.0243 (0.117) |
0.00879 (0.0586) |
0.00442 (0.037) |
0.46 (0.652) |
0.0269 (0.125) |
0.13 (0.33) |
0.234 (0.452) |
2p gain | 65 (22%) | 230 |
3e-05 (0.00102) |
0.395 (0.594) |
0.0181 (0.0941) |
0.119 (0.317) |
0.018 (0.0941) |
0.0507 (0.188) |
0.129 (0.329) |
0.00112 (0.016) |
0.247 (0.463) |
0.117 (0.315) |
6p gain | 52 (18%) | 243 |
0.0005 (0.00891) |
0.0448 (0.177) |
0.763 (0.865) |
0.011 (0.0692) |
0.0104 (0.0677) |
0.139 (0.343) |
0.944 (0.977) |
0.0737 (0.239) |
0.269 (0.484) |
0.165 (0.378) |
7q gain | 38 (13%) | 257 |
0.00199 (0.0222) |
0.07 (0.23) |
1 (1.00) |
0.137 (0.342) |
0.477 (0.667) |
0.211 (0.429) |
0.00076 (0.0122) |
0.156 (0.363) |
0.00101 (0.0155) |
0.0418 (0.17) |
3q loss | 14 (5%) | 281 |
0.0145 (0.0818) |
0.305 (0.519) |
0.775 (0.871) |
0.029 (0.131) |
0.0233 (0.113) |
0.428 (0.622) |
0.059 (0.211) |
0.371 (0.58) |
0.111 (0.301) |
0.00637 (0.0471) |
6q loss | 74 (25%) | 221 |
0.00018 (0.0041) |
0.0234 (0.113) |
0.422 (0.62) |
0.602 (0.756) |
0.23 (0.45) |
0.0302 (0.135) |
0.148 (0.355) |
0.0362 (0.154) |
0.223 (0.443) |
0.169 (0.378) |
7p gain | 37 (13%) | 258 |
0.00311 (0.0287) |
0.0927 (0.273) |
0.0791 (0.248) |
0.21 (0.427) |
0.0599 (0.213) |
0.423 (0.62) |
0.0005 (0.00891) |
0.128 (0.328) |
0.00475 (0.0389) |
0.169 (0.378) |
9p gain | 51 (17%) | 244 |
0.00759 (0.0532) |
0.114 (0.307) |
0.242 (0.459) |
0.223 (0.443) |
0.327 (0.536) |
0.0105 (0.0677) |
0.127 (0.328) |
0.013 (0.0763) |
0.353 (0.562) |
0.0771 (0.245) |
19q gain | 72 (24%) | 223 |
1e-05 (0.000482) |
0.266 (0.482) |
0.623 (0.773) |
0.532 (0.714) |
0.159 (0.368) |
0.0328 (0.145) |
0.469 (0.661) |
0.0256 (0.12) |
0.305 (0.519) |
0.225 (0.443) |
2q loss | 34 (12%) | 261 |
0.021 (0.103) |
0.183 (0.395) |
0.947 (0.977) |
0.172 (0.381) |
0.00234 (0.0246) |
0.0573 (0.208) |
0.124 (0.326) |
0.0323 (0.144) |
0.567 (0.738) |
0.157 (0.364) |
4q loss | 95 (32%) | 200 |
1e-05 (0.000482) |
0.555 (0.729) |
0.679 (0.806) |
0.953 (0.978) |
0.0709 (0.232) |
0.0176 (0.0941) |
1 (1.00) |
0.0483 (0.183) |
0.182 (0.393) |
0.278 (0.491) |
6p loss | 46 (16%) | 249 |
0.0128 (0.0754) |
0.0395 (0.165) |
0.494 (0.68) |
0.317 (0.53) |
0.189 (0.405) |
0.0408 (0.168) |
0.524 (0.707) |
0.168 (0.378) |
0.426 (0.622) |
0.0946 (0.277) |
17p loss | 94 (32%) | 201 |
0.00432 (0.037) |
0.033 (0.145) |
0.048 (0.183) |
0.591 (0.748) |
0.103 (0.289) |
0.0527 (0.194) |
0.118 (0.315) |
0.0768 (0.245) |
0.252 (0.466) |
0.581 (0.746) |
17q loss | 34 (12%) | 261 |
0.0135 (0.078) |
0.0208 (0.103) |
0.00733 (0.0518) |
0.393 (0.593) |
0.0605 (0.214) |
0.283 (0.497) |
0.102 (0.288) |
0.34 (0.547) |
0.739 (0.853) |
0.698 (0.82) |
20p loss | 22 (7%) | 273 |
0.954 (0.978) |
0.922 (0.97) |
0.152 (0.361) |
0.927 (0.972) |
0.018 (0.0941) |
0.0915 (0.272) |
0.0628 (0.216) |
0.168 (0.378) |
0.00463 (0.0383) |
0.00441 (0.037) |
4q gain | 14 (5%) | 281 |
0.0381 (0.161) |
0.415 (0.612) |
0.0463 (0.179) |
0.364 (0.573) |
0.883 (0.944) |
0.465 (0.659) |
0.834 (0.907) |
0.285 (0.5) |
0.792 (0.883) |
0.287 (0.501) |
6q gain | 35 (12%) | 260 |
0.0137 (0.0781) |
0.0401 (0.167) |
0.215 (0.434) |
0.0919 (0.272) |
0.23 (0.45) |
0.247 (0.463) |
0.741 (0.854) |
0.265 (0.482) |
0.315 (0.53) |
0.665 (0.798) |
8p gain | 53 (18%) | 242 |
2e-05 (0.000745) |
0.0864 (0.265) |
0.767 (0.867) |
0.549 (0.726) |
0.0332 (0.145) |
0.167 (0.378) |
0.826 (0.902) |
0.0763 (0.244) |
0.887 (0.945) |
0.134 (0.339) |
11q gain | 8 (3%) | 287 |
0.377 (0.584) |
0.259 (0.474) |
0.108 (0.297) |
0.67 (0.799) |
0.0506 (0.188) |
0.00164 (0.0195) |
0.18 (0.39) |
0.0229 (0.112) |
0.175 (0.385) |
0.0774 (0.245) |
12q gain | 50 (17%) | 245 |
0.0481 (0.183) |
0.8 (0.886) |
0.382 (0.584) |
0.78 (0.877) |
0.0024 (0.0249) |
0.327 (0.536) |
1 (1.00) |
0.27 (0.485) |
0.723 (0.839) |
0.582 (0.746) |
18p gain | 49 (17%) | 246 |
0.00183 (0.0211) |
0.753 (0.86) |
0.579 (0.746) |
0.762 (0.865) |
0.0389 (0.164) |
0.165 (0.378) |
0.782 (0.878) |
0.289 (0.503) |
0.899 (0.955) |
0.193 (0.412) |
18q gain | 32 (11%) | 263 |
0.00011 (0.00273) |
0.792 (0.883) |
0.302 (0.519) |
0.218 (0.438) |
0.00118 (0.0164) |
0.251 (0.466) |
0.315 (0.53) |
0.334 (0.541) |
0.97 (0.989) |
0.0631 (0.216) |
xp gain | 40 (14%) | 255 |
0.58 (0.746) |
0.0333 (0.145) |
0.587 (0.748) |
0.435 (0.626) |
0.138 (0.343) |
0.0279 (0.128) |
0.731 (0.847) |
0.167 (0.378) |
0.65 (0.786) |
0.317 (0.53) |
1p loss | 13 (4%) | 282 |
0.146 (0.355) |
0.934 (0.977) |
0.765 (0.867) |
0.4 (0.597) |
0.00031 (0.0062) |
0.0193 (0.0992) |
0.0988 (0.282) |
0.2 (0.419) |
0.398 (0.595) |
0.139 (0.343) |
9q loss | 48 (16%) | 247 |
0.0147 (0.0827) |
0.0891 (0.269) |
0.225 (0.443) |
0.495 (0.68) |
0.136 (0.342) |
0.0863 (0.265) |
0.377 (0.584) |
0.536 (0.716) |
0.0107 (0.0686) |
0.385 (0.585) |
11q loss | 115 (39%) | 180 |
1e-05 (0.000482) |
0.287 (0.501) |
0.15 (0.359) |
0.29 (0.504) |
0.0501 (0.188) |
0.0889 (0.269) |
0.298 (0.514) |
0.00803 (0.0553) |
0.424 (0.62) |
0.0709 (0.232) |
16p loss | 32 (11%) | 263 |
0.105 (0.294) |
0.642 (0.783) |
0.627 (0.773) |
0.617 (0.769) |
0.0427 (0.173) |
0.364 (0.573) |
0.276 (0.49) |
0.0112 (0.0699) |
0.153 (0.361) |
0.504 (0.689) |
18p loss | 54 (18%) | 241 |
0.478 (0.668) |
0.0636 (0.217) |
0.966 (0.987) |
0.17 (0.378) |
0.0151 (0.0843) |
0.0652 (0.221) |
0.311 (0.526) |
0.0625 (0.216) |
0.234 (0.452) |
0.00014 (0.00328) |
22q loss | 71 (24%) | 224 |
0.00403 (0.0352) |
0.633 (0.776) |
0.302 (0.519) |
0.117 (0.314) |
0.225 (0.443) |
0.0197 (0.101) |
0.954 (0.978) |
0.209 (0.425) |
0.389 (0.588) |
0.435 (0.626) |
xp loss | 65 (22%) | 230 |
