This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 577 patients, 270 significant findings detected with P value < 0.05 and Q value < 0.25.
-
1p gain cnv correlated to 'CN_CNMF'.
-
1q gain cnv correlated to 'CN_CNMF'.
-
3p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
3q gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
6p gain cnv correlated to 'MRNA_CNMF' and 'METHLYATION_CNMF'.
-
6q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
7p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
7q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
-
8p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', and 'CN_CNMF'.
-
8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
9p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
10p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
11q gain cnv correlated to 'METHLYATION_CNMF'.
-
12p gain cnv correlated to 'MRNASEQ_CNMF'.
-
12q gain cnv correlated to 'MIR_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
-
14q gain cnv correlated to 'MIR_CNMF'.
-
15q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
-
16p gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
16q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
-
17p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
-
17q gain cnv correlated to 'MRNA_CNMF', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
18p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
-
18q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
-
19p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
19q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
-
20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
21q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
-
22q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
xq gain cnv correlated to 'MRNASEQ_CNMF'.
-
1p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
2p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
2q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
3p loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
-
3q loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
-
4p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
4q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
5p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
6p loss cnv correlated to 'CN_CNMF'.
-
6q loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
-
7p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
-
8q loss cnv correlated to 'MIR_CNMF'.
-
9p loss cnv correlated to 'MRNA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
10p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
-
10q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
-
11p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
11q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
12p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
12q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
13q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
-
15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
16p loss cnv correlated to 'CN_CNMF'.
-
16q loss cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
17p loss cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
-
17q loss cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
18p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
-
18q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
-
19p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
19q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
20p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
20q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
21q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
-
22q loss cnv correlated to 'CN_CNMF'.
-
xp loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
-
xq loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 468 (81%) | 109 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.00024 (0.00246) |
1e-05 (0.000182) |
1e-05 (0.000182) |
2e-05 (0.000298) |
0.0084 (0.0425) |
0.00055 (0.00496) |
0.00942 (0.0454) |
8e-05 (0.000937) |
15q loss | 104 (18%) | 473 |
6e-05 (0.000745) |
1e-05 (0.000182) |
0.00182 (0.0128) |
0.00205 (0.014) |
1e-05 (0.000182) |
0.022 (0.0889) |
0.175 (0.353) |
0.019 (0.0785) |
0.00393 (0.0237) |
0.0231 (0.0918) |
7q gain | 475 (82%) | 102 |
2e-05 (0.000298) |
1e-05 (0.000182) |
0.00208 (0.014) |
0.0001 (0.00114) |
1e-05 (0.000182) |
0.00043 (0.0041) |
0.343 (0.549) |
0.0112 (0.0504) |
0.0661 (0.183) |
0.00157 (0.0115) |
10p loss | 480 (83%) | 97 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.0151 (0.0648) |
8e-05 (0.000937) |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.273 (0.468) |
0.00137 (0.0107) |
0.221 (0.405) |
0.0126 (0.0553) |
10q loss | 492 (85%) | 85 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.00763 (0.0399) |
0.00036 (0.00356) |
1e-05 (0.000182) |
8e-05 (0.000937) |
0.439 (0.643) |
0.00073 (0.00617) |
0.258 (0.453) |
0.021 (0.0854) |
19q gain | 198 (34%) | 379 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.277 (0.474) |
0.00471 (0.0266) |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.208 (0.392) |
0.00022 (0.00228) |
0.0448 (0.141) |
0.342 (0.549) |
20p gain | 222 (38%) | 355 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.00352 (0.0215) |
2e-05 (0.000298) |
1e-05 (0.000182) |
0.00016 (0.0017) |
0.352 (0.559) |
0.00066 (0.0057) |
0.664 (0.818) |
0.12 (0.275) |
20q gain | 220 (38%) | 357 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.00174 (0.0123) |
2e-05 (0.000298) |
1e-05 (0.000182) |
4e-05 (0.000521) |
0.263 (0.458) |
0.00039 (0.00381) |
0.664 (0.818) |
0.121 (0.278) |
17p gain | 49 (8%) | 528 |
0.00044 (0.00415) |
0.0275 (0.101) |
0.0505 (0.152) |
0.0274 (0.101) |
0.0291 (0.105) |
0.0245 (0.0958) |
0.0247 (0.0959) |
0.204 (0.387) |
0.218 (0.403) |
0.236 (0.422) |
19p gain | 226 (39%) | 351 |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.122 (0.278) |
0.00025 (0.00253) |
1e-05 (0.000182) |
1e-05 (0.000182) |
0.203 (0.386) |
2e-05 (0.000298) |
0.146 (0.317) |
0.656 (0.814) |
21q gain | 64 (11%) | 513 |
0.00301 (0.0187) |
0.00751 (0.0395) |
0.0174 (0.0733) |
0.00378 (0.023) |
0.06 (0.172) |
0.00571 (0.0312) |
0.117 (0.273) |
0.758 (0.883) |
0.0193 (0.079) |
0.329 (0.535) |
5q loss | 45 (8%) | 532 |
3e-05 (0.000424) |
1e-05 (0.000182) |
0.00103 (0.00862) |
0.147 (0.317) |
0.0044 (0.0252) |
4e-05 (0.000521) |
0.669 (0.818) |
0.0848 (0.217) |
0.0981 (0.24) |
0.0428 (0.135) |
11p loss | 98 (17%) | 479 |
2e-05 (0.000298) |
1e-05 (0.000182) |
0.898 (0.97) |
0.0177 (0.0739) |
1e-05 (0.000182) |
0.00153 (0.0114) |
0.816 (0.913) |
0.0322 (0.11) |
0.0576 (0.167) |
0.0875 (0.22) |
20p loss | 19 (3%) | 558 |
0.00035 (0.0035) |
2e-05 (0.000298) |
0.0483 (0.149) |
0.093 (0.233) |
0.00817 (0.0421) |
0.475 (0.674) |
0.0756 (0.201) |
0.452 (0.653) |
0.0105 (0.0481) |
0.00202 (0.0139) |
3p gain | 58 (10%) | 519 |
0.00153 (0.0114) |
0.0293 (0.105) |
0.376 (0.581) |
0.027 (0.1) |
0.0169 (0.0719) |
0.0245 (0.0958) |
0.988 (1.00) |
0.705 (0.846) |
0.813 (0.911) |
0.255 (0.45) |
8q gain | 59 (10%) | 518 |
1e-05 (0.000182) |
3e-05 (0.000424) |
0.0396 (0.127) |
0.456 (0.656) |
0.00137 (0.0107) |
0.00942 (0.0454) |
0.281 (0.476) |
0.159 (0.332) |
