This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 68 focal events and 10 molecular subtypes across 577 patients, 259 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p36.21 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_1q32.1 cnv correlated to 'CN_CNMF'.
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amp_1q44 cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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amp_2p24.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_3q26.33 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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amp_4q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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amp_7p11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q11.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q21.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_12q14.1 cnv correlated to 'MIR_CNMF' and 'CN_CNMF'.
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amp_13q34 cnv correlated to 'RPPA_CNMF'.
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amp_14q32.33 cnv correlated to 'MIR_CNMF' and 'MRNASEQ_CNMF'.
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amp_17p13.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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amp_17q25.1 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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amp_19p13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_21q21.1 cnv correlated to 'MRNA_CNMF', 'MIR_CNMF', 'MIR_CHIERARCHICAL', and 'METHLYATION_CNMF'.
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del_1p36.23 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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del_1p22.1 cnv correlated to 'MIR_CHIERARCHICAL' and 'METHLYATION_CNMF'.
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del_1q42.11 cnv correlated to 'RPPA_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_2q37.1 cnv correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.
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del_3p21.1 cnv correlated to 'CN_CNMF'.
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del_3q13.31 cnv correlated to 'CN_CNMF'.
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del_3q29 cnv correlated to 'RPPA_CNMF'.
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del_4p16.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_4q34.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_5q34 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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del_6q22.1 cnv correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_10p15.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_10p13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_10p11.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_10q11.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_10q26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_11p15.5 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_11p11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_11q14.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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del_12p13.1 cnv correlated to 'MRNA_CHIERARCHICAL' and 'METHLYATION_CNMF'.
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del_12q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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del_12q15 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_13q14.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_13q22.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_14q13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_14q24.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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del_15q14 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_16q23.1 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_17p13.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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del_17q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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del_18q22.3 cnv correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
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del_19q13.41 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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del_21q21.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7p11 2 | 507 (88%) | 70 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.00085 (0.00459) |
2e-05 (0.00016) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
amp 7q11 21 | 464 (80%) | 113 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
2e-05 (0.00016) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.0257 (0.0788) |
0.00556 (0.0221) |
0.0049 (0.0201) |
3e-05 (0.000227) |
del 15q14 | 154 (27%) | 423 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.00183 (0.0087) |
7e-05 (0.000506) |
1e-05 (9.71e-05) |
0.00632 (0.0241) |
0.041 (0.111) |
0.0265 (0.0805) |
0.00129 (0.0066) |
0.0173 (0.0575) |
del 9p21 3 | 421 (73%) | 156 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.602 (0.73) |
0.0357 (0.102) |
1e-05 (9.71e-05) |
0.00045 (0.00262) |
0.042 (0.113) |
0.0371 (0.106) |
0.0378 (0.106) |
0.00792 (0.0293) |
del 10p15 3 | 470 (81%) | 107 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.0223 (0.0692) |
0.00362 (0.0157) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.598 (0.729) |
0.0007 (0.0039) |
0.0212 (0.0664) |
0.00019 (0.00119) |
amp 7q31 2 | 473 (82%) | 104 |
0.00199 (0.00933) |
2e-05 (0.00016) |
0.0191 (0.0611) |
0.00571 (0.0224) |
2e-05 (0.00016) |
0.0405 (0.111) |
0.352 (0.515) |
0.00519 (0.021) |
0.482 (0.625) |
0.0099 (0.0361) |
del 10p13 | 471 (82%) | 106 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.00517 (0.021) |
0.00118 (0.00613) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.113 (0.227) |
1e-05 (9.71e-05) |
0.122 (0.24) |
0.00267 (0.0122) |
del 10p11 23 | 476 (82%) | 101 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.00069 (0.00388) |
3e-05 (0.000227) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.192 (0.339) |
0.00011 (0.000733) |
0.0516 (0.134) |
0.0011 (0.00575) |
del 10q11 23 | 489 (85%) | 88 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.00093 (0.00498) |
2e-05 (0.00016) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.0787 (0.182) |
1e-05 (9.71e-05) |
0.105 (0.218) |
0.00376 (0.0162) |
del 10q23 31 | 514 (89%) | 63 |
3e-05 (0.000227) |
1e-05 (9.71e-05) |
0.0342 (0.0993) |
0.00322 (0.0142) |
1e-05 (9.71e-05) |
0.00051 (0.00291) |
0.186 (0.332) |
0.00208 (0.00969) |
0.366 (0.525) |
0.041 (0.111) |
del 11p15 5 | 132 (23%) | 445 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.201 (0.352) |
0.00164 (0.00797) |
1e-05 (9.71e-05) |
2e-05 (0.00016) |
0.307 (0.466) |
0.03 (0.0883) |
0.006 (0.0233) |
0.00228 (0.0105) |
del 17q11 2 | 72 (12%) | 505 |
1e-05 (9.71e-05) |
2e-05 (0.00016) |
0.00396 (0.0169) |
0.0109 (0.0383) |
0.00037 (0.00221) |
7e-05 (0.000506) |
0.00074 (0.00406) |
0.0107 (0.038) |
0.541 (0.683) |
0.562 (0.699) |
amp 7q21 2 | 480 (83%) | 97 |
0.0001 (0.000687) |
1e-05 (9.71e-05) |
0.0588 (0.147) |
0.0001 (0.000687) |
1e-05 (9.71e-05) |
0.00015 (0.000953) |
0.0861 (0.191) |
0.00328 (0.0144) |
0.081 (0.184) |
0.00238 (0.0109) |
amp 8q24 21 | 69 (12%) | 508 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.0206 (0.065) |
0.237 (0.391) |
0.0121 (0.0417) |
