This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 20 genes and 10 molecular subtypes across 194 patients, 39 significant findings detected with P value < 0.05 and Q value < 0.25.
-
PTEN mutation correlated to 'MRNASEQ_CNMF'.
-
HLA-B mutation correlated to 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
HLA-A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
KRAS mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
EP300 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
-
MAPK1 mutation correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
-
MLL3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
ARID1A mutation correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
NFE2L2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
PIK3CA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
-
C3ORF70 mutation correlated to 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
IFNGR1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
KRAS | 11 (6%) | 183 |
0.01 (0.109) |
0.00029 (0.029) |
1 (1.00) |
0.218 (0.516) |
0.00613 (0.109) |
0.00146 (0.0584) |
0.00331 (0.109) |
0.00074 (0.037) |
0.00994 (0.109) |
8e-05 (0.016) |
NFE2L2 | 12 (6%) | 182 |
0.808 (0.951) |
0.0307 (0.213) |
0.496 (0.719) |
0.0486 (0.249) |
0.537 (0.749) |
0.0456 (0.241) |
0.0246 (0.183) |
0.0189 (0.157) |
0.033 (0.213) |
0.556 (0.753) |
HLA-A | 16 (8%) | 178 |
0.603 (0.784) |
0.0104 (0.109) |
0.329 (0.611) |
0.018 (0.157) |
0.00518 (0.109) |
0.0657 (0.292) |
0.126 (0.432) |
0.00754 (0.109) |
0.217 (0.516) |
0.465 (0.695) |
ARID1A | 14 (7%) | 180 |
0.0114 (0.114) |
0.0573 (0.267) |
0.853 (0.97) |
0.125 (0.432) |
0.205 (0.502) |
0.00072 (0.037) |
0.132 (0.441) |
0.00461 (0.109) |
0.231 (0.532) |
0.00935 (0.109) |
HLA-B | 11 (6%) | 183 |
0.569 (0.758) |
0.396 (0.672) |
0.908 (1.00) |
0.328 (0.611) |
0.452 (0.695) |
0.0905 (0.342) |
0.0177 (0.157) |
0.136 (0.445) |
0.00737 (0.109) |
0.0353 (0.213) |
MAPK1 | 9 (5%) | 185 |
0.0403 (0.224) |
0.144 (0.462) |
0.335 (0.614) |
0.976 (1.00) |
0.0934 (0.346) |
0.0539 (0.263) |
0.0458 (0.241) |
0.082 (0.328) |
0.0362 (0.213) |
0.33 (0.611) |
MLL3 | 29 (15%) | 165 |
0.15 (0.462) |
0.0539 (0.263) |
0.495 (0.719) |
0.0209 (0.168) |
0.0351 (0.213) |
0.0223 (0.172) |
0.0724 (0.308) |
0.837 (0.97) |
0.32 (0.611) |
0.99 (1.00) |
C3ORF70 | 4 (2%) | 190 |
0.921 (1.00) |
0.0884 (0.342) |
0.469 (0.695) |
0.179 (0.496) |
0.656 (0.821) |
0.127 (0.432) |
0.0148 (0.141) |
0.298 (0.611) |
0.00816 (0.109) |
0.0086 (0.109) |
EP300 | 21 (11%) | 173 |
0.121 (0.431) |
0.201 (0.502) |
0.182 (0.496) |
0.0393 (0.224) |
0.148 (0.462) |
0.0727 (0.308) |
0.3 (0.611) |
0.0096 (0.109) |
1 (1.00) |
0.296 (0.611) |
PTEN | 15 (8%) | 179 |
0.074 (0.308) |
0.747 (0.894) |
0.687 (0.836) |
0.591 (0.783) |
0.0334 (0.213) |
0.227 (0.528) |
0.184 (0.496) |
0.193 (0.496) |
0.387 (0.661) |
0.0906 (0.342) |
PIK3CA | 53 (27%) | 141 |
0.0609 (0.277) |
0.455 (0.695) |
0.64 (0.806) |
0.297 (0.611) |
0.219 (0.516) |
0.00398 (0.109) |
0.29 (0.611) |
0.345 (0.618) |
0.196 (0.496) |
0.0552 (0.263) |
IFNGR1 | 6 (3%) | 188 |
0.147 (0.462) |
1 (1.00) |
0.469 (0.695) |
0.911 (1.00) |
0.846 (0.97) |
1 (1.00) |
0.325 (0.611) |
0.0333 (0.213) |
0.192 (0.496) |
0.174 (0.496) |
MLL2 | 22 (11%) | 172 |
0.434 (0.695) |
0.602 (0.784) |
0.368 (0.641) |
0.238 (0.542) |
0.52 (0.737) |
0.078 (0.318) |
0.715 (0.862) |
0.314 (0.611) |
0.69 (0.836) |
0.863 (0.975) |
FBXW7 | 19 (10%) | 175 |
0.555 (0.753) |
0.911 (1.00) |
0.849 (0.97) |
0.971 (1.00) |
0.286 (0.611) |
0.677 (0.836) |
0.181 (0.496) |
0.455 (0.695) |
0.42 (0.695) |
0.504 (0.724) |
CASP8 | 9 (5%) | 185 |
0.412 (0.692) |
0.524 (0.739) |
0.618 (0.798) |
0.169 (0.496) |
0.195 (0.496) |
0.463 (0.695) |
1 (1.00) |
0.451 (0.695) |
0.317 (0.611) |
0.784 (0.928) |
FAT2 | 11 (6%) | 183 |
0.843 (0.97) |
0.195 (0.496) |
1 (1.00) |
0.622 (0.798) |
0.349 (0.618) |
0.483 (0.71) |
0.539 (0.749) |
0.759 (0.904) |
0.424 (0.695) |
0.337 (0.614) |
ZNF750 | 9 (5%) | 185 |
0.187 (0.496) |
1 (1.00) |
1 (1.00) |
0.319 (0.611) |
0.559 (0.753) |
0.303 (0.611) |
0.288 (0.611) |
0.0963 (0.35) |
0.318 (0.611) |
