This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 36 genes and 10 molecular subtypes across 283 patients, 44 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
RB1 mutation correlated to 'MRNA_CHIERARCHICAL' and 'METHLYATION_CNMF'.
-
NF1 mutation correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
-
PTEN mutation correlated to 'METHLYATION_CNMF'.
-
IDH1 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
ATRX mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
BRAF mutation correlated to 'MIR_CHIERARCHICAL'.
-
EGFR mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
PDGFRA mutation correlated to 'MRNA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
FBN3 mutation correlated to 'RPPA_CNMF'.
-
IL18RAP mutation correlated to 'MIR_CNMF'.
-
FAM126B mutation correlated to 'MRNA_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
IDH1 | 14 (5%) | 269 |
0.00022 (0.00609) |
1e-05 (0.000514) |
8e-05 (0.0024) |
0.00289 (0.0452) |
1e-05 (0.000514) |
3e-05 (0.00135) |
0.268 (0.813) |
0.00681 (0.0838) |
0.00099 (0.0178) |
1e-05 (0.000514) |
ATRX | 16 (6%) | 267 |
0.00358 (0.0516) |
1e-05 (0.000514) |
0.0162 (0.167) |
0.0184 (0.18) |
1e-05 (0.000514) |
6e-05 (0.00196) |
0.554 (1.00) |
0.0135 (0.143) |
0.00255 (0.0417) |
0.00024 (0.00617) |
TP53 | 80 (28%) | 203 |
0.00075 (0.015) |
1e-05 (0.000514) |
0.0008 (0.0152) |
0.202 (0.769) |
0.00033 (0.00792) |
5e-05 (0.0018) |
0.00698 (0.0838) |
0.0475 (0.356) |
0.00124 (0.0213) |
0.00065 (0.0138) |
EGFR | 74 (26%) | 209 |
0.0861 (0.477) |
0.0578 (0.4) |
0.278 (0.813) |
0.139 (0.654) |
4e-05 (0.0016) |
0.00355 (0.0516) |
0.256 (0.798) |
1e-05 (0.000514) |
0.0239 (0.215) |
0.00606 (0.0808) |
NF1 | 29 (10%) | 254 |
0.102 (0.523) |
0.00039 (0.00877) |
0.0332 (0.266) |
0.931 (1.00) |
0.00762 (0.0885) |
0.0593 (0.403) |
0.0529 (0.381) |
0.0121 (0.132) |
0.482 (0.993) |
0.45 (0.982) |
PDGFRA | 11 (4%) | 272 |
0.00977 (0.11) |
0.148 (0.683) |
1 (1.00) |
0.14 (0.654) |
0.496 (0.998) |
0.214 (0.777) |
0.3 (0.849) |
0.732 (1.00) |
0.0269 (0.234) |
0.00491 (0.068) |
RB1 | 24 (8%) | 259 |
0.0841 (0.477) |
0.0177 (0.177) |
0.105 (0.524) |
0.922 (1.00) |
0.19 (0.762) |
0.0195 (0.182) |
0.816 (1.00) |
0.54 (1.00) |
0.0781 (0.461) |
0.577 (1.00) |
PTEN | 87 (31%) | 196 |
0.151 (0.687) |
0.0753 (0.452) |
0.0447 (0.342) |
0.644 (1.00) |
0.1 (0.523) |
0.0273 (0.234) |
0.247 (0.78) |
0.382 (0.922) |
0.421 (0.953) |
0.646 (1.00) |
BRAF | 6 (2%) | 277 |
0.598 (1.00) |
0.712 (1.00) |
0.317 (0.857) |
0.0285 (0.234) |
0.0967 (0.512) |
1 (1.00) |
0.78 (1.00) |
0.794 (1.00) |
1 (1.00) |
|
FBN3 | 11 (4%) | 272 |
0.348 (0.889) |
0.308 (0.854) |
1 (1.00) |
0.921 (1.00) |
0.088 (0.48) |
1 (1.00) |
0.0197 (0.182) |
0.664 (1.00) |
0.854 (1.00) |
1 (1.00) |
IL18RAP | 7 (2%) | 276 |
0.072 (0.452) |
0.226 (0.777) |
0.0066 (0.0838) |
0.175 (0.738) |
0.485 (0.993) |
1 (1.00) |
0.366 (0.908) |
0.614 (1.00) |
0.685 (1.00) |
0.338 (0.875) |
FAM126B | 4 (1%) | 279 |
0.24 (0.777) |
0.028 (0.234) |
0.587 (1.00) |
0.444 (0.982) |
0.55 (1.00) |
0.683 (1.00) |
1 (1.00) |
0.63 (1.00) |
||
PIK3R1 | 32 (11%) | 251 |
0.415 (0.951) |
0.191 (0.762) |
0.0618 (0.412) |
0.531 (1.00) |
0.0745 (0.452) |
0.417 (0.951) |
0.215 (0.777) |
0.0571 (0.4) |
0.469 (0.993) |
0.22 (0.777) |
PIK3CA | 27 (10%) | 256 |
0.921 (1.00) |
0.288 (0.837) |
0.274 (0.813) |
0.861 (1.00) |
0.744 (1.00) |
0.381 (0.922) |
0.811 (1.00) |
0.405 (0.946) |
0.485 (0.993) |
0.232 (0.777) |
STAG2 | 12 (4%) | 271 |
0.492 (0.995) |
0.7 (1.00) |
0.527 (1.00) |
0.593 (1.00) |
0.488 (0.993) |
0.155 (0.691) |
0.277 (0.813) |
0.335 (0.875) |
0.427 (0.961) |
0.104 (0.524) |
SLC26A3 | 7 (2%) | 276 |
0.847 (1.00) |
0.767 (1.00) |
0.58 (1.00) |
0.365 (0.908) |
0.703 (1.00) |
0.235 (0.777) |
0.485 (0.993) |
0.31 (0.854) |
0.112 (0.547) |
0.164 (0.721) |
SEMG1 | 8 (3%) | 275 |
0.957 (1.00) |
0.176 (0.738) |
0.958 (1.00) |
1 (1.00) |
0.34 (0.875) |
0.271 (0.813) |
1 (1.00) |
0.337 (0.875) |
||
KDR | 8 (3%) | 275 |
0.219 (0.777) |
0.655 (1.00) |
0.245 (0.779) |
0.512 (1.00) |
0.375 (0.918) |
0.34 (0.875) |
0.155 (0.691) |
0.737 (1.00) |
||
RPL5 | 7 (2%) | 276 |
0.399 (0.939) |
0.51 (1.00) |
0.907 (1.00) |
0.469 (0.993) |
0.797 (1.00) |
0.552 (1.00) |
0.69 (1.00) |
0.462 (0.993) |
1 (1.00) |
|
MAP3K1 | 6 (2%) | 277 |
0.93 (1.00) |
0.73 (1.00) |
0.76 (1.00) |
0.646 (1.00) |
0.654 (1.00) |
0.564 (1.00) |
1 (1.00) |
|||
TMPRSS6 | 6 (2%) | 277 |
0.731 (1.00) |
0.703 (1.00) |
0.726 (1.00) |
0.263 (0.81) |
0.583 (1.00) |
1 (1.00) |
0.905 (1.00) |
0.469 (0.993) |
0.572 (1.00) |
1 (1.00) |
PRKCD | 3 (1%) | 280 |
0.0817 (0.474) |
0.0851 (0.477) |
0.235 (0.777) |
1 (1.00) |
0.617 (1.00) |
|||||
TP63 | 6 (2%) | 277 |
0.93 (1.00) |
0.728 (1.00) |
0.316 (0.857) |
0.648 (1.00) |
0.763 (1.00) |
0.037 (0.29) |
0.388 (0.925) |
0.239 (0.777) |
0.109 (0.536) |
|
CHD8 | 9 (3%) | 274 |
0.775 (1.00) |
0.532 (1.00) |
0.172 (0.738) |
0.646 (1.00) |
0.233 (0.777) |
0.311 (0.854) |
0.915 (1.00) |
0.269 (0.813) |
0.612 (1.00) |
|
IL4R | 8 (3%) | 275 |
0.846 (1.00) |
0.388 (0.925) |
0.744 (1.00) |
0.805 (1.00) |
0.53 (1.00) |
0.447 (0.982) |
0.227 (0.777) |
0.886 (1.00) |
0.45 (0.982) |
0.8 (1.00) |
REN | 5 (2%) | 278 |
0.302 (0.849) |
0.414 (0.951) |
0.069 (0.444) |
0.513 (1.00) |
0.742 (1.00) |
0.553 (1.00) |
1 (1.00) |
|||
CD209 | 5 (2%) | 278 |
0.832 (1.00) |
1 (1.00) |
0.328 (0.875) |
0.609 (1.00) |
0.838 (1.00) |
0.904 (1.00) |
1 (1.00) |
|||
MMP13 | 5 (2%) | 278 |
0.832 (1.00) |
0.22 (0.777) |
0.762 (1.00) |
0.0493 (0.362) |
0.204 (0.769) |
|||||
TCF12 | 4 (1%) | 279 |
1 (1.00) |
0.481 (0.993) |
0.587 (1.00) |
0.257 (0.798) |
1 (1.00) |
0.0748 (0.452) |
1 (1.00) |
|||
LZTR1 | 10 (4%) | 273 |
0.804 (1.00) |
0.516 (1.00) |
0.467 (0.993) |
0.702 (1.00) |
0.372 (0.917) |
0.336 (0.875) |
0.2 (0.769) |
0.563 (1.00) |
0.168 (0.728) |
0.751 (1.00) |
ZDHHC4 | 3 (1%) | 280 |
0.236 (0.777) |
1 (1.00) |
