Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	6 (12%)	42	0.28314	0.924	0.68066	1	0.39104	0.95	0.27443	0.924	0.33886	0.926	0.55042	1	0.86114	1	0.31376	0.926	1	1	0.84118	1
2p gain	6 (12%)	42	0.59743	1	0.6834	1	0.34125	0.926	0.82616	1	0.90811	1	1	1	1	1	0.60579	1	0.49805	1	0.24769	0.924
2q gain	6 (12%)	42	0.59402	1	0.68192	1	0.34064	0.926	0.82368	1	0.90775	1	1	1	1	1	0.6041	1	0.49743	1	0.24914	0.924
3p gain	10 (21%)	38	0.02572	0.634	0.61879	1	0.45108	1	0.2479	0.924	0.36661	0.943	0.12737	0.849	0.2033	0.905	0.40276	0.965	0.76083	1	0.70266	1
3q gain	13 (27%)	35	0.00231	0.256	0.3406	0.926	0.23907	0.924	0.0369	0.634	0.065759	0.788	0.01298	0.582	0.22182	0.924	0.56323	1	0.87644	1	0.85855	1
5p gain	7 (15%)	41	0.27914	0.924	0.066959	0.788	0.77422	1	0.68721	1	0.04391	0.634	0.87406	1	1	1	0.63786	1	0.65978	1	0.3163	0.926
5q gain	6 (12%)	42	0.5029	1	0.25573	0.924	0.77237	1	0.68703	1	0.1039	0.821	0.66548	1	1	1	0.80006	1	0.58688	1	0.51115	1
6p gain	6 (12%)	42	0.59755	1	0.86682	1	0.8747	1	0.82596	1	0.36267	0.943	1	1	0.67188	1	0.86108	1	0.91363	1	0.90902	1
6q gain	4 (8%)	44	0.10477	0.821	0.60084	1	0.96041	1	0.76962	1	0.61862	1	0.89495	1	0.44133	1	1	1	0.78032	1	0.32815	0.926
7p gain	14 (29%)	34	0.00251	0.256	0.46455	1	0.81487	1	0.76015	1	0.13293	0.864	0.04117	0.634	0.66521	1	0.69808	1	0.43388	1	0.7347	1
7q gain	12 (25%)	36	0.0035	0.256	0.74868	1	0.82359	1	1	1	0.19849	0.905	0.067759	0.788	0.64925	1	0.91836	1	0.088499	0.793	0.47302	1
8p gain	7 (15%)	41	1	1	0.11696	0.838	0.92061	1	1	1	0.15104	0.875	0.70462	1	0.26439	0.924	0.0055199	0.319	0.37991	0.943	0.14986	0.875
8q gain	8 (17%)	40	0.87491	1	0.04103	0.634	0.77095	1	0.82406	1	0.04855	0.664	0.32354	0.926	0.1362	0.866	0.0276	0.634	0.3763	0.943	0.14846	0.875
9p gain	7 (15%)	41	1	1	0.38662	0.944	0.97534	1	0.43801	1	0.31123	0.926	0.02455	0.634	0.26369	0.924	0.63901	1	0.9116	1	0.29928	0.924
9q gain	7 (15%)	41	0.65235	1	0.38445	0.944	0.97548	1	0.4384	1	0.87359	1	0.089979	0.793	0.26556	0.924	0.29251	0.924	0.85442	1	0.29499	0.924
10p gain	4 (8%)	44	0.10746	0.821	0.89656	1	NA	NA	NA	NA	0.02196	0.634	0.19904	0.905	0.67587	1	1	1	0.77879	1	0.32607	0.926
10q gain	4 (8%)	44	0.10718	0.821	0.59974	1	0.9613	1	0.76823	1	0.18231	0.905	0.19738	0.905	0.44502	1	0.77781	1	0.081729	0.788	0.01248	0.582