0.351 (0.618) |
C12ORF43 | 4 (2%) | 190 |
0.851 (0.97) |
0.677 (0.836) |
0.912 (1.00) |
0.456 (0.695) |
0.386 (0.661) |
0.206 (0.502) |
0.517 (0.737) |
0.561 (0.753) |
||
BAP1 | 4 (2%) | 190 |
0.167 (0.496) |
0.453 (0.695) |
0.44 (0.695) |
0.456 (0.695) |
0.683 (0.836) |
0.352 (0.618) |
0.553 (0.753) |
0.629 (0.801) |
||
USP28 | 4 (2%) | 190 |
0.636 (0.805) |
0.251 (0.564) |
0.182 (0.496) |
0.909 (1.00) |
0.603 (0.784) |
1 (1.00) |
0.467 (0.695) |
0.937 (1.00) |
0.324 (0.611) |
0.274 (0.61) |
P value = 0.074 (Fisher's exact test), Q value = 0.31
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
PTEN MUTATED | 0 | 2 | 4 | 7 | 2 |
PTEN WILD-TYPE | 6 | 70 | 27 | 37 | 36 |
P value = 0.747 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
PTEN MUTATED | 3 | 5 | 7 |
PTEN WILD-TYPE | 47 | 68 | 64 |
P value = 0.687 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
PTEN MUTATED | 2 | 2 | 5 |
PTEN WILD-TYPE | 43 | 31 | 50 |
P value = 0.591 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
PTEN MUTATED | 2 | 2 | 4 | 0 | 1 |
PTEN WILD-TYPE | 25 | 38 | 28 | 18 | 15 |
P value = 0.0334 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
PTEN MUTATED | 5 | 8 | 2 | 0 |
PTEN WILD-TYPE | 34 | 56 | 47 | 41 |
P value = 0.227 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
PTEN MUTATED | 6 | 9 | 0 |
PTEN WILD-TYPE | 43 | 111 | 24 |
P value = 0.184 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
PTEN MUTATED | 8 | 3 | 4 |
PTEN WILD-TYPE | 53 | 52 | 74 |
P value = 0.193 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
PTEN MUTATED | 4 | 6 | 3 | 2 | 0 |
PTEN WILD-TYPE | 37 | 44 | 55 | 13 | 30 |
P value = 0.387 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
PTEN MUTATED | 7 | 4 | 4 |
PTEN WILD-TYPE | 49 | 56 | 64 |
P value = 0.0906 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
PTEN MUTATED | 4 | 6 | 5 | 0 | 0 |
PTEN WILD-TYPE | 15 | 56 | 54 | 22 | 22 |
P value = 0.569 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
HLA-B MUTATED | 1 | 5 | 2 | 2 | 1 |
HLA-B WILD-TYPE | 5 | 67 | 29 | 42 | 37 |
P value = 0.396 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
HLA-B MUTATED | 1 | 6 | 4 |
HLA-B WILD-TYPE | 49 | 67 | 67 |
P value = 0.908 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
HLA-B MUTATED | 4 | 2 | 3 |
HLA-B WILD-TYPE | 41 | 31 | 52 |
P value = 0.328 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
HLA-B MUTATED | 3 | 1 | 4 | 1 | 0 |
HLA-B WILD-TYPE | 24 | 39 | 28 | 17 | 16 |
P value = 0.452 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
HLA-B MUTATED | 2 | 4 | 1 | 4 |
HLA-B WILD-TYPE | 37 | 60 | 48 | 37 |
P value = 0.0905 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
HLA-B MUTATED | 0 | 10 | 1 |
HLA-B WILD-TYPE | 49 | 110 | 23 |
P value = 0.0177 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
HLA-B MUTATED | 1 | 1 | 9 |
HLA-B WILD-TYPE | 60 | 54 | 69 |
P value = 0.136 (Fisher's exact test), Q value = 0.44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
HLA-B MUTATED | 0 | 5 | 2 | 1 | 3 |
HLA-B WILD-TYPE | 41 | 45 | 56 | 14 | 27 |
P value = 0.00737 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
HLA-B MUTATED | 2 | 0 | 8 |
HLA-B WILD-TYPE | 54 | 60 | 60 |
P value = 0.0353 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
HLA-B MUTATED | 0 | 1 | 8 | 1 | 0 |
HLA-B WILD-TYPE | 19 | 61 | 51 | 21 | 22 |
P value = 0.603 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
HLA-A MUTATED | 0 | 4 | 2 | 6 | 3 |
HLA-A WILD-TYPE | 6 | 68 | 29 | 38 | 35 |
P value = 0.0104 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
HLA-A MUTATED | 0 | 6 | 10 |
HLA-A WILD-TYPE | 50 | 67 | 61 |
P value = 0.329 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
HLA-A MUTATED | 5 | 3 | 2 |
HLA-A WILD-TYPE | 40 | 30 | 53 |
P value = 0.018 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
HLA-A MUTATED | 5 | 0 | 4 | 1 | 0 |
HLA-A WILD-TYPE | 22 | 40 | 28 | 17 | 16 |
P value = 0.00518 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
HLA-A MUTATED | 2 | 6 | 0 | 8 |
HLA-A WILD-TYPE | 37 | 58 | 49 | 33 |