0.183 (0.754) |
|||||||
ODF4 | 3 (1%) | 280 |
0.876 (1.00) |
0.35 (0.889) |
1 (1.00) |
0.195 (0.764) |
0.794 (1.00) |
|||||
KEL | 15 (5%) | 268 |
0.293 (0.842) |
0.209 (0.777) |
0.835 (1.00) |
0.886 (1.00) |
0.115 (0.55) |
0.184 (0.754) |
0.675 (1.00) |
0.597 (1.00) |
0.485 (0.993) |
0.649 (1.00) |
TESK1 | 3 (1%) | 280 |
0.205 (0.769) |
0.698 (1.00) |
0.392 (0.929) |
0.602 (1.00) |
0.244 (0.779) |
|||||
MUC17 | 22 (8%) | 261 |
0.0629 (0.412) |
0.193 (0.762) |
0.802 (1.00) |
0.703 (1.00) |
0.296 (0.846) |
1 (1.00) |
0.553 (1.00) |
0.0909 (0.488) |
0.927 (1.00) |
1 (1.00) |
DDX5 | 4 (1%) | 279 |
0.411 (0.951) |
1 (1.00) |
0.646 (1.00) |
0.447 (0.982) |
0.361 (0.908) |
P value = 0.00075 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
TP53 MUTATED | 17 | 18 | 10 | 24 |
TP53 WILD-TYPE | 61 | 23 | 54 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TP53 MUTATED | 16 | 30 | 7 | 16 |
TP53 WILD-TYPE | 47 | 20 | 41 | 63 |
P value = 8e-04 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
TP53 MUTATED | 10 | 41 | 10 | 19 |
TP53 WILD-TYPE | 60 | 57 | 34 | 44 |
P value = 0.202 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TP53 MUTATED | 47 | 15 | 18 |
TP53 WILD-TYPE | 91 | 46 | 58 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
TP53 MUTATED | 36 | 37 | 6 |
TP53 WILD-TYPE | 68 | 70 | 56 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
TP53 MUTATED | 8 | 2 | 10 | 21 |
TP53 WILD-TYPE | 25 | 17 | 32 | 12 |
P value = 0.00698 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
TP53 MUTATED | 8 | 11 | 9 | 11 | 4 |
TP53 WILD-TYPE | 23 | 24 | 15 | 8 | 31 |
P value = 0.0475 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
TP53 MUTATED | 18 | 18 | 7 |
TP53 WILD-TYPE | 40 | 26 | 35 |
P value = 0.00124 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
TP53 MUTATED | 24 | 14 | 7 |
TP53 WILD-TYPE | 21 | 49 | 26 |
P value = 0.00065 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TP53 MUTATED | 19 | 21 | 5 |
TP53 WILD-TYPE | 12 | 65 | 19 |
P value = 0.415 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
PIK3R1 MUTATED | 8 | 1 | 7 | 6 |
PIK3R1 WILD-TYPE | 70 | 40 | 57 | 51 |
P value = 0.191 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PIK3R1 MUTATED | 7 | 6 | 6 | 3 |
PIK3R1 WILD-TYPE | 56 | 44 | 42 | 76 |
P value = 0.0618 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
PIK3R1 MUTATED | 13 | 13 | 3 | 3 |
PIK3R1 WILD-TYPE | 57 | 85 | 41 | 60 |
P value = 0.531 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PIK3R1 MUTATED | 16 | 5 | 11 |
PIK3R1 WILD-TYPE | 122 | 56 | 65 |
P value = 0.0745 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
PIK3R1 MUTATED | 13 | 7 | 11 |
PIK3R1 WILD-TYPE | 91 | 100 | 51 |
P value = 0.417 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
PIK3R1 MUTATED | 1 | 2 | 4 | 5 |
PIK3R1 WILD-TYPE | 32 | 17 | 38 | 28 |
P value = 0.215 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
PIK3R1 MUTATED | 9 | 4 | 3 | 1 | 5 |
PIK3R1 WILD-TYPE | 22 | 31 | 21 | 18 | 30 |
P value = 0.0571 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
PIK3R1 MUTATED | 14 | 5 | 3 |
PIK3R1 WILD-TYPE | 44 | 39 | 39 |
P value = 0.469 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
PIK3R1 MUTATED | 5 | 6 | 1 |
PIK3R1 WILD-TYPE | 40 | 57 | 32 |
P value = 0.22 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PIK3R1 MUTATED | 4 | 8 | 0 |
PIK3R1 WILD-TYPE | 27 | 78 | 24 |
P value = 0.0841 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
RB1 MUTATED | 11 | 1 | 3 | 3 |
RB1 WILD-TYPE | 67 | 40 | 61 | 54 |
P value = 0.0177 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
RB1 MUTATED | 5 | 2 | 0 | 11 |
RB1 WILD-TYPE | 58 | 48 | 48 | 68 |
P value = 0.105 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
RB1 MUTATED | 10 | 4 | 3 | 7 |
RB1 WILD-TYPE | 60 | 94 | 41 | 56 |
P value = 0.922 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
RB1 MUTATED | 12 | 6 | 6 |
RB1 WILD-TYPE | 126 | 55 | 70 |
P value = 0.19 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
RB1 MUTATED | 10 | 12 | 2 |
RB1 WILD-TYPE | 94 | 95 | 60 |
P value = 0.0195 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
RB1 MUTATED | 8 | 1 | 2 | 1 |
RB1 WILD-TYPE | 25 | 18 | 40 | 32 |
P value = 0.816 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
RB1 MUTATED | 4 | 2 | 1 | 1 | 2 |
RB1 WILD-TYPE | 27 | 33 | 23 | 18 | 33 |
P value = 0.54 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
RB1 MUTATED | 6 | 2 | 2 |
RB1 WILD-TYPE | 52 | 42 | 40 |
P value = 0.0781 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
RB1 MUTATED | 1 | 8 | 1 |
RB1 WILD-TYPE | 44 | 55 | 32 |
P value = 0.577 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
RB1 MUTATED | 1 | 8 | 1 |
RB1 WILD-TYPE | 30 | 78 | 23 |
P value = 0.102 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
NF1 MUTATED | 12 | 3 | 4 | 2 |
NF1 WILD-TYPE | 66 | 38 | 60 | 55 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
NF1 MUTATED | 14 | 1 | 1 | 5 |
NF1 WILD-TYPE | 49 | 49 | 47 | 74 |
P value = 0.0332 (Fisher's exact test), Q value = 0.27
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
NF1 MUTATED | 12 | 4 | 4 | 8 |
NF1 WILD-TYPE | 58 | 94 | 40 | 55 |
P value = 0.931 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
NF1 MUTATED | 14 | 7 | 7 |
NF1 WILD-TYPE | 124 | 54 | 69 |
P value = 0.00762 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
NF1 MUTATED | 19 | 6 | 4 |
NF1 WILD-TYPE | 85 | 101 | 58 |
P value = 0.0593 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
NF1 MUTATED | 7 | 2 | 1 | 3 |
NF1 WILD-TYPE | 26 | 17 | 41 | 30 |
P value = 0.0529 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
NF1 MUTATED | 8 | 3 | 3 | 1 | 1 |
NF1 WILD-TYPE | 23 | 32 | 21 | 18 | 34 |
P value = 0.0121 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
NF1 MUTATED | 12 | 3 | 1 |
NF1 WILD-TYPE | 46 | 41 | 41 |