0.0886 (0.269) |
0.0659 (0.223) |
0.529 (0.712) |
0.705 (0.824) |
0.269 (0.484) |
0.624 (0.773) |
0.00243 (0.0249) |
0.195 (0.414) |
0.0646 (0.22) |
0.0116 (0.0707) |
3p gain | 78 (26%) | 217 |
0.201 (0.419) |
0.0925 (0.273) |
0.752 (0.86) |
0.00495 (0.0396) |
0.388 (0.588) |
0.887 (0.945) |
0.148 (0.355) |
0.615 (0.767) |
0.678 (0.806) |
0.583 (0.746) |
5q gain | 48 (16%) | 247 |
2e-05 (0.000745) |
1 (1.00) |
0.652 (0.786) |
0.953 (0.978) |
0.176 (0.385) |
0.842 (0.913) |
0.335 (0.541) |
0.773 (0.871) |
0.25 (0.466) |
0.939 (0.977) |
11p gain | 9 (3%) | 286 |
0.886 (0.945) |
0.914 (0.966) |
0.198 (0.417) |
0.897 (0.954) |
0.398 (0.595) |
0.155 (0.362) |
0.697 (0.82) |
0.0205 (0.103) |
0.635 (0.777) |
0.517 (0.701) |
12p gain | 53 (18%) | 242 |
0.114 (0.307) |
0.667 (0.799) |
0.374 (0.583) |
0.72 (0.837) |
0.00107 (0.0157) |
0.671 (0.799) |
0.793 (0.883) |
0.353 (0.562) |
0.773 (0.871) |
0.637 (0.778) |
13q gain | 25 (8%) | 270 |
0.357 (0.567) |
0.128 (0.328) |
0.233 (0.452) |
0.626 (0.773) |
0.107 (0.296) |
0.0575 (0.208) |
0.0157 (0.087) |
0.0899 (0.269) |
0.0683 (0.226) |
0.0529 (0.194) |
14q gain | 47 (16%) | 248 |
0.00359 (0.0327) |
0.562 (0.733) |
0.96 (0.983) |
0.224 (0.443) |
0.215 (0.434) |
1 (1.00) |
0.368 (0.578) |
0.147 (0.355) |
0.0503 (0.188) |
0.121 (0.319) |
15q gain | 52 (18%) | 243 |
0.00254 (0.0251) |
0.453 (0.644) |
0.131 (0.333) |
0.614 (0.767) |
0.871 (0.936) |
0.87 (0.936) |
0.872 (0.936) |
0.762 (0.865) |
0.941 (0.977) |
0.832 (0.906) |
16p gain | 45 (15%) | 250 |
0.00135 (0.0176) |
0.553 (0.729) |
0.383 (0.584) |
0.761 (0.865) |
0.428 (0.622) |
0.337 (0.544) |
0.0683 (0.226) |
0.0854 (0.264) |
0.411 (0.609) |
0.576 (0.746) |
16q gain | 40 (14%) | 255 |
2e-05 (0.000745) |
0.406 (0.604) |
0.367 (0.577) |
0.291 (0.505) |
0.579 (0.746) |
0.437 (0.628) |
0.151 (0.36) |
0.0872 (0.266) |
0.0913 (0.272) |
0.488 (0.676) |
17p gain | 22 (7%) | 273 |
0.00037 (0.00722) |
0.262 (0.478) |
0.942 (0.977) |
0.973 (0.989) |
0.109 (0.297) |
0.334 (0.541) |
0.33 (0.539) |
0.651 (0.786) |
0.0579 (0.208) |
0.971 (0.989) |
17q gain | 43 (15%) | 252 |
0.00061 (0.01) |
0.108 (0.297) |
0.206 (0.422) |
0.0527 (0.194) |
0.189 (0.405) |
0.413 (0.611) |
0.591 (0.748) |
0.825 (0.902) |
0.205 (0.422) |
0.663 (0.797) |
19p gain | 45 (15%) | 250 |
2e-05 (0.000745) |
0.361 (0.57) |
0.516 (0.701) |
0.94 (0.977) |
0.511 (0.697) |
0.56 (0.732) |
1 (1.00) |
0.484 (0.674) |
0.807 (0.889) |
0.706 (0.824) |
21q gain | 37 (13%) | 258 |
0.109 (0.297) |
0.837 (0.909) |
0.543 (0.72) |
0.716 (0.834) |
0.0181 (0.0941) |
0.357 (0.567) |
0.975 (0.989) |
0.76 (0.865) |
0.752 (0.86) |
0.514 (0.699) |
22q gain | 29 (10%) | 266 |
0.555 (0.729) |
0.49 (0.677) |
0.774 (0.871) |
0.581 (0.746) |
0.00021 (0.00465) |
0.252 (0.466) |
0.799 (0.886) |
0.334 (0.541) |
0.805 (0.889) |
0.315 (0.53) |
xq gain | 43 (15%) | 252 |
0.537 (0.716) |
0.0454 (0.178) |
0.0848 (0.263) |
0.432 (0.625) |
0.242 (0.459) |
0.139 (0.343) |
0.179 (0.39) |
0.147 (0.355) |
0.254 (0.468) |
0.393 (0.593) |
1q loss | 9 (3%) | 286 |
0.382 (0.584) |
0.913 (0.966) |
0.441 (0.632) |
0.683 (0.809) |
0.0343 (0.148) |
0.155 (0.362) |
0.0613 (0.216) |
0.438 (0.63) |
0.202 (0.421) |
0.384 (0.584) |
2p loss | 18 (6%) | 277 |
0.016 (0.0879) |
0.785 (0.88) |
0.909 (0.963) |
0.258 (0.474) |
0.325 (0.535) |
0.236 (0.454) |
0.529 (0.712) |
0.271 (0.485) |
0.561 (0.733) |
0.796 (0.885) |
5q loss | 49 (17%) | 246 |
5e-05 (0.00132) |
0.572 (0.742) |
0.805 (0.889) |
0.447 (0.638) |
0.652 (0.786) |
0.947 (0.977) |
0.118 (0.315) |
0.242 (0.459) |
0.325 (0.535) |
0.0675 (0.226) |
7p loss | 26 (9%) | 269 |
0.384 (0.584) |
0.00862 (0.0579) |
0.737 (0.852) |
0.0962 (0.281) |
0.0592 (0.211) |
0.25 (0.466) |
0.126 (0.328) |
0.826 (0.902) |
0.278 (0.491) |
0.275 (0.49) |
7q loss | 36 (12%) | 259 |
0.595 (0.751) |
0.0416 (0.17) |
0.197 (0.416) |
0.0734 (0.239) |
0.453 (0.644) |
0.164 (0.378) |
0.0984 (0.282) |
0.204 (0.422) |
0.141 (0.345) |
0.188 (0.403) |
9p loss | 53 (18%) | 242 |
0.0013 (0.0172) |
0.794 (0.883) |
0.082 (0.257) |
0.482 (0.672) |
0.474 (0.665) |
0.604 (0.758) |
0.926 (0.972) |
0.873 (0.936) |
0.282 (0.497) |
0.859 (0.93) |
10p loss | 66 (22%) | 229 |
0.00271 (0.0258) |
0.428 (0.622) |
0.745 (0.856) |
0.974 (0.989) |
0.419 (0.616) |
0.53 (0.712) |
0.631 (0.774) |
0.601 (0.756) |
0.321 (0.532) |
0.133 (0.337) |
10q loss | 73 (25%) | 222 |
0.00401 (0.0352) |
0.423 (0.62) |
0.92 (0.968) |
0.9 (0.955) |
0.198 (0.417) |
0.208 (0.425) |
0.51 (0.696) |
0.251 (0.466) |
0.235 (0.453) |
0.127 (0.328) |
12p loss | 40 (14%) | 255 |
0.883 (0.944) |
0.0844 (0.263) |
0.493 (0.679) |
0.00086 (0.0136) |
0.137 (0.342) |
0.489 (0.676) |
0.316 (0.53) |
0.801 (0.887) |
0.172 (0.381) |
0.397 (0.595) |
12q loss | 15 (5%) | 280 |
0.724 (0.84) |
0.0184 (0.0949) |
0.743 (0.855) |
0.806 (0.889) |
0.649 (0.786) |
0.414 (0.611) |
0.204 (0.422) |
0.538 (0.716) |
0.262 (0.478) |
0.654 (0.788) |
15q loss | 47 (16%) | 248 |
0.05 (0.188) |
0.979 (0.993) |
0.916 (0.966) |
0.683 (0.809) |
0.165 (0.378) |
0.591 (0.748) |
0.167 (0.378) |
0.51 (0.696) |
0.155 (0.362) |
0.384 (0.584) |
19q loss | 30 (10%) | 265 |
0.00312 (0.0287) |
0.106 (0.296) |
0.379 (0.584) |
0.63 (0.774) |
0.229 (0.448) |
0.292 (0.505) |
0.476 (0.667) |
0.107 (0.297) |
0.179 (0.39) |
0.239 (0.459) |
4p gain | 11 (4%) | 284 |
0.59 (0.748) |
0.141 (0.346) |
0.3 (0.516) |
0.206 (0.422) |
0.647 (0.786) |
0.596 (0.751) |
0.467 (0.659) |
0.596 (0.751) |
0.637 (0.778) |
0.942 (0.977) |
10p gain | 25 (8%) | 270 |
0.128 (0.328) |
0.518 (0.701) |
0.943 (0.977) |