0.143 (0.312) |
0.514 (0.704) |
10p gain | 13 (2%) | 564 |
0.00136 (0.0107) |
0.00016 (0.0017) |
0.16 (0.332) |
0.0597 (0.172) |
0.00136 (0.0107) |
0.00475 (0.0267) |
0.406 (0.612) |
0.00433 (0.025) |
||
16q gain | 37 (6%) | 540 |
0.028 (0.102) |
0.00534 (0.0296) |
0.446 (0.65) |
0.0663 (0.183) |
0.0264 (0.0992) |
0.0287 (0.104) |
0.023 (0.0918) |
0.886 (0.967) |
0.474 (0.673) |
0.735 (0.865) |
18p gain | 58 (10%) | 519 |
1e-05 (0.000182) |
0.00053 (0.00483) |
0.434 (0.639) |
0.367 (0.571) |
1e-05 (0.000182) |
0.00893 (0.044) |
0.441 (0.645) |
0.39 (0.596) |
0.0276 (0.101) |
0.0963 (0.237) |
18q gain | 58 (10%) | 519 |
1e-05 (0.000182) |
0.0006 (0.00535) |
0.382 (0.588) |
0.433 (0.639) |
2e-05 (0.000298) |
0.0106 (0.0482) |
0.364 (0.571) |
0.607 (0.773) |
0.0265 (0.0993) |
0.114 (0.268) |
22q gain | 34 (6%) | 543 |
3e-05 (0.000424) |
0.00305 (0.0188) |
0.455 (0.656) |
0.217 (0.403) |
0.00407 (0.0242) |
0.0452 (0.142) |
0.268 (0.463) |
0.0296 (0.105) |
0.287 (0.483) |
0.193 (0.376) |
4q loss | 55 (10%) | 522 |
0.00217 (0.0145) |
0.00146 (0.0112) |
0.0248 (0.0961) |
0.141 (0.309) |
0.00507 (0.0283) |
0.00161 (0.0116) |
0.763 (0.888) |
0.392 (0.596) |
0.39 (0.596) |
1 (1.00) |
5p loss | 43 (7%) | 534 |
2e-05 (0.000298) |
2e-05 (0.000298) |
0.00416 (0.0244) |
0.0959 (0.237) |
0.00649 (0.035) |
0.00153 (0.0114) |
0.8 (0.905) |
0.212 (0.397) |
0.183 (0.363) |
0.054 (0.161) |
13q loss | 185 (32%) | 392 |
6e-05 (0.000745) |
0.00243 (0.0157) |
0.599 (0.768) |
0.62 (0.786) |
1e-05 (0.000182) |
0.00461 (0.0263) |
0.521 (0.711) |
0.0266 (0.0993) |
0.125 (0.28) |
0.488 (0.683) |
19p loss | 26 (5%) | 551 |
0.00167 (0.0119) |
0.00291 (0.0182) |
0.0143 (0.062) |
0.313 (0.512) |
0.178 (0.356) |
0.00061 (0.00538) |
0.0685 (0.187) |
0.0363 (0.12) |
0.839 (0.927) |
0.804 (0.907) |
20q loss | 17 (3%) | 560 |
0.00245 (0.0157) |
0.0001 (0.00114) |
0.474 (0.673) |
0.265 (0.459) |
0.0389 (0.126) |
0.472 (0.673) |
0.573 (0.752) |
0.452 (0.653) |
0.0391 (0.126) |
0.0124 (0.055) |
21q loss | 42 (7%) | 535 |
0.0228 (0.0918) |
0.0013 (0.0106) |
0.0833 (0.214) |
0.262 (0.458) |
0.0319 (0.11) |
0.0324 (0.11) |
0.45 (0.653) |
0.0264 (0.0992) |
0.907 (0.976) |
1 (1.00) |
xp loss | 116 (20%) | 461 |
0.00408 (0.0242) |
0.0105 (0.0481) |
0.0729 (0.195) |
0.221 (0.405) |
4e-05 (0.000521) |
0.00021 (0.00221) |
0.033 (0.111) |
0.515 (0.704) |
0.287 (0.483) |
0.648 (0.809) |
6q gain | 23 (4%) | 554 |
0.00784 (0.0407) |
0.0368 (0.121) |
0.755 (0.882) |
0.105 (0.252) |
0.00549 (0.0302) |
0.00063 (0.0055) |
0.682 (0.831) |
0.671 (0.82) |
0.813 (0.911) |
1 (1.00) |
8p gain | 52 (9%) | 525 |
1e-05 (0.000182) |
0.00053 (0.00483) |
0.0375 (0.123) |
0.557 (0.737) |
0.00129 (0.0106) |
0.0543 (0.161) |
0.278 (0.475) |
0.159 (0.332) |
0.19 (0.373) |
0.677 (0.826) |
17q gain | 61 (11%) | 516 |
0.00159 (0.0115) |
0.0639 (0.18) |
0.0495 (0.151) |
0.0514 (0.154) |
0.0437 (0.138) |
0.0104 (0.0481) |
0.0586 (0.169) |
0.0609 (0.174) |
0.692 (0.84) |
0.479 (0.679) |
4p loss | 56 (10%) | 521 |
0.0559 (0.165) |
0.00188 (0.0131) |
0.0327 (0.111) |
0.176 (0.354) |
0.00913 (0.0446) |
0.00159 (0.0115) |
0.769 (0.893) |
0.358 (0.567) |
0.819 (0.914) |
1 (1.00) |
7p loss | 8 (1%) | 569 |
0.0235 (0.093) |
0.034 (0.114) |
0.548 (0.728) |
0.0414 (0.132) |
0.0302 (0.106) |
|||||
12p loss | 59 (10%) | 518 |
0.00975 (0.0462) |
0.0368 (0.121) |
0.546 (0.728) |
0.725 (0.862) |
0.00241 (0.0157) |
0.0395 (0.127) |
0.122 (0.278) |
0.171 (0.348) |
0.728 (0.863) |
0.579 (0.756) |
14q loss | 147 (25%) | 430 |
1e-05 (0.000182) |
0.00011 (0.00124) |
0.534 (0.717) |
0.481 (0.68) |
1e-05 (0.000182) |
0.0568 (0.166) |
0.189 (0.373) |
0.0296 (0.105) |
0.147 (0.317) |
0.602 (0.769) |
17q loss | 41 (7%) | 536 |
0.00881 (0.0438) |
0.0614 (0.174) |
0.122 (0.278) |
0.047 (0.145) |
4e-05 (0.000521) |
0.0255 (0.0968) |
0.154 (0.326) |
1 (1.00) |
0.157 (0.33) |
0.107 (0.257) |
18p loss | 71 (12%) | 506 |
0.0102 (0.0473) |
0.0316 (0.109) |
0.305 (0.504) |
0.218 (0.403) |
0.00042 (0.00405) |
0.173 (0.351) |
0.467 (0.668) |
0.0428 (0.135) |
0.205 (0.387) |
0.598 (0.768) |
18q loss | 62 (11%) | 515 |
0.034 (0.114) |
0.00707 (0.0379) |
0.529 (0.715) |
0.239 (0.426) |
0.00233 (0.0153) |
0.607 (0.773) |
0.704 (0.846) |
0.00272 (0.0172) |
0.699 (0.846) |
0.119 (0.274) |
19q loss | 35 (6%) | 542 |
0.00721 (0.0384) |
0.00953 (0.0457) |
0.262 (0.458) |
0.151 (0.321) |
0.0321 (0.11) |
0.0013 (0.0106) |
0.201 (0.384) |
0.191 (0.373) |
0.78 (0.899) |
0.483 (0.68) |
xq loss | 106 (18%) | 471 |
0.0252 (0.0965) |
0.0236 (0.093) |
0.179 (0.357) |
0.172 (0.349) |
4e-05 (0.000521) |
0.00874 (0.0438) |
0.0569 (0.166) |
0.827 (0.918) |
0.451 (0.653) |
0.961 (1.00) |
3q gain | 64 (11%) | 513 |
0.00067 (0.00572) |
0.0613 (0.174) |
0.505 (0.699) |
0.0642 (0.18) |
0.00879 (0.0438) |
0.0346 (0.115) |
0.809 (0.909) |
1 (1.00) |
0.589 (0.763) |
0.151 (0.321) |
9p gain | 47 (8%) | 530 |
0.0107 (0.0487) |
0.0308 (0.108) |
0.84 (0.927) |
0.435 (0.639) |
0.0122 (0.0545) |
0.369 (0.572) |
0.321 (0.523) |
0.704 (0.846) |
0.206 (0.39) |
0.112 (0.264) |
16p gain | 38 (7%) | 539 |
0.0148 (0.064) |
0.0664 (0.183) |
0.489 (0.683) |
0.273 (0.468) |
0.0041 (0.0242) |
0.0377 (0.123) |
0.193 (0.375) |
0.661 (0.818) |
1 (1.00) |
1 (1.00) |
2p loss | 32 (6%) | 545 |
0.00138 (0.0107) |
0.0276 (0.101) |
0.483 (0.68) |
0.771 (0.894) |
0.011 (0.0497) |
0.28 (0.476) |
0.115 (0.269) |
0.939 (0.997) |
0.237 (0.423) |
0.226 (0.411) |
2q loss | 33 (6%) | 544 |
0.00227 (0.015) |
0.0138 (0.0604) |
0.343 (0.549) |
0.665 (0.818) |
0.00896 (0.044) |
0.269 (0.464) |
0.0675 (0.186) |
0.871 (0.956) |
0.105 (0.253) |
0.0731 (0.195) |
9p loss | 203 (35%) | 374 |
0.00752 (0.0395) |
0.124 (0.279) |
0.629 (0.79) |
0.489 (0.683) |
0.601 (0.769) |
0.907 (0.976) |
0.101 (0.245) |
0.0702 (0.19) |
0.00968 (0.0461) |
0.00839 (0.0425) |
11q loss | 92 (16%) | 485 |
5e-05 (0.000641) |
0.00014 (0.00153) |
0.928 (0.991) |
0.07 (0.19) |
1e-05 (0.000182) |
0.227 (0.413) |
0.332 (0.539) |
0.151 (0.321) |
0.14 (0.308) |
0.533 (0.717) |
12q loss | 57 (10%) | 520 |
0.00829 (0.0425) |
0.0299 (0.106) |
0.569 (0.749) |
0.418 (0.624) |
7e-05 (0.000857) |
0.05 (0.151) |
0.0763 (0.201) |
0.533 (0.717) |
0.729 (0.863) |
0.578 (0.755) |
6p gain | 24 (4%) | 553 |
0.0315 (0.109) |
0.118 (0.273) |
0.891 (0.967) |
0.16 (0.332) |
0.0535 (0.16) |
0.00576 (0.0313) |
0.652 (0.812) |
0.889 (0.967) |
1 (1.00) |
1 (1.00) |
12q gain | 49 (8%) | 528 |
0.591 (0.764) |
0.955 (1.00) |
0.403 (0.609) |
0.01 (0.0469) |
0.299 (0.498) |
0.779 (0.899) |
0.213 (0.399) |
0.527 (0.715) |
0.0253 (0.0965) |
0.123 (0.278) |
15q gain | 25 (4%) | 552 |
0.0819 (0.213) |
0.0973 (0.238) |
0.772 (0.895) |
0.0764 (0.201) |
0.0462 (0.144) |
0.838 (0.927) |
0.0684 (0.187) |
0.802 (0.906) |
0.039 (0.126) |
0.387 (0.594) |
1p loss | 16 (3%) | 561 |
0.756 (0.882) |
0.828 (0.919) |
0.913 (0.98) |
0.196 (0.378) |
0.0498 (0.151) |
0.73 (0.864) |
0.346 (0.55) |
0.265 (0.459) |
0.101 (0.245) |
0.0179 (0.0742) |
3p loss | 41 (7%) | 536 |
0.932 (0.994) |
0.916 (0.98) |
0.58 (0.756) |
0.0814 (0.212) |
0.00208 (0.014) |
0.939 (0.997) |
0.0169 (0.0719) |
0.654 (0.814) |
0.435 (0.639) |
0.167 (0.341) |
3q loss | 36 (6%) | 541 |
0.1 (0.244) |
0.279 (0.475) |
0.5 (0.693) |