P value = 0.482 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
NF1 MUTATED | 2 | 5 | 4 |
NF1 WILD-TYPE | 43 | 58 | 29 |
P value = 0.45 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
NF1 MUTATED | 1 | 7 | 3 |
NF1 WILD-TYPE | 30 | 79 | 21 |
P value = 0.151 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
PTEN MUTATED | 27 | 9 | 16 | 23 |
PTEN WILD-TYPE | 51 | 32 | 48 | 34 |
P value = 0.0753 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PTEN MUTATED | 18 | 16 | 9 | 32 |
PTEN WILD-TYPE | 45 | 34 | 39 | 47 |
P value = 0.0447 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
PTEN MUTATED | 26 | 21 | 18 | 22 |
PTEN WILD-TYPE | 44 | 77 | 26 | 41 |
P value = 0.644 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PTEN MUTATED | 45 | 21 | 21 |
PTEN WILD-TYPE | 93 | 40 | 55 |
P value = 0.1 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
PTEN MUTATED | 38 | 34 | 13 |
PTEN WILD-TYPE | 66 | 73 | 49 |
P value = 0.0273 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
PTEN MUTATED | 15 | 2 | 10 | 13 |
PTEN WILD-TYPE | 18 | 17 | 32 | 20 |
P value = 0.247 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
PTEN MUTATED | 12 | 8 | 11 | 6 | 8 |
PTEN WILD-TYPE | 19 | 27 | 13 | 13 | 27 |
P value = 0.382 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
PTEN MUTATED | 22 | 12 | 11 |
PTEN WILD-TYPE | 36 | 32 | 31 |
P value = 0.421 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
PTEN MUTATED | 11 | 23 | 11 |
PTEN WILD-TYPE | 34 | 40 | 22 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PTEN MUTATED | 8 | 28 | 9 |
PTEN WILD-TYPE | 23 | 58 | 15 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
IDH1 MUTATED | 1 | 3 | 0 | 9 |
IDH1 WILD-TYPE | 77 | 38 | 64 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
IDH1 MUTATED | 0 | 13 | 0 | 0 |
IDH1 WILD-TYPE | 63 | 37 | 48 | 79 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
IDH1 MUTATED | 0 | 13 | 1 | 0 |
IDH1 WILD-TYPE | 70 | 85 | 43 | 63 |
P value = 0.00289 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
IDH1 MUTATED | 13 | 0 | 1 |
IDH1 WILD-TYPE | 125 | 61 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
IDH1 MUTATED | 13 | 0 | 0 |
IDH1 WILD-TYPE | 91 | 107 | 62 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
IDH1 MUTATED | 0 | 0 | 0 | 9 |
IDH1 WILD-TYPE | 33 | 19 | 42 | 24 |
P value = 0.268 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
IDH1 MUTATED | 0 | 2 | 3 | 1 | 1 |
IDH1 WILD-TYPE | 31 | 33 | 21 | 18 | 34 |
P value = 0.00681 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
IDH1 MUTATED | 1 | 6 | 0 |
IDH1 WILD-TYPE | 57 | 38 | 42 |
P value = 0.00099 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
IDH1 MUTATED | 7 | 0 | 1 |
IDH1 WILD-TYPE | 38 | 63 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
IDH1 MUTATED | 8 | 0 | 0 |
IDH1 WILD-TYPE | 23 | 86 | 24 |
P value = 0.921 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
PIK3CA MUTATED | 7 | 5 | 7 | 5 |
PIK3CA WILD-TYPE | 71 | 36 | 57 | 52 |
P value = 0.288 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PIK3CA MUTATED | 8 | 6 | 6 | 4 |
PIK3CA WILD-TYPE | 55 | 44 | 42 | 75 |
P value = 0.274 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
PIK3CA MUTATED | 9 | 10 | 1 | 6 |
PIK3CA WILD-TYPE | 61 | 88 | 43 | 57 |
P value = 0.861 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PIK3CA MUTATED | 12 | 6 | 8 |
PIK3CA WILD-TYPE | 126 | 55 | 68 |
P value = 0.744 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
PIK3CA MUTATED | 11 | 8 | 6 |
PIK3CA WILD-TYPE | 93 | 99 | 56 |
P value = 0.381 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
PIK3CA MUTATED | 5 | 0 | 4 | 3 |
PIK3CA WILD-TYPE | 28 | 19 | 38 | 30 |
P value = 0.811 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
PIK3CA MUTATED | 2 | 3 | 3 | 3 | 3 |
PIK3CA WILD-TYPE | 29 | 32 | 21 | 16 | 32 |
P value = 0.405 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
PIK3CA MUTATED | 6 | 6 | 2 |
PIK3CA WILD-TYPE | 52 | 38 | 40 |
P value = 0.485 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
PIK3CA MUTATED | 5 | 3 | 2 |
PIK3CA WILD-TYPE | 40 | 60 | 31 |
P value = 0.232 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PIK3CA MUTATED | 4 | 6 | 0 |
PIK3CA WILD-TYPE | 27 | 80 | 24 |
P value = 0.492 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
STAG2 MUTATED | 4 | 3 | 1 | 2 |
STAG2 WILD-TYPE | 74 | 38 | 63 | 55 |
P value = 0.7 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
STAG2 MUTATED | 2 | 1 | 3 | 4 |
STAG2 WILD-TYPE | 61 | 49 | 45 | 75 |
P value = 0.527 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
STAG2 MUTATED | 4 | 6 | 1 | 1 |
STAG2 WILD-TYPE | 66 | 92 | 43 | 62 |
P value = 0.593 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
STAG2 MUTATED | 5 | 2 | 5 |
STAG2 WILD-TYPE | 133 | 59 | 71 |
P value = 0.488 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
STAG2 MUTATED | 5 | 3 | 4 |
STAG2 WILD-TYPE | 99 | 104 | 58 |
P value = 0.155 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
STAG2 MUTATED | 3 | 1 | 0 | 1 |
STAG2 WILD-TYPE | 30 | 18 | 42 | 32 |
P value = 0.277 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
STAG2 MUTATED | 3 | 0 | 2 | 1 | 1 |
STAG2 WILD-TYPE | 28 | 35 | 22 | 18 | 34 |
P value = 0.335 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
STAG2 MUTATED | 5 | 1 | 1 |
STAG2 WILD-TYPE | 53 | 43 | 41 |
P value = 0.427 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
STAG2 MUTATED | 1 | 3 | 3 |
STAG2 WILD-TYPE | 44 | 60 | 30 |
P value = 0.104 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
STAG2 MUTATED | 0 | 4 | 3 |
STAG2 WILD-TYPE | 31 | 82 | 21 |
P value = 0.847 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
SLC26A3 MUTATED | 1 | 1 | 2 | 2 |
SLC26A3 WILD-TYPE | 77 | 40 | 62 | 55 |
P value = 0.767 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
SLC26A3 MUTATED | 2 | 1 | 2 | 1 |