0.00139 (0.00695) |
0.0347 (0.101) |
0.0242 (0.0745) |
0.0607 (0.15) |
0.258 (0.412) |
amp 19p13 3 | 246 (43%) | 331 |
1e-05 (9.71e-05) |
3e-05 (0.000227) |
0.0399 (0.11) |
0.00277 (0.0126) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.222 (0.375) |
0.00011 (0.000733) |
0.724 (0.825) |
0.971 (0.991) |
del 10q26 3 | 515 (89%) | 62 |
1e-05 (9.71e-05) |
2e-05 (0.00016) |
0.0919 (0.198) |
0.00147 (0.00729) |
1e-05 (9.71e-05) |
0.00015 (0.000953) |
0.601 (0.729) |
0.0168 (0.056) |
0.29 (0.445) |
0.0349 (0.101) |
amp 19q12 | 216 (37%) | 361 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.379 (0.538) |
0.0043 (0.018) |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.485 (0.629) |
0.00139 (0.00695) |
0.0547 (0.141) |
0.17 (0.312) |
del 5q34 | 70 (12%) | 507 |
2e-05 (0.00016) |
1e-05 (9.71e-05) |
6e-05 (0.000443) |
0.00524 (0.0211) |
0.125 (0.247) |
0.00014 (0.000907) |
0.622 (0.747) |
0.0491 (0.129) |
0.287 (0.443) |
0.131 (0.255) |
del 19q13 41 | 100 (17%) | 477 |
0.0049 (0.0201) |
8e-05 (0.000567) |
0.0608 (0.15) |
0.038 (0.106) |
0.00039 (0.00229) |
2e-05 (0.00016) |
0.203 (0.354) |
0.139 (0.267) |
0.0269 (0.0811) |
0.0941 (0.201) |
amp 17p13 2 | 51 (9%) | 526 |
0.00183 (0.0087) |
0.0138 (0.0466) |
0.0397 (0.11) |
0.111 (0.226) |
0.0668 (0.161) |
0.0441 (0.117) |
0.00612 (0.0236) |
0.489 (0.631) |
0.44 (0.586) |
0.569 (0.705) |
del 11p11 2 | 105 (18%) | 472 |
1e-05 (9.71e-05) |
1e-05 (9.71e-05) |
0.599 (0.729) |
0.0177 (0.058) |
1e-05 (9.71e-05) |
0.00148 (0.00729) |
0.933 (0.97) |
0.134 (0.262) |
0.0566 (0.143) |
0.0891 (0.195) |
del 12q12 | 77 (13%) | 500 |
0.0135 (0.0458) |
0.00079 (0.0043) |
0.423 (0.577) |
0.0831 (0.185) |
0.00011 (0.000733) |
0.0228 (0.0705) |
0.00966 (0.0355) |
0.168 (0.309) |
0.671 (0.787) |
0.666 (0.783) |
del 14q24 2 | 173 (30%) | 404 |
1e-05 (9.71e-05) |
2e-05 (0.00016) |
0.0828 (0.185) |
0.156 (0.29) |
1e-05 (9.71e-05) |
0.0111 (0.0389) |
0.268 (0.426) |
0.0492 (0.129) |
0.0967 (0.205) |
0.941 (0.974) |
del 21q21 1 | 56 (10%) | 521 |
0.00739 (0.0276) |
0.00099 (0.00526) |
0.0314 (0.0919) |
0.21 (0.362) |
0.514 (0.661) |
0.0128 (0.0438) |
0.258 (0.412) |
0.0104 (0.0375) |
1 (1.00) |
1 (1.00) |
amp 4q12 | 108 (19%) | 469 |
0.00017 (0.00107) |
0.00332 (0.0145) |
0.588 (0.72) |
0.472 (0.617) |
0.022 (0.0685) |
0.0117 (0.0402) |
0.0675 (0.161) |
0.435 (0.582) |
0.149 (0.279) |
0.416 (0.572) |
amp 21q21 1 | 70 (12%) | 507 |
0.0114 (0.0394) |
0.0591 (0.147) |
0.0262 (0.08) |
0.00724 (0.0272) |
0.0743 (0.174) |
0.0425 (0.114) |
0.0935 (0.201) |
0.713 (0.819) |
0.103 (0.216) |
0.409 (0.568) |
del 4q34 3 | 93 (16%) | 484 |
0.00757 (0.0281) |
0.0003 (0.00184) |
0.059 (0.147) |
0.0974 (0.206) |
0.00071 (0.00393) |
0.0111 (0.0389) |
0.209 (0.361) |
0.0802 (0.183) |
0.0945 (0.201) |
0.137 (0.264) |
del 11q14 1 | 96 (17%) | 481 |
1e-05 (9.71e-05) |
0.0006 (0.0034) |
0.842 (0.902) |
0.137 (0.264) |
1e-05 (9.71e-05) |
0.182 (0.327) |
0.376 (0.536) |
0.426 (0.579) |
0.0394 (0.109) |
0.16 (0.295) |
del 13q14 2 | 241 (42%) | 336 |
1e-05 (9.71e-05) |
2e-05 (0.00016) |
0.178 (0.322) |
0.145 (0.276) |
1e-05 (9.71e-05) |
0.00012 (0.000792) |
0.83 (0.892) |
0.111 (0.226) |
0.0926 (0.199) |
0.0674 (0.161) |
del 13q22 1 | 230 (40%) | 347 |
2e-05 (0.00016) |
0.0001 (0.000687) |
0.389 (0.546) |
0.34 (0.503) |
1e-05 (9.71e-05) |
3e-05 (0.000227) |
0.836 (0.897) |
0.247 (0.405) |
0.517 (0.663) |
0.282 (0.438) |
del 14q13 1 | 178 (31%) | 399 |
2e-05 (0.00016) |
0.00033 (0.002) |
0.711 (0.819) |
0.663 (0.783) |
1e-05 (9.71e-05) |
0.0376 (0.106) |
0.414 (0.572) |
0.453 (0.599) |
0.442 (0.588) |
0.943 (0.974) |
del 17p13 1 | 98 (17%) | 479 |
0.00125 (0.00644) |
0.00162 (0.00793) |
0.649 (0.77) |
0.896 (0.942) |
1e-05 (9.71e-05) |
0.0428 (0.115) |
0.335 (0.499) |
0.096 (0.204) |
0.745 (0.841) |
0.665 (0.783) |
amp 1p36 21 | 92 (16%) | 485 |
0.324 (0.485) |
0.429 (0.58) |
0.359 (0.52) |
0.115 (0.228) |
0.00013 (0.00085) |
0.783 (0.863) |
0.0825 (0.185) |
0.171 (0.312) |
0.00302 (0.0135) |
0.0193 (0.0612) |
amp 2p24 3 | 49 (8%) | 528 |
0.0656 (0.16) |
0.0168 (0.056) |
0.586 (0.719) |
0.98 (0.994) |
0.201 (0.352) |
0.0186 (0.0609) |
0.282 (0.438) |
0.0333 (0.0971) |
1 (1.00) |
0.626 (0.748) |
amp 3q26 33 | 111 (19%) | 466 |
0.00321 (0.0142) |
0.211 (0.362) |
0.316 (0.477) |
0.0555 (0.141) |
0.00039 (0.00229) |
0.0376 (0.106) |
0.104 (0.217) |
0.925 (0.965) |
0.25 (0.406) |
0.698 (0.811) |
del 1p36 23 | 135 (23%) | 442 |
0.02 (0.0633) |
0.227 (0.38) |
0.776 (0.861) |
0.624 (0.747) |
0.0352 (0.101) |
0.569 (0.705) |
0.742 (0.84) |
0.225 (0.378) |
0.0056 (0.0221) |
0.074 (0.174) |
del 2q22 1 | 47 (8%) | 530 |
0.00035 (0.00211) |
0.0287 (0.0849) |
0.609 (0.734) |
0.547 (0.686) |
0.00174 (0.00839) |
0.156 (0.29) |
0.0911 (0.198) |
0.811 (0.879) |
0.218 (0.372) |
0.431 (0.58) |
del 4p16 3 | 78 (14%) | 499 |
0.055 (0.141) |
0.00454 (0.0189) |
0.106 (0.219) |
0.251 (0.406) |
0.0106 (0.0378) |
0.00048 (0.00277) |
0.753 (0.846) |
0.859 (0.912) |
0.797 (0.872) |
0.946 (0.975) |
del 6q26 | 179 (31%) | 398 |
0.785 (0.863) |
0.758 (0.848) |
0.384 (0.542) |
0.548 (0.686) |
1 (1.00) |
0.00138 (0.00695) |
8e-05 (0.000567) |
0.0553 (0.141) |
0.742 (0.84) |
0.0189 (0.0611) |
del 12q15 | 79 (14%) | 498 |
0.00106 (0.00559) |
0.00193 (0.00911) |
0.267 (0.425) |
0.423 (0.577) |
4e-05 (0.000299) |
0.0505 (0.132) |
0.0652 (0.16) |
0.571 (0.706) |
0.536 (0.679) |
0.397 (0.555) |
amp 1q44 | 99 (17%) | 478 |
0.129 (0.253) |
0.623 (0.747) |
0.356 (0.519) |
0.307 (0.466) |
2e-05 (0.00016) |
0.234 (0.387) |
0.0191 (0.0611) |
0.217 (0.372) |
0.961 (0.984) |
0.552 (0.69) |
amp 12q14 1 | 134 (23%) | 443 |
0.113 (0.227) |
0.147 (0.277) |
0.00994 (0.0361) |
0.0885 (0.195) |
0.00287 (0.0129) |
0.597 (0.729) |
0.276 (0.435) |
0.146 (0.276) |
0.062 (0.153) |
0.139 (0.267) |
amp 14q32 33 | 36 (6%) | 541 |
0.0751 (0.175) |
0.657 (0.779) |
0.0386 (0.108) |
0.92 (0.961) |
0.0912 (0.198) |
0.347 (0.51) |
0.174 (0.316) |
0.0527 (0.137) |
0.0282 (0.0838) |
0.0664 (0.161) |
amp 17q25 1 | 84 (15%) | 493 |
0.0279 (0.0834) |
0.255 (0.409) |
0.159 (0.294) |
0.731 (0.831) |
0.00527 (0.0211) |
0.0825 (0.185) |
0.0696 (0.165) |
0.254 (0.409) |
0.905 (0.947) |
0.692 (0.805) |
del 1p22 1 | 48 (8%) | 529 |
0.976 (0.992) |
0.553 (0.69) |
0.957 (0.982) |
0.00486 (0.0201) |
0.0673 (0.161) |
0.0272 (0.0814) |
0.365 (0.525) |
0.606 (0.732) |
0.642 (0.765) |
0.318 (0.478) |
del 2q37 1 | 55 (10%) | 522 |
0.0176 (0.058) |
0.00619 (0.0238) |
0.548 (0.686) |
0.823 (0.888) |
0.0796 (0.183) |
0.114 (0.228) |
0.136 (0.263) |
0.529 (0.673) |
0.218 (0.372) |
0.0535 (0.138) |
del 6q22 1 | 155 (27%) | 422 |
0.975 (0.992) |
0.944 (0.974) |
0.113 (0.227) |
0.604 (0.73) |
0.277 (0.435) |
0.401 (0.56) |
0.0269 (0.0811) |
0.359 (0.52) |
0.525 (0.673) |
0.0472 (0.125) |
del 12p13 1 | 72 (12%) | 505 |
0.0565 (0.143) |
0.0136 (0.046) |
0.458 (0.603) |
0.234 (0.387) |
0.22 (0.375) |
0.00684 (0.0258) |
0.415 (0.572) |
0.19 (0.338) |
0.944 (0.974) |
0.931 (0.97) |
del 16q23 1 | 101 (18%) | 476 |
0.0106 (0.0378) |
0.489 (0.631) |
0.872 (0.921) |
0.541 (0.683) |
0.0103 (0.0373) |
0.809 (0.879) |
0.221 (0.375) |
0.114 (0.228) |
0.848 (0.905) |
0.785 (0.863) |
del 18q22 3 | 82 (14%) | 495 |
0.059 (0.147) |
0.0864 (0.191) |
0.402 (0.56) |
0.388 (0.546) |
0.00398 (0.0169) |
0.284 (0.44) |
0.292 (0.447) |
0.0191 (0.0611) |
0.365 (0.525) |
0.271 (0.43) |
del 22q13 32 | 212 (37%) | 365 |
0.819 (0.886) |
0.972 (0.991) |
0.0831 (0.185) |
0.417 (0.573) |
1e-05 (9.71e-05) |
0.48 (0.625) |
0.294 (0.449) |
0.367 (0.526) |
0.019 (0.0611) |
0.0848 (0.188) |