0.394 (0.597) |
0.00051 (0.00475) |
0.624 (0.789) |
0.0125 (0.055) |
0.0948 (0.235) |
0.497 (0.691) |
0.0664 (0.183) |
6q loss | 126 (22%) | 451 |
0.947 (1.00) |
0.613 (0.779) |
0.294 (0.493) |
0.98 (1.00) |
0.0171 (0.0721) |
0.726 (0.862) |
0.0484 (0.149) |
0.334 (0.54) |
0.367 (0.571) |
0.295 (0.494) |
16q loss | 83 (14%) | 494 |
0.025 (0.0962) |
0.427 (0.634) |
0.364 (0.571) |
0.895 (0.97) |
0.00998 (0.0469) |
0.72 (0.858) |
0.228 (0.413) |
0.2 (0.384) |
0.712 (0.851) |
0.597 (0.768) |
17p loss | 65 (11%) | 512 |
0.0969 (0.238) |
0.0205 (0.0838) |
0.305 (0.504) |
0.582 (0.757) |
1e-05 (0.000182) |
0.148 (0.317) |
0.533 (0.717) |
0.21 (0.394) |
0.299 (0.498) |
0.704 (0.846) |
1p gain | 82 (14%) | 495 |
0.547 (0.728) |
0.131 (0.29) |
0.428 (0.634) |
0.248 (0.441) |
1e-05 (0.000182) |
0.794 (0.902) |
0.377 (0.581) |
0.522 (0.711) |
0.232 (0.417) |
0.273 (0.468) |
1q gain | 89 (15%) | 488 |
0.0935 (0.233) |
0.0888 (0.223) |
0.108 (0.258) |
0.627 (0.79) |
1e-05 (0.000182) |
0.192 (0.375) |
0.0867 (0.219) |
0.531 (0.717) |
0.625 (0.789) |
0.505 (0.699) |
11q gain | 15 (3%) | 562 |
0.148 (0.317) |
0.0636 (0.179) |
0.524 (0.712) |
0.244 (0.434) |
0.306 (0.504) |
0.00253 (0.0161) |
0.705 (0.846) |
0.884 (0.967) |
1 (1.00) |
1 (1.00) |
12p gain | 60 (10%) | 517 |
0.785 (0.9) |
0.793 (0.902) |
0.685 (0.834) |
0.165 (0.339) |
0.0949 (0.235) |
1 (1.00) |
0.255 (0.45) |
0.577 (0.755) |
0.00433 (0.025) |
0.078 (0.204) |
14q gain | 22 (4%) | 555 |
0.393 (0.596) |
0.782 (0.9) |
0.0177 (0.0739) |
0.806 (0.908) |
0.752 (0.882) |
0.915 (0.98) |
0.407 (0.612) |
0.11 (0.262) |
0.363 (0.571) |
0.326 (0.531) |
xq gain | 17 (3%) | 560 |
0.297 (0.496) |
0.967 (1.00) |
0.985 (1.00) |
0.514 (0.704) |
0.732 (0.865) |
0.584 (0.758) |
0.508 (0.702) |
1 (1.00) |
0.0469 (0.145) |
0.259 (0.454) |
6p loss | 87 (15%) | 490 |
0.559 (0.74) |
0.369 (0.572) |
0.511 (0.704) |
0.778 (0.899) |
0.00013 (0.00144) |
0.84 (0.927) |
0.111 (0.262) |
0.0691 (0.188) |
0.755 (0.882) |
0.596 (0.768) |
8q loss | 42 (7%) | 535 |
0.341 (0.548) |
0.154 (0.325) |
0.0494 (0.151) |
0.808 (0.909) |
0.226 (0.411) |
0.597 (0.768) |
0.458 (0.657) |
1 (1.00) |
0.458 (0.657) |
0.144 (0.314) |
16p loss | 63 (11%) | 514 |
0.524 (0.712) |
0.851 (0.937) |
0.56 (0.74) |
0.735 (0.865) |
0.0306 (0.107) |
0.073 (0.195) |
0.719 (0.858) |
0.795 (0.902) |
0.564 (0.744) |
0.646 (0.809) |
22q loss | 181 (31%) | 396 |
0.582 (0.757) |
0.669 (0.818) |
0.47 (0.671) |
0.888 (0.967) |
1e-05 (0.000182) |
0.0865 (0.219) |
0.423 (0.631) |
0.163 (0.337) |
0.2 (0.384) |
0.156 (0.329) |
2p gain | 37 (6%) | 540 |
0.602 (0.769) |
0.735 (0.865) |
0.546 (0.728) |
0.223 (0.407) |
0.425 (0.633) |
0.31 (0.508) |
0.796 (0.902) |
0.139 (0.307) |
0.924 (0.988) |
0.537 (0.72) |
2q gain | 35 (6%) | 542 |
0.794 (0.902) |
0.91 (0.978) |
0.12 (0.275) |
0.201 (0.384) |
0.428 (0.634) |
0.449 (0.653) |
0.883 (0.967) |
0.37 (0.572) |
0.701 (0.846) |
0.177 (0.355) |
4p gain | 35 (6%) | 542 |
0.19 (0.373) |
0.754 (0.882) |
0.257 (0.452) |
0.482 (0.68) |
0.217 (0.403) |
0.411 (0.616) |
0.491 (0.685) |
0.549 (0.728) |
0.617 (0.783) |
0.792 (0.902) |
4q gain | 34 (6%) | 543 |
0.225 (0.411) |
0.194 (0.376) |
0.161 (0.333) |
0.656 (0.814) |
0.186 (0.367) |
0.32 (0.523) |
0.392 (0.596) |
0.701 (0.846) |
0.366 (0.571) |
0.661 (0.818) |
5p gain | 49 (8%) | 528 |
0.124 (0.279) |
0.157 (0.33) |
0.218 (0.403) |
0.345 (0.55) |
0.0867 (0.219) |
0.115 (0.269) |
0.056 (0.165) |
0.359 (0.567) |
0.14 (0.308) |
0.229 (0.414) |
5q gain | 41 (7%) | 536 |
0.13 (0.288) |
0.23 (0.414) |
0.165 (0.339) |
0.0543 (0.161) |
0.302 (0.501) |
0.0569 (0.166) |
0.0839 (0.215) |
0.339 (0.546) |
0.202 (0.385) |
0.403 (0.609) |
9q gain | 70 (12%) | 507 |
0.165 (0.339) |
0.0779 (0.204) |
0.666 (0.818) |
0.123 (0.278) |
0.061 (0.174) |
0.11 (0.261) |
0.513 (0.704) |
0.365 (0.571) |
0.412 (0.616) |
0.0786 (0.205) |
10q gain | 3 (1%) | 574 |
0.789 (0.902) |
1 (1.00) |
0.0733 (0.195) |
0.795 (0.902) |
1 (1.00) |
0.488 (0.683) |
||||
11p gain | 18 (3%) | 559 |
0.96 (1.00) |
0.9 (0.971) |
0.665 (0.818) |
0.898 (0.97) |
0.642 (0.805) |
0.346 (0.55) |
0.407 (0.612) |
0.886 (0.967) |
0.687 (0.835) |
1 (1.00) |
13q gain | 10 (2%) | 567 |
0.0712 (0.192) |
0.496 (0.69) |
0.22 (0.405) |
0.824 (0.917) |
0.118 (0.274) |
0.936 (0.997) |
0.148 (0.317) |
0.824 (0.917) |
0.866 (0.952) |
1 (1.00) |
xp gain | 15 (3%) | 562 |
0.195 (0.376) |
1 (1.00) |
0.818 (0.914) |
0.185 (0.366) |
0.89 (0.967) |
0.632 (0.793) |
1 (1.00) |
0.626 (0.79) |
0.0859 (0.219) |
0.433 (0.639) |
1q loss | 15 (3%) | 562 |
0.784 (0.9) |
0.978 (1.00) |
0.795 (0.902) |
0.361 (0.569) |
0.254 (0.45) |
0.849 (0.935) |
0.339 (0.546) |
0.288 (0.484) |
0.512 (0.704) |
0.0827 (0.214) |
7q loss | 6 (1%) | 571 |
0.0832 (0.214) |
0.3 (0.499) |
0.895 (0.97) |
0.126 (0.281) |
0.105 (0.253) |
|||||
8p loss | 58 (10%) | 519 |
0.285 (0.483) |
0.446 (0.65) |
0.217 (0.403) |
0.782 (0.9) |
0.308 (0.507) |
0.939 (0.997) |
0.737 (0.865) |
1 (1.00) |
0.571 (0.75) |
0.392 (0.596) |
9q loss | 94 (16%) | 483 |
0.305 (0.504) |
0.13 (0.288) |
0.175 (0.353) |
0.175 (0.353) |
0.234 (0.42) |
0.709 (0.849) |
0.147 (0.317) |
0.547 (0.728) |
0.647 (0.809) |
0.179 (0.357) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
1P GAIN MUTATED | 35 | 42 | 5 |
1P GAIN WILD-TYPE | 220 | 155 | 120 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
1Q GAIN MUTATED | 38 | 47 | 4 |
1Q GAIN WILD-TYPE | 217 | 150 | 121 |
P value = 0.00153 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
3P GAIN MUTATED | 16 | 18 | 5 | 15 |
3P GAIN WILD-TYPE | 142 | 78 | 132 | 102 |
P value = 0.0293 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
3P GAIN MUTATED | 13 | 18 | 5 | 18 |
3P GAIN WILD-TYPE | 135 | 84 | 95 | 140 |
P value = 0.027 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
3P GAIN MUTATED | 35 | 5 | 15 |
3P GAIN WILD-TYPE | 258 | 119 | 114 |
P value = 0.0169 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
3P GAIN MUTATED | 33 | 20 | 5 |
3P GAIN WILD-TYPE | 222 | 177 | 120 |
P value = 0.0245 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
3P GAIN MUTATED | 6 | 0 | 7 | 13 |
3P GAIN WILD-TYPE | 64 | 42 | 74 | 69 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
3Q GAIN MUTATED | 18 | 21 | 6 | 15 |
3Q GAIN WILD-TYPE | 140 | 75 | 131 | 102 |
P value = 0.00879 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
3Q GAIN MUTATED | 35 | 24 | 5 |
3Q GAIN WILD-TYPE | 220 | 173 | 120 |
P value = 0.0346 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
3Q GAIN MUTATED | 5 | 1 | 9 | 15 |
3Q GAIN WILD-TYPE | 65 | 41 | 72 | 67 |
P value = 0.0315 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
6P GAIN MUTATED | 5 | 9 | 2 | 4 |
6P GAIN WILD-TYPE | 153 | 87 | 135 | 113 |
P value = 0.00576 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
6P GAIN MUTATED | 0 | 1 | 1 | 8 |
6P GAIN WILD-TYPE | 70 | 41 | 80 | 74 |
P value = 0.00784 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
6Q GAIN MUTATED | 4 | 10 | 2 | 4 |
6Q GAIN WILD-TYPE | 154 | 86 | 135 | 113 |
P value = 0.0368 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
6Q GAIN MUTATED | 5 | 7 | 0 | 8 |
6Q GAIN WILD-TYPE | 143 | 95 | 100 | 150 |
P value = 0.00549 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