SLC26A3 WILD-TYPE | 61 | 49 | 46 | 78 |
P value = 0.58 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
SLC26A3 MUTATED | 1 | 4 | 0 | 2 |
SLC26A3 WILD-TYPE | 69 | 94 | 44 | 61 |
P value = 0.365 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
SLC26A3 MUTATED | 4 | 0 | 3 |
SLC26A3 WILD-TYPE | 134 | 61 | 73 |
P value = 0.703 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
SLC26A3 MUTATED | 2 | 4 | 1 |
SLC26A3 WILD-TYPE | 102 | 103 | 61 |
P value = 0.235 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
SLC26A3 MUTATED | 0 | 1 | 2 | 0 |
SLC26A3 WILD-TYPE | 33 | 18 | 40 | 33 |
P value = 0.485 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
SLC26A3 MUTATED | 1 | 2 | 0 | 1 | 0 |
SLC26A3 WILD-TYPE | 30 | 33 | 24 | 18 | 35 |
P value = 0.31 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
SLC26A3 MUTATED | 3 | 0 | 1 |
SLC26A3 WILD-TYPE | 55 | 44 | 41 |
P value = 0.112 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
SLC26A3 MUTATED | 2 | 0 | 2 |
SLC26A3 WILD-TYPE | 43 | 63 | 31 |
P value = 0.164 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
SLC26A3 MUTATED | 2 | 1 | 1 |
SLC26A3 WILD-TYPE | 29 | 85 | 23 |
P value = 0.957 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
SEMG1 MUTATED | 2 | 1 | 3 | 2 |
SEMG1 WILD-TYPE | 76 | 40 | 61 | 55 |
P value = 0.176 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
SEMG1 MUTATED | 0 | 2 | 1 | 5 |
SEMG1 WILD-TYPE | 63 | 48 | 47 | 74 |
P value = 0.958 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
SEMG1 MUTATED | 2 | 4 | 1 | 1 |
SEMG1 WILD-TYPE | 68 | 94 | 43 | 62 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
SEMG1 MUTATED | 4 | 2 | 2 |
SEMG1 WILD-TYPE | 134 | 59 | 74 |
P value = 0.34 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
SEMG1 MUTATED | 1 | 5 | 2 |
SEMG1 WILD-TYPE | 103 | 102 | 60 |
P value = 0.271 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
SEMG1 MUTATED | 2 | 0 | 0 | 2 |
SEMG1 WILD-TYPE | 31 | 19 | 42 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
SEMG1 MUTATED | 1 | 1 | 1 |
SEMG1 WILD-TYPE | 44 | 62 | 32 |
P value = 0.337 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
SEMG1 MUTATED | 1 | 1 | 1 |
SEMG1 WILD-TYPE | 30 | 85 | 23 |
P value = 0.219 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
KDR MUTATED | 1 | 2 | 1 | 4 |
KDR WILD-TYPE | 77 | 39 | 63 | 53 |
P value = 0.655 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
KDR MUTATED | 1 | 3 | 1 | 3 |
KDR WILD-TYPE | 62 | 47 | 47 | 76 |
P value = 0.245 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
KDR MUTATED | 2 | 1 | 3 | 2 |
KDR WILD-TYPE | 68 | 97 | 41 | 61 |
P value = 0.512 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
KDR MUTATED | 6 | 1 | 1 |
KDR WILD-TYPE | 132 | 60 | 75 |
P value = 0.375 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
KDR MUTATED | 4 | 4 | 0 |
KDR WILD-TYPE | 100 | 103 | 62 |
P value = 0.34 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
KDR MUTATED | 2 | 0 | 0 | 1 |
KDR WILD-TYPE | 31 | 19 | 42 | 32 |
P value = 0.155 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
KDR MUTATED | 2 | 1 | 0 | 2 | 0 |
KDR WILD-TYPE | 29 | 34 | 24 | 17 | 35 |
P value = 0.737 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
KDR MUTATED | 3 | 1 | 1 |
KDR WILD-TYPE | 55 | 43 | 41 |
P value = 0.399 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
RPL5 MUTATED | 2 | 2 | 2 | 0 |
RPL5 WILD-TYPE | 76 | 39 | 62 | 57 |
P value = 0.51 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
RPL5 MUTATED | 3 | 0 | 1 | 2 |
RPL5 WILD-TYPE | 60 | 50 | 47 | 77 |
P value = 0.907 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
RPL5 MUTATED | 1 | 3 | 1 | 2 |
RPL5 WILD-TYPE | 69 | 95 | 43 | 61 |
P value = 0.469 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
RPL5 MUTATED | 3 | 3 | 1 |
RPL5 WILD-TYPE | 135 | 58 | 75 |
P value = 0.797 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
RPL5 MUTATED | 3 | 2 | 2 |
RPL5 WILD-TYPE | 101 | 105 | 60 |
P value = 0.552 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
RPL5 MUTATED | 2 | 0 | 1 | 0 | 1 |
RPL5 WILD-TYPE | 29 | 35 | 23 | 19 | 34 |
P value = 0.69 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
RPL5 MUTATED | 1 | 1 | 2 |
RPL5 WILD-TYPE | 57 | 43 | 40 |
P value = 0.462 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
RPL5 MUTATED | 2 | 1 | 0 |
RPL5 WILD-TYPE | 43 | 62 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
RPL5 MUTATED | 1 | 2 | 0 |
RPL5 WILD-TYPE | 30 | 84 | 24 |
P value = 0.00358 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
ATRX MUTATED | 2 | 4 | 0 | 7 |
ATRX WILD-TYPE | 76 | 37 | 64 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
ATRX MUTATED | 0 | 11 | 0 | 2 |
ATRX WILD-TYPE | 63 | 39 | 48 | 77 |
P value = 0.0162 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
ATRX MUTATED | 3 | 11 | 2 | 0 |
ATRX WILD-TYPE | 67 | 87 | 42 | 63 |
P value = 0.0184 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
ATRX MUTATED | 13 | 0 | 3 |
ATRX WILD-TYPE | 125 | 61 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
ATRX MUTATED | 14 | 0 | 1 |
ATRX WILD-TYPE | 90 | 107 | 61 |
P value = 6e-05 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
ATRX MUTATED | 0 | 0 | 0 | 8 |
ATRX WILD-TYPE | 33 | 19 | 42 | 25 |
P value = 0.554 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
ATRX MUTATED | 2 | 1 | 3 | 1 | 1 |
ATRX WILD-TYPE | 29 | 34 | 21 | 18 | 34 |
P value = 0.0135 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
ATRX MUTATED | 2 | 6 | 0 |
ATRX WILD-TYPE | 56 | 38 | 42 |
P value = 0.00255 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
ATRX MUTATED | 7 | 1 | 0 |
ATRX WILD-TYPE | 38 | 62 | 33 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
ATRX MUTATED | 7 | 1 | 0 |
ATRX WILD-TYPE | 24 | 85 | 24 |
P value = 0.93 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
MAP3K1 MUTATED | 1 | 1 | 2 | 1 |
