Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	10 (28%)	26	0.070399	0.781	0.80823	1	0.64787	1	0.79114	1	0.3247	0.977	0.55328	1	0.169	0.922	0.26483	0.945	0.75724	1	0.24518	0.945
1q gain	22 (61%)	14	0.8119	1	0.1195	0.895	0.72639	1	0.81702	1	0.26948	0.945	0.35495	0.981	0.096979	0.827	0.1615	0.921	0.10229	0.827	0.18145	0.929
2p gain	5 (14%)	31	0.060329	0.729	0.59485	1	0.57946	1	0.20418	0.945	0.70176	1	0.77519	1	0.58345	1	0.64379	1	0.13194	0.895	0.88914	1
2q gain	6 (17%)	30	0.42721	0.995	0.53282	1	0.72657	1	0.71639	1	0.5862	1	0.50252	1	0.38522	0.981	0.39742	0.981	0.13117	0.895	0.85452	1
3q gain	7 (19%)	29	0.60506	1	0.02058	0.567	0.47453	1	0.27904	0.945	0.057009	0.727	0.054549	0.725	0.24166	0.945	0.49465	1	0.15548	0.895	0.67817	1
5p gain	12 (33%)	24	0.88972	1	1	1	0.88435	1	0.19888	0.942	0.84861	1	0.97596	1	0.89133	1	1	1	0.57327	1	0.87262	1
5q gain	11 (31%)	25	0.88437	1	1	1	0.77052	1	0.329	0.981	0.73178	1	0.94706	1	0.69734	1	0.9501	1	0.84491	1	0.86297	1
6p gain	8 (22%)	28	1	1	0.60768	1	0.75734	1	0.79245	1	0.60808	1	0.80123	1	0.061199	0.729	0.15469	0.895	0.02072	0.567	0.31197	0.97
6q gain	3 (8%)	33	0.40882	0.988	0.097859	0.827	0.33562	0.981	0.67651	1	0.33157	0.981	0.73278	1	0.23107	0.945	0.67562	1	0.01237	0.567	0.2628	0.945
7p gain	7 (19%)	29	0.63541	1	1	1	1	1	0.30342	0.97	0.40154	0.981	0.391	0.981	0.39011	0.981	0.56651	1	0.092769	0.827	0.16968	0.922
7q gain	6 (17%)	30	0.85999	1	0.63347	1	0.52793	1	0.68784	1	0.2225	0.945	0.53452	1	0.76601	1	0.82153	1	0.32039	0.977	0.03482	0.67
8p gain	5 (14%)	31	0.62829	1	0.40416	0.984	0.52288	1	0.6914	1	0.49082	1	0.25955	0.945	0.16878	0.922	0.66999	1	0.3771	0.981	0.57777	1
8q gain	11 (31%)	25	0.7922	1	0.28697	0.945	0.41904	0.995	0.48767	1	0.04395	0.68	0.15091	0.895	0.050229	0.703	0.077869	0.794	0.0062799	0.408	0.03166	0.67
10p gain	5 (14%)	31	0.90904	1	0.28597	0.945	0.39289	0.981	0.0421	0.68	0.16428	0.922	0.073299	0.781	0.78661	1	0.93356	1	0.48544	1	0.36259	0.981
11p gain	4 (11%)	32	0.81418	1	0.28292	0.945	0.60132	1	0.10312	0.827	0.03548	0.67	0.0056499	0.408	0.90026	1	0.74554	1	0.67183	1	0.089019	0.827
11q gain	4 (11%)	32	0.81253	1	0.28749	0.945	0.59889	1	0.10228	0.827	0.03528	0.67	0.0050699	0.408	0.89855	1	0.74819	1	0.67076	1	0.088309	0.827
12p gain	9 (25%)	27	0.092769	0.827	0.44872	1	0.04626	0.687	0.23784	0.945	0.90653	1	0.9052	1	0.58897	1	0.84348	1	1	1	0.52033	1
12q gain	8 (22%)	28	0.01698	0.567	0.46819	1	0.15087	0.895	0.53285	1	0.93805	1	0.98252	1	0.56173	1	0.82733	1	1	1	0.42228	0.995
13q gain	3 (8%)	33	0.87593	1	0.098519	0.827	NA	NA	NA	NA	0.01018	0.551	0.03814	0.67	0.60748	1	0.88647	1	0.308	0.97	0.26506	0.945
15q gain	6 (17%)	30	0.48646	1	0.86263	1	1	1	0.91417	1	0.66468	1	0.66046	1	0.14017	0.895	0.43591	1	0.15555	0.895	0.01594	0.567
16p gain	7 (19%)	29	0.21013	0.945	0.3726	0.981	0.72631	1	0.6341	1	0.51317	1	0.64033	1	0.391	0.981	0.91413	1	0.37413	0.981	0.87558	1