0.695 (0.82) |
0.821 (0.9) |
0.473 (0.665) |
0.0616 (0.216) |
0.697 (0.82) |
0.327 (0.536) |
0.787 (0.88) |
10q gain | 17 (6%) | 278 |
0.432 (0.625) |
0.859 (0.93) |
0.625 (0.773) |
0.698 (0.82) |
0.36 (0.57) |
0.2 (0.419) |
0.242 (0.459) |
0.916 (0.966) |
0.699 (0.82) |
0.626 (0.773) |
5p loss | 17 (6%) | 278 |
0.577 (0.746) |
0.628 (0.773) |
0.353 (0.562) |
0.556 (0.729) |
0.828 (0.903) |
0.488 (0.676) |
0.815 (0.896) |
0.541 (0.719) |
0.701 (0.822) |
0.142 (0.346) |
14q loss | 35 (12%) | 260 |
0.373 (0.582) |
0.0973 (0.281) |
0.303 (0.519) |
0.09 (0.269) |
0.0626 (0.216) |
0.139 (0.343) |
0.947 (0.977) |
0.0978 (0.281) |
0.194 (0.412) |
0.151 (0.36) |
20q loss | 12 (4%) | 283 |
0.148 (0.355) |
0.867 (0.935) |
0.537 (0.716) |
0.591 (0.748) |
0.268 (0.484) |
0.0969 (0.281) |
1 (1.00) |
0.487 (0.676) |
1 (1.00) |
0.322 (0.534) |
xq loss | 58 (20%) | 237 |
0.266 (0.482) |
0.104 (0.292) |
0.547 (0.724) |
0.679 (0.806) |
0.252 (0.466) |
1 (1.00) |
0.0758 (0.244) |
0.954 (0.978) |
0.259 (0.474) |
0.323 (0.534) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
1P GAIN MUTATED | 3 | 38 | 35 | 6 | 10 |
1P GAIN WILD-TYPE | 12 | 74 | 21 | 53 | 43 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
1P GAIN MUTATED | 19 | 46 | 14 | 12 |
1P GAIN WILD-TYPE | 38 | 52 | 55 | 56 |
P value = 0.00216 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
1P GAIN MUTATED | 13 | 71 | 7 |
1P GAIN WILD-TYPE | 59 | 114 | 28 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
1P GAIN MUTATED | 9 | 31 | 36 | 10 | 6 |
1P GAIN WILD-TYPE | 51 | 64 | 36 | 15 | 37 |
P value = 0.00157 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
1P GAIN MUTATED | 9 | 36 | 30 | 7 | 4 |
1P GAIN WILD-TYPE | 20 | 43 | 69 | 35 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
1Q GAIN MUTATED | 5 | 57 | 42 | 13 | 24 |
1Q GAIN WILD-TYPE | 10 | 55 | 14 | 46 | 29 |
P value = 0.00398 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
1Q GAIN MUTATED | 28 | 60 | 27 | 24 |
1Q GAIN WILD-TYPE | 29 | 38 | 42 | 44 |
P value = 0.00575 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
1Q GAIN MUTATED | 24 | 101 | 14 |
1Q GAIN WILD-TYPE | 48 | 84 | 21 |
P value = 0.00271 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
1Q GAIN MUTATED | 19 | 52 | 42 | 14 | 14 |
1Q GAIN WILD-TYPE | 41 | 43 | 30 | 11 | 29 |
P value = 0.00267 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
1Q GAIN MUTATED | 14 | 46 | 52 | 12 | 9 |
1Q GAIN WILD-TYPE | 15 | 33 | 47 | 30 | 24 |
P value = 3e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
2P GAIN MUTATED | 1 | 41 | 9 | 4 | 10 |
2P GAIN WILD-TYPE | 14 | 71 | 47 | 55 | 43 |
P value = 0.0181 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 41 | 64 |
2P GAIN MUTATED | 17 | 3 | 17 |
2P GAIN WILD-TYPE | 42 | 38 | 47 |
P value = 0.018 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
2P GAIN MUTATED | 16 | 12 | 21 | 16 |
2P GAIN WILD-TYPE | 41 | 86 | 48 | 52 |
P value = 0.00112 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
2P GAIN MUTATED | 18 | 19 | 6 | 11 | 11 |
2P GAIN WILD-TYPE | 42 | 76 | 66 | 14 | 32 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
2Q GAIN MUTATED | 1 | 27 | 4 | 0 | 6 |
2Q GAIN WILD-TYPE | 14 | 85 | 52 | 59 | 47 |
P value = 0.044 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
2Q GAIN MUTATED | 12 | 8 | 18 |
2Q GAIN WILD-TYPE | 60 | 107 | 90 |
P value = 0.0245 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
2Q GAIN MUTATED | 10 | 5 | 11 | 12 |
2Q GAIN WILD-TYPE | 47 | 93 | 58 | 56 |
P value = 0.00707 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
2Q GAIN MUTATED | 13 | 16 | 9 |
2Q GAIN WILD-TYPE | 59 | 169 | 26 |
P value = 0.00371 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
2Q GAIN MUTATED | 12 | 10 | 2 | 5 | 9 |
2Q GAIN WILD-TYPE | 48 | 85 | 70 | 20 | 34 |
P value = 0.00495 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
3P GAIN MUTATED | 10 | 11 | 7 | 5 | 11 |
3P GAIN WILD-TYPE | 22 | 36 | 38 | 18 | 6 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
3Q GAIN MUTATED | 6 | 71 | 45 | 22 | 32 |
3Q GAIN WILD-TYPE | 9 | 41 | 11 | 37 | 21 |
P value = 0.00113 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
3Q GAIN MUTATED | 36 | 72 | 34 | 32 |
3Q GAIN WILD-TYPE | 21 | 26 | 35 | 36 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
3Q GAIN MUTATED | 30 | 129 | 15 |
3Q GAIN WILD-TYPE | 42 | 56 | 20 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
3Q GAIN MUTATED | 23 | 60 | 55 | 16 | 22 |
3Q GAIN WILD-TYPE | 37 | 35 | 17 | 9 | 21 |
P value = 0.00651 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
3Q GAIN MUTATED | 48 | 55 | 65 |
3Q GAIN WILD-TYPE | 53 | 24 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
3Q GAIN MUTATED | 12 | 58 | 69 | 15 | 14 |
3Q GAIN WILD-TYPE | 17 | 21 | 30 | 27 | 19 |
P value = 0.0381 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
4Q GAIN MUTATED | 0 | 2 | 3 | 2 | 7 |
4Q GAIN WILD-TYPE | 15 | 110 | 53 | 57 | 46 |
P value = 0.0463 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 41 | 64 |
4Q GAIN MUTATED | 2 | 0 | 7 |
4Q GAIN WILD-TYPE | 57 | 41 | 57 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
5P GAIN MUTATED | 6 | 65 | 26 | 10 | 8 |
5P GAIN WILD-TYPE | 9 | 47 | 30 | 49 | 45 |
P value = 0.0251 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
5P GAIN MUTATED | 20 | 75 | 19 |
5P GAIN WILD-TYPE | 52 | 110 | 16 |
P value = 0.00434 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
5P GAIN MUTATED | 36 | 21 | 58 |
5P GAIN WILD-TYPE | 69 | 54 | 57 |