amp 1q32 1 | 160 (28%) | 417 |
0.783 (0.863) |
0.0621 (0.153) |
0.289 (0.445) |
0.147 (0.277) |
0.00576 (0.0225) |
0.0977 (0.206) |
0.107 (0.219) |
0.339 (0.503) |
0.469 (0.615) |
0.089 (0.195) |
amp 13q34 | 32 (6%) | 545 |
0.234 (0.387) |
0.203 (0.354) |
0.0683 (0.162) |
0.48 (0.625) |
0.0658 (0.16) |
0.528 (0.673) |
0.041 (0.111) |
0.104 (0.217) |
0.769 (0.856) |
0.804 (0.875) |
del 1q42 11 | 51 (9%) | 526 |
0.233 (0.387) |
0.824 (0.888) |
0.457 (0.603) |
0.286 (0.441) |
0.195 (0.343) |
0.775 (0.861) |
0.903 (0.946) |
0.00675 (0.0256) |
0.429 (0.58) |
0.192 (0.339) |
del 3p21 1 | 54 (9%) | 523 |
0.249 (0.405) |
0.135 (0.262) |
0.669 (0.786) |
0.393 (0.551) |
0.00423 (0.0179) |
0.38 (0.538) |
0.0801 (0.183) |
0.715 (0.82) |
0.463 (0.609) |
0.106 (0.219) |
del 3q13 31 | 56 (10%) | 521 |
0.421 (0.577) |
0.343 (0.507) |
0.952 (0.979) |
0.514 (0.661) |
0.00024 (0.00148) |
0.206 (0.357) |
0.171 (0.312) |
0.102 (0.215) |
1 (1.00) |
0.18 (0.324) |
del 3q29 | 65 (11%) | 512 |
0.0791 (0.182) |
0.186 (0.331) |
0.699 (0.811) |
0.875 (0.923) |
0.628 (0.749) |
0.253 (0.409) |
0.0439 (0.117) |
0.115 (0.229) |
0.953 (0.979) |
0.793 (0.868) |
amp 4p16 3 | 48 (8%) | 529 |
0.223 (0.376) |
0.724 (0.825) |
0.708 (0.818) |
0.0823 (0.185) |
0.962 (0.984) |
0.758 (0.848) |
0.415 (0.572) |
0.753 (0.846) |
1 (1.00) |
1 (1.00) |
amp 11p13 | 31 (5%) | 546 |
0.811 (0.879) |
0.35 (0.512) |
0.533 (0.676) |
0.248 (0.405) |
0.422 (0.577) |
0.683 (0.798) |
0.194 (0.341) |
1 (1.00) |
1 (1.00) |
0.888 (0.934) |
amp 12p13 32 | 84 (15%) | 493 |
0.764 (0.853) |
0.382 (0.541) |
0.444 (0.589) |
0.432 (0.58) |
0.107 (0.219) |
0.766 (0.854) |
0.529 (0.673) |
0.276 (0.435) |
0.357 (0.52) |
0.546 (0.686) |
amp 12q15 | 93 (16%) | 484 |
0.675 (0.79) |
0.315 (0.476) |
0.477 (0.622) |
0.279 (0.436) |
0.0776 (0.18) |
0.855 (0.911) |
0.578 (0.712) |
0.325 (0.486) |
0.377 (0.536) |
0.9 (0.945) |
amp 13q34 | 30 (5%) | 547 |
0.278 (0.435) |
0.209 (0.361) |
0.305 (0.464) |
0.788 (0.865) |
0.0728 (0.172) |
0.869 (0.921) |
0.147 (0.277) |
0.186 (0.331) |
0.747 (0.843) |
0.792 (0.868) |
del 1p36 32 | 100 (17%) | 477 |
0.8 (0.873) |
0.713 (0.819) |
0.581 (0.714) |
0.173 (0.316) |
0.375 (0.536) |
0.282 (0.438) |
0.623 (0.747) |
0.141 (0.268) |
0.181 (0.325) |
0.577 (0.712) |
del 1p32 3 | 61 (11%) | 516 |
0.36 (0.521) |
0.366 (0.525) |
0.599 (0.729) |
0.158 (0.293) |
0.414 (0.572) |
0.716 (0.82) |
0.857 (0.912) |
0.754 (0.846) |
0.734 (0.833) |
0.106 (0.219) |
del 1q44 | 35 (6%) | 542 |
0.846 (0.905) |
0.472 (0.617) |
0.711 (0.819) |
0.246 (0.405) |
0.56 (0.698) |
0.691 (0.805) |
0.801 (0.873) |
0.347 (0.51) |
0.529 (0.673) |
0.322 (0.484) |
del 8p23 2 | 66 (11%) | 511 |
0.254 (0.409) |
0.249 (0.405) |
0.178 (0.322) |
0.275 (0.434) |
0.225 (0.378) |
0.779 (0.863) |
0.996 (1.00) |
0.872 (0.921) |
0.724 (0.825) |
0.436 (0.583) |
del 9q34 2 | 79 (14%) | 498 |
0.128 (0.251) |
0.108 (0.22) |
0.443 (0.588) |
0.227 (0.38) |
0.827 (0.89) |
0.7 (0.811) |
0.0918 (0.198) |
0.664 (0.783) |
0.435 (0.582) |
0.305 (0.464) |
del 16p12 2 | 92 (16%) | 485 |
0.43 (0.58) |
0.229 (0.382) |
0.342 (0.506) |
0.87 (0.921) |
0.141 (0.268) |
0.0772 (0.18) |
0.944 (0.974) |
0.643 (0.765) |
0.428 (0.58) |
0.333 (0.496) |
P value = 0.00013 (Fisher's exact test), Q value = 0.00085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 1(1P36.21) MUTATED | 35 | 48 | 9 |
AMP PEAK 1(1P36.21) WILD-TYPE | 220 | 149 | 116 |
P value = 0.00302 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
AMP PEAK 1(1P36.21) MUTATED | 4 | 21 | 3 |
AMP PEAK 1(1P36.21) WILD-TYPE | 41 | 47 | 31 |
P value = 0.0193 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
AMP PEAK 1(1P36.21) MUTATED | 2 | 24 | 2 |
AMP PEAK 1(1P36.21) WILD-TYPE | 28 | 68 | 23 |
P value = 0.00576 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 2(1Q32.1) MUTATED | 62 | 71 | 27 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 193 | 126 | 98 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 3(1Q44) MUTATED | 37 | 53 | 9 |
AMP PEAK 3(1Q44) WILD-TYPE | 218 | 144 | 116 |
P value = 0.0191 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
AMP PEAK 3(1Q44) MUTATED | 3 | 7 | 6 | 11 | 7 |
AMP PEAK 3(1Q44) WILD-TYPE | 41 | 50 | 38 | 19 | 38 |
P value = 0.0168 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 4(2P24.3) MUTATED | 11 | 17 | 4 | 13 |
AMP PEAK 4(2P24.3) WILD-TYPE | 137 | 85 | 96 | 145 |
P value = 0.0186 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 4(2P24.3) MUTATED | 3 | 2 | 6 | 15 |
AMP PEAK 4(2P24.3) WILD-TYPE | 67 | 40 | 75 | 67 |
P value = 0.0333 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 4(2P24.3) MUTATED | 5 | 13 | 6 |
AMP PEAK 4(2P24.3) WILD-TYPE | 85 | 57 | 54 |
P value = 0.00321 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 5(3Q26.33) MUTATED | 30 | 28 | 15 | 28 |
AMP PEAK 5(3Q26.33) WILD-TYPE | 128 | 68 | 122 | 89 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 5(3Q26.33) MUTATED | 53 | 48 | 10 |
AMP PEAK 5(3Q26.33) WILD-TYPE | 202 | 149 | 115 |
P value = 0.0376 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 5(3Q26.33) MUTATED | 9 | 3 | 19 | 20 |
AMP PEAK 5(3Q26.33) WILD-TYPE | 61 | 39 | 62 | 62 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 7(4Q12) MUTATED | 22 | 34 | 19 | 24 |
AMP PEAK 7(4Q12) WILD-TYPE | 136 | 62 | 118 | 93 |
P value = 0.00332 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 7(4Q12) MUTATED | 18 | 31 | 16 | 34 |
AMP PEAK 7(4Q12) WILD-TYPE | 130 | 71 | 84 | 124 |
P value = 0.022 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 7(4Q12) MUTATED | 48 | 46 | 14 |
AMP PEAK 7(4Q12) WILD-TYPE | 207 | 151 | 111 |
P value = 0.0117 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 7(4Q12) MUTATED | 9 | 3 | 15 | 24 |
AMP PEAK 7(4Q12) WILD-TYPE | 61 | 39 | 66 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 8(7P11.2) MUTATED | 150 | 69 | 132 | 92 |
AMP PEAK 8(7P11.2) WILD-TYPE | 8 | 27 | 5 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 8(7P11.2) MUTATED | 136 | 60 | 99 | 148 |
AMP PEAK 8(7P11.2) WILD-TYPE | 12 | 42 | 1 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 8(7P11.2) MUTATED | 139 | 151 | 74 | 116 |
AMP PEAK 8(7P11.2) WILD-TYPE | 4 | 36 | 16 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 8(7P11.2) MUTATED | 234 | 120 | 126 |
AMP PEAK 8(7P11.2) WILD-TYPE | 59 | 4 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 8(7P11.2) MUTATED | 190 | 192 | 125 |
AMP PEAK 8(7P11.2) WILD-TYPE | 65 | 5 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 8(7P11.2) MUTATED | 67 | 41 | 79 | 54 |
AMP PEAK 8(7P11.2) WILD-TYPE | 3 | 1 | 2 | 28 |
P value = 0.00085 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
AMP PEAK 8(7P11.2) MUTATED | 43 | 51 | 32 | 26 | 44 |
AMP PEAK 8(7P11.2) WILD-TYPE | 1 | 6 | 12 | 4 | 1 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 8(7P11.2) MUTATED | 84 | 52 | 60 |
AMP PEAK 8(7P11.2) WILD-TYPE | 6 | 18 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
AMP PEAK 8(7P11.2) MUTATED | 32 | 67 | 32 |
AMP PEAK 8(7P11.2) WILD-TYPE | 13 | 1 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
AMP PEAK 8(7P11.2) MUTATED | 17 | 90 | 24 |