P value = 0.0657 (Fisher's exact test), Q value = 0.29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
HLA-A MUTATED | 1 | 11 | 4 |
HLA-A WILD-TYPE | 48 | 109 | 20 |
P value = 0.126 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
HLA-A MUTATED | 2 | 4 | 10 |
HLA-A WILD-TYPE | 59 | 51 | 68 |
P value = 0.00754 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
HLA-A MUTATED | 0 | 4 | 3 | 3 | 6 |
HLA-A WILD-TYPE | 41 | 46 | 55 | 12 | 24 |
P value = 0.217 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
HLA-A MUTATED | 2 | 4 | 8 |
HLA-A WILD-TYPE | 54 | 56 | 60 |
P value = 0.465 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
HLA-A MUTATED | 1 | 4 | 6 | 3 | 0 |
HLA-A WILD-TYPE | 18 | 58 | 53 | 19 | 22 |
P value = 0.01 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
KRAS MUTATED | 1 | 1 | 1 | 7 | 1 |
KRAS WILD-TYPE | 5 | 71 | 30 | 37 | 37 |
P value = 0.00029 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
KRAS MUTATED | 8 | 0 | 3 |
KRAS WILD-TYPE | 42 | 73 | 68 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
KRAS MUTATED | 3 | 2 | 3 |
KRAS WILD-TYPE | 42 | 31 | 52 |
P value = 0.218 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
KRAS MUTATED | 2 | 2 | 1 | 0 | 3 |
KRAS WILD-TYPE | 25 | 38 | 31 | 18 | 13 |
P value = 0.00613 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
KRAS MUTATED | 4 | 0 | 6 | 1 |
KRAS WILD-TYPE | 35 | 64 | 43 | 40 |
P value = 0.00146 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
KRAS MUTATED | 8 | 2 | 1 |
KRAS WILD-TYPE | 41 | 118 | 23 |
P value = 0.00331 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
KRAS MUTATED | 7 | 4 | 0 |
KRAS WILD-TYPE | 54 | 51 | 78 |
P value = 0.00074 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
KRAS MUTATED | 8 | 0 | 2 | 1 | 0 |
KRAS WILD-TYPE | 33 | 50 | 56 | 14 | 30 |
P value = 0.00994 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
KRAS MUTATED | 6 | 5 | 0 |
KRAS WILD-TYPE | 50 | 55 | 68 |
P value = 8e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
KRAS MUTATED | 4 | 2 | 0 | 0 | 5 |
KRAS WILD-TYPE | 15 | 60 | 59 | 22 | 17 |
P value = 0.434 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
MLL2 MUTATED | 0 | 5 | 5 | 7 | 5 |
MLL2 WILD-TYPE | 6 | 67 | 26 | 37 | 33 |
P value = 0.602 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
MLL2 MUTATED | 6 | 10 | 6 |
MLL2 WILD-TYPE | 44 | 63 | 65 |
P value = 0.368 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
MLL2 MUTATED | 4 | 6 | 5 |
MLL2 WILD-TYPE | 41 | 27 | 50 |
P value = 0.238 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
MLL2 MUTATED | 2 | 2 | 7 | 2 | 2 |
MLL2 WILD-TYPE | 25 | 38 | 25 | 16 | 14 |
P value = 0.52 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
MLL2 MUTATED | 5 | 10 | 4 | 3 |
MLL2 WILD-TYPE | 34 | 54 | 45 | 38 |
P value = 0.078 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
MLL2 MUTATED | 4 | 18 | 0 |
MLL2 WILD-TYPE | 45 | 102 | 24 |
P value = 0.715 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
MLL2 MUTATED | 8 | 7 | 7 |
MLL2 WILD-TYPE | 53 | 48 | 71 |
P value = 0.314 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
MLL2 MUTATED | 3 | 8 | 9 | 0 | 2 |
MLL2 WILD-TYPE | 38 | 42 | 49 | 15 | 28 |
P value = 0.69 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
MLL2 MUTATED | 6 | 9 | 7 |
MLL2 WILD-TYPE | 50 | 51 | 61 |
P value = 0.863 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
MLL2 MUTATED | 1 | 7 | 9 | 2 | 3 |
MLL2 WILD-TYPE | 18 | 55 | 50 | 20 | 19 |
P value = 0.555 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
FBXW7 MUTATED | 0 | 5 | 2 | 5 | 6 |
FBXW7 WILD-TYPE | 6 | 67 | 29 | 39 | 32 |
P value = 0.911 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
FBXW7 MUTATED | 5 | 8 | 6 |
FBXW7 WILD-TYPE | 45 | 65 | 65 |
P value = 0.849 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
FBXW7 MUTATED | 6 | 5 | 6 |
FBXW7 WILD-TYPE | 39 | 28 | 49 |
P value = 0.971 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
FBXW7 MUTATED | 3 | 5 | 4 | 2 | 3 |
FBXW7 WILD-TYPE | 24 | 35 | 28 | 16 | 13 |
P value = 0.286 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