P value = 0.00497 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
5P GAIN MUTATED | 14 | 45 | 22 | 13 | 21 |
5P GAIN WILD-TYPE | 46 | 50 | 50 | 12 | 22 |
P value = 0.0295 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
5P GAIN MUTATED | 38 | 22 | 48 |
5P GAIN WILD-TYPE | 63 | 57 | 54 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
5Q GAIN MUTATED | 2 | 28 | 14 | 2 | 2 |
5Q GAIN WILD-TYPE | 13 | 84 | 42 | 57 | 51 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
6P GAIN MUTATED | 0 | 33 | 4 | 9 | 6 |
6P GAIN WILD-TYPE | 15 | 79 | 52 | 50 | 47 |
P value = 0.0448 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
6P GAIN MUTATED | 18 | 13 | 21 |
6P GAIN WILD-TYPE | 54 | 102 | 87 |
P value = 0.011 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
6P GAIN MUTATED | 7 | 4 | 5 | 7 | 7 |
6P GAIN WILD-TYPE | 25 | 43 | 40 | 16 | 10 |
P value = 0.0104 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
6P GAIN MUTATED | 15 | 8 | 14 | 15 |
6P GAIN WILD-TYPE | 42 | 90 | 55 | 53 |
P value = 0.0137 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
6Q GAIN MUTATED | 0 | 23 | 4 | 5 | 3 |
6Q GAIN WILD-TYPE | 15 | 89 | 52 | 54 | 50 |
P value = 0.0401 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
6Q GAIN MUTATED | 14 | 8 | 13 |
6Q GAIN WILD-TYPE | 58 | 107 | 95 |
P value = 0.00311 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
7P GAIN MUTATED | 3 | 17 | 9 | 0 | 8 |
7P GAIN WILD-TYPE | 12 | 95 | 47 | 59 | 45 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
7P GAIN MUTATED | 9 | 3 | 25 |
7P GAIN WILD-TYPE | 96 | 72 | 90 |
P value = 0.00475 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
7P GAIN MUTATED | 9 | 4 | 21 |
7P GAIN WILD-TYPE | 92 | 75 | 81 |
P value = 0.00199 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
7Q GAIN MUTATED | 1 | 19 | 10 | 0 | 8 |
7Q GAIN WILD-TYPE | 14 | 93 | 46 | 59 | 45 |
P value = 0.00076 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
7Q GAIN MUTATED | 10 | 3 | 25 |
7Q GAIN WILD-TYPE | 95 | 72 | 90 |
P value = 0.00101 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
7Q GAIN MUTATED | 11 | 3 | 22 |
7Q GAIN WILD-TYPE | 90 | 76 | 80 |
P value = 0.0418 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
7Q GAIN MUTATED | 2 | 5 | 21 | 5 | 3 |
7Q GAIN WILD-TYPE | 27 | 74 | 78 | 37 | 30 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
8P GAIN MUTATED | 6 | 12 | 22 | 5 | 8 |
8P GAIN WILD-TYPE | 9 | 100 | 34 | 54 | 45 |
P value = 0.0332 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
8P GAIN MUTATED | 12 | 23 | 5 | 13 |
8P GAIN WILD-TYPE | 45 | 75 | 64 | 55 |
P value = 0.002 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
8Q GAIN MUTATED | 7 | 33 | 27 | 9 | 15 |
8Q GAIN WILD-TYPE | 8 | 79 | 29 | 50 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
8Q GAIN MUTATED | 7 | 49 | 35 |
8Q GAIN WILD-TYPE | 65 | 66 | 73 |
P value = 0.00607 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
8Q GAIN MUTATED | 21 | 34 | 10 | 25 |
8Q GAIN WILD-TYPE | 36 | 64 | 59 | 43 |
P value = 0.00127 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
8Q GAIN MUTATED | 11 | 70 | 9 |
8Q GAIN WILD-TYPE | 61 | 115 | 26 |
P value = 0.00862 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8Q GAIN MUTATED | 9 | 39 | 21 | 6 | 16 |
8Q GAIN WILD-TYPE | 51 | 56 | 51 | 19 | 27 |
P value = 0.00213 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
8Q GAIN MUTATED | 7 | 22 | 39 | 16 | 2 |
8Q GAIN WILD-TYPE | 22 | 57 | 60 | 26 | 31 |
P value = 0.00759 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
9P GAIN MUTATED | 1 | 19 | 19 | 6 | 6 |
9P GAIN WILD-TYPE | 14 | 93 | 37 | 53 | 47 |
P value = 0.0105 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
9P GAIN MUTATED | 6 | 34 | 11 |
9P GAIN WILD-TYPE | 66 | 151 | 24 |
P value = 0.013 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
9P GAIN MUTATED | 6 | 15 | 15 | 1 | 14 |
9P GAIN WILD-TYPE | 54 | 80 | 57 | 24 | 29 |
P value = 0.00146 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
9Q GAIN MUTATED | 3 | 21 | 18 | 4 | 4 |
9Q GAIN WILD-TYPE | 12 | 91 | 38 | 55 | 49 |
P value = 0.00551 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
9Q GAIN MUTATED | 4 | 22 | 24 |
9Q GAIN WILD-TYPE | 68 | 93 | 84 |
P value = 0.0135 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
9Q GAIN MUTATED | 11 | 18 | 4 | 17 |
9Q GAIN WILD-TYPE | 46 | 80 | 65 | 51 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
9Q GAIN MUTATED | 3 | 37 | 10 |
9Q GAIN WILD-TYPE | 69 | 148 | 25 |
P value = 0.0112 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
9Q GAIN MUTATED | 9 | 15 | 26 |
9Q GAIN WILD-TYPE | 96 | 60 | 89 |
P value = 0.0104 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
9Q GAIN MUTATED | 3 | 17 | 14 | 3 | 13 |
9Q GAIN WILD-TYPE | 57 | 78 | 58 | 22 | 30 |
P value = 0.0461 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
9Q GAIN MUTATED | 10 | 14 | 23 |
9Q GAIN WILD-TYPE | 91 | 65 | 79 |
P value = 0.0347 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
9Q GAIN MUTATED | 1 | 13 | 20 | 11 | 2 |
9Q GAIN WILD-TYPE | 28 | 66 | 79 | 31 | 31 |
P value = 0.0205 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
11P GAIN MUTATED | 1 | 2 | 0 | 2 | 4 |
11P GAIN WILD-TYPE | 59 | 93 | 72 | 23 | 39 |
P value = 0.00164 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
11Q GAIN MUTATED | 3 | 1 | 4 |
11Q GAIN WILD-TYPE | 69 | 184 | 31 |
P value = 0.0229 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
11Q GAIN MUTATED | 2 | 1 | 0 | 1 | 4 |