MAP3K1 WILD-TYPE | 77 | 40 | 62 | 56 |
P value = 0.73 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
MAP3K1 MUTATED | 1 | 1 | 2 | 1 |
MAP3K1 WILD-TYPE | 62 | 49 | 46 | 78 |
P value = 0.76 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
MAP3K1 MUTATED | 1 | 3 | 0 | 2 |
MAP3K1 WILD-TYPE | 69 | 95 | 44 | 61 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
MAP3K1 MUTATED | 2 | 2 | 2 |
MAP3K1 WILD-TYPE | 136 | 59 | 74 |
P value = 0.654 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
MAP3K1 MUTATED | 1 | 3 | 2 |
MAP3K1 WILD-TYPE | 103 | 104 | 60 |
P value = 0.564 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
MAP3K1 MUTATED | 1 | 3 | 0 |
MAP3K1 WILD-TYPE | 44 | 60 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
MAP3K1 MUTATED | 1 | 3 | 0 |
MAP3K1 WILD-TYPE | 30 | 83 | 24 |
P value = 0.598 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
BRAF MUTATED | 1 | 1 | 2 | 0 |
BRAF WILD-TYPE | 77 | 40 | 62 | 57 |
P value = 0.712 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
BRAF MUTATED | 2 | 0 | 1 | 1 |
BRAF WILD-TYPE | 61 | 50 | 47 | 78 |
P value = 0.317 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
BRAF MUTATED | 2 | 1 | 0 | 3 |
BRAF WILD-TYPE | 68 | 97 | 44 | 60 |
P value = 0.0285 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
BRAF MUTATED | 2 | 4 | 0 |
BRAF WILD-TYPE | 136 | 57 | 76 |
P value = 0.0967 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
BRAF MUTATED | 4 | 0 | 2 |
BRAF WILD-TYPE | 100 | 107 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
BRAF MUTATED | 1 | 1 | 0 | 0 | 1 |
BRAF WILD-TYPE | 30 | 34 | 24 | 19 | 34 |
P value = 0.78 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
BRAF MUTATED | 2 | 1 | 0 |
BRAF WILD-TYPE | 56 | 43 | 42 |
P value = 0.794 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
BRAF MUTATED | 1 | 2 | 0 |
BRAF WILD-TYPE | 44 | 61 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
BRAF MUTATED | 1 | 2 | 0 |
BRAF WILD-TYPE | 30 | 84 | 24 |
P value = 0.0861 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
EGFR MUTATED | 26 | 8 | 23 | 11 |
EGFR WILD-TYPE | 52 | 33 | 41 | 46 |
P value = 0.0578 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
EGFR MUTATED | 18 | 7 | 17 | 26 |
EGFR WILD-TYPE | 45 | 43 | 31 | 53 |
P value = 0.278 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
EGFR MUTATED | 19 | 31 | 7 | 17 |
EGFR WILD-TYPE | 51 | 67 | 37 | 46 |
P value = 0.139 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
EGFR MUTATED | 30 | 19 | 25 |
EGFR WILD-TYPE | 108 | 42 | 51 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
EGFR MUTATED | 13 | 33 | 26 |
EGFR WILD-TYPE | 91 | 74 | 36 |
P value = 0.00355 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
EGFR MUTATED | 9 | 8 | 19 | 3 |
EGFR WILD-TYPE | 24 | 11 | 23 | 30 |
P value = 0.256 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
EGFR MUTATED | 6 | 13 | 4 | 3 | 11 |
EGFR WILD-TYPE | 25 | 22 | 20 | 16 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
EGFR MUTATED | 11 | 4 | 22 |
EGFR WILD-TYPE | 47 | 40 | 20 |
P value = 0.0239 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
EGFR MUTATED | 8 | 22 | 15 |
EGFR WILD-TYPE | 37 | 41 | 18 |
P value = 0.00606 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
EGFR MUTATED | 3 | 32 | 10 |
EGFR WILD-TYPE | 28 | 54 | 14 |
P value = 0.731 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
TMPRSS6 MUTATED | 3 | 0 | 2 | 1 |
TMPRSS6 WILD-TYPE | 75 | 41 | 62 | 56 |
P value = 0.703 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TMPRSS6 MUTATED | 3 | 1 | 1 | 1 |
TMPRSS6 WILD-TYPE | 60 | 49 | 47 | 78 |
P value = 0.726 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
TMPRSS6 MUTATED | 2 | 1 | 1 | 2 |
TMPRSS6 WILD-TYPE | 68 | 97 | 43 | 61 |
P value = 0.263 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TMPRSS6 MUTATED | 2 | 3 | 1 |
TMPRSS6 WILD-TYPE | 136 | 58 | 75 |
P value = 0.583 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
TMPRSS6 MUTATED | 3 | 1 | 2 |
TMPRSS6 WILD-TYPE | 101 | 106 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
TMPRSS6 MUTATED | 1 | 0 | 1 | 1 |
TMPRSS6 WILD-TYPE | 32 | 19 | 41 | 32 |
P value = 0.905 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
TMPRSS6 MUTATED | 1 | 1 | 0 | 0 | 2 |
TMPRSS6 WILD-TYPE | 30 | 34 | 24 | 19 | 33 |
P value = 0.469 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
TMPRSS6 MUTATED | 2 | 0 | 2 |
TMPRSS6 WILD-TYPE | 56 | 44 | 40 |
P value = 0.572 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
TMPRSS6 MUTATED | 1 | 4 | 1 |
TMPRSS6 WILD-TYPE | 44 | 59 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TMPRSS6 MUTATED | 1 | 4 | 1 |
TMPRSS6 WILD-TYPE | 30 | 82 | 23 |
P value = 0.0817 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
PRKCD MUTATED | 0 | 2 | 1 | 0 |
PRKCD WILD-TYPE | 78 | 39 | 63 | 57 |
P value = 0.0851 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PRKCD MUTATED | 0 | 2 | 1 | 0 |
PRKCD WILD-TYPE | 63 | 48 | 47 | 79 |
P value = 0.235 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
PRKCD MUTATED | 0 | 3 | 0 | 0 |
PRKCD WILD-TYPE | 70 | 95 | 44 | 63 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PRKCD MUTATED | 2 | 0 | 1 |
PRKCD WILD-TYPE | 136 | 61 | 75 |
P value = 0.617 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
PRKCD MUTATED | 2 | 1 | 0 |
PRKCD WILD-TYPE | 102 | 106 | 62 |
P value = 0.93 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
TP63 MUTATED | 1 | 1 | 2 | 1 |
TP63 WILD-TYPE | 77 | 40 | 62 | 56 |
P value = 0.728 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TP63 MUTATED | 1 | 1 | 2 | 1 |
TP63 WILD-TYPE | 62 | 49 | 46 | 78 |
P value = 0.316 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
TP63 MUTATED | 2 | 1 | 0 | 3 |
TP63 WILD-TYPE | 68 | 97 | 44 | 60 |
P value = 0.648 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TP63 MUTATED | 2 | 2 | 2 |