AMP PEAK 8(7P11.2) WILD-TYPE | 13 | 2 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 9(7Q11.21) MUTATED | 142 | 63 | 113 | 85 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 16 | 33 | 24 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 9(7Q11.21) MUTATED | 129 | 55 | 82 | 137 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 19 | 47 | 18 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 9(7Q11.21) MUTATED | 131 | 138 | 63 | 108 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 12 | 49 | 27 | 18 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 9(7Q11.21) MUTATED | 216 | 114 | 110 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 77 | 10 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 9(7Q11.21) MUTATED | 179 | 183 | 102 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 76 | 14 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 9(7Q11.21) MUTATED | 65 | 38 | 67 | 50 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 5 | 4 | 14 | 32 |
P value = 0.0257 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
AMP PEAK 9(7Q11.21) MUTATED | 41 | 46 | 29 | 25 | 38 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 3 | 11 | 15 | 5 | 7 |
P value = 0.00556 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 9(7Q11.21) MUTATED | 79 | 48 | 52 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 11 | 22 | 8 |
P value = 0.0049 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
AMP PEAK 9(7Q11.21) MUTATED | 29 | 61 | 28 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 16 | 7 | 6 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
AMP PEAK 9(7Q11.21) MUTATED | 15 | 82 | 21 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 15 | 10 | 4 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 10(7Q21.2) MUTATED | 141 | 66 | 120 | 91 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 17 | 30 | 17 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 10(7Q21.2) MUTATED | 126 | 62 | 89 | 141 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 22 | 40 | 11 | 17 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 10(7Q21.2) MUTATED | 224 | 111 | 117 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 69 | 13 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 10(7Q21.2) MUTATED | 184 | 187 | 109 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 71 | 10 | 16 |
P value = 0.00015 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 10(7Q21.2) MUTATED | 62 | 40 | 67 | 54 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 8 | 2 | 14 | 28 |
P value = 0.00328 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 10(7Q21.2) MUTATED | 80 | 50 | 55 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 10 | 20 | 5 |
P value = 0.00238 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
AMP PEAK 10(7Q21.2) MUTATED | 20 | 85 | 21 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 10 | 7 | 4 |
P value = 0.00199 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 11(7Q31.2) MUTATED | 141 | 68 | 113 | 91 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 17 | 28 | 24 | 26 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 11(7Q31.2) MUTATED | 131 | 63 | 83 | 136 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 17 | 39 | 17 | 22 |
P value = 0.0191 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 11(7Q31.2) MUTATED | 126 | 141 | 72 | 107 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 17 | 46 | 18 | 19 |
P value = 0.00571 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 11(7Q31.2) MUTATED | 225 | 110 | 111 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 68 | 14 | 18 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 11(7Q31.2) MUTATED | 190 | 180 | 103 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 65 | 17 | 22 |
P value = 0.0405 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 11(7Q31.2) MUTATED | 62 | 36 | 65 | 58 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 8 | 6 | 16 | 24 |
P value = 0.00519 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 11(7Q31.2) MUTATED | 80 | 49 | 53 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 10 | 21 | 7 |
P value = 0.0099 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
AMP PEAK 11(7Q31.2) MUTATED | 20 | 83 | 20 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 10 | 9 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 12(8Q24.21) MUTATED | 8 | 25 | 6 | 22 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 150 | 71 | 131 | 95 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 12(8Q24.21) MUTATED | 10 | 29 | 6 | 16 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 138 | 73 | 94 | 142 |
P value = 0.0206 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 12(8Q24.21) MUTATED | 10 | 31 | 13 | 10 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 133 | 156 | 77 | 116 |
P value = 0.0121 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 12(8Q24.21) MUTATED | 37 | 26 | 6 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 218 | 171 | 119 |
P value = 0.00139 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 12(8Q24.21) MUTATED | 4 | 3 | 11 | 22 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 66 | 39 | 70 | 60 |
P value = 0.0347 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
AMP PEAK 12(8Q24.21) MUTATED | 2 | 7 | 5 | 9 | 4 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 42 | 50 | 39 | 21 | 41 |
P value = 0.0242 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 12(8Q24.21) MUTATED | 7 | 15 | 5 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 83 | 55 | 55 |
P value = 0.00994 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 15(12Q14.1) MUTATED | 25 | 60 | 18 | 26 |
AMP PEAK 15(12Q14.1) WILD-TYPE | 118 | 127 | 72 | 100 |
P value = 0.00287 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 15(12Q14.1) MUTATED | 56 | 60 | 18 |
AMP PEAK 15(12Q14.1) WILD-TYPE | 199 | 137 | 107 |
P value = 0.041 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
AMP PEAK 17(13Q34) MUTATED | 0 | 3 | 0 | 3 | 4 |
AMP PEAK 17(13Q34) WILD-TYPE | 44 | 54 | 44 | 27 | 41 |
P value = 0.0386 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 19(14Q32.33) MUTATED | 12 | 10 | 10 | 3 |
AMP PEAK 19(14Q32.33) WILD-TYPE | 131 | 177 | 80 | 123 |
P value = 0.0282 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
AMP PEAK 19(14Q32.33) MUTATED | 1 | 3 | 6 |
AMP PEAK 19(14Q32.33) WILD-TYPE | 44 | 65 | 28 |
P value = 0.00183 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 20(17P13.2) MUTATED | 9 | 13 | 6 | 19 |
AMP PEAK 20(17P13.2) WILD-TYPE | 149 | 83 | 131 | 98 |
P value = 0.0138 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 20(17P13.2) MUTATED | 10 | 18 | 5 | 14 |
AMP PEAK 20(17P13.2) WILD-TYPE | 138 | 84 | 95 | 144 |
P value = 0.0397 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 20(17P13.2) MUTATED | 5 | 22 | 8 | 13 |
AMP PEAK 20(17P13.2) WILD-TYPE | 138 | 165 | 82 | 113 |
P value = 0.0441 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 20(17P13.2) MUTATED | 4 | 1 | 5 | 13 |
AMP PEAK 20(17P13.2) WILD-TYPE | 66 | 41 | 76 | 69 |
P value = 0.00612 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
AMP PEAK 20(17P13.2) MUTATED | 5 | 9 | 2 | 6 | 0 |
AMP PEAK 20(17P13.2) WILD-TYPE | 39 | 48 | 42 | 24 | 45 |
P value = 0.0279 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 21(17Q25.1) MUTATED | 19 | 22 | 13 | 19 |
AMP PEAK 21(17Q25.1) WILD-TYPE | 139 | 74 | 124 | 98 |
P value = 0.00527 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 21(17Q25.1) MUTATED | 39 | 37 | 8 |
AMP PEAK 21(17Q25.1) WILD-TYPE | 216 | 160 | 117 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 22(19P13.3) MUTATED | 63 | 35 | 90 | 29 |
AMP PEAK 22(19P13.3) WILD-TYPE | 95 | 61 | 47 | 88 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 22(19P13.3) MUTATED | 67 | 31 | 62 | 57 |
AMP PEAK 22(19P13.3) WILD-TYPE | 81 | 71 | 38 | 101 |
P value = 0.0399 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 22(19P13.3) MUTATED | 59 | 89 | 27 | 57 |