11Q GAIN WILD-TYPE | 58 | 94 | 72 | 24 | 39 |
P value = 0.00107 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
12P GAIN MUTATED | 21 | 11 | 9 | 11 |
12P GAIN WILD-TYPE | 36 | 87 | 60 | 57 |
P value = 0.0481 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
12Q GAIN MUTATED | 2 | 26 | 12 | 6 | 4 |
12Q GAIN WILD-TYPE | 13 | 86 | 44 | 53 | 49 |
P value = 0.0024 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
12Q GAIN MUTATED | 20 | 11 | 9 | 10 |
12Q GAIN WILD-TYPE | 37 | 87 | 60 | 58 |
P value = 0.0157 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
13Q GAIN MUTATED | 15 | 6 | 4 |
13Q GAIN WILD-TYPE | 90 | 69 | 111 |
P value = 0.00359 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
14Q GAIN MUTATED | 0 | 28 | 9 | 3 | 7 |
14Q GAIN WILD-TYPE | 15 | 84 | 47 | 56 | 46 |
P value = 0.00254 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
15Q GAIN MUTATED | 4 | 27 | 12 | 2 | 7 |
15Q GAIN WILD-TYPE | 11 | 85 | 44 | 57 | 46 |
P value = 0.00135 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
16P GAIN MUTATED | 0 | 24 | 14 | 3 | 4 |
16P GAIN WILD-TYPE | 15 | 88 | 42 | 56 | 49 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
16Q GAIN MUTATED | 0 | 23 | 14 | 1 | 2 |
16Q GAIN WILD-TYPE | 15 | 89 | 42 | 58 | 51 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
17P GAIN MUTATED | 0 | 18 | 3 | 1 | 0 |
17P GAIN WILD-TYPE | 15 | 94 | 53 | 58 | 53 |
P value = 0.00061 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
17Q GAIN MUTATED | 1 | 29 | 6 | 2 | 5 |
17Q GAIN WILD-TYPE | 14 | 83 | 50 | 57 | 48 |
P value = 0.00183 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
18P GAIN MUTATED | 2 | 21 | 18 | 4 | 4 |
18P GAIN WILD-TYPE | 13 | 91 | 38 | 55 | 49 |
P value = 0.0389 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
18P GAIN MUTATED | 16 | 18 | 7 | 8 |
18P GAIN WILD-TYPE | 41 | 80 | 62 | 60 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
18Q GAIN MUTATED | 1 | 9 | 17 | 2 | 3 |
18Q GAIN WILD-TYPE | 14 | 103 | 39 | 57 | 50 |
P value = 0.00118 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
18Q GAIN MUTATED | 13 | 12 | 1 | 6 |
18Q GAIN WILD-TYPE | 44 | 86 | 68 | 62 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
19P GAIN MUTATED | 0 | 26 | 16 | 2 | 1 |
19P GAIN WILD-TYPE | 15 | 86 | 40 | 57 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
19Q GAIN MUTATED | 3 | 47 | 19 | 2 | 1 |
19Q GAIN WILD-TYPE | 12 | 65 | 37 | 57 | 52 |
P value = 0.0328 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
19Q GAIN MUTATED | 12 | 44 | 14 |
19Q GAIN WILD-TYPE | 60 | 141 | 21 |
P value = 0.0256 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
19Q GAIN MUTATED | 7 | 24 | 18 | 11 | 12 |
19Q GAIN WILD-TYPE | 53 | 71 | 54 | 14 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
20P GAIN MUTATED | 1 | 53 | 26 | 9 | 12 |
20P GAIN WILD-TYPE | 14 | 59 | 30 | 50 | 41 |
P value = 0.021 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
20P GAIN MUTATED | 32 | 42 | 27 |
20P GAIN WILD-TYPE | 40 | 73 | 81 |
P value = 0.0127 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
20P GAIN MUTATED | 10 | 14 | 16 | 7 | 13 |
20P GAIN WILD-TYPE | 22 | 33 | 29 | 16 | 4 |
P value = 0.0436 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
20P GAIN MUTATED | 44 | 27 | 30 |
20P GAIN WILD-TYPE | 61 | 48 | 85 |
P value = 0.0169 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
20P GAIN MUTATED | 45 | 27 | 26 |
20P GAIN WILD-TYPE | 56 | 52 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
20Q GAIN MUTATED | 1 | 55 | 29 | 9 | 20 |
20Q GAIN WILD-TYPE | 14 | 57 | 27 | 50 | 33 |
P value = 0.0345 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
20Q GAIN MUTATED | 37 | 42 | 35 |
20Q GAIN WILD-TYPE | 35 | 73 | 73 |
P value = 0.00176 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
20Q GAIN MUTATED | 10 | 13 | 20 | 8 | 14 |
20Q GAIN WILD-TYPE | 22 | 34 | 25 | 15 | 3 |
P value = 0.0477 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
20Q GAIN MUTATED | 37 | 66 | 11 |
20Q GAIN WILD-TYPE | 35 | 119 | 24 |
P value = 0.0285 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
20Q GAIN MUTATED | 30 | 32 | 23 | 15 | 14 |
20Q GAIN WILD-TYPE | 30 | 63 | 49 | 10 | 29 |
P value = 0.0126 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
20Q GAIN MUTATED | 51 | 27 | 32 |
20Q GAIN WILD-TYPE | 50 | 52 | 70 |
P value = 0.0181 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
21Q GAIN MUTATED | 9 | 19 | 6 | 3 |
21Q GAIN WILD-TYPE | 48 | 79 | 63 | 65 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
22Q GAIN MUTATED | 15 | 5 | 3 | 6 |
22Q GAIN WILD-TYPE | 42 | 93 | 66 | 62 |
P value = 0.0333 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
XP GAIN MUTATED | 8 | 23 | 9 |
XP GAIN WILD-TYPE | 64 | 92 | 99 |
P value = 0.0279 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
XP GAIN MUTATED | 5 | 33 | 2 |
XP GAIN WILD-TYPE | 67 | 152 | 33 |
P value = 0.0454 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
XQ GAIN MUTATED | 9 | 24 | 10 |
XQ GAIN WILD-TYPE | 63 | 91 | 98 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
1P LOSS MUTATED | 2 | 0 | 2 | 9 |
1P LOSS WILD-TYPE | 55 | 98 | 67 | 59 |
P value = 0.0193 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
1P LOSS MUTATED | 3 | 5 | 5 |
1P LOSS WILD-TYPE | 69 | 180 | 30 |
P value = 0.0343 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
1Q LOSS MUTATED | 1 | 1 | 1 | 6 |
1Q LOSS WILD-TYPE | 56 | 97 | 68 | 62 |
P value = 0.016 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
2P LOSS MUTATED | 1 | 6 | 9 | 1 | 1 |