FBXW7 MUTATED | 1 | 9 | 5 | 4 |
FBXW7 WILD-TYPE | 38 | 55 | 44 | 37 |
P value = 0.677 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
FBXW7 MUTATED | 6 | 12 | 1 |
FBXW7 WILD-TYPE | 43 | 108 | 23 |
P value = 0.181 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
FBXW7 MUTATED | 7 | 2 | 10 |
FBXW7 WILD-TYPE | 54 | 53 | 68 |
P value = 0.455 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
FBXW7 MUTATED | 4 | 8 | 3 | 1 | 3 |
FBXW7 WILD-TYPE | 37 | 42 | 55 | 14 | 27 |
P value = 0.42 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
FBXW7 MUTATED | 8 | 4 | 7 |
FBXW7 WILD-TYPE | 48 | 56 | 61 |
P value = 0.504 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
FBXW7 MUTATED | 4 | 5 | 7 | 2 | 1 |
FBXW7 WILD-TYPE | 15 | 57 | 52 | 20 | 21 |
P value = 0.121 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
EP300 MUTATED | 1 | 6 | 7 | 2 | 4 |
EP300 WILD-TYPE | 5 | 66 | 24 | 42 | 34 |
P value = 0.201 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
EP300 MUTATED | 4 | 12 | 5 |
EP300 WILD-TYPE | 46 | 61 | 66 |
P value = 0.182 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
EP300 MUTATED | 2 | 4 | 9 |
EP300 WILD-TYPE | 43 | 29 | 46 |
P value = 0.0393 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
EP300 MUTATED | 2 | 5 | 8 | 0 | 0 |
EP300 WILD-TYPE | 25 | 35 | 24 | 18 | 16 |
P value = 0.148 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
EP300 MUTATED | 6 | 10 | 2 | 3 |
EP300 WILD-TYPE | 33 | 54 | 47 | 38 |
P value = 0.0727 (Fisher's exact test), Q value = 0.31
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
EP300 MUTATED | 2 | 18 | 1 |
EP300 WILD-TYPE | 47 | 102 | 23 |
P value = 0.3 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
EP300 MUTATED | 7 | 3 | 11 |
EP300 WILD-TYPE | 54 | 52 | 67 |
P value = 0.0096 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
EP300 MUTATED | 1 | 9 | 10 | 1 | 0 |
EP300 WILD-TYPE | 40 | 41 | 48 | 14 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
EP300 MUTATED | 5 | 6 | 7 |
EP300 WILD-TYPE | 51 | 54 | 61 |
P value = 0.296 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
EP300 MUTATED | 2 | 6 | 9 | 1 | 0 |
EP300 WILD-TYPE | 17 | 56 | 50 | 21 | 22 |
P value = 0.0403 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
MAPK1 MUTATED | 1 | 1 | 4 | 1 | 2 |
MAPK1 WILD-TYPE | 5 | 71 | 27 | 43 | 36 |
P value = 0.144 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
MAPK1 MUTATED | 0 | 4 | 5 |
MAPK1 WILD-TYPE | 50 | 69 | 66 |
P value = 0.335 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
MAPK1 MUTATED | 3 | 0 | 4 |
MAPK1 WILD-TYPE | 42 | 33 | 51 |
P value = 0.976 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
MAPK1 MUTATED | 2 | 2 | 1 | 1 | 1 |
MAPK1 WILD-TYPE | 25 | 38 | 31 | 17 | 15 |
P value = 0.0934 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
MAPK1 MUTATED | 2 | 6 | 0 | 1 |
MAPK1 WILD-TYPE | 37 | 58 | 49 | 40 |
P value = 0.0539 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
MAPK1 MUTATED | 0 | 9 | 0 |
MAPK1 WILD-TYPE | 49 | 111 | 24 |
P value = 0.0458 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
MAPK1 MUTATED | 0 | 5 | 4 |
MAPK1 WILD-TYPE | 61 | 50 | 74 |
P value = 0.082 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
MAPK1 MUTATED | 0 | 2 | 6 | 1 | 0 |
MAPK1 WILD-TYPE | 41 | 48 | 52 | 14 | 30 |
P value = 0.0362 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
MAPK1 MUTATED | 0 | 6 | 3 |
MAPK1 WILD-TYPE | 56 | 54 | 65 |
P value = 0.33 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
MAPK1 MUTATED | 0 | 6 | 3 | 0 | 0 |
MAPK1 WILD-TYPE | 19 | 56 | 56 | 22 | 22 |
P value = 0.15 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
MLL3 MUTATED | 0 | 7 | 9 | 7 | 6 |
MLL3 WILD-TYPE | 6 | 65 | 22 | 37 | 32 |
P value = 0.0539 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
MLL3 MUTATED | 5 | 17 | 7 |
MLL3 WILD-TYPE | 45 | 56 | 64 |
P value = 0.495 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
MLL3 MUTATED | 4 | 6 | 8 |
MLL3 WILD-TYPE | 41 | 27 | 47 |
P value = 0.0209 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
MLL3 MUTATED | 3 | 4 | 10 | 0 | 1 |