AMP PEAK 22(19P13.3) WILD-TYPE | 84 | 98 | 63 | 69 |
P value = 0.00277 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 22(19P13.3) MUTATED | 108 | 53 | 71 |
AMP PEAK 22(19P13.3) WILD-TYPE | 185 | 71 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 22(19P13.3) MUTATED | 75 | 63 | 108 |
AMP PEAK 22(19P13.3) WILD-TYPE | 180 | 134 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 22(19P13.3) MUTATED | 26 | 20 | 55 | 19 |
AMP PEAK 22(19P13.3) WILD-TYPE | 44 | 22 | 26 | 63 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 22(19P13.3) MUTATED | 32 | 21 | 39 |
AMP PEAK 22(19P13.3) WILD-TYPE | 58 | 49 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 23(19Q12) MUTATED | 60 | 31 | 79 | 18 |
AMP PEAK 23(19Q12) WILD-TYPE | 98 | 65 | 58 | 99 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
AMP PEAK 23(19Q12) MUTATED | 62 | 21 | 54 | 51 |
AMP PEAK 23(19Q12) WILD-TYPE | 86 | 81 | 46 | 107 |
P value = 0.0043 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 23(19Q12) MUTATED | 91 | 49 | 61 |
AMP PEAK 23(19Q12) WILD-TYPE | 202 | 75 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
AMP PEAK 23(19Q12) MUTATED | 63 | 51 | 102 |
AMP PEAK 23(19Q12) WILD-TYPE | 192 | 146 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 23(19Q12) MUTATED | 27 | 18 | 49 | 11 |
AMP PEAK 23(19Q12) WILD-TYPE | 43 | 24 | 32 | 71 |
P value = 0.00139 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
AMP PEAK 23(19Q12) MUTATED | 31 | 17 | 33 |
AMP PEAK 23(19Q12) WILD-TYPE | 59 | 53 | 27 |
P value = 0.0114 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
AMP PEAK 24(21Q21.1) MUTATED | 29 | 12 | 9 | 10 |
AMP PEAK 24(21Q21.1) WILD-TYPE | 129 | 84 | 128 | 107 |
P value = 0.0262 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
AMP PEAK 24(21Q21.1) MUTATED | 25 | 19 | 5 | 19 |
AMP PEAK 24(21Q21.1) WILD-TYPE | 118 | 168 | 85 | 107 |
P value = 0.00724 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
AMP PEAK 24(21Q21.1) MUTATED | 29 | 26 | 13 |
AMP PEAK 24(21Q21.1) WILD-TYPE | 264 | 98 | 116 |
P value = 0.0425 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
AMP PEAK 24(21Q21.1) MUTATED | 16 | 3 | 7 | 9 |
AMP PEAK 24(21Q21.1) WILD-TYPE | 54 | 39 | 74 | 73 |
P value = 0.02 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 2(1P36.23) MUTATED | 36 | 14 | 44 | 27 |
DEL PEAK 2(1P36.23) WILD-TYPE | 122 | 82 | 93 | 90 |
P value = 0.0352 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 2(1P36.23) MUTATED | 49 | 47 | 39 |
DEL PEAK 2(1P36.23) WILD-TYPE | 206 | 150 | 86 |
P value = 0.0056 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 2(1P36.23) MUTATED | 6 | 14 | 15 |
DEL PEAK 2(1P36.23) WILD-TYPE | 39 | 54 | 19 |
P value = 0.00486 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 4(1P22.1) MUTATED | 25 | 3 | 17 |
DEL PEAK 4(1P22.1) WILD-TYPE | 268 | 121 | 112 |
P value = 0.0272 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 4(1P22.1) MUTATED | 2 | 4 | 14 | 7 |
DEL PEAK 4(1P22.1) WILD-TYPE | 68 | 38 | 67 | 75 |
P value = 0.00675 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 5(1Q42.11) MUTATED | 15 | 9 | 1 |
DEL PEAK 5(1Q42.11) WILD-TYPE | 75 | 61 | 59 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 7(2Q22.1) MUTATED | 9 | 19 | 6 | 7 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 149 | 77 | 131 | 110 |
P value = 0.0287 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 7(2Q22.1) MUTATED | 9 | 16 | 5 | 11 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 139 | 86 | 95 | 147 |
P value = 0.00174 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 7(2Q22.1) MUTATED | 22 | 23 | 2 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 233 | 174 | 123 |
P value = 0.0176 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 8(2Q37.1) MUTATED | 12 | 18 | 9 | 10 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 146 | 78 | 128 | 107 |
P value = 0.00619 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 8(2Q37.1) MUTATED | 10 | 20 | 7 | 12 |
DEL PEAK 8(2Q37.1) WILD-TYPE | 138 | 82 | 93 | 146 |
P value = 0.00423 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 9(3P21.1) MUTATED | 29 | 22 | 3 |
DEL PEAK 9(3P21.1) WILD-TYPE | 226 | 175 | 122 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 10(3Q13.31) MUTATED | 34 | 20 | 2 |
DEL PEAK 10(3Q13.31) WILD-TYPE | 221 | 177 | 123 |
P value = 0.0439 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 11(3Q29) MUTATED | 2 | 7 | 3 | 5 | 11 |
DEL PEAK 11(3Q29) WILD-TYPE | 42 | 50 | 41 | 25 | 34 |
P value = 0.00454 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 12(4P16.3) MUTATED | 19 | 25 | 7 | 20 |
DEL PEAK 12(4P16.3) WILD-TYPE | 129 | 77 | 93 | 138 |
P value = 0.0106 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 12(4P16.3) MUTATED | 32 | 37 | 9 |
DEL PEAK 12(4P16.3) WILD-TYPE | 223 | 160 | 116 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 12(4P16.3) MUTATED | 2 | 2 | 10 | 19 |
DEL PEAK 12(4P16.3) WILD-TYPE | 68 | 40 | 71 | 63 |
P value = 0.00757 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 13(4Q34.3) MUTATED | 18 | 23 | 15 | 25 |
DEL PEAK 13(4Q34.3) WILD-TYPE | 140 | 73 | 122 | 92 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 13(4Q34.3) MUTATED | 17 | 31 | 10 | 23 |
DEL PEAK 13(4Q34.3) WILD-TYPE | 131 | 71 | 90 | 135 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 13(4Q34.3) MUTATED | 42 | 43 | 8 |
DEL PEAK 13(4Q34.3) WILD-TYPE | 213 | 154 | 117 |
P value = 0.0111 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 13(4Q34.3) MUTATED | 6 | 3 | 15 | 21 |
DEL PEAK 13(4Q34.3) WILD-TYPE | 64 | 39 | 66 | 61 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 14(5Q34) MUTATED | 8 | 26 | 12 | 17 |
DEL PEAK 14(5Q34) WILD-TYPE | 150 | 70 | 125 | 100 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 14(5Q34) MUTATED | 10 | 31 | 11 | 11 |
DEL PEAK 14(5Q34) WILD-TYPE | 138 | 71 | 89 | 147 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 14(5Q34) MUTATED | 5 | 37 | 9 | 11 |
DEL PEAK 14(5Q34) WILD-TYPE | 138 | 150 | 81 | 115 |
P value = 0.00524 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 14(5Q34) MUTATED | 42 | 5 | 15 |
DEL PEAK 14(5Q34) WILD-TYPE | 251 | 119 | 114 |
P value = 0.00014 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 14(5Q34) MUTATED | 3 | 1 | 10 | 21 |
DEL PEAK 14(5Q34) WILD-TYPE | 67 | 41 | 71 | 61 |
P value = 0.0491 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 14(5Q34) MUTATED | 8 | 14 | 4 |
DEL PEAK 14(5Q34) WILD-TYPE | 82 | 56 | 56 |
P value = 0.0269 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 15(6Q22.1) MUTATED | 15 | 13 | 4 | 9 | 15 |
DEL PEAK 15(6Q22.1) WILD-TYPE | 29 | 44 | 40 | 21 | 30 |
P value = 0.0472 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 15(6Q22.1) MUTATED | 5 | 37 | 10 |
DEL PEAK 15(6Q22.1) WILD-TYPE | 25 | 55 | 15 |
P value = 0.00138 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 16(6Q26) MUTATED | 24 | 21 | 24 | 14 |
DEL PEAK 16(6Q26) WILD-TYPE | 46 | 21 | 57 | 68 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 16(6Q26) MUTATED | 20 | 19 | 3 | 11 | 21 |
DEL PEAK 16(6Q26) WILD-TYPE | 24 | 38 | 41 | 19 | 24 |
P value = 0.0189 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 16(6Q26) MUTATED | 5 | 39 | 12 |
DEL PEAK 16(6Q26) WILD-TYPE | 25 | 53 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 18(9P21.3) MUTATED | 107 | 63 | 121 | 78 |
DEL PEAK 18(9P21.3) WILD-TYPE | 51 | 33 | 16 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 18(9P21.3) MUTATED | 102 | 61 | 91 | 115 |