TP63 WILD-TYPE | 136 | 59 | 74 |
P value = 0.763 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
TP63 MUTATED | 2 | 2 | 2 |
TP63 WILD-TYPE | 102 | 105 | 60 |
P value = 0.037 (Fisher's exact test), Q value = 0.29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
TP63 MUTATED | 2 | 0 | 0 | 2 | 0 |
TP63 WILD-TYPE | 29 | 35 | 24 | 17 | 35 |
P value = 0.388 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
TP63 MUTATED | 3 | 1 | 0 |
TP63 WILD-TYPE | 55 | 43 | 42 |
P value = 0.239 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
TP63 MUTATED | 0 | 1 | 2 |
TP63 WILD-TYPE | 45 | 62 | 31 |
P value = 0.109 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TP63 MUTATED | 0 | 1 | 2 |
TP63 WILD-TYPE | 31 | 85 | 22 |
P value = 0.00977 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
PDGFRA MUTATED | 2 | 6 | 1 | 1 |
PDGFRA WILD-TYPE | 76 | 35 | 63 | 56 |
P value = 0.148 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PDGFRA MUTATED | 1 | 5 | 2 | 2 |
PDGFRA WILD-TYPE | 62 | 45 | 46 | 77 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
PDGFRA MUTATED | 3 | 4 | 2 | 2 |
PDGFRA WILD-TYPE | 67 | 94 | 42 | 61 |
P value = 0.14 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PDGFRA MUTATED | 9 | 1 | 1 |
PDGFRA WILD-TYPE | 129 | 60 | 75 |
P value = 0.496 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
PDGFRA MUTATED | 4 | 6 | 1 |
PDGFRA WILD-TYPE | 100 | 101 | 61 |
P value = 0.214 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
PDGFRA MUTATED | 0 | 2 | 1 | 2 |
PDGFRA WILD-TYPE | 33 | 17 | 41 | 31 |
P value = 0.3 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
PDGFRA MUTATED | 0 | 3 | 0 | 1 | 1 |
PDGFRA WILD-TYPE | 31 | 32 | 24 | 18 | 34 |
P value = 0.732 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
PDGFRA MUTATED | 3 | 1 | 1 |
PDGFRA WILD-TYPE | 55 | 43 | 41 |
P value = 0.0269 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
PDGFRA MUTATED | 5 | 1 | 0 |
PDGFRA WILD-TYPE | 40 | 62 | 33 |
P value = 0.00491 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PDGFRA MUTATED | 5 | 1 | 0 |
PDGFRA WILD-TYPE | 26 | 85 | 24 |
P value = 0.775 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
CHD8 MUTATED | 3 | 2 | 1 | 2 |
CHD8 WILD-TYPE | 75 | 39 | 63 | 55 |
P value = 0.532 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
CHD8 MUTATED | 2 | 2 | 0 | 4 |
CHD8 WILD-TYPE | 61 | 48 | 48 | 75 |
P value = 0.172 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
CHD8 MUTATED | 0 | 3 | 3 | 2 |
CHD8 WILD-TYPE | 70 | 95 | 41 | 61 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
CHD8 MUTATED | 5 | 2 | 1 |
CHD8 WILD-TYPE | 133 | 59 | 75 |
P value = 0.233 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
CHD8 MUTATED | 5 | 4 | 0 |
CHD8 WILD-TYPE | 99 | 103 | 62 |
P value = 0.311 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
CHD8 MUTATED | 1 | 1 | 4 | 1 | 2 |
CHD8 WILD-TYPE | 30 | 34 | 20 | 18 | 33 |
P value = 0.915 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
CHD8 MUTATED | 3 | 3 | 3 |
CHD8 WILD-TYPE | 55 | 41 | 39 |
P value = 0.269 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
CHD8 MUTATED | 2 | 1 | 3 |
CHD8 WILD-TYPE | 43 | 62 | 30 |
P value = 0.612 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
CHD8 MUTATED | 2 | 4 | 0 |
CHD8 WILD-TYPE | 29 | 82 | 24 |
P value = 0.846 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
IL4R MUTATED | 1 | 1 | 2 | 2 |
IL4R WILD-TYPE | 77 | 40 | 62 | 55 |
P value = 0.388 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
IL4R MUTATED | 0 | 1 | 2 | 3 |
IL4R WILD-TYPE | 63 | 49 | 46 | 76 |
P value = 0.744 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
IL4R MUTATED | 1 | 3 | 2 | 2 |
IL4R WILD-TYPE | 69 | 95 | 42 | 61 |
P value = 0.805 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
IL4R MUTATED | 4 | 1 | 3 |
IL4R WILD-TYPE | 134 | 60 | 73 |
P value = 0.53 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
IL4R MUTATED | 3 | 2 | 3 |
IL4R WILD-TYPE | 101 | 105 | 59 |
P value = 0.447 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
IL4R MUTATED | 0 | 1 | 3 | 1 |
IL4R WILD-TYPE | 33 | 18 | 39 | 32 |
P value = 0.227 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
IL4R MUTATED | 1 | 2 | 3 | 1 | 0 |
IL4R WILD-TYPE | 30 | 33 | 21 | 18 | 35 |
P value = 0.886 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
IL4R MUTATED | 2 | 3 | 2 |
IL4R WILD-TYPE | 56 | 41 | 40 |
P value = 0.45 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
IL4R MUTATED | 1 | 1 | 2 |
IL4R WILD-TYPE | 44 | 62 | 31 |
P value = 0.8 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
IL4R MUTATED | 1 | 2 | 1 |
IL4R WILD-TYPE | 30 | 84 | 23 |
P value = 0.302 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
REN MUTATED | 0 | 0 | 2 | 1 |
REN WILD-TYPE | 78 | 41 | 62 | 56 |
P value = 0.414 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
REN MUTATED | 0 | 0 | 1 | 2 |
REN WILD-TYPE | 63 | 50 | 47 | 77 |
P value = 0.069 (Fisher's exact test), Q value = 0.44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
REN MUTATED | 1 | 1 | 3 | 0 |
REN WILD-TYPE | 69 | 97 | 41 | 63 |
P value = 0.513 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
REN MUTATED | 4 | 0 | 1 |
REN WILD-TYPE | 134 | 61 | 75 |
P value = 0.742 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
REN MUTATED | 3 | 1 | 1 |
REN WILD-TYPE | 101 | 106 | 61 |
P value = 0.553 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
REN MUTATED | 2 | 0 | 1 | 0 | 1 |
REN WILD-TYPE | 29 | 35 | 23 | 19 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
REN MUTATED | 2 | 1 | 1 |
REN WILD-TYPE | 56 | 43 | 41 |
P value = 0.832 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
CD209 MUTATED | 1 | 0 | 2 | 1 |
CD209 WILD-TYPE | 77 | 41 | 62 | 56 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
CD209 MUTATED | 1 | 1 | 1 | 1 |