11p gain	9 (19%)	39	0.46978	1	0.87182	1	0.2968	0.924	0.37811	0.943	0.20359	0.905	0.51653	1	0.19716	0.905	0.16367	0.902	0.34153	0.926	0.37741	0.943
11q gain	13 (27%)	35	0.82247	1	0.48622	1	0.10049	0.821	0.3588	0.943	0.15346	0.875	0.44257	1	0.91294	1	0.074849	0.788	0.46344	1	0.33902	0.926
12p gain	7 (15%)	41	0.27755	0.924	0.53347	1	0.87416	1	0.2994	0.924	0.76114	1	0.19868	0.905	0.36331	0.943	0.27515	0.924	0.68813	1	0.62324	1
12q gain	9 (19%)	39	0.47395	1	0.23261	0.924	1	1	0.47568	1	0.60696	1	0.30167	0.924	0.19658	0.905	0.13655	0.866	0.26226	0.924	0.14183	0.875
13q gain	5 (10%)	43	0.68732	1	0.78174	1	0.26853	0.924	1	1	0.36644	0.943	0.25676	0.924	0.03473	0.634	0.66108	1	0.19589	0.905	0.57115	1
16p gain	7 (15%)	41	0.65282	1	0.19381	0.905	0.61916	1	1	1	0.083309	0.788	0.077169	0.788	0.46824	1	0.02951	0.634	0.24337	0.924	0.04323	0.634
16q gain	7 (15%)	41	0.55762	1	0.097879	0.821	0.61789	1	1	1	0.33744	0.926	0.31815	0.926	0.46746	1	0.01454	0.582	0.24264	0.924	0.22691	0.924
17q gain	3 (6%)	45	0.7557	1	0.64283	1	0.96042	1	0.76979	1	0.16642	0.902	0.53782	1	0.76263	1	0.03555	0.634	0.78089	1	1	1
18p gain	13 (27%)	35	0.00209	0.256	0.53703	1	0.0037	0.256	0.77913	1	0.49805	1	0.31103	0.926	0.22064	0.924	0.12282	0.849	0.66363	1	0.37083	0.943
18q gain	13 (27%)	35	0.00217	0.256	0.5366	1	0.00394	0.256	0.77838	1	0.49521	1	0.31068	0.926	0.21893	0.924	0.11994	0.843	0.6648	1	0.37152	0.943
19p gain	3 (6%)	45	0.26955	0.924	1	1	NA	NA	NA	NA	0.88065	1	0.63427	1	1	1	0.69042	1	NA	NA	NA	NA
19q gain	3 (6%)	45	0.26853	0.924	1	1	NA	NA	NA	NA	0.88185	1	0.63536	1	1	1	0.69232	1	NA	NA	NA	NA
20p gain	5 (10%)	43	0.83631	1	1	1	0.62972	1	0.15488	0.875	0.072249	0.788	0.43098	1	0.59618	1	0.37823	0.943	0.89806	1	1	1
20q gain	4 (8%)	44	1	1	1	1	0.95981	1	0.11768	0.838	0.22639	0.924	0.51405	1	1	1	0.8183	1	1	1	0.51505	1
21q gain	10 (21%)	38	0.62703	1	0.057469	0.766	0.35311	0.943	0.03401	0.634	0.04519	0.635	0.26671	0.924	0.11054	0.821	0.18263	0.905	0.29591	0.924	0.43097	1
xp gain	6 (12%)	42	0.59437	1	0.68479	1	0.92131	1	0.81591	1	0.90769	1	1	1	0.33554	0.926	0.17745	0.905	0.064829	0.788	0.04204	0.634
xq gain	7 (15%)	41	0.32861	0.926	0.76157	1	0.9208	1	0.81452	1	0.55663	1	0.74686	1	1	1	0.27326	0.924	0.39919	0.961	0.085459	0.793