DEL PEAK 18(9P21.3) WILD-TYPE | 46 | 41 | 9 | 43 |
P value = 0.0357 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 18(9P21.3) MUTATED | 199 | 96 | 101 |
DEL PEAK 18(9P21.3) WILD-TYPE | 94 | 28 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 18(9P21.3) MUTATED | 165 | 136 | 120 |
DEL PEAK 18(9P21.3) WILD-TYPE | 90 | 61 | 5 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 18(9P21.3) MUTATED | 43 | 39 | 67 | 58 |
DEL PEAK 18(9P21.3) WILD-TYPE | 27 | 3 | 14 | 24 |
P value = 0.042 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 18(9P21.3) MUTATED | 36 | 46 | 32 | 19 | 41 |
DEL PEAK 18(9P21.3) WILD-TYPE | 8 | 11 | 12 | 11 | 4 |
P value = 0.0371 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 18(9P21.3) MUTATED | 72 | 49 | 53 |
DEL PEAK 18(9P21.3) WILD-TYPE | 18 | 21 | 7 |
P value = 0.0378 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 18(9P21.3) MUTATED | 25 | 53 | 25 |
DEL PEAK 18(9P21.3) WILD-TYPE | 20 | 15 | 9 |
P value = 0.00792 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 18(9P21.3) MUTATED | 14 | 71 | 18 |
DEL PEAK 18(9P21.3) WILD-TYPE | 16 | 21 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 20(10P15.3) MUTATED | 136 | 61 | 125 | 86 |
DEL PEAK 20(10P15.3) WILD-TYPE | 22 | 35 | 12 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 20(10P15.3) MUTATED | 125 | 59 | 89 | 135 |
DEL PEAK 20(10P15.3) WILD-TYPE | 23 | 43 | 11 | 23 |
P value = 0.0223 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 20(10P15.3) MUTATED | 127 | 142 | 71 | 103 |
DEL PEAK 20(10P15.3) WILD-TYPE | 16 | 45 | 19 | 23 |
P value = 0.00362 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 20(10P15.3) MUTATED | 223 | 105 | 115 |
DEL PEAK 20(10P15.3) WILD-TYPE | 70 | 19 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 20(10P15.3) MUTATED | 174 | 187 | 109 |
DEL PEAK 20(10P15.3) WILD-TYPE | 81 | 10 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 20(10P15.3) MUTATED | 62 | 38 | 72 | 48 |
DEL PEAK 20(10P15.3) WILD-TYPE | 8 | 4 | 9 | 34 |
P value = 7e-04 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 20(10P15.3) MUTATED | 82 | 49 | 54 |
DEL PEAK 20(10P15.3) WILD-TYPE | 8 | 21 | 6 |
P value = 0.0212 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 20(10P15.3) MUTATED | 34 | 60 | 33 |
DEL PEAK 20(10P15.3) WILD-TYPE | 11 | 8 | 1 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 20(10P15.3) MUTATED | 19 | 83 | 25 |
DEL PEAK 20(10P15.3) WILD-TYPE | 11 | 9 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 21(10P13) MUTATED | 139 | 63 | 125 | 83 |
DEL PEAK 21(10P13) WILD-TYPE | 19 | 33 | 12 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 21(10P13) MUTATED | 129 | 58 | 89 | 134 |
DEL PEAK 21(10P13) WILD-TYPE | 19 | 44 | 11 | 24 |
P value = 0.00517 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 21(10P13) MUTATED | 129 | 143 | 69 | 105 |
DEL PEAK 21(10P13) WILD-TYPE | 14 | 44 | 21 | 21 |
P value = 0.00118 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 21(10P13) MUTATED | 223 | 108 | 115 |
DEL PEAK 21(10P13) WILD-TYPE | 70 | 16 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 21(10P13) MUTATED | 174 | 187 | 110 |
DEL PEAK 21(10P13) WILD-TYPE | 81 | 10 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 21(10P13) MUTATED | 62 | 38 | 72 | 46 |
DEL PEAK 21(10P13) WILD-TYPE | 8 | 4 | 9 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 21(10P13) MUTATED | 83 | 45 | 55 |
DEL PEAK 21(10P13) WILD-TYPE | 7 | 25 | 5 |
P value = 0.00267 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 21(10P13) MUTATED | 20 | 83 | 24 |
DEL PEAK 21(10P13) WILD-TYPE | 10 | 9 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 22(10P11.23) MUTATED | 139 | 60 | 130 | 87 |
DEL PEAK 22(10P11.23) WILD-TYPE | 19 | 36 | 7 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 22(10P11.23) MUTATED | 127 | 60 | 93 | 136 |
DEL PEAK 22(10P11.23) WILD-TYPE | 21 | 42 | 7 | 22 |
P value = 0.00069 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 22(10P11.23) MUTATED | 132 | 145 | 68 | 105 |
DEL PEAK 22(10P11.23) WILD-TYPE | 11 | 42 | 22 | 21 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 22(10P11.23) MUTATED | 223 | 106 | 121 |
DEL PEAK 22(10P11.23) WILD-TYPE | 70 | 18 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 22(10P11.23) MUTATED | 170 | 189 | 117 |
DEL PEAK 22(10P11.23) WILD-TYPE | 85 | 8 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 22(10P11.23) MUTATED | 62 | 39 | 72 | 47 |
DEL PEAK 22(10P11.23) WILD-TYPE | 8 | 3 | 9 | 35 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 22(10P11.23) MUTATED | 81 | 49 | 57 |
DEL PEAK 22(10P11.23) WILD-TYPE | 9 | 21 | 3 |
P value = 0.0011 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 22(10P11.23) MUTATED | 20 | 85 | 24 |
DEL PEAK 22(10P11.23) WILD-TYPE | 10 | 7 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 23(10Q11.23) MUTATED | 143 | 67 | 131 | 87 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 15 | 29 | 6 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 23(10Q11.23) MUTATED | 129 | 64 | 96 | 139 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 19 | 38 | 4 | 19 |
P value = 0.00093 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 23(10Q11.23) MUTATED | 133 | 151 | 69 | 111 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 10 | 36 | 21 | 15 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 23(10Q11.23) MUTATED | 229 | 112 | 123 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 64 | 12 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 23(10Q11.23) MUTATED | 174 | 194 | 121 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 81 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 23(10Q11.23) MUTATED | 61 | 39 | 76 | 52 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 9 | 3 | 5 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 23(10Q11.23) MUTATED | 83 | 51 | 60 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 7 | 19 | 0 |
P value = 0.00376 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 23(10Q11.23) MUTATED | 22 | 87 | 24 |
DEL PEAK 23(10Q11.23) WILD-TYPE | 8 | 5 | 1 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 24(10Q23.31) MUTATED | 146 | 76 | 132 | 95 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 12 | 20 | 5 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 24(10Q23.31) MUTATED | 132 | 75 | 98 | 144 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 16 | 27 | 2 | 14 |
P value = 0.0342 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 24(10Q23.31) MUTATED | 135 | 162 | 75 | 113 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 8 | 25 | 15 | 13 |
P value = 0.00322 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 24(10Q23.31) MUTATED | 248 | 115 | 122 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 45 | 9 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 24(10Q23.31) MUTATED | 198 | 194 | 122 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 57 | 3 | 3 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 24(10Q23.31) MUTATED | 63 | 41 | 77 | 63 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 7 | 1 | 4 | 19 |
P value = 0.00208 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 24(10Q23.31) MUTATED | 85 | 56 | 58 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 5 | 14 | 2 |
P value = 0.041 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 24(10Q23.31) MUTATED | 24 | 87 | 23 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 6 | 5 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 25(10Q26.3) MUTATED | 145 | 75 | 135 | 95 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 13 | 21 | 2 | 22 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 25(10Q26.3) MUTATED | 132 | 77 | 97 | 144 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 16 | 25 | 3 | 14 |