CD209 WILD-TYPE | 62 | 49 | 47 | 78 |
P value = 0.328 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
CD209 MUTATED | 1 | 1 | 0 | 3 |
CD209 WILD-TYPE | 69 | 97 | 44 | 60 |
P value = 0.609 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
CD209 MUTATED | 3 | 0 | 2 |
CD209 WILD-TYPE | 135 | 61 | 74 |
P value = 0.838 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
CD209 MUTATED | 2 | 1 | 1 |
CD209 WILD-TYPE | 102 | 106 | 61 |
P value = 0.904 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
CD209 MUTATED | 1 | 1 | 0 | 0 | 2 |
CD209 WILD-TYPE | 30 | 34 | 24 | 19 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
CD209 MUTATED | 2 | 1 | 1 |
CD209 WILD-TYPE | 56 | 43 | 41 |
P value = 0.348 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
FBN3 MUTATED | 2 | 1 | 5 | 1 |
FBN3 WILD-TYPE | 76 | 40 | 59 | 56 |
P value = 0.308 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
FBN3 MUTATED | 1 | 2 | 4 | 2 |
FBN3 WILD-TYPE | 62 | 48 | 44 | 77 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
FBN3 MUTATED | 3 | 4 | 2 | 2 |
FBN3 WILD-TYPE | 67 | 94 | 42 | 61 |
P value = 0.921 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
FBN3 MUTATED | 5 | 3 | 3 |
FBN3 WILD-TYPE | 133 | 58 | 73 |
P value = 0.088 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
FBN3 MUTATED | 1 | 7 | 3 |
FBN3 WILD-TYPE | 103 | 100 | 59 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
FBN3 MUTATED | 1 | 1 | 2 | 2 |
FBN3 WILD-TYPE | 32 | 18 | 40 | 31 |
P value = 0.0197 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
FBN3 MUTATED | 0 | 0 | 2 | 3 | 1 |
FBN3 WILD-TYPE | 31 | 35 | 22 | 16 | 34 |
P value = 0.664 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
FBN3 MUTATED | 2 | 3 | 1 |
FBN3 WILD-TYPE | 56 | 41 | 41 |
P value = 0.854 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
FBN3 MUTATED | 1 | 3 | 1 |
FBN3 WILD-TYPE | 44 | 60 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
FBN3 MUTATED | 1 | 3 | 1 |
FBN3 WILD-TYPE | 30 | 83 | 23 |
P value = 0.832 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
MMP13 MUTATED | 1 | 0 | 2 | 1 |
MMP13 WILD-TYPE | 77 | 41 | 62 | 56 |
P value = 0.22 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
MMP13 MUTATED | 1 | 1 | 2 | 0 |
MMP13 WILD-TYPE | 62 | 49 | 46 | 79 |
P value = 0.762 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
MMP13 MUTATED | 1 | 2 | 0 | 2 |
MMP13 WILD-TYPE | 69 | 96 | 44 | 61 |
P value = 0.0493 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
MMP13 MUTATED | 1 | 0 | 4 |
MMP13 WILD-TYPE | 137 | 61 | 72 |
P value = 0.204 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
MMP13 MUTATED | 1 | 1 | 3 |
MMP13 WILD-TYPE | 103 | 106 | 59 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
TCF12 MUTATED | 1 | 0 | 1 | 1 |
TCF12 WILD-TYPE | 77 | 41 | 63 | 56 |
P value = 0.481 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TCF12 MUTATED | 1 | 1 | 1 | 0 |
TCF12 WILD-TYPE | 62 | 49 | 47 | 79 |
P value = 0.587 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
TCF12 MUTATED | 2 | 2 | 0 | 0 |
TCF12 WILD-TYPE | 68 | 96 | 44 | 63 |
P value = 0.257 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TCF12 MUTATED | 2 | 2 | 0 |
TCF12 WILD-TYPE | 136 | 59 | 76 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
TCF12 MUTATED | 1 | 1 | 1 |
TCF12 WILD-TYPE | 103 | 106 | 61 |
P value = 0.0748 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
TCF12 MUTATED | 0 | 3 | 0 | 1 | 0 |
TCF12 WILD-TYPE | 31 | 32 | 24 | 18 | 35 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
TCF12 MUTATED | 2 | 1 | 1 |
TCF12 WILD-TYPE | 56 | 43 | 41 |
P value = 0.804 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
LZTR1 MUTATED | 2 | 2 | 1 | 2 |
LZTR1 WILD-TYPE | 76 | 39 | 63 | 55 |
P value = 0.516 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
LZTR1 MUTATED | 3 | 2 | 0 | 2 |
LZTR1 WILD-TYPE | 60 | 48 | 48 | 77 |
P value = 0.467 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
LZTR1 MUTATED | 4 | 4 | 0 | 2 |
LZTR1 WILD-TYPE | 66 | 94 | 44 | 61 |
P value = 0.702 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
LZTR1 MUTATED | 4 | 3 | 3 |
LZTR1 WILD-TYPE | 134 | 58 | 73 |
P value = 0.372 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
LZTR1 MUTATED | 2 | 6 | 1 |
LZTR1 WILD-TYPE | 102 | 101 | 61 |
P value = 0.336 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
LZTR1 MUTATED | 2 | 1 | 0 | 1 |
LZTR1 WILD-TYPE | 31 | 18 | 42 | 32 |
P value = 0.2 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
LZTR1 MUTATED | 3 | 0 | 1 | 2 | 1 |
LZTR1 WILD-TYPE | 28 | 35 | 23 | 17 | 34 |
P value = 0.563 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
LZTR1 MUTATED | 4 | 1 | 2 |
LZTR1 WILD-TYPE | 54 | 43 | 40 |
P value = 0.168 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
LZTR1 MUTATED | 2 | 0 | 1 |
LZTR1 WILD-TYPE | 43 | 63 | 32 |
P value = 0.751 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
LZTR1 MUTATED | 0 | 3 | 0 |
LZTR1 WILD-TYPE | 31 | 83 | 24 |
P value = 0.236 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
ZDHHC4 MUTATED | 0 | 3 | 0 | 0 |
ZDHHC4 WILD-TYPE | 70 | 95 | 44 | 63 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
ZDHHC4 MUTATED | 2 | 0 | 1 |
ZDHHC4 WILD-TYPE | 136 | 61 | 75 |
P value = 0.183 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
ZDHHC4 MUTATED | 0 | 3 | 0 |
ZDHHC4 WILD-TYPE | 104 | 104 | 62 |
P value = 0.072 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
IL18RAP MUTATED | 0 | 3 | 2 | 1 |
IL18RAP WILD-TYPE | 78 | 38 | 62 | 56 |
P value = 0.226 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
IL18RAP MUTATED | 0 | 3 | 1 | 2 |
IL18RAP WILD-TYPE | 63 | 47 | 47 | 77 |
P value = 0.0066 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
IL18RAP MUTATED | 0 | 7 | 0 | 0 |
IL18RAP WILD-TYPE | 70 | 91 | 44 | 63 |
P value = 0.175 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