6Q GAIN MUTATED | 16 | 7 | 0 |
6Q GAIN WILD-TYPE | 239 | 190 | 125 |
P value = 0.00063 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
6Q GAIN MUTATED | 0 | 0 | 1 | 9 |
6Q GAIN WILD-TYPE | 70 | 42 | 80 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
7P GAIN MUTATED | 146 | 65 | 115 | 84 |
7P GAIN WILD-TYPE | 12 | 31 | 22 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P GAIN MUTATED | 132 | 55 | 85 | 138 |
7P GAIN WILD-TYPE | 16 | 47 | 15 | 20 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
7P GAIN MUTATED | 128 | 142 | 64 | 110 |
7P GAIN WILD-TYPE | 15 | 45 | 26 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P GAIN MUTATED | 214 | 113 | 117 |
7P GAIN WILD-TYPE | 79 | 11 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
7P GAIN MUTATED | 180 | 183 | 105 |
7P GAIN WILD-TYPE | 75 | 14 | 20 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
7P GAIN MUTATED | 65 | 36 | 70 | 50 |
7P GAIN WILD-TYPE | 5 | 6 | 11 | 32 |
P value = 0.0084 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
7P GAIN MUTATED | 42 | 47 | 29 | 26 | 37 |
7P GAIN WILD-TYPE | 2 | 10 | 15 | 4 | 8 |
P value = 0.00055 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
7P GAIN MUTATED | 81 | 47 | 53 |
7P GAIN WILD-TYPE | 9 | 23 | 7 |
P value = 0.00942 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
7P GAIN MUTATED | 31 | 62 | 27 |
7P GAIN WILD-TYPE | 14 | 6 | 7 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7P GAIN MUTATED | 16 | 84 | 20 |
7P GAIN WILD-TYPE | 14 | 8 | 5 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
7Q GAIN MUTATED | 145 | 64 | 116 | 89 |
7Q GAIN WILD-TYPE | 13 | 32 | 21 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7Q GAIN MUTATED | 130 | 61 | 85 | 138 |
7Q GAIN WILD-TYPE | 18 | 41 | 15 | 20 |
P value = 0.00208 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
7Q GAIN MUTATED | 129 | 142 | 69 | 108 |
7Q GAIN WILD-TYPE | 14 | 45 | 21 | 18 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7Q GAIN MUTATED | 221 | 112 | 115 |
7Q GAIN WILD-TYPE | 72 | 12 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
7Q GAIN MUTATED | 185 | 184 | 106 |
7Q GAIN WILD-TYPE | 70 | 13 | 19 |
P value = 0.00043 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
7Q GAIN MUTATED | 64 | 37 | 68 | 54 |
7Q GAIN WILD-TYPE | 6 | 5 | 13 | 28 |
P value = 0.0112 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
7Q GAIN MUTATED | 80 | 51 | 54 |
7Q GAIN WILD-TYPE | 10 | 19 | 6 |
P value = 0.00157 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7Q GAIN MUTATED | 19 | 84 | 21 |
7Q GAIN WILD-TYPE | 11 | 8 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
8P GAIN MUTATED | 7 | 19 | 5 | 17 |
8P GAIN WILD-TYPE | 151 | 77 | 132 | 100 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8P GAIN MUTATED | 10 | 21 | 4 | 13 |
8P GAIN WILD-TYPE | 138 | 81 | 96 | 145 |
P value = 0.0375 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
8P GAIN MUTATED | 7 | 21 | 13 | 8 |
8P GAIN WILD-TYPE | 136 | 166 | 77 | 118 |
P value = 0.00129 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
8P GAIN MUTATED | 27 | 23 | 2 |
8P GAIN WILD-TYPE | 228 | 174 | 123 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
8Q GAIN MUTATED | 7 | 20 | 6 | 21 |
8Q GAIN WILD-TYPE | 151 | 76 | 131 | 96 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8Q GAIN MUTATED | 9 | 26 | 4 | 15 |
8Q GAIN WILD-TYPE | 139 | 76 | 96 | 143 |
P value = 0.0396 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
8Q GAIN MUTATED | 9 | 26 | 12 | 8 |
8Q GAIN WILD-TYPE | 134 | 161 | 78 | 118 |
P value = 0.00137 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
8Q GAIN MUTATED | 32 | 24 | 3 |
8Q GAIN WILD-TYPE | 223 | 173 | 122 |
P value = 0.00942 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
8Q GAIN MUTATED | 4 | 2 | 10 | 18 |
8Q GAIN WILD-TYPE | 66 | 40 | 71 | 64 |
P value = 0.0107 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
9P GAIN MUTATED | 16 | 15 | 5 | 8 |
9P GAIN WILD-TYPE | 142 | 81 | 132 | 109 |
P value = 0.0308 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
9P GAIN MUTATED | 15 | 12 | 2 | 15 |
9P GAIN WILD-TYPE | 133 | 90 | 98 | 143 |
P value = 0.0122 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
9P GAIN MUTATED | 27 | 17 | 3 |
9P GAIN WILD-TYPE | 228 | 180 | 122 |
P value = 0.00136 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
10P GAIN MUTATED | 1 | 6 | 0 | 5 |
10P GAIN WILD-TYPE | 157 | 90 | 137 | 112 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P GAIN MUTATED | 2 | 9 | 0 | 1 |
10P GAIN WILD-TYPE | 146 | 93 | 100 | 157 |
P value = 0.00136 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
10P GAIN MUTATED | 12 | 1 | 0 |
10P GAIN WILD-TYPE | 243 | 196 | 125 |
P value = 0.00475 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
10P GAIN MUTATED | 1 | 0 | 0 | 7 |
10P GAIN WILD-TYPE | 69 | 42 | 81 | 75 |
P value = 0.00433 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
10P GAIN MUTATED | 0 | 5 | 0 |
10P GAIN WILD-TYPE | 90 | 65 | 60 |
P value = 0.00253 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
11Q GAIN MUTATED | 2 | 0 | 0 | 8 |
11Q GAIN WILD-TYPE | 68 | 42 | 81 | 74 |
P value = 0.00433 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
12P GAIN MUTATED | 0 | 12 | 3 |
12P GAIN WILD-TYPE | 45 | 56 | 31 |
P value = 0.01 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
12Q GAIN MUTATED | 16 | 15 | 17 |
12Q GAIN WILD-TYPE | 277 | 109 | 112 |
P value = 0.0253 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
12Q GAIN MUTATED | 0 | 9 | 3 |
12Q GAIN WILD-TYPE | 45 | 59 | 31 |
P value = 0.0177 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
14Q GAIN MUTATED | 9 | 5 | 7 | 1 |
14Q GAIN WILD-TYPE | 134 | 182 | 83 | 125 |
P value = 0.0462 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
15Q GAIN MUTATED | 12 | 12 | 1 |
15Q GAIN WILD-TYPE | 243 | 185 | 124 |
P value = 0.039 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
15Q GAIN MUTATED | 0 | 7 | 1 |
15Q GAIN WILD-TYPE | 45 | 61 | 33 |
P value = 0.0148 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
16P GAIN MUTATED | 11 | 10 | 3 | 13 |
16P GAIN WILD-TYPE | 147 | 86 | 134 | 104 |
P value = 0.0041 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
16P GAIN MUTATED | 20 | 17 | 1 |
16P GAIN WILD-TYPE | 235 | 180 | 124 |
P value = 0.0377 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
16P GAIN MUTATED | 5 | 1 | 4 | 13 |
16P GAIN WILD-TYPE | 65 | 41 | 77 | 69 |
P value = 0.028 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
16Q GAIN MUTATED | 9 | 11 | 4 | 12 |
16Q GAIN WILD-TYPE | 149 | 85 | 133 | 105 |
P value = 0.00534 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
16Q GAIN MUTATED | 10 | 15 | 2 | 9 |
16Q GAIN WILD-TYPE | 138 | 87 | 98 | 149 |
P value = 0.0264 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
16Q GAIN MUTATED | 19 | 16 | 2 |
16Q GAIN WILD-TYPE | 236 | 181 | 123 |
P value = 0.0287 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
16Q GAIN MUTATED | 4 | 1 | 4 | 13 |
16Q GAIN WILD-TYPE | 66 | 41 | 77 | 69 |
P value = 0.023 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
16Q GAIN MUTATED | 1 | 8 | 4 | 1 | 0 |