2P LOSS WILD-TYPE | 14 | 106 | 47 | 58 | 52 |
P value = 0.021 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
2Q LOSS MUTATED | 2 | 10 | 14 | 4 | 4 |
2Q LOSS WILD-TYPE | 13 | 102 | 42 | 55 | 49 |
P value = 0.00234 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
2Q LOSS MUTATED | 3 | 21 | 3 | 7 |
2Q LOSS WILD-TYPE | 54 | 77 | 66 | 61 |
P value = 0.0323 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
2Q LOSS MUTATED | 3 | 16 | 10 | 4 | 1 |
2Q LOSS WILD-TYPE | 57 | 79 | 62 | 21 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
3P LOSS MUTATED | 9 | 29 | 15 | 0 | 24 |
3P LOSS WILD-TYPE | 6 | 83 | 41 | 59 | 29 |
P value = 0.00577 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
3P LOSS MUTATED | 10 | 40 | 27 |
3P LOSS WILD-TYPE | 62 | 75 | 81 |
P value = 0.0123 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
3P LOSS MUTATED | 18 | 29 | 8 | 21 |
3P LOSS WILD-TYPE | 39 | 69 | 61 | 47 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
3P LOSS MUTATED | 7 | 62 | 7 |
3P LOSS WILD-TYPE | 65 | 123 | 28 |
P value = 0.0116 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
3P LOSS MUTATED | 18 | 19 | 40 |
3P LOSS WILD-TYPE | 87 | 56 | 75 |
P value = 0.00294 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
3P LOSS MUTATED | 5 | 33 | 22 | 7 | 10 |
3P LOSS WILD-TYPE | 55 | 62 | 50 | 18 | 33 |
P value = 0.0115 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
3P LOSS MUTATED | 17 | 20 | 36 |
3P LOSS WILD-TYPE | 84 | 59 | 66 |
P value = 0.00153 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
3P LOSS MUTATED | 3 | 20 | 31 | 17 | 2 |
3P LOSS WILD-TYPE | 26 | 59 | 68 | 25 | 31 |
P value = 0.0145 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
3Q LOSS MUTATED | 2 | 5 | 1 | 0 | 6 |
3Q LOSS WILD-TYPE | 13 | 107 | 55 | 59 | 47 |
P value = 0.029 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
3Q LOSS MUTATED | 1 | 1 | 3 | 5 | 0 |
3Q LOSS WILD-TYPE | 31 | 46 | 42 | 18 | 17 |
P value = 0.0233 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
3Q LOSS MUTATED | 4 | 1 | 2 | 7 |
3Q LOSS WILD-TYPE | 53 | 97 | 67 | 61 |
P value = 0.00637 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
3Q LOSS MUTATED | 0 | 1 | 4 | 7 | 1 |
3Q LOSS WILD-TYPE | 29 | 78 | 95 | 35 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
4P LOSS MUTATED | 5 | 76 | 28 | 7 | 14 |
4P LOSS WILD-TYPE | 10 | 36 | 28 | 52 | 39 |
P value = 0.0436 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
4P LOSS MUTATED | 23 | 58 | 49 |
4P LOSS WILD-TYPE | 49 | 57 | 59 |
P value = 0.00633 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
4P LOSS MUTATED | 29 | 50 | 18 | 31 |
4P LOSS WILD-TYPE | 28 | 48 | 51 | 37 |
P value = 0.00228 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
4P LOSS MUTATED | 20 | 87 | 21 |
4P LOSS WILD-TYPE | 52 | 98 | 14 |
P value = 0.0012 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
4P LOSS MUTATED | 13 | 51 | 31 | 12 | 23 |
4P LOSS WILD-TYPE | 47 | 44 | 41 | 13 | 20 |
P value = 0.00571 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
4P LOSS MUTATED | 9 | 37 | 52 | 19 | 6 |
4P LOSS WILD-TYPE | 20 | 42 | 47 | 23 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
4Q LOSS MUTATED | 3 | 65 | 23 | 3 | 1 |
4Q LOSS WILD-TYPE | 12 | 47 | 33 | 56 | 52 |
P value = 0.0176 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
4Q LOSS MUTATED | 21 | 55 | 19 |
4Q LOSS WILD-TYPE | 51 | 130 | 16 |
P value = 0.0483 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
4Q LOSS MUTATED | 15 | 32 | 20 | 6 | 22 |
4Q LOSS WILD-TYPE | 45 | 63 | 52 | 19 | 21 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
5Q LOSS MUTATED | 1 | 34 | 6 | 3 | 5 |
5Q LOSS WILD-TYPE | 14 | 78 | 50 | 56 | 48 |
P value = 0.0128 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
6P LOSS MUTATED | 1 | 16 | 12 | 3 | 14 |
6P LOSS WILD-TYPE | 14 | 96 | 44 | 56 | 39 |
P value = 0.0395 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
6P LOSS MUTATED | 6 | 25 | 15 |
6P LOSS WILD-TYPE | 66 | 90 | 93 |
P value = 0.0408 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
6P LOSS MUTATED | 5 | 36 | 5 |
6P LOSS WILD-TYPE | 67 | 149 | 30 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
6Q LOSS MUTATED | 4 | 31 | 15 | 3 | 21 |
6Q LOSS WILD-TYPE | 11 | 81 | 41 | 56 | 32 |
P value = 0.0234 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
6Q LOSS MUTATED | 10 | 36 | 28 |
6Q LOSS WILD-TYPE | 62 | 79 | 80 |
P value = 0.0302 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
6Q LOSS MUTATED | 10 | 54 | 10 |
6Q LOSS WILD-TYPE | 62 | 131 | 25 |
P value = 0.0362 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
6Q LOSS MUTATED | 8 | 28 | 17 | 11 | 10 |
6Q LOSS WILD-TYPE | 52 | 67 | 55 | 14 | 33 |
P value = 0.00862 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
7P LOSS MUTATED | 13 | 8 | 5 |
7P LOSS WILD-TYPE | 59 | 107 | 103 |
P value = 0.0416 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
7Q LOSS MUTATED | 15 | 12 | 9 |
7Q LOSS WILD-TYPE | 57 | 103 | 99 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
8P LOSS MUTATED | 1 | 51 | 5 | 13 | 12 |
8P LOSS WILD-TYPE | 14 | 61 | 51 | 46 | 41 |
P value = 0.0164 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
8P LOSS MUTATED | 19 | 18 | 18 | 27 |
8P LOSS WILD-TYPE | 38 | 80 | 51 | 41 |
P value = 0.0203 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
8P LOSS MUTATED | 28 | 13 | 41 |
8P LOSS WILD-TYPE | 77 | 62 | 74 |
P value = 0.0439 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8P LOSS MUTATED | 19 | 22 | 14 | 8 | 19 |