P value = 0.00147 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 25(10Q26.3) MUTATED | 252 | 109 | 125 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 41 | 15 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 25(10Q26.3) MUTATED | 199 | 191 | 125 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 56 | 6 | 0 |
P value = 0.00015 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 25(10Q26.3) MUTATED | 61 | 41 | 78 | 62 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 9 | 1 | 3 | 20 |
P value = 0.0168 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 25(10Q26.3) MUTATED | 83 | 59 | 59 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 7 | 11 | 1 |
P value = 0.0349 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 25(10Q26.3) MUTATED | 24 | 85 | 25 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 6 | 7 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 26(11P15.5) MUTATED | 32 | 42 | 12 | 33 |
DEL PEAK 26(11P15.5) WILD-TYPE | 126 | 54 | 125 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 26(11P15.5) MUTATED | 30 | 48 | 9 | 32 |
DEL PEAK 26(11P15.5) WILD-TYPE | 118 | 54 | 91 | 126 |
P value = 0.00164 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 26(11P15.5) MUTATED | 85 | 24 | 18 |
DEL PEAK 26(11P15.5) WILD-TYPE | 208 | 100 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 26(11P15.5) MUTATED | 76 | 50 | 6 |
DEL PEAK 26(11P15.5) WILD-TYPE | 179 | 147 | 119 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 26(11P15.5) MUTATED | 11 | 4 | 16 | 38 |
DEL PEAK 26(11P15.5) WILD-TYPE | 59 | 38 | 65 | 44 |
P value = 0.03 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 26(11P15.5) MUTATED | 16 | 22 | 8 |
DEL PEAK 26(11P15.5) WILD-TYPE | 74 | 48 | 52 |
P value = 0.006 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 26(11P15.5) MUTATED | 18 | 12 | 4 |
DEL PEAK 26(11P15.5) WILD-TYPE | 27 | 56 | 30 |
P value = 0.00228 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 26(11P15.5) MUTATED | 14 | 18 | 2 |
DEL PEAK 26(11P15.5) WILD-TYPE | 16 | 74 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 27(11P11.2) MUTATED | 27 | 35 | 9 | 24 |
DEL PEAK 27(11P11.2) WILD-TYPE | 131 | 61 | 128 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 27(11P11.2) MUTATED | 27 | 36 | 5 | 27 |
DEL PEAK 27(11P11.2) WILD-TYPE | 121 | 66 | 95 | 131 |
P value = 0.0177 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 27(11P11.2) MUTATED | 65 | 22 | 14 |
DEL PEAK 27(11P11.2) WILD-TYPE | 228 | 102 | 115 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 27(11P11.2) MUTATED | 60 | 42 | 3 |
DEL PEAK 27(11P11.2) WILD-TYPE | 195 | 155 | 122 |
P value = 0.00148 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 27(11P11.2) MUTATED | 13 | 4 | 13 | 30 |
DEL PEAK 27(11P11.2) WILD-TYPE | 57 | 38 | 68 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 28(11Q14.1) MUTATED | 30 | 33 | 11 | 14 |
DEL PEAK 28(11Q14.1) WILD-TYPE | 128 | 63 | 126 | 103 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 28(11Q14.1) MUTATED | 30 | 27 | 6 | 25 |
DEL PEAK 28(11Q14.1) WILD-TYPE | 118 | 75 | 94 | 133 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 28(11Q14.1) MUTATED | 47 | 46 | 3 |
DEL PEAK 28(11Q14.1) WILD-TYPE | 208 | 151 | 122 |
P value = 0.0394 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 28(11Q14.1) MUTATED | 9 | 14 | 1 |
DEL PEAK 28(11Q14.1) WILD-TYPE | 36 | 54 | 33 |
P value = 0.0136 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 29(12P13.1) MUTATED | 17 | 20 | 5 | 22 |
DEL PEAK 29(12P13.1) WILD-TYPE | 131 | 82 | 95 | 136 |
P value = 0.00684 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 29(12P13.1) MUTATED | 8 | 0 | 12 | 16 |
DEL PEAK 29(12P13.1) WILD-TYPE | 62 | 42 | 69 | 66 |
P value = 0.0135 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 30(12Q12) MUTATED | 18 | 19 | 10 | 21 |
DEL PEAK 30(12Q12) WILD-TYPE | 140 | 77 | 127 | 96 |
P value = 0.00079 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 30(12Q12) MUTATED | 19 | 26 | 6 | 17 |
DEL PEAK 30(12Q12) WILD-TYPE | 129 | 76 | 94 | 141 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 30(12Q12) MUTATED | 38 | 35 | 4 |
DEL PEAK 30(12Q12) WILD-TYPE | 217 | 162 | 121 |
P value = 0.0228 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 30(12Q12) MUTATED | 7 | 1 | 12 | 17 |
DEL PEAK 30(12Q12) WILD-TYPE | 63 | 41 | 69 | 65 |
P value = 0.00966 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 30(12Q12) MUTATED | 2 | 10 | 7 | 7 | 1 |
DEL PEAK 30(12Q12) WILD-TYPE | 42 | 47 | 37 | 23 | 44 |
P value = 0.00106 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 31(12Q15) MUTATED | 22 | 21 | 7 | 19 |
DEL PEAK 31(12Q15) WILD-TYPE | 136 | 75 | 130 | 98 |
P value = 0.00193 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 31(12Q15) MUTATED | 20 | 22 | 4 | 23 |
DEL PEAK 31(12Q15) WILD-TYPE | 128 | 80 | 96 | 135 |
P value = 4e-05 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 31(12Q15) MUTATED | 36 | 39 | 4 |
DEL PEAK 31(12Q15) WILD-TYPE | 219 | 158 | 121 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 32(13Q14.2) MUTATED | 82 | 45 | 32 | 56 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 76 | 51 | 105 | 61 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 32(13Q14.2) MUTATED | 68 | 50 | 21 | 76 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 80 | 52 | 79 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 32(13Q14.2) MUTATED | 126 | 97 | 18 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 129 | 100 | 107 |
P value = 0.00012 (Fisher's exact test), Q value = 0.00079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 32(13Q14.2) MUTATED | 39 | 9 | 29 | 46 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 31 | 33 | 52 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 33(13Q22.1) MUTATED | 82 | 40 | 30 | 53 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 76 | 56 | 107 | 64 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 33(13Q22.1) MUTATED | 68 | 45 | 21 | 71 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 80 | 57 | 79 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 33(13Q22.1) MUTATED | 119 | 94 | 17 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 136 | 103 | 108 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 33(13Q22.1) MUTATED | 39 | 6 | 32 | 42 |
DEL PEAK 33(13Q22.1) WILD-TYPE | 31 | 36 | 49 | 40 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 34(14Q13.1) MUTATED | 56 | 39 | 21 | 45 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 102 | 57 | 116 | 72 |
P value = 0.00033 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 34(14Q13.1) MUTATED | 49 | 42 | 15 | 55 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 99 | 60 | 85 | 103 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 34(14Q13.1) MUTATED | 93 | 72 | 13 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 162 | 125 | 112 |
P value = 0.0376 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 34(14Q13.1) MUTATED | 26 | 6 | 24 | 30 |
DEL PEAK 34(14Q13.1) WILD-TYPE | 44 | 36 | 57 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 35(14Q24.2) MUTATED | 53 | 43 | 18 | 47 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 105 | 53 | 119 | 70 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 35(14Q24.2) MUTATED | 48 | 46 | 14 | 53 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 100 | 56 | 86 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 35(14Q24.2) MUTATED | 99 | 70 | 4 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 156 | 127 | 121 |