16Q GAIN WILD-TYPE | 43 | 49 | 40 | 29 | 45 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
17P GAIN MUTATED | 9 | 16 | 4 | 15 |
17P GAIN WILD-TYPE | 149 | 80 | 133 | 102 |
P value = 0.0275 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17P GAIN MUTATED | 10 | 16 | 4 | 14 |
17P GAIN WILD-TYPE | 138 | 86 | 96 | 144 |
P value = 0.0274 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
17P GAIN MUTATED | 33 | 8 | 5 |
17P GAIN WILD-TYPE | 260 | 116 | 124 |
P value = 0.0291 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
17P GAIN MUTATED | 23 | 22 | 4 |
17P GAIN WILD-TYPE | 232 | 175 | 121 |
P value = 0.0245 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
17P GAIN MUTATED | 4 | 2 | 5 | 15 |
17P GAIN WILD-TYPE | 66 | 40 | 76 | 67 |
P value = 0.0247 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
17P GAIN MUTATED | 4 | 4 | 1 | 5 | 0 |
17P GAIN WILD-TYPE | 40 | 53 | 43 | 25 | 45 |
P value = 0.00159 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
17Q GAIN MUTATED | 13 | 18 | 6 | 17 |
17Q GAIN WILD-TYPE | 145 | 78 | 131 | 100 |
P value = 0.0495 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
17Q GAIN MUTATED | 7 | 25 | 10 | 16 |
17Q GAIN WILD-TYPE | 136 | 162 | 80 | 110 |
P value = 0.0437 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
17Q GAIN MUTATED | 30 | 25 | 6 |
17Q GAIN WILD-TYPE | 225 | 172 | 119 |
P value = 0.0104 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
17Q GAIN MUTATED | 5 | 2 | 7 | 18 |
17Q GAIN WILD-TYPE | 65 | 40 | 74 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
18P GAIN MUTATED | 12 | 23 | 4 | 16 |
18P GAIN WILD-TYPE | 146 | 73 | 133 | 101 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18P GAIN MUTATED | 11 | 22 | 4 | 18 |
18P GAIN WILD-TYPE | 137 | 80 | 96 | 140 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
18P GAIN MUTATED | 36 | 21 | 1 |
18P GAIN WILD-TYPE | 219 | 176 | 124 |
P value = 0.00893 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
18P GAIN MUTATED | 6 | 1 | 9 | 18 |
18P GAIN WILD-TYPE | 64 | 41 | 72 | 64 |
P value = 0.0276 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
18P GAIN MUTATED | 6 | 11 | 0 |
18P GAIN WILD-TYPE | 39 | 57 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
18Q GAIN MUTATED | 11 | 22 | 5 | 17 |
18Q GAIN WILD-TYPE | 147 | 74 | 132 | 100 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18Q GAIN MUTATED | 10 | 23 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 79 | 94 | 142 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
18Q GAIN MUTATED | 35 | 22 | 1 |
18Q GAIN WILD-TYPE | 220 | 175 | 124 |
P value = 0.0106 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
18Q GAIN MUTATED | 7 | 1 | 8 | 18 |
18Q GAIN WILD-TYPE | 63 | 41 | 73 | 64 |
P value = 0.0265 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
18Q GAIN MUTATED | 6 | 11 | 0 |
18Q GAIN WILD-TYPE | 39 | 57 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
19P GAIN MUTATED | 58 | 33 | 85 | 22 |
19P GAIN WILD-TYPE | 100 | 63 | 52 | 95 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P GAIN MUTATED | 62 | 25 | 58 | 53 |
19P GAIN WILD-TYPE | 86 | 77 | 42 | 105 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19P GAIN MUTATED | 94 | 50 | 68 |
19P GAIN WILD-TYPE | 199 | 74 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
19P GAIN MUTATED | 66 | 56 | 104 |
19P GAIN WILD-TYPE | 189 | 141 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
19P GAIN MUTATED | 25 | 17 | 53 | 13 |
19P GAIN WILD-TYPE | 45 | 25 | 28 | 69 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
19P GAIN MUTATED | 31 | 16 | 37 |
19P GAIN WILD-TYPE | 59 | 54 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
19Q GAIN MUTATED | 51 | 29 | 78 | 15 |
19Q GAIN WILD-TYPE | 107 | 67 | 59 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q GAIN MUTATED | 55 | 18 | 55 | 45 |
19Q GAIN WILD-TYPE | 93 | 84 | 45 | 113 |
P value = 0.00471 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19Q GAIN MUTATED | 82 | 47 | 56 |
19Q GAIN WILD-TYPE | 211 | 77 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
19Q GAIN MUTATED | 53 | 47 | 98 |
19Q GAIN WILD-TYPE | 202 | 150 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
19Q GAIN MUTATED | 21 | 17 | 47 | 7 |
19Q GAIN WILD-TYPE | 49 | 25 | 34 | 75 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
19Q GAIN MUTATED | 25 | 13 | 31 |
19Q GAIN WILD-TYPE | 65 | 57 | 29 |
P value = 0.0448 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
19Q GAIN MUTATED | 8 | 27 | 11 |
19Q GAIN WILD-TYPE | 37 | 41 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
20P GAIN MUTATED | 53 | 29 | 80 | 30 |
20P GAIN WILD-TYPE | 105 | 67 | 57 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P GAIN MUTATED | 55 | 21 | 64 | 52 |
20P GAIN WILD-TYPE | 93 | 81 | 36 | 106 |
P value = 0.00352 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
20P GAIN MUTATED | 60 | 76 | 20 | 56 |
20P GAIN WILD-TYPE | 83 | 111 | 70 | 70 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20P GAIN MUTATED | 85 | 58 | 69 |
20P GAIN WILD-TYPE | 208 | 66 | 60 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
20P GAIN MUTATED | 68 | 71 | 83 |
20P GAIN WILD-TYPE | 187 | 126 | 42 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
20P GAIN MUTATED | 29 | 22 | 41 | 17 |
20P GAIN WILD-TYPE | 41 | 20 | 40 | 65 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
20P GAIN MUTATED | 27 | 17 | 33 |
20P GAIN WILD-TYPE | 63 | 53 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
20Q GAIN MUTATED | 53 | 30 | 80 | 28 |
20Q GAIN WILD-TYPE | 105 | 66 | 57 | 89 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q GAIN MUTATED | 58 | 22 | 62 | 49 |
20Q GAIN WILD-TYPE | 90 | 80 | 38 | 109 |
P value = 0.00174 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
20Q GAIN MUTATED | 61 | 75 | 19 | 55 |
20Q GAIN WILD-TYPE | 82 | 112 | 71 | 71 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20Q GAIN MUTATED | 85 | 57 | 68 |
20Q GAIN WILD-TYPE | 208 | 67 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
20Q GAIN MUTATED | 67 | 70 | 83 |
20Q GAIN WILD-TYPE | 188 | 127 | 42 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
20Q GAIN MUTATED | 28 | 22 | 41 | 16 |
20Q GAIN WILD-TYPE | 42 | 20 | 40 | 66 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
20Q GAIN MUTATED | 28 | 17 | 34 |
20Q GAIN WILD-TYPE | 62 | 53 | 26 |
P value = 0.00301 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
21Q GAIN MUTATED | 29 | 10 | 8 | 8 |
21Q GAIN WILD-TYPE | 129 | 86 | 129 | 109 |
P value = 0.00751 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
21Q GAIN MUTATED | 25 | 6 | 5 | 19 |
21Q GAIN WILD-TYPE | 123 | 96 | 95 | 139 |
P value = 0.0174 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
21Q GAIN MUTATED | 23 | 15 | 5 | 19 |
21Q GAIN WILD-TYPE | 120 | 172 | 85 | 107 |
P value = 0.00378 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
21Q GAIN MUTATED | 26 | 25 | 11 |
21Q GAIN WILD-TYPE | 267 | 99 | 118 |
P value = 0.00571 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
21Q GAIN MUTATED | 17 | 3 | 5 | 8 |
21Q GAIN WILD-TYPE | 53 | 39 | 76 | 74 |
P value = 0.0193 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
21Q GAIN MUTATED | 2 | 16 | 5 |