MLL3 WILD-TYPE | 24 | 36 | 22 | 18 | 15 |
P value = 0.0351 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
MLL3 MUTATED | 1 | 14 | 6 | 7 |
MLL3 WILD-TYPE | 38 | 50 | 43 | 34 |
P value = 0.0223 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
MLL3 MUTATED | 5 | 23 | 0 |
MLL3 WILD-TYPE | 44 | 97 | 24 |
P value = 0.0724 (Fisher's exact test), Q value = 0.31
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
MLL3 MUTATED | 4 | 10 | 15 |
MLL3 WILD-TYPE | 57 | 45 | 63 |
P value = 0.837 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
MLL3 MUTATED | 5 | 8 | 10 | 3 | 3 |
MLL3 WILD-TYPE | 36 | 42 | 48 | 12 | 27 |
P value = 0.32 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
MLL3 MUTATED | 5 | 10 | 12 |
MLL3 WILD-TYPE | 51 | 50 | 56 |
P value = 0.99 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
MLL3 MUTATED | 2 | 9 | 10 | 3 | 3 |
MLL3 WILD-TYPE | 17 | 53 | 49 | 19 | 19 |
P value = 0.0114 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
ARID1A MUTATED | 0 | 2 | 2 | 9 | 1 |
ARID1A WILD-TYPE | 6 | 70 | 29 | 35 | 37 |
P value = 0.0573 (Fisher's exact test), Q value = 0.27
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
ARID1A MUTATED | 7 | 2 | 5 |
ARID1A WILD-TYPE | 43 | 71 | 66 |
P value = 0.853 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
ARID1A MUTATED | 3 | 3 | 5 |
ARID1A WILD-TYPE | 42 | 30 | 50 |
P value = 0.125 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ARID1A MUTATED | 2 | 2 | 3 | 0 | 4 |
ARID1A WILD-TYPE | 25 | 38 | 29 | 18 | 12 |
P value = 0.205 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
ARID1A MUTATED | 5 | 2 | 5 | 2 |
ARID1A WILD-TYPE | 34 | 62 | 44 | 39 |
P value = 0.00072 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ARID1A MUTATED | 10 | 4 | 0 |
ARID1A WILD-TYPE | 39 | 116 | 24 |
P value = 0.132 (Fisher's exact test), Q value = 0.44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
ARID1A MUTATED | 8 | 2 | 4 |
ARID1A WILD-TYPE | 53 | 53 | 74 |
P value = 0.00461 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ARID1A MUTATED | 7 | 1 | 1 | 3 | 2 |
ARID1A WILD-TYPE | 34 | 49 | 57 | 12 | 28 |
P value = 0.231 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
ARID1A MUTATED | 6 | 4 | 2 |
ARID1A WILD-TYPE | 50 | 56 | 66 |
P value = 0.00935 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
ARID1A MUTATED | 5 | 1 | 3 | 1 | 2 |
ARID1A WILD-TYPE | 14 | 61 | 56 | 21 | 20 |
P value = 0.808 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
NFE2L2 MUTATED | 0 | 4 | 2 | 2 | 4 |
NFE2L2 WILD-TYPE | 6 | 68 | 29 | 42 | 34 |
P value = 0.0307 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
NFE2L2 MUTATED | 0 | 8 | 4 |
NFE2L2 WILD-TYPE | 50 | 65 | 67 |
P value = 0.496 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
NFE2L2 MUTATED | 4 | 3 | 2 |
NFE2L2 WILD-TYPE | 41 | 30 | 53 |
P value = 0.0486 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
NFE2L2 MUTATED | 1 | 0 | 4 | 3 | 1 |
NFE2L2 WILD-TYPE | 26 | 40 | 28 | 15 | 15 |
P value = 0.537 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
NFE2L2 MUTATED | 3 | 5 | 1 | 3 |
NFE2L2 WILD-TYPE | 36 | 59 | 48 | 38 |
P value = 0.0456 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
NFE2L2 MUTATED | 0 | 11 | 1 |
NFE2L2 WILD-TYPE | 49 | 109 | 23 |
P value = 0.0246 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
NFE2L2 MUTATED | 0 | 5 | 7 |
NFE2L2 WILD-TYPE | 61 | 50 | 71 |
P value = 0.0189 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
NFE2L2 MUTATED | 0 | 1 | 6 | 3 | 2 |
NFE2L2 WILD-TYPE | 41 | 49 | 52 | 12 | 28 |
P value = 0.033 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
NFE2L2 MUTATED | 0 | 4 | 7 |
NFE2L2 WILD-TYPE | 56 | 56 | 61 |
P value = 0.556 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
NFE2L2 MUTATED | 0 | 5 | 4 | 2 | 0 |
NFE2L2 WILD-TYPE | 19 | 57 | 55 | 20 | 22 |
P value = 0.0609 (Fisher's exact test), Q value = 0.28
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
PIK3CA MUTATED | 1 | 12 | 10 | 17 | 13 |
PIK3CA WILD-TYPE | 5 | 60 | 21 | 27 | 25 |
P value = 0.455 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