16q gain	5 (14%)	31	0.54086	1	1	1	0.80736	1	0.095469	0.827	0.32939	0.981	0.62346	1	1	1	0.93347	1	0.89078	1	1	1
17p gain	3 (8%)	33	0.76141	1	1	1	0.59925	1	0.24949	0.945	0.22415	0.945	0.21343	0.945	0.60789	1	0.61126	1	0.87239	1	0.31576	0.973
17q gain	7 (19%)	29	0.9332	1	1	1	0.15255	0.895	0.53191	1	0.31751	0.973	0.25804	0.945	0.93467	1	1	1	0.97257	1	0.34123	0.981
18p gain	7 (19%)	29	0.071079	0.781	0.76428	1	0.063859	0.741	0.30462	0.97	0.51367	1	0.76129	1	0.44122	1	0.88156	1	0.97242	1	0.42362	0.995
18q gain	6 (17%)	30	0.24002	0.945	0.23779	0.945	0.32396	0.977	0.67761	1	0.114	0.882	0.56755	1	0.14038	0.895	0.43554	1	0.13155	0.895	0.25593	0.945
19p gain	6 (17%)	30	1	1	0.86249	1	0.7037	1	0.7246	1	0.66373	1	0.65911	1	0.55251	1	0.43873	1	0.39475	0.981	0.92932	1
19q gain	6 (17%)	30	1	1	0.86215	1	0.70403	1	0.72378	1	0.66257	1	0.6601	1	0.55123	1	0.43492	1	0.39704	0.981	0.92979	1
20p gain	11 (31%)	25	0.73943	1	0.60272	1	0.31052	0.97	0.4824	1	0.57832	1	0.42251	0.995	0.17357	0.927	0.28118	0.945	0.47207	1	0.18612	0.931
20q gain	12 (33%)	24	0.72592	1	0.60942	1	0.14235	0.895	0.2667	0.945	0.45407	1	0.28155	0.945	0.099699	0.827	0.14764	0.895	0.63699	1	0.20524	0.945
22q gain	5 (14%)	31	0.42873	0.995	0.71128	1	0.80929	1	1	1	0.48653	1	0.28763	0.945	1	1	0.93239	1	0.48521	1	1	1
1p loss	3 (8%)	33	0.01887	0.567	1	1	0.76248	1	0.40039	0.981	0.41171	0.989	0.39564	0.981	0.60527	1	0.88806	1	0.5198	1	0.92938	1
3p loss	24 (67%)	12	0.15419	0.895	0.60919	1	0.69383	1	0.14372	0.895	0.35525	0.981	0.03902	0.67	0.55307	1	0.93251	1	0.91595	1	0.59273	1
3q loss	4 (11%)	32	0.73167	1	0.81221	1	0.60359	1	0.52073	1	0.56277	1	0.12213	0.895	0.21315	0.945	0.489	1	0.17405	0.927	0.1508	0.895
4p loss	11 (31%)	25	1	1	0.072409	0.781	0.88417	1	0.86189	1	0.20115	0.942	0.18952	0.933	0.86408	1	0.65862	1	0.61621	1	0.73097	1
4q loss	13 (36%)	23	0.19652	0.942	0.24919	0.945	0.6167	1	0.68823	1	0.22767	0.945	0.38949	0.981	0.35211	0.981	0.83797	1	0.40795	0.988	0.48953	1
5q loss	3 (8%)	33	0.7598	1	0.76482	1	0.60097	1	0.24972	0.945	0.12616	0.895	0.078149	0.794	0.606	1	0.25125	0.945	0.31167	0.97	0.48505	1
6p loss	5 (14%)	31	0.57839	1	0.02272	0.569	0.70542	1	1	1	0.83196	1	0.98196	1	0.39279	0.981	0.23997	0.945	0.058449	0.729	0.57759	1
6q loss	20 (56%)	16	0.01499	0.567	0.0049	0.408	0.088759	0.827	0.02277	0.569	0.01935	0.567	0.14612	0.895	0.37789	0.981	0.25711	0.945	0.60309	1	0.30579	0.97
7p loss	4 (11%)	32	0.39851	0.981	0.22333	0.945	NA	NA	NA	NA	0.40049	0.981	0.28257	0.945	0.39441	0.981	0.90455	1	0.17568	0.928	0.65841	1
7q loss	4 (11%)	32	1	1	0.81389	1	NA	NA	NA	NA	0.39959	0.981	0.28365	0.945	0.21255	0.945	0.27771	0.945	0.096839	0.827	0.04019	0.67
8p loss	10 (28%)	26	0.00344	0.408	0.18323	0.93	1	1	0.54698	1	0.0488	0.703	0.077929	0.794	0.11737	0.895	0.03698	0.67	0.64811	1	0.24013	0.945
8q loss	5 (14%)	31	0.54072	1	0.23367	0.945	1	1	0.72581	1	0.098279	0.827	0.20066	0.942	0.58427	1	0.02546	0.591	0.89016	1	0.061649	0.729