1p loss	3 (6%)	45	1	1	0.55606	1	0.66282	1	0.56955	1	0.70794	1	1	1	1	1	0.84662	1	NA	NA	NA	NA
3p loss	4 (8%)	44	1	1	1	1	NA	NA	NA	NA	0.29316	0.924	0.71651	1	0.10957	0.821	0.7777	1	0.46213	1	0.37885	0.943
3q loss	3 (6%)	45	0.75643	1	0.64216	1	NA	NA	NA	NA	0.069319	0.788	0.35361	0.943	0.30388	0.924	0.92054	1	NA	NA	NA	NA
4p loss	3 (6%)	45	0.27528	0.924	0.55296	1	NA	NA	NA	NA	0.12905	0.849	0.089069	0.793	0.02811	0.634	0.68734	1	NA	NA	NA	NA
4q loss	4 (8%)	44	0.10636	0.821	0.8952	1	0.66211	1	0.57043	1	0.49231	1	0.89593	1	0.44488	1	0.23543	0.924	0.89648	1	0.573	1
6q loss	7 (15%)	41	0.27799	0.924	0.24034	0.924	0.02215	0.634	1	1	0.8829	1	0.93704	1	0.59771	1	0.72692	1	0.76988	1	0.80384	1
8p loss	8 (17%)	40	0.22407	0.924	1	1	0.14798	0.875	0.04321	0.634	0.51728	1	0.809	1	0.89511	1	0.02585	0.634	1	1	0.65946	1
8q loss	4 (8%)	44	0.10604	0.821	0.73823	1	0.41436	0.988	0.076589	0.788	0.784	1	0.58167	1	0.67462	1	0.15792	0.883	NA	NA	NA	NA
13q loss	3 (6%)	45	0.75654	1	0.46809	1	NA	NA	NA	NA	0.067879	0.788	0.35284	0.943	1	1	0.84813	1	NA	NA	NA	NA
15q loss	7 (15%)	41	0.02642	0.634	0.12868	0.849	0.66109	1	0.57172	1	0.02249	0.634	0.22205	0.924	0.11589	0.838	0.36726	0.943	0.3224	0.926	0.21169	0.924
16q loss	4 (8%)	44	0.10824	0.821	0.24298	0.924	0.17161	0.902	0.56656	1	0.49157	1	0.89542	1	0.20369	0.905	0.12866	0.849	0.17789	0.905	0.082469	0.788
17p loss	9 (19%)	39	0.28497	0.924	0.66391	1	1	1	1	1	0.082519	0.788	0.70292	1	0.73743	1	0.50055	1	0.39864	0.961	0.17401	0.905
17q loss	4 (8%)	44	1	1	0.38076	0.943	NA	NA	NA	NA	0.1835	0.905	0.64669	1	0.4455	1	0.49041	1	0.081869	0.788	0.0376	0.634
18p loss	5 (10%)	43	0.69136	1	0.42827	1	0.96043	1	0.2742	0.924	0.4617	1	0.03533	0.634	0.85926	1	0.24938	0.924	0.20861	0.919	0.38589	0.944
18q loss	5 (10%)	43	0.83735	1	0.42576	1	NA	NA	NA	NA	0.14519	0.875	0.16822	0.902	1	1	0.72768	1	0.19549	0.905	0.1525	0.875
22q loss	3 (6%)	45	0.27079	0.924	0.74212	1	0.29519	0.924	0.76751	1	0.88108	1	1	1	1	1	0.44048	1	NA	NA	NA	NA
xp loss	5 (10%)	43	0.54882	1	0.34206	0.926	0.17166	0.902	0.57177	1	0.29659	0.924	0.83926	1	0.59968	1	0.01352	0.582	0.66171	1	0.25533	0.924
xq loss	4 (8%)	44	0.79387	1	0.14562	0.875	0.17088	0.902	0.56966	1	0.079559	0.788	0.45142	1	0.30388	0.924	0.00223	0.256	0.31219	0.926	0.04023	0.634