21Q GAIN WILD-TYPE | 43 | 52 | 29 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
22Q GAIN MUTATED | 6 | 13 | 0 | 12 |
22Q GAIN WILD-TYPE | 152 | 83 | 137 | 105 |
P value = 0.00305 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
22Q GAIN MUTATED | 11 | 11 | 0 | 9 |
22Q GAIN WILD-TYPE | 137 | 91 | 100 | 149 |
P value = 0.00407 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
22Q GAIN MUTATED | 22 | 11 | 1 |
22Q GAIN WILD-TYPE | 233 | 186 | 124 |
P value = 0.0452 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
22Q GAIN MUTATED | 4 | 0 | 6 | 11 |
22Q GAIN WILD-TYPE | 66 | 42 | 75 | 71 |
P value = 0.0296 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
22Q GAIN MUTATED | 5 | 7 | 0 |
22Q GAIN WILD-TYPE | 85 | 63 | 60 |
P value = 0.0469 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
XQ GAIN MUTATED | 0 | 6 | 0 |
XQ GAIN WILD-TYPE | 45 | 62 | 34 |
P value = 0.0498 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
1P LOSS MUTATED | 12 | 3 | 1 |
1P LOSS WILD-TYPE | 243 | 194 | 124 |
P value = 0.0179 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
1P LOSS MUTATED | 2 | 0 | 2 |
1P LOSS WILD-TYPE | 28 | 92 | 23 |
P value = 0.00138 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
2P LOSS MUTATED | 7 | 14 | 3 | 5 |
2P LOSS WILD-TYPE | 151 | 82 | 134 | 112 |
P value = 0.0276 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
2P LOSS MUTATED | 8 | 12 | 2 | 7 |
2P LOSS WILD-TYPE | 140 | 90 | 98 | 151 |
P value = 0.011 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
2P LOSS MUTATED | 16 | 15 | 1 |
2P LOSS WILD-TYPE | 239 | 182 | 124 |
P value = 0.00227 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
2Q LOSS MUTATED | 7 | 14 | 3 | 6 |
2Q LOSS WILD-TYPE | 151 | 82 | 134 | 111 |
P value = 0.0138 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
2Q LOSS MUTATED | 8 | 13 | 2 | 7 |
2Q LOSS WILD-TYPE | 140 | 89 | 98 | 151 |
P value = 0.00896 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
2Q LOSS MUTATED | 17 | 15 | 1 |
2Q LOSS WILD-TYPE | 238 | 182 | 124 |
P value = 0.00208 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
3P LOSS MUTATED | 22 | 18 | 1 |
3P LOSS WILD-TYPE | 233 | 179 | 124 |
P value = 0.0169 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
3P LOSS MUTATED | 2 | 4 | 1 | 2 | 10 |
3P LOSS WILD-TYPE | 42 | 53 | 43 | 28 | 35 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
3Q LOSS MUTATED | 21 | 15 | 0 |
3Q LOSS WILD-TYPE | 234 | 182 | 125 |
P value = 0.0125 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
3Q LOSS MUTATED | 1 | 4 | 1 | 1 | 9 |
3Q LOSS WILD-TYPE | 43 | 53 | 43 | 29 | 36 |
P value = 0.00188 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
4P LOSS MUTATED | 10 | 20 | 4 | 17 |
4P LOSS WILD-TYPE | 138 | 82 | 96 | 141 |
P value = 0.0327 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
4P LOSS MUTATED | 6 | 25 | 10 | 12 |
4P LOSS WILD-TYPE | 137 | 162 | 80 | 114 |
P value = 0.00913 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
4P LOSS MUTATED | 21 | 29 | 6 |
4P LOSS WILD-TYPE | 234 | 168 | 119 |
P value = 0.00159 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
4P LOSS MUTATED | 2 | 1 | 10 | 16 |
4P LOSS WILD-TYPE | 68 | 41 | 71 | 66 |
P value = 0.00217 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
4Q LOSS MUTATED | 12 | 17 | 5 | 14 |
4Q LOSS WILD-TYPE | 146 | 79 | 132 | 103 |
P value = 0.00146 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
4Q LOSS MUTATED | 10 | 19 | 3 | 16 |
4Q LOSS WILD-TYPE | 138 | 83 | 97 | 142 |
P value = 0.0248 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
4Q LOSS MUTATED | 5 | 23 | 10 | 13 |
4Q LOSS WILD-TYPE | 138 | 164 | 80 | 113 |
P value = 0.00507 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
4Q LOSS MUTATED | 24 | 27 | 4 |
4Q LOSS WILD-TYPE | 231 | 170 | 121 |
P value = 0.00161 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
4Q LOSS MUTATED | 2 | 1 | 10 | 16 |
4Q LOSS WILD-TYPE | 68 | 41 | 71 | 66 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
5P LOSS MUTATED | 5 | 21 | 5 | 9 |
5P LOSS WILD-TYPE | 153 | 75 | 132 | 108 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5P LOSS MUTATED | 6 | 22 | 5 | 7 |
5P LOSS WILD-TYPE | 142 | 80 | 95 | 151 |
P value = 0.00416 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
5P LOSS MUTATED | 4 | 24 | 6 | 6 |
5P LOSS WILD-TYPE | 139 | 163 | 84 | 120 |
P value = 0.00649 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
5P LOSS MUTATED | 25 | 16 | 2 |
5P LOSS WILD-TYPE | 230 | 181 | 123 |
P value = 0.00153 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
5P LOSS MUTATED | 1 | 1 | 5 | 14 |
5P LOSS WILD-TYPE | 69 | 41 | 76 | 68 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
5Q LOSS MUTATED | 6 | 20 | 5 | 11 |
5Q LOSS WILD-TYPE | 152 | 76 | 132 | 106 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5Q LOSS MUTATED | 9 | 22 | 4 | 7 |
5Q LOSS WILD-TYPE | 139 | 80 | 96 | 151 |
P value = 0.00103 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
5Q LOSS MUTATED | 4 | 26 | 6 | 6 |
5Q LOSS WILD-TYPE | 139 | 161 | 84 | 120 |
P value = 0.0044 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
5Q LOSS MUTATED | 26 | 17 | 2 |
5Q LOSS WILD-TYPE | 229 | 180 | 123 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
5Q LOSS MUTATED | 0 | 1 | 5 | 16 |
5Q LOSS WILD-TYPE | 70 | 41 | 76 | 66 |
P value = 0.0428 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
5Q LOSS MUTATED | 6 | 10 | 0 |
5Q LOSS WILD-TYPE | 24 | 82 | 25 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
6P LOSS MUTATED | 45 | 37 | 5 |
6P LOSS WILD-TYPE | 210 | 160 | 120 |
P value = 0.0171 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
6Q LOSS MUTATED | 62 | 48 | 16 |
6Q LOSS WILD-TYPE | 193 | 149 | 109 |
P value = 0.0484 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
6Q LOSS MUTATED | 11 | 10 | 3 | 9 | 12 |
6Q LOSS WILD-TYPE | 33 | 47 | 41 | 21 | 33 |
P value = 0.0235 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
7P LOSS MUTATED | 0 | 4 | 1 | 3 |
7P LOSS WILD-TYPE | 158 | 92 | 136 | 114 |
P value = 0.034 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P LOSS MUTATED | 1 | 5 | 0 | 2 |
7P LOSS WILD-TYPE | 147 | 97 | 100 | 156 |
P value = 0.0414 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P LOSS MUTATED | 8 | 0 | 0 |
7P LOSS WILD-TYPE | 285 | 124 | 129 |
P value = 0.0302 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
7P LOSS MUTATED | 7 | 0 | 1 |
7P LOSS WILD-TYPE | 248 | 197 | 124 |
P value = 0.0494 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
8Q LOSS MUTATED | 19 | 10 | 6 | 7 |
8Q LOSS WILD-TYPE | 124 | 177 | 84 | 119 |
P value = 0.00752 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
9P LOSS MUTATED | 53 | 21 | 59 | 44 |
9P LOSS WILD-TYPE | 105 | 75 | 78 | 73 |
P value = 0.00968 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
9P LOSS MUTATED | 8 | 24 | 17 |
9P LOSS WILD-TYPE | 37 | 44 | 17 |
P value = 0.00839 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
9P LOSS MUTATED | 4 | 32 | 13 |
9P LOSS WILD-TYPE | 26 | 60 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
10P LOSS MUTATED | 141 | 63 | 128 | 87 |
10P LOSS WILD-TYPE | 17 | 33 | 9 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P LOSS MUTATED | 127 | 62 | 93 | 137 |