PIK3CA MUTATED | 17 | 19 | 17 |
PIK3CA WILD-TYPE | 33 | 54 | 54 |
P value = 0.64 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
PIK3CA MUTATED | 12 | 6 | 11 |
PIK3CA WILD-TYPE | 33 | 27 | 44 |
P value = 0.297 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
PIK3CA MUTATED | 9 | 8 | 4 | 3 | 5 |
PIK3CA WILD-TYPE | 18 | 32 | 28 | 15 | 11 |
P value = 0.219 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
PIK3CA MUTATED | 11 | 19 | 16 | 6 |
PIK3CA WILD-TYPE | 28 | 45 | 33 | 35 |
P value = 0.00398 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
PIK3CA MUTATED | 19 | 32 | 1 |
PIK3CA WILD-TYPE | 30 | 88 | 23 |
P value = 0.29 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
PIK3CA MUTATED | 21 | 12 | 20 |
PIK3CA WILD-TYPE | 40 | 43 | 58 |
P value = 0.345 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
PIK3CA MUTATED | 14 | 17 | 13 | 4 | 5 |
PIK3CA WILD-TYPE | 27 | 33 | 45 | 11 | 25 |
P value = 0.196 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
PIK3CA MUTATED | 20 | 14 | 15 |
PIK3CA WILD-TYPE | 36 | 46 | 53 |
P value = 0.0552 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
PIK3CA MUTATED | 8 | 17 | 16 | 1 | 7 |
PIK3CA WILD-TYPE | 11 | 45 | 43 | 21 | 15 |
P value = 0.412 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
CASP8 MUTATED | 0 | 4 | 3 | 2 | 0 |
CASP8 WILD-TYPE | 6 | 68 | 28 | 42 | 38 |
P value = 0.524 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
CASP8 MUTATED | 1 | 5 | 3 |
CASP8 WILD-TYPE | 49 | 68 | 68 |
P value = 0.618 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
CASP8 MUTATED | 2 | 2 | 1 |
CASP8 WILD-TYPE | 43 | 31 | 54 |
P value = 0.169 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
CASP8 MUTATED | 1 | 0 | 2 | 2 | 0 |
CASP8 WILD-TYPE | 26 | 40 | 30 | 16 | 16 |
P value = 0.195 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
CASP8 MUTATED | 0 | 5 | 1 | 3 |
CASP8 WILD-TYPE | 39 | 59 | 48 | 38 |
P value = 0.463 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
CASP8 MUTATED | 1 | 6 | 2 |
CASP8 WILD-TYPE | 48 | 114 | 22 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
CASP8 MUTATED | 3 | 2 | 4 |
CASP8 WILD-TYPE | 58 | 53 | 74 |
P value = 0.451 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
CASP8 MUTATED | 0 | 3 | 3 | 1 | 2 |
CASP8 WILD-TYPE | 41 | 47 | 55 | 14 | 28 |
P value = 0.317 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
CASP8 MUTATED | 2 | 1 | 5 |
CASP8 WILD-TYPE | 54 | 59 | 63 |
P value = 0.784 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
CASP8 MUTATED | 1 | 2 | 4 | 1 | 0 |
CASP8 WILD-TYPE | 18 | 60 | 55 | 21 | 22 |
P value = 0.843 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
FAT2 MUTATED | 0 | 4 | 1 | 4 | 2 |
FAT2 WILD-TYPE | 6 | 68 | 30 | 40 | 36 |
P value = 0.195 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
FAT2 MUTATED | 1 | 7 | 3 |
FAT2 WILD-TYPE | 49 | 66 | 68 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
FAT2 MUTATED | 3 | 2 | 3 |
FAT2 WILD-TYPE | 42 | 31 | 52 |
P value = 0.622 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
FAT2 MUTATED | 1 | 2 | 3 | 2 | 0 |
FAT2 WILD-TYPE | 26 | 38 | 29 | 16 | 16 |
P value = 0.349 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
FAT2 MUTATED | 1 | 5 | 1 | 4 |
FAT2 WILD-TYPE | 38 | 59 | 48 | 37 |
P value = 0.483 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
FAT2 MUTATED | 1 | 9 | 1 |
FAT2 WILD-TYPE | 48 | 111 | 23 |
P value = 0.539 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
FAT2 MUTATED | 2 | 3 | 6 |
FAT2 WILD-TYPE | 59 | 52 | 72 |
P value = 0.759 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
FAT2 MUTATED | 1 | 4 | 4 | 0 | 2 |
FAT2 WILD-TYPE | 40 | 46 | 54 | 15 | 28 |
P value = 0.424 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
FAT2 MUTATED | 3 | 2 | 6 |
FAT2 WILD-TYPE | 53 | 58 | 62 |
P value = 0.337 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
FAT2 MUTATED | 1 | 2 | 6 | 2 | 0 |
FAT2 WILD-TYPE | 18 | 60 | 53 | 20 | 22 |
P value = 0.187 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
ZNF750 MUTATED | 0 | 2 | 0 | 5 | 2 |