P value = 0.0111 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 35(14Q24.2) MUTATED | 23 | 6 | 24 | 35 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 47 | 36 | 57 | 47 |
P value = 0.0492 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 35(14Q24.2) MUTATED | 29 | 24 | 10 |
DEL PEAK 35(14Q24.2) WILD-TYPE | 61 | 46 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 36(15Q14) MUTATED | 37 | 36 | 20 | 45 |
DEL PEAK 36(15Q14) WILD-TYPE | 121 | 60 | 117 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 36(15Q14) MUTATED | 34 | 47 | 12 | 45 |
DEL PEAK 36(15Q14) WILD-TYPE | 114 | 55 | 88 | 113 |
P value = 0.00183 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 36(15Q14) MUTATED | 30 | 66 | 25 | 22 |
DEL PEAK 36(15Q14) WILD-TYPE | 113 | 121 | 65 | 104 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 36(15Q14) MUTATED | 95 | 15 | 33 |
DEL PEAK 36(15Q14) WILD-TYPE | 198 | 109 | 96 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 36(15Q14) MUTATED | 74 | 71 | 9 |
DEL PEAK 36(15Q14) WILD-TYPE | 181 | 126 | 116 |
P value = 0.00632 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 36(15Q14) MUTATED | 17 | 8 | 19 | 36 |
DEL PEAK 36(15Q14) WILD-TYPE | 53 | 34 | 62 | 46 |
P value = 0.041 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 36(15Q14) MUTATED | 10 | 13 | 14 | 14 | 7 |
DEL PEAK 36(15Q14) WILD-TYPE | 34 | 44 | 30 | 16 | 38 |
P value = 0.0265 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 36(15Q14) MUTATED | 24 | 25 | 9 |
DEL PEAK 36(15Q14) WILD-TYPE | 66 | 45 | 51 |
P value = 0.00129 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 36(15Q14) MUTATED | 23 | 15 | 6 |
DEL PEAK 36(15Q14) WILD-TYPE | 22 | 53 | 28 |
P value = 0.0173 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
DEL PEAK 36(15Q14) MUTATED | 15 | 25 | 4 |
DEL PEAK 36(15Q14) WILD-TYPE | 15 | 67 | 21 |
P value = 0.0106 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 38(16Q23.1) MUTATED | 32 | 24 | 13 | 21 |
DEL PEAK 38(16Q23.1) WILD-TYPE | 126 | 72 | 124 | 96 |
P value = 0.0103 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 38(16Q23.1) MUTATED | 50 | 40 | 11 |
DEL PEAK 38(16Q23.1) WILD-TYPE | 205 | 157 | 114 |
P value = 0.00125 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 39(17P13.1) MUTATED | 33 | 26 | 12 | 17 |
DEL PEAK 39(17P13.1) WILD-TYPE | 125 | 70 | 125 | 100 |
P value = 0.00162 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 39(17P13.1) MUTATED | 32 | 27 | 9 | 20 |
DEL PEAK 39(17P13.1) WILD-TYPE | 116 | 75 | 91 | 138 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 39(17P13.1) MUTATED | 55 | 41 | 2 |
DEL PEAK 39(17P13.1) WILD-TYPE | 200 | 156 | 123 |
P value = 0.0428 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 39(17P13.1) MUTATED | 16 | 3 | 9 | 18 |
DEL PEAK 39(17P13.1) WILD-TYPE | 54 | 39 | 72 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 40(17Q11.2) MUTATED | 36 | 9 | 11 | 5 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 122 | 87 | 126 | 112 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 40(17Q11.2) MUTATED | 35 | 7 | 9 | 10 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 113 | 95 | 91 | 148 |
P value = 0.00396 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 40(17Q11.2) MUTATED | 27 | 18 | 4 | 19 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 116 | 169 | 86 | 107 |
P value = 0.0109 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 40(17Q11.2) MUTATED | 26 | 24 | 18 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 267 | 100 | 111 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 40(17Q11.2) MUTATED | 41 | 27 | 4 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 214 | 170 | 121 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 40(17Q11.2) MUTATED | 17 | 3 | 3 | 3 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 53 | 39 | 78 | 79 |
P value = 0.00074 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 44 | 57 | 44 | 30 | 45 |
DEL PEAK 40(17Q11.2) MUTATED | 12 | 9 | 0 | 4 | 3 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 32 | 48 | 44 | 26 | 42 |
P value = 0.0107 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 40(17Q11.2) MUTATED | 19 | 5 | 4 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 71 | 65 | 56 |
P value = 0.00398 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 41(18Q22.3) MUTATED | 41 | 34 | 7 |
DEL PEAK 41(18Q22.3) WILD-TYPE | 214 | 163 | 118 |
P value = 0.0191 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 41(18Q22.3) MUTATED | 15 | 17 | 4 |
DEL PEAK 41(18Q22.3) WILD-TYPE | 75 | 53 | 56 |
P value = 0.0049 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 42(19Q13.41) MUTATED | 23 | 23 | 15 | 30 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 135 | 73 | 122 | 87 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 42(19Q13.41) MUTATED | 24 | 34 | 8 | 25 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 124 | 68 | 92 | 133 |
P value = 0.038 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
DEL PEAK 42(19Q13.41) MUTATED | 63 | 19 | 15 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 230 | 105 | 114 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 42(19Q13.41) MUTATED | 55 | 37 | 8 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 200 | 160 | 117 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 42(19Q13.41) MUTATED | 9 | 2 | 8 | 29 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 61 | 40 | 73 | 53 |
P value = 0.0269 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 42(19Q13.41) MUTATED | 9 | 6 | 10 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 36 | 62 | 24 |
P value = 0.00739 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 96 | 137 | 117 |
DEL PEAK 43(21Q21.1) MUTATED | 6 | 15 | 12 | 14 |
DEL PEAK 43(21Q21.1) WILD-TYPE | 152 | 81 | 125 | 103 |
P value = 0.00099 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
DEL PEAK 43(21Q21.1) MUTATED | 5 | 19 | 8 | 15 |
DEL PEAK 43(21Q21.1) WILD-TYPE | 143 | 83 | 92 | 143 |
P value = 0.0314 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 187 | 90 | 126 |
DEL PEAK 43(21Q21.1) MUTATED | 8 | 24 | 13 | 8 |
DEL PEAK 43(21Q21.1) WILD-TYPE | 135 | 163 | 77 | 118 |
P value = 0.0128 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 42 | 81 | 82 |
DEL PEAK 43(21Q21.1) MUTATED | 1 | 4 | 8 | 13 |
DEL PEAK 43(21Q21.1) WILD-TYPE | 69 | 38 | 73 | 69 |
P value = 0.0104 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 70 | 60 |
DEL PEAK 43(21Q21.1) MUTATED | 2 | 9 | 8 |
DEL PEAK 43(21Q21.1) WILD-TYPE | 88 | 61 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 255 | 197 | 125 |
DEL PEAK 44(22Q13.32) MUTATED | 89 | 96 | 27 |
DEL PEAK 44(22Q13.32) WILD-TYPE | 166 | 101 | 98 |
P value = 0.019 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 68 | 34 |
DEL PEAK 44(22Q13.32) MUTATED | 16 | 26 | 22 |
DEL PEAK 44(22Q13.32) WILD-TYPE | 29 | 42 | 12 |
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/22538153/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/22555065/GBM-TP.transferedmergedcluster.txt
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Number of patients = 577
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Number of significantly focal cnvs = 68
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Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.