10P LOSS WILD-TYPE | 21 | 40 | 7 | 21 |
P value = 0.0151 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
10P LOSS MUTATED | 129 | 150 | 68 | 107 |
10P LOSS WILD-TYPE | 14 | 37 | 22 | 19 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10P LOSS MUTATED | 226 | 108 | 120 |
10P LOSS WILD-TYPE | 67 | 16 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
10P LOSS MUTATED | 175 | 191 | 114 |
10P LOSS WILD-TYPE | 80 | 6 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
10P LOSS MUTATED | 62 | 39 | 74 | 48 |
10P LOSS WILD-TYPE | 8 | 3 | 7 | 34 |
P value = 0.00137 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
10P LOSS MUTATED | 83 | 52 | 56 |
10P LOSS WILD-TYPE | 7 | 18 | 4 |
P value = 0.0126 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
10P LOSS MUTATED | 22 | 85 | 24 |
10P LOSS WILD-TYPE | 8 | 7 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
10Q LOSS MUTATED | 141 | 69 | 131 | 91 |
10Q LOSS WILD-TYPE | 17 | 27 | 6 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10Q LOSS MUTATED | 127 | 69 | 97 | 139 |
10Q LOSS WILD-TYPE | 21 | 33 | 3 | 19 |
P value = 0.00763 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
10Q LOSS MUTATED | 131 | 157 | 68 | 110 |
10Q LOSS WILD-TYPE | 12 | 30 | 22 | 16 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10Q LOSS MUTATED | 236 | 108 | 122 |
10Q LOSS WILD-TYPE | 57 | 16 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
10Q LOSS MUTATED | 183 | 192 | 117 |
10Q LOSS WILD-TYPE | 72 | 5 | 8 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
10Q LOSS MUTATED | 60 | 41 | 76 | 59 |
10Q LOSS WILD-TYPE | 10 | 1 | 5 | 23 |
P value = 0.00073 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
10Q LOSS MUTATED | 83 | 52 | 57 |
10Q LOSS WILD-TYPE | 7 | 18 | 3 |
P value = 0.021 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
10Q LOSS MUTATED | 23 | 86 | 24 |
10Q LOSS WILD-TYPE | 7 | 6 | 1 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
11P LOSS MUTATED | 27 | 32 | 8 | 22 |
11P LOSS WILD-TYPE | 131 | 64 | 129 | 95 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11P LOSS MUTATED | 26 | 36 | 4 | 23 |
11P LOSS WILD-TYPE | 122 | 66 | 96 | 135 |
P value = 0.0177 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
11P LOSS MUTATED | 62 | 20 | 13 |
11P LOSS WILD-TYPE | 231 | 104 | 116 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
11P LOSS MUTATED | 56 | 40 | 2 |
11P LOSS WILD-TYPE | 199 | 157 | 123 |
P value = 0.00153 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
11P LOSS MUTATED | 12 | 4 | 12 | 29 |
11P LOSS WILD-TYPE | 58 | 38 | 69 | 53 |
P value = 0.0322 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
11P LOSS MUTATED | 11 | 17 | 5 |
11P LOSS WILD-TYPE | 79 | 53 | 55 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
11Q LOSS MUTATED | 31 | 28 | 9 | 18 |
11Q LOSS WILD-TYPE | 127 | 68 | 128 | 99 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11Q LOSS MUTATED | 28 | 28 | 5 | 25 |
11Q LOSS WILD-TYPE | 120 | 74 | 95 | 133 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
11Q LOSS MUTATED | 47 | 43 | 2 |
11Q LOSS WILD-TYPE | 208 | 154 | 123 |
P value = 0.00975 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
12P LOSS MUTATED | 16 | 18 | 7 | 15 |
12P LOSS WILD-TYPE | 142 | 78 | 130 | 102 |
P value = 0.0368 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
12P LOSS MUTATED | 15 | 18 | 5 | 18 |
12P LOSS WILD-TYPE | 133 | 84 | 95 | 140 |
P value = 0.00241 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
12P LOSS MUTATED | 26 | 29 | 4 |
12P LOSS WILD-TYPE | 229 | 168 | 121 |
P value = 0.0395 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
12P LOSS MUTATED | 8 | 0 | 10 | 12 |
12P LOSS WILD-TYPE | 62 | 42 | 71 | 70 |
P value = 0.00829 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
12Q LOSS MUTATED | 13 | 17 | 7 | 16 |
12Q LOSS WILD-TYPE | 145 | 79 | 130 | 101 |
P value = 0.0299 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
12Q LOSS MUTATED | 13 | 18 | 5 | 17 |
12Q LOSS WILD-TYPE | 135 | 84 | 95 | 141 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
12Q LOSS MUTATED | 25 | 30 | 2 |
12Q LOSS WILD-TYPE | 230 | 167 | 123 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
13Q LOSS MUTATED | 58 | 35 | 22 | 47 |
13Q LOSS WILD-TYPE | 100 | 61 | 115 | 70 |
P value = 0.00243 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
13Q LOSS MUTATED | 50 | 40 | 17 | 55 |
13Q LOSS WILD-TYPE | 98 | 62 | 83 | 103 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
13Q LOSS MUTATED | 92 | 83 | 10 |
13Q LOSS WILD-TYPE | 163 | 114 | 115 |
P value = 0.00461 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
13Q LOSS MUTATED | 27 | 7 | 22 | 37 |
13Q LOSS WILD-TYPE | 43 | 35 | 59 | 45 |
P value = 0.0266 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
13Q LOSS MUTATED | 27 | 28 | 11 |
13Q LOSS WILD-TYPE | 63 | 42 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
14Q LOSS MUTATED | 48 | 34 | 13 | 41 |
14Q LOSS WILD-TYPE | 110 | 62 | 124 | 76 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
14Q LOSS MUTATED | 43 | 36 | 10 | 47 |
14Q LOSS WILD-TYPE | 105 | 66 | 90 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
14Q LOSS MUTATED | 86 | 58 | 3 |
14Q LOSS WILD-TYPE | 169 | 139 | 122 |
P value = 0.0296 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
14Q LOSS MUTATED | 28 | 21 | 8 |
14Q LOSS WILD-TYPE | 62 | 49 | 52 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
15Q LOSS MUTATED | 25 | 24 | 11 | 33 |
15Q LOSS WILD-TYPE | 133 | 72 | 126 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
15Q LOSS MUTATED | 20 | 37 | 7 | 29 |
15Q LOSS WILD-TYPE | 128 | 65 | 93 | 129 |
P value = 0.00182 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
15Q LOSS MUTATED | 16 | 48 | 17 | 15 |
15Q LOSS WILD-TYPE | 127 | 139 | 73 | 111 |
P value = 0.00205 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
15Q LOSS MUTATED | 64 | 10 | 22 |
15Q LOSS WILD-TYPE | 229 | 114 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
15Q LOSS MUTATED | 54 | 47 | 3 |
15Q LOSS WILD-TYPE | 201 | 150 | 122 |
P value = 0.022 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
15Q LOSS MUTATED | 11 | 3 | 16 | 24 |
15Q LOSS WILD-TYPE | 59 | 39 | 65 | 58 |
P value = 0.019 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
15Q LOSS MUTATED | 16 | 19 | 5 |
15Q LOSS WILD-TYPE | 74 | 51 | 55 |
P value = 0.00393 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
15Q LOSS MUTATED | 16 | 9 | 3 |
15Q LOSS WILD-TYPE | 29 | 59 | 31 |
P value = 0.0231 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
15Q LOSS MUTATED | 11 | 15 | 2 |
15Q LOSS WILD-TYPE | 19 | 77 | 23 |
P value = 0.0306 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
16P LOSS MUTATED | 31 | 26 | 6 |
16P LOSS WILD-TYPE | 224 | 171 | 119 |
P value = 0.025 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
16Q LOSS MUTATED | 26 | 19 | 10 | 18 |
16Q LOSS WILD-TYPE | 132 | 77 | 127 | 99 |
P value = 0.00998 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
16Q LOSS MUTATED | 43 | 32 | 8 |
16Q LOSS WILD-TYPE | 212 | 165 | 117 |
P value = 0.0205 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17P LOSS MUTATED | 23 | 16 | 8 | 10 |