8P LOSS WILD-TYPE | 41 | 73 | 58 | 17 | 24 |
P value = 0.00685 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
8P LOSS MUTATED | 31 | 13 | 38 |
8P LOSS WILD-TYPE | 70 | 66 | 64 |
P value = 0.00156 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
8Q LOSS MUTATED | 0 | 18 | 0 | 5 | 2 |
8Q LOSS WILD-TYPE | 15 | 94 | 56 | 54 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
8Q LOSS MUTATED | 16 | 2 | 7 |
8Q LOSS WILD-TYPE | 56 | 113 | 101 |
P value = 8e-05 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
8Q LOSS MUTATED | 6 | 0 | 12 | 7 |
8Q LOSS WILD-TYPE | 51 | 98 | 57 | 61 |
P value = 3e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
8Q LOSS MUTATED | 16 | 5 | 4 |
8Q LOSS WILD-TYPE | 56 | 180 | 31 |
P value = 0.00721 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
8Q LOSS MUTATED | 16 | 2 | 7 |
8Q LOSS WILD-TYPE | 89 | 73 | 108 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8Q LOSS MUTATED | 14 | 3 | 1 | 2 | 5 |
8Q LOSS WILD-TYPE | 46 | 92 | 71 | 23 | 38 |
P value = 0.00607 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
8Q LOSS MUTATED | 16 | 2 | 7 |
8Q LOSS WILD-TYPE | 85 | 77 | 95 |
P value = 0.00825 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
8Q LOSS MUTATED | 5 | 2 | 7 | 4 | 7 |
8Q LOSS WILD-TYPE | 24 | 77 | 92 | 38 | 26 |
P value = 0.0013 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
9P LOSS MUTATED | 2 | 34 | 6 | 5 | 6 |
9P LOSS WILD-TYPE | 13 | 78 | 50 | 54 | 47 |
P value = 0.0147 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
9Q LOSS MUTATED | 1 | 29 | 8 | 5 | 5 |
9Q LOSS WILD-TYPE | 14 | 83 | 48 | 54 | 48 |
P value = 0.0107 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
9Q LOSS MUTATED | 25 | 10 | 10 |
9Q LOSS WILD-TYPE | 76 | 69 | 92 |
P value = 0.00271 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
10P LOSS MUTATED | 3 | 36 | 15 | 6 | 6 |
10P LOSS WILD-TYPE | 12 | 76 | 41 | 53 | 47 |
P value = 0.00401 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
10Q LOSS MUTATED | 2 | 40 | 15 | 7 | 9 |
10Q LOSS WILD-TYPE | 13 | 72 | 41 | 52 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
11P LOSS MUTATED | 1 | 46 | 26 | 6 | 21 |
11P LOSS WILD-TYPE | 14 | 66 | 30 | 53 | 32 |
P value = 0.0255 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 41 | 64 |
11P LOSS MUTATED | 11 | 18 | 18 |
11P LOSS WILD-TYPE | 48 | 23 | 46 |
P value = 0.0264 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
11P LOSS MUTATED | 5 | 9 | 16 | 8 | 9 |
11P LOSS WILD-TYPE | 27 | 38 | 29 | 15 | 8 |
P value = 0.0342 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
11P LOSS MUTATED | 24 | 37 | 14 | 25 |
11P LOSS WILD-TYPE | 33 | 61 | 55 | 43 |
P value = 0.0204 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
11P LOSS MUTATED | 10 | 29 | 42 | 12 | 4 |
11P LOSS WILD-TYPE | 19 | 50 | 57 | 30 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
11Q LOSS MUTATED | 0 | 42 | 34 | 13 | 26 |
11Q LOSS WILD-TYPE | 15 | 70 | 22 | 46 | 27 |
P value = 0.00803 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
11Q LOSS MUTATED | 17 | 50 | 29 | 8 | 11 |
11Q LOSS WILD-TYPE | 43 | 45 | 43 | 17 | 32 |
P value = 0.00086 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
12P LOSS MUTATED | 2 | 4 | 6 | 10 | 0 |
12P LOSS WILD-TYPE | 30 | 43 | 39 | 13 | 17 |
P value = 0.0184 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
12Q LOSS MUTATED | 4 | 10 | 1 |
12Q LOSS WILD-TYPE | 68 | 105 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
13Q LOSS MUTATED | 2 | 43 | 15 | 2 | 18 |
13Q LOSS WILD-TYPE | 13 | 69 | 41 | 57 | 35 |
P value = 0.0137 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
13Q LOSS MUTATED | 19 | 24 | 10 | 25 |
13Q LOSS WILD-TYPE | 38 | 74 | 59 | 43 |
P value = 0.0272 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
13Q LOSS MUTATED | 12 | 52 | 14 |
13Q LOSS WILD-TYPE | 60 | 133 | 21 |
P value = 0.0178 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
13Q LOSS MUTATED | 22 | 16 | 42 |
13Q LOSS WILD-TYPE | 83 | 59 | 73 |
P value = 0.00193 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
13Q LOSS MUTATED | 7 | 29 | 16 | 12 | 16 |
13Q LOSS WILD-TYPE | 53 | 66 | 56 | 13 | 27 |
P value = 0.0456 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
13Q LOSS MUTATED | 8 | 21 | 30 | 13 | 2 |
13Q LOSS WILD-TYPE | 21 | 58 | 69 | 29 | 31 |
P value = 0.05 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
15Q LOSS MUTATED | 1 | 23 | 13 | 4 | 6 |
15Q LOSS WILD-TYPE | 14 | 89 | 43 | 55 | 47 |
P value = 0.0427 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
16P LOSS MUTATED | 11 | 5 | 7 | 9 |
16P LOSS WILD-TYPE | 46 | 93 | 62 | 59 |
P value = 0.0112 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
16P LOSS MUTATED | 6 | 10 | 2 | 6 | 8 |
16P LOSS WILD-TYPE | 54 | 85 | 70 | 19 | 35 |
P value = 0.00793 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
16Q LOSS MUTATED | 19 | 12 | 12 |
16Q LOSS WILD-TYPE | 53 | 103 | 96 |
P value = 0.00491 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
16Q LOSS MUTATED | 11 | 8 | 18 | 6 |
16Q LOSS WILD-TYPE | 46 | 90 | 51 | 62 |
P value = 0.00249 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
16Q LOSS MUTATED | 20 | 20 | 3 |
16Q LOSS WILD-TYPE | 52 | 165 | 32 |
P value = 0.0108 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
16Q LOSS MUTATED | 24 | 9 | 10 |
16Q LOSS WILD-TYPE | 81 | 66 | 105 |
P value = 0.00251 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
16Q LOSS MUTATED | 16 | 12 | 3 | 6 | 6 |
16Q LOSS WILD-TYPE | 44 | 83 | 69 | 19 | 37 |