ZNF750 WILD-TYPE | 6 | 70 | 31 | 39 | 36 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
ZNF750 MUTATED | 2 | 4 | 3 |
ZNF750 WILD-TYPE | 48 | 69 | 68 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
ZNF750 MUTATED | 2 | 2 | 3 |
ZNF750 WILD-TYPE | 43 | 31 | 52 |
P value = 0.319 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ZNF750 MUTATED | 3 | 1 | 3 | 0 | 0 |
ZNF750 WILD-TYPE | 24 | 39 | 29 | 18 | 16 |
P value = 0.559 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
ZNF750 MUTATED | 1 | 4 | 1 | 3 |
ZNF750 WILD-TYPE | 38 | 60 | 48 | 38 |
P value = 0.303 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ZNF750 MUTATED | 1 | 8 | 0 |
ZNF750 WILD-TYPE | 48 | 112 | 24 |
P value = 0.288 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
ZNF750 MUTATED | 2 | 1 | 6 |
ZNF750 WILD-TYPE | 59 | 54 | 72 |
P value = 0.0963 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ZNF750 MUTATED | 0 | 5 | 1 | 1 | 2 |
ZNF750 WILD-TYPE | 41 | 45 | 57 | 14 | 28 |
P value = 0.318 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
ZNF750 MUTATED | 2 | 1 | 5 |
ZNF750 WILD-TYPE | 54 | 59 | 63 |
P value = 0.351 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
ZNF750 MUTATED | 0 | 1 | 5 | 1 | 1 |
ZNF750 WILD-TYPE | 19 | 61 | 54 | 21 | 21 |
P value = 0.851 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
C12ORF43 MUTATED | 0 | 2 | 1 | 1 | 0 |
C12ORF43 WILD-TYPE | 6 | 70 | 30 | 43 | 38 |
P value = 0.677 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
C12ORF43 MUTATED | 0 | 2 | 2 |
C12ORF43 WILD-TYPE | 50 | 71 | 69 |
P value = 0.912 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
C12ORF43 MUTATED | 0 | 2 | 1 | 1 |
C12ORF43 WILD-TYPE | 39 | 62 | 48 | 40 |
P value = 0.456 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
C12ORF43 MUTATED | 0 | 4 | 0 |
C12ORF43 WILD-TYPE | 49 | 116 | 24 |
P value = 0.386 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
C12ORF43 MUTATED | 0 | 2 | 2 |
C12ORF43 WILD-TYPE | 61 | 53 | 76 |
P value = 0.206 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
C12ORF43 MUTATED | 0 | 0 | 2 | 1 | 1 |
C12ORF43 WILD-TYPE | 41 | 50 | 56 | 14 | 29 |
P value = 0.517 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
C12ORF43 MUTATED | 0 | 2 | 1 |
C12ORF43 WILD-TYPE | 56 | 58 | 67 |
P value = 0.561 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
C12ORF43 MUTATED | 0 | 2 | 0 | 1 | 0 |
C12ORF43 WILD-TYPE | 19 | 60 | 59 | 21 | 22 |
P value = 0.921 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
C3ORF70 MUTATED | 0 | 1 | 1 | 1 | 1 |
C3ORF70 WILD-TYPE | 6 | 71 | 30 | 43 | 37 |
P value = 0.0884 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
C3ORF70 MUTATED | 3 | 1 | 0 |
C3ORF70 WILD-TYPE | 47 | 72 | 71 |
P value = 0.469 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
C3ORF70 MUTATED | 0 | 1 | 2 |
C3ORF70 WILD-TYPE | 45 | 32 | 53 |
P value = 0.179 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
C3ORF70 MUTATED | 0 | 0 | 2 | 0 | 1 |
C3ORF70 WILD-TYPE | 27 | 40 | 30 | 18 | 15 |
P value = 0.656 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
C3ORF70 MUTATED | 1 | 1 | 2 | 0 |
C3ORF70 WILD-TYPE | 38 | 63 | 47 | 41 |
P value = 0.127 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
C3ORF70 MUTATED | 3 | 1 | 0 |
C3ORF70 WILD-TYPE | 46 | 119 | 24 |
P value = 0.0148 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
C3ORF70 MUTATED | 4 | 0 | 0 |
C3ORF70 WILD-TYPE | 57 | 55 | 78 |
P value = 0.298 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
C3ORF70 MUTATED | 2 | 2 | 0 | 0 | 0 |
C3ORF70 WILD-TYPE | 39 | 48 | 58 | 15 | 30 |
P value = 0.00816 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
C3ORF70 MUTATED | 4 | 0 | 0 |
C3ORF70 WILD-TYPE | 52 | 60 | 68 |
P value = 0.0086 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
C3ORF70 MUTATED | 3 | 0 | 1 | 0 | 0 |
C3ORF70 WILD-TYPE | 16 | 62 | 58 | 22 | 22 |
P value = 0.167 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
BAP1 MUTATED | 0 | 1 | 0 | 0 | 3 |
BAP1 WILD-TYPE | 6 | 71 | 31 | 44 | 35 |
P value = 0.453 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
BAP1 MUTATED | 0 | 3 | 1 |
BAP1 WILD-TYPE | 50 | 70 | 70 |