17P LOSS WILD-TYPE | 125 | 86 | 92 | 148 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
17P LOSS MUTATED | 36 | 29 | 0 |
17P LOSS WILD-TYPE | 219 | 168 | 125 |
P value = 0.00881 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
17Q LOSS MUTATED | 19 | 7 | 9 | 2 |
17Q LOSS WILD-TYPE | 139 | 89 | 128 | 115 |
P value = 0.047 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
17Q LOSS MUTATED | 15 | 15 | 10 |
17Q LOSS WILD-TYPE | 278 | 109 | 119 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
17Q LOSS MUTATED | 18 | 23 | 0 |
17Q LOSS WILD-TYPE | 237 | 174 | 125 |
P value = 0.0255 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
17Q LOSS MUTATED | 9 | 3 | 2 | 2 |
17Q LOSS WILD-TYPE | 61 | 39 | 79 | 80 |
P value = 0.0102 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
18P LOSS MUTATED | 22 | 15 | 6 | 16 |
18P LOSS WILD-TYPE | 136 | 81 | 131 | 101 |
P value = 0.0316 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18P LOSS MUTATED | 19 | 16 | 4 | 20 |
18P LOSS WILD-TYPE | 129 | 86 | 96 | 138 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
18P LOSS MUTATED | 35 | 32 | 4 |
18P LOSS WILD-TYPE | 220 | 165 | 121 |
P value = 0.0428 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
18P LOSS MUTATED | 15 | 13 | 3 |
18P LOSS WILD-TYPE | 75 | 57 | 57 |
P value = 0.034 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
18Q LOSS MUTATED | 20 | 11 | 6 | 16 |
18Q LOSS WILD-TYPE | 138 | 85 | 131 | 101 |
P value = 0.00707 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18Q LOSS MUTATED | 18 | 13 | 2 | 20 |
18Q LOSS WILD-TYPE | 130 | 89 | 98 | 138 |
P value = 0.00233 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
18Q LOSS MUTATED | 29 | 29 | 4 |
18Q LOSS WILD-TYPE | 226 | 168 | 121 |
P value = 0.00272 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
18Q LOSS MUTATED | 11 | 14 | 1 |
18Q LOSS WILD-TYPE | 79 | 56 | 59 |
P value = 0.00167 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
19P LOSS MUTATED | 3 | 10 | 2 | 9 |
19P LOSS WILD-TYPE | 155 | 86 | 135 | 108 |
P value = 0.00291 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P LOSS MUTATED | 4 | 12 | 1 | 7 |
19P LOSS WILD-TYPE | 144 | 90 | 99 | 151 |
P value = 0.0143 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
19P LOSS MUTATED | 3 | 17 | 2 | 4 |
19P LOSS WILD-TYPE | 140 | 170 | 88 | 122 |
P value = 0.00061 (Fisher's exact test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
19P LOSS MUTATED | 3 | 0 | 0 | 10 |
19P LOSS WILD-TYPE | 67 | 42 | 81 | 72 |
P value = 0.0363 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
19P LOSS MUTATED | 1 | 7 | 3 |
19P LOSS WILD-TYPE | 89 | 63 | 57 |
P value = 0.00721 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
19Q LOSS MUTATED | 6 | 10 | 3 | 12 |
19Q LOSS WILD-TYPE | 152 | 86 | 134 | 105 |
P value = 0.00953 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q LOSS MUTATED | 7 | 12 | 1 | 11 |
19Q LOSS WILD-TYPE | 141 | 90 | 99 | 147 |
P value = 0.0321 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
19Q LOSS MUTATED | 20 | 13 | 2 |
19Q LOSS WILD-TYPE | 235 | 184 | 123 |
P value = 0.0013 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
19Q LOSS MUTATED | 7 | 0 | 1 | 11 |
19Q LOSS WILD-TYPE | 63 | 42 | 80 | 71 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
20P LOSS MUTATED | 4 | 10 | 0 | 3 |
20P LOSS WILD-TYPE | 154 | 86 | 137 | 114 |
P value = 2e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P LOSS MUTATED | 5 | 11 | 0 | 1 |
20P LOSS WILD-TYPE | 143 | 91 | 100 | 157 |
P value = 0.0483 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
20P LOSS MUTATED | 2 | 7 | 7 | 2 |
20P LOSS WILD-TYPE | 141 | 180 | 83 | 124 |
P value = 0.00817 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
20P LOSS MUTATED | 14 | 5 | 0 |
20P LOSS WILD-TYPE | 241 | 192 | 125 |
P value = 0.0105 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
20P LOSS MUTATED | 4 | 0 | 0 |
20P LOSS WILD-TYPE | 41 | 68 | 34 |
P value = 0.00202 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
20P LOSS MUTATED | 4 | 0 | 0 |
20P LOSS WILD-TYPE | 26 | 92 | 25 |
P value = 0.00245 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
20Q LOSS MUTATED | 4 | 8 | 0 | 3 |
20Q LOSS WILD-TYPE | 154 | 88 | 137 | 114 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q LOSS MUTATED | 4 | 10 | 0 | 1 |
20Q LOSS WILD-TYPE | 144 | 92 | 100 | 157 |
P value = 0.0389 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
20Q LOSS MUTATED | 11 | 6 | 0 |
20Q LOSS WILD-TYPE | 244 | 191 | 125 |
P value = 0.0391 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
20Q LOSS MUTATED | 3 | 0 | 0 |
20Q LOSS WILD-TYPE | 42 | 68 | 34 |
P value = 0.0124 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
20Q LOSS MUTATED | 3 | 0 | 0 |
20Q LOSS WILD-TYPE | 27 | 92 | 25 |
P value = 0.0228 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
21Q LOSS MUTATED | 5 | 12 | 8 | 11 |
21Q LOSS WILD-TYPE | 153 | 84 | 129 | 106 |
P value = 0.0013 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
21Q LOSS MUTATED | 5 | 17 | 6 | 8 |
21Q LOSS WILD-TYPE | 143 | 85 | 94 | 150 |
P value = 0.0319 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
21Q LOSS MUTATED | 20 | 19 | 3 |
21Q LOSS WILD-TYPE | 235 | 178 | 122 |
P value = 0.0324 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
21Q LOSS MUTATED | 1 | 2 | 6 | 11 |
21Q LOSS WILD-TYPE | 69 | 40 | 75 | 71 |
P value = 0.0264 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
21Q LOSS MUTATED | 1 | 7 | 4 |
21Q LOSS WILD-TYPE | 89 | 63 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
22Q LOSS MUTATED | 79 | 83 | 19 |
22Q LOSS WILD-TYPE | 176 | 114 | 106 |
P value = 0.00408 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
XP LOSS MUTATED | 23 | 32 | 24 | 25 |
XP LOSS WILD-TYPE | 135 | 64 | 113 | 92 |
P value = 0.0105 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
XP LOSS MUTATED | 22 | 33 | 19 | 30 |
XP LOSS WILD-TYPE | 126 | 69 | 81 | 128 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
XP LOSS MUTATED | 43 | 59 | 14 |
XP LOSS WILD-TYPE | 212 | 138 | 111 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
XP LOSS MUTATED | 5 | 5 | 18 | 28 |
XP LOSS WILD-TYPE | 65 | 37 | 63 | 54 |
P value = 0.033 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
XP LOSS MUTATED | 7 | 14 | 6 | 13 | 13 |
XP LOSS WILD-TYPE | 37 | 43 | 38 | 17 | 32 |
P value = 0.0252 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
XQ LOSS MUTATED | 22 | 28 | 22 | 22 |
XQ LOSS WILD-TYPE | 136 | 68 | 115 | 95 |
P value = 0.0236 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
XQ LOSS MUTATED | 19 | 29 | 18 | 28 |
XQ LOSS WILD-TYPE | 129 | 73 | 82 | 130 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
XQ LOSS MUTATED | 37 | 56 | 13 |
XQ LOSS WILD-TYPE | 218 | 141 | 112 |
P value = 0.00874 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
XQ LOSS MUTATED | 5 | 5 | 18 | 21 |
XQ LOSS WILD-TYPE | 65 | 37 | 63 | 61 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/22538152/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/22555065/GBM-TP.transferedmergedcluster.txt
-
Number of patients = 577
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.