P value = 0.0404 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
16Q LOSS MUTATED | 22 | 11 | 9 |
16Q LOSS WILD-TYPE | 79 | 68 | 93 |
P value = 0.00043 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
16Q LOSS MUTATED | 4 | 6 | 14 | 4 | 14 |
16Q LOSS WILD-TYPE | 25 | 73 | 85 | 38 | 19 |
P value = 0.00432 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
17P LOSS MUTATED | 4 | 46 | 20 | 8 | 16 |
17P LOSS WILD-TYPE | 11 | 66 | 36 | 51 | 37 |
P value = 0.033 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
17P LOSS MUTATED | 19 | 47 | 28 |
17P LOSS WILD-TYPE | 53 | 68 | 80 |
P value = 0.048 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 41 | 64 |
17P LOSS MUTATED | 19 | 15 | 11 |
17P LOSS WILD-TYPE | 40 | 26 | 53 |
P value = 0.0135 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
17Q LOSS MUTATED | 2 | 13 | 12 | 1 | 6 |
17Q LOSS WILD-TYPE | 13 | 99 | 44 | 58 | 47 |
P value = 0.0208 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
17Q LOSS MUTATED | 5 | 21 | 8 |
17Q LOSS WILD-TYPE | 67 | 94 | 100 |
P value = 0.00733 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 41 | 64 |
17Q LOSS MUTATED | 10 | 3 | 1 |
17Q LOSS WILD-TYPE | 49 | 38 | 63 |
P value = 0.0151 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
18P LOSS MUTATED | 7 | 11 | 18 | 18 |
18P LOSS WILD-TYPE | 50 | 87 | 51 | 50 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
18P LOSS MUTATED | 1 | 8 | 18 | 13 | 14 |
18P LOSS WILD-TYPE | 28 | 71 | 81 | 29 | 19 |
P value = 0.00104 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
18Q LOSS MUTATED | 1 | 40 | 5 | 14 | 13 |
18Q LOSS WILD-TYPE | 14 | 72 | 51 | 45 | 40 |
P value = 0.00957 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 115 | 108 |
18Q LOSS MUTATED | 27 | 20 | 26 |
18Q LOSS WILD-TYPE | 45 | 95 | 82 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
18Q LOSS MUTATED | 14 | 9 | 26 | 24 |
18Q LOSS WILD-TYPE | 43 | 89 | 43 | 44 |
P value = 0.00103 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
18Q LOSS MUTATED | 27 | 33 | 13 |
18Q LOSS WILD-TYPE | 45 | 152 | 22 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
18Q LOSS MUTATED | 25 | 15 | 11 | 5 | 17 |
18Q LOSS WILD-TYPE | 35 | 80 | 61 | 20 | 26 |
P value = 0.0173 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
18Q LOSS MUTATED | 34 | 12 | 27 |
18Q LOSS WILD-TYPE | 67 | 67 | 75 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
18Q LOSS MUTATED | 4 | 10 | 23 | 17 | 19 |
18Q LOSS WILD-TYPE | 25 | 69 | 76 | 25 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
19P LOSS MUTATED | 2 | 40 | 4 | 1 | 13 |
19P LOSS WILD-TYPE | 13 | 72 | 52 | 58 | 40 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
19P LOSS MUTATED | 13 | 8 | 16 | 23 |
19P LOSS WILD-TYPE | 44 | 90 | 53 | 45 |
P value = 0.00142 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
19P LOSS MUTATED | 17 | 28 | 15 |
19P LOSS WILD-TYPE | 55 | 157 | 20 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
19P LOSS MUTATED | 13 | 16 | 6 | 11 | 14 |
19P LOSS WILD-TYPE | 47 | 79 | 66 | 14 | 29 |
P value = 0.0442 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
19P LOSS MUTATED | 25 | 9 | 25 |
19P LOSS WILD-TYPE | 76 | 70 | 77 |
P value = 0.00312 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
19Q LOSS MUTATED | 0 | 15 | 3 | 1 | 11 |
19Q LOSS WILD-TYPE | 15 | 97 | 53 | 58 | 42 |
P value = 0.018 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
20P LOSS MUTATED | 1 | 5 | 5 | 11 |
20P LOSS WILD-TYPE | 56 | 93 | 64 | 57 |
P value = 0.00463 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 79 | 102 |
20P LOSS MUTATED | 3 | 3 | 15 |
20P LOSS WILD-TYPE | 98 | 76 | 87 |
P value = 0.00441 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
20P LOSS MUTATED | 1 | 3 | 4 | 9 | 4 |
20P LOSS WILD-TYPE | 28 | 76 | 95 | 33 | 29 |
P value = 0.00061 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
21Q LOSS MUTATED | 1 | 32 | 8 | 5 | 3 |
21Q LOSS WILD-TYPE | 14 | 80 | 48 | 54 | 50 |
P value = 0.0243 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
21Q LOSS MUTATED | 6 | 5 | 2 | 4 | 6 |
21Q LOSS WILD-TYPE | 26 | 42 | 43 | 19 | 11 |
P value = 0.00879 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 98 | 69 | 68 |
21Q LOSS MUTATED | 14 | 8 | 10 | 17 |
21Q LOSS WILD-TYPE | 43 | 90 | 59 | 51 |
P value = 0.00442 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
21Q LOSS MUTATED | 12 | 24 | 13 |
21Q LOSS WILD-TYPE | 60 | 161 | 22 |
P value = 0.0269 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
21Q LOSS MUTATED | 8 | 13 | 8 | 9 | 11 |
21Q LOSS WILD-TYPE | 52 | 82 | 64 | 16 | 32 |
P value = 0.00403 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 15 | 112 | 56 | 59 | 53 |
22Q LOSS MUTATED | 2 | 39 | 14 | 6 | 10 |
22Q LOSS WILD-TYPE | 13 | 73 | 42 | 53 | 43 |
P value = 0.0197 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
22Q LOSS MUTATED | 21 | 36 | 14 |
22Q LOSS WILD-TYPE | 51 | 149 | 21 |
P value = 0.00243 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 75 | 115 |
XP LOSS MUTATED | 21 | 8 | 36 |
XP LOSS WILD-TYPE | 84 | 67 | 79 |
P value = 0.0116 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 29 | 79 | 99 | 42 | 33 |
XP LOSS MUTATED | 8 | 8 | 27 | 14 | 6 |
XP LOSS WILD-TYPE | 21 | 71 | 72 | 28 | 27 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/22507939/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/22541064/CESC-TP.transferedmergedcluster.txt
-
Number of patients = 295
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.