P value = 0.44 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
BAP1 MUTATED | 0 | 3 | 1 | 0 |
BAP1 WILD-TYPE | 39 | 61 | 48 | 41 |
P value = 0.456 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
BAP1 MUTATED | 0 | 4 | 0 |
BAP1 WILD-TYPE | 49 | 116 | 24 |
P value = 0.683 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
BAP1 MUTATED | 1 | 2 | 1 |
BAP1 WILD-TYPE | 60 | 53 | 77 |
P value = 0.352 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
BAP1 MUTATED | 0 | 2 | 1 | 1 | 0 |
BAP1 WILD-TYPE | 41 | 48 | 57 | 14 | 30 |
P value = 0.553 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
BAP1 MUTATED | 0 | 2 | 2 |
BAP1 WILD-TYPE | 56 | 58 | 66 |
P value = 0.629 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
BAP1 MUTATED | 0 | 1 | 3 | 0 | 0 |
BAP1 WILD-TYPE | 19 | 61 | 56 | 22 | 22 |
P value = 0.636 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
USP28 MUTATED | 0 | 2 | 0 | 2 | 0 |
USP28 WILD-TYPE | 6 | 70 | 31 | 42 | 38 |
P value = 0.251 (Fisher's exact test), Q value = 0.56
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
USP28 MUTATED | 1 | 3 | 0 |
USP28 WILD-TYPE | 49 | 70 | 71 |
P value = 0.182 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
USP28 MUTATED | 0 | 0 | 3 |
USP28 WILD-TYPE | 45 | 33 | 52 |
P value = 0.909 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
USP28 MUTATED | 0 | 2 | 1 | 0 | 0 |
USP28 WILD-TYPE | 27 | 38 | 31 | 18 | 16 |
P value = 0.603 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
USP28 MUTATED | 0 | 1 | 1 | 2 |
USP28 WILD-TYPE | 39 | 63 | 48 | 39 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
USP28 MUTATED | 1 | 3 | 0 |
USP28 WILD-TYPE | 48 | 117 | 24 |
P value = 0.467 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
USP28 MUTATED | 1 | 0 | 3 |
USP28 WILD-TYPE | 60 | 55 | 75 |
P value = 0.937 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
USP28 MUTATED | 1 | 1 | 2 | 0 | 0 |
USP28 WILD-TYPE | 40 | 49 | 56 | 15 | 30 |
P value = 0.324 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
USP28 MUTATED | 1 | 0 | 3 |
USP28 WILD-TYPE | 55 | 60 | 65 |
P value = 0.274 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
USP28 MUTATED | 1 | 0 | 2 | 1 | 0 |
USP28 WILD-TYPE | 18 | 62 | 57 | 21 | 22 |
P value = 0.147 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 6 | 72 | 31 | 44 | 38 |
IFNGR1 MUTATED | 0 | 0 | 1 | 3 | 2 |
IFNGR1 WILD-TYPE | 6 | 72 | 30 | 41 | 36 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 73 | 71 |
IFNGR1 MUTATED | 2 | 2 | 2 |
IFNGR1 WILD-TYPE | 48 | 71 | 69 |
P value = 0.469 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 33 | 55 |
IFNGR1 MUTATED | 0 | 1 | 2 |
IFNGR1 WILD-TYPE | 45 | 32 | 53 |
P value = 0.911 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
IFNGR1 MUTATED | 0 | 2 | 1 | 0 | 0 |
IFNGR1 WILD-TYPE | 27 | 38 | 31 | 18 | 16 |
P value = 0.846 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 64 | 49 | 41 |
IFNGR1 MUTATED | 2 | 2 | 1 | 1 |
IFNGR1 WILD-TYPE | 37 | 62 | 48 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
IFNGR1 MUTATED | 2 | 4 | 0 |
IFNGR1 WILD-TYPE | 47 | 116 | 24 |
P value = 0.325 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 61 | 55 | 78 |
IFNGR1 MUTATED | 3 | 0 | 3 |
IFNGR1 WILD-TYPE | 58 | 55 | 75 |
P value = 0.0333 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
IFNGR1 MUTATED | 1 | 3 | 0 | 2 | 0 |
IFNGR1 WILD-TYPE | 40 | 47 | 58 | 13 | 30 |
P value = 0.192 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 60 | 68 |
IFNGR1 MUTATED | 3 | 0 | 3 |
IFNGR1 WILD-TYPE | 53 | 60 | 65 |
P value = 0.174 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 19 | 62 | 59 | 22 | 22 |
IFNGR1 MUTATED | 1 | 0 | 4 | 0 | 1 |
IFNGR1 WILD-TYPE | 18 | 62 | 55 | 22 | 21 |
-
Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
-
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/22574677/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/22541064/CESC-TP.transferedmergedcluster.txt
-
Number of patients = 194
-
Number of significantly mutated genes = 20
-
Number of Molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.