9p loss	18 (50%)	18	0.02521	0.591	0.32213	0.977	0.26723	0.945	0.0061399	0.408	0.51419	1	0.29434	0.957	0.097809	0.827	0.128	0.895	0.29876	0.966	0.17013	0.922
9q loss	19 (53%)	17	0.0055899	0.408	0.75945	1	0.25877	0.945	0.01133	0.566	0.1518	0.895	0.13076	0.895	0.55083	1	0.36983	0.981	0.39738	0.981	0.27591	0.945
10p loss	6 (17%)	30	0.8583	1	0.86242	1	0.20943	0.945	0.11048	0.876	0.11194	0.877	0.35598	0.981	0.55081	1	0.77478	1	0.36325	0.981	0.00153	0.408
10q loss	5 (14%)	31	0.58252	1	0.48532	1	1	1	0.67495	1	0.93349	1	0.98183	1	1	1	0.69705	1	0.89223	1	0.36389	0.981
11p loss	8 (22%)	28	0.056309	0.727	1	1	0.065999	0.753	0.4869	1	0.38957	0.981	0.53439	1	1	1	0.83972	1	0.78396	1	0.45203	1
11q loss	9 (25%)	27	0.04649	0.687	0.89476	1	0.26831	0.945	0.48675	1	0.050839	0.703	0.47228	1	0.87531	1	0.58402	1	0.97808	1	0.44286	1
12q loss	3 (8%)	33	0.76384	1	0.48279	1	NA	NA	NA	NA	0.33342	0.981	0.15354	0.895	0.86135	1	1	1	0.30823	0.97	0.56138	1
13q loss	16 (44%)	20	0.01513	0.567	0.9173	1	0.26992	0.945	0.51769	1	0.13318	0.895	0.52463	1	0.90908	1	0.48575	1	0.94031	1	0.57415	1
14q loss	13 (36%)	23	0.03195	0.67	0.31332	0.97	0.24851	0.945	0.0082799	0.489	0.12605	0.895	0.04378	0.68	1	1	0.91032	1	0.72616	1	0.37005	0.981
15q loss	5 (14%)	31	0.15314	0.895	0.71039	1	1	1	1	1	0.48547	1	0.28497	0.945	0.58226	1	0.75542	1	0.5142	1	0.63104	1
16p loss	4 (11%)	32	0.72843	1	0.81265	1	NA	NA	NA	NA	0.4012	0.981	1	1	0.89916	1	0.96591	1	0.53178	1	0.39404	0.981
16q loss	7 (19%)	29	0.18117	0.929	0.27679	0.945	0.39351	0.981	0.42819	0.995	0.18934	0.933	0.41231	0.989	0.59182	1	0.01831	0.567	0.61519	1	0.69984	1
17p loss	10 (28%)	26	0.42683	0.995	0.18603	0.931	0.85805	1	1	1	0.49003	1	0.35646	0.981	0.46237	1	0.28914	0.945	0.62047	1	0.62778	1
18p loss	6 (17%)	30	1	1	1	1	0.65309	1	0.48161	1	0.94397	1	0.60133	1	0.28491	0.945	0.56914	1	0.5366	1	0.62117	1
18q loss	8 (22%)	28	0.61254	1	0.8801	1	0.5776	1	0.84123	1	0.53736	1	0.61355	1	0.20073	0.942	0.25431	0.945	0.37854	0.981	0.34021	0.981
19p loss	4 (11%)	32	0.90206	1	0.35369	0.981	0.80806	1	1	1	0.39832	0.981	0.68451	1	0.054649	0.725	0.24454	0.945	0.02092	0.567	0.090039	0.827
19q loss	3 (8%)	33	0.65682	1	0.48235	1	NA	NA	NA	NA	0.3333	0.981	0.73119	1	0.8597	1	1	1	0.71141	1	0.70462	1
20p loss	5 (14%)	31	0.90797	1	0.70981	1	NA	NA	NA	NA	0.48542	1	0.52185	1	0.16904	0.922	0.41496	0.992	0.65647	1	0.36255	0.981
21q loss	15 (42%)	21	0.64908	1	0.70339	1	1	1	0.71393	1	0.72398	1	0.28926	0.945	0.34174	0.981	0.62835	1	0.84641	1	0.44843	1
22q loss	5 (14%)	31	0.78691	1	0.84176	1	0.70509	1	0.37589	0.981	0.28209	0.945	0.15328	0.895	0.78644	1	0.80525	1	0.65655	1	0.57803	1
xp loss	15 (42%)	21	0.03998	0.67	0.0053799	0.408	0.65009	1	0.8483	1	0.20079	0.942	0.26483	0.945	0.63624	1	0.96223	1	0.17819	0.929	0.72037	1
xq loss	15 (42%)	21	0.0396	0.67	0.00488	0.408	0.64855	1	0.84914	1	0.20134	0.942	0.26715	0.945	0.63518	1	0.96204	1	0.17987	0.929	0.71857	1