IL18RAP MUTATED | 3 | 0 | 4 |
IL18RAP WILD-TYPE | 135 | 61 | 72 |
P value = 0.485 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
IL18RAP MUTATED | 1 | 4 | 2 |
IL18RAP WILD-TYPE | 103 | 103 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
IL18RAP MUTATED | 1 | 0 | 1 | 1 |
IL18RAP WILD-TYPE | 32 | 19 | 41 | 32 |
P value = 0.366 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
IL18RAP MUTATED | 0 | 1 | 1 | 2 | 1 |
IL18RAP WILD-TYPE | 31 | 34 | 23 | 17 | 34 |
P value = 0.614 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
IL18RAP MUTATED | 1 | 2 | 2 |
IL18RAP WILD-TYPE | 57 | 42 | 40 |
P value = 0.685 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
IL18RAP MUTATED | 2 | 2 | 0 |
IL18RAP WILD-TYPE | 43 | 61 | 33 |
P value = 0.338 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
IL18RAP MUTATED | 2 | 2 | 0 |
IL18RAP WILD-TYPE | 29 | 84 | 24 |
P value = 0.876 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
ODF4 MUTATED | 1 | 1 | 1 | 0 |
ODF4 WILD-TYPE | 77 | 40 | 63 | 57 |
P value = 0.35 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
ODF4 MUTATED | 2 | 1 | 0 | 0 |
ODF4 WILD-TYPE | 61 | 49 | 48 | 79 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
ODF4 MUTATED | 1 | 1 | 0 | 1 |
ODF4 WILD-TYPE | 69 | 97 | 44 | 62 |
P value = 0.195 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
ODF4 MUTATED | 1 | 2 | 0 |
ODF4 WILD-TYPE | 137 | 59 | 76 |
P value = 0.794 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
ODF4 MUTATED | 1 | 2 | 0 |
ODF4 WILD-TYPE | 103 | 105 | 62 |
P value = 0.293 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
KEL MUTATED | 3 | 3 | 7 | 2 |
KEL WILD-TYPE | 75 | 38 | 57 | 55 |
P value = 0.209 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
KEL MUTATED | 3 | 1 | 6 | 5 |
KEL WILD-TYPE | 60 | 49 | 42 | 74 |
P value = 0.835 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
KEL MUTATED | 3 | 5 | 2 | 5 |
KEL WILD-TYPE | 67 | 93 | 42 | 58 |
P value = 0.886 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
KEL MUTATED | 7 | 3 | 5 |
KEL WILD-TYPE | 131 | 58 | 71 |
P value = 0.115 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
KEL MUTATED | 2 | 8 | 5 |
KEL WILD-TYPE | 102 | 99 | 57 |
P value = 0.184 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
KEL MUTATED | 0 | 0 | 4 | 1 |
KEL WILD-TYPE | 33 | 19 | 38 | 32 |
P value = 0.675 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
KEL MUTATED | 2 | 2 | 1 | 3 | 2 |
KEL WILD-TYPE | 29 | 33 | 23 | 16 | 33 |
P value = 0.597 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
KEL MUTATED | 4 | 2 | 4 |
KEL WILD-TYPE | 54 | 42 | 38 |
P value = 0.485 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
KEL MUTATED | 5 | 3 | 2 |
KEL WILD-TYPE | 40 | 60 | 31 |
P value = 0.649 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
KEL MUTATED | 3 | 5 | 2 |
KEL WILD-TYPE | 28 | 81 | 22 |
P value = 0.205 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
TESK1 MUTATED | 0 | 1 | 2 | 0 |
TESK1 WILD-TYPE | 78 | 40 | 62 | 57 |
P value = 0.698 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TESK1 MUTATED | 0 | 1 | 1 | 1 |
TESK1 WILD-TYPE | 63 | 49 | 47 | 78 |
P value = 0.392 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
TESK1 MUTATED | 1 | 0 | 1 | 1 |
TESK1 WILD-TYPE | 69 | 98 | 43 | 62 |
P value = 0.602 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TESK1 MUTATED | 2 | 1 | 0 |
TESK1 WILD-TYPE | 136 | 60 | 76 |
P value = 0.244 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
TESK1 MUTATED | 0 | 1 | 2 |
TESK1 WILD-TYPE | 104 | 106 | 60 |
P value = 0.0629 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
MUC17 MUTATED | 10 | 4 | 1 | 4 |
MUC17 WILD-TYPE | 68 | 37 | 63 | 53 |
P value = 0.193 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
MUC17 MUTATED | 8 | 1 | 3 | 7 |
MUC17 WILD-TYPE | 55 | 49 | 45 | 72 |
P value = 0.802 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
MUC17 MUTATED | 5 | 7 | 3 | 7 |
MUC17 WILD-TYPE | 65 | 91 | 41 | 56 |
P value = 0.703 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
MUC17 MUTATED | 10 | 4 | 8 |
MUC17 WILD-TYPE | 128 | 57 | 68 |
P value = 0.296 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
MUC17 MUTATED | 10 | 10 | 2 |
MUC17 WILD-TYPE | 94 | 97 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
MUC17 MUTATED | 3 | 1 | 3 | 3 |
MUC17 WILD-TYPE | 30 | 18 | 39 | 30 |
P value = 0.553 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
MUC17 MUTATED | 2 | 4 | 1 | 0 | 4 |
MUC17 WILD-TYPE | 29 | 31 | 23 | 19 | 31 |
P value = 0.0909 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
MUC17 MUTATED | 8 | 1 | 2 |
MUC17 WILD-TYPE | 50 | 43 | 40 |
P value = 0.927 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 45 | 63 | 33 |
MUC17 MUTATED | 4 | 6 | 2 |
MUC17 WILD-TYPE | 41 | 57 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
MUC17 MUTATED | 2 | 8 | 2 |
MUC17 WILD-TYPE | 29 | 78 | 22 |
P value = 0.24 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
FAM126B MUTATED | 1 | 0 | 3 | 0 |
FAM126B WILD-TYPE | 77 | 41 | 61 | 57 |
P value = 0.028 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
FAM126B MUTATED | 1 | 0 | 3 | 0 |
FAM126B WILD-TYPE | 62 | 50 | 45 | 79 |
P value = 0.587 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
FAM126B MUTATED | 2 | 2 | 0 | 0 |
FAM126B WILD-TYPE | 68 | 96 | 44 | 63 |
P value = 0.444 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
FAM126B MUTATED | 1 | 1 | 2 |
FAM126B WILD-TYPE | 137 | 60 | 74 |
P value = 0.55 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
FAM126B MUTATED | 1 | 1 | 2 |
FAM126B WILD-TYPE | 103 | 106 | 60 |
P value = 0.683 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 19 | 42 | 33 |
FAM126B MUTATED | 1 | 1 | 2 | 0 |
FAM126B WILD-TYPE | 32 | 18 | 40 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 31 | 35 | 24 | 19 | 35 |
FAM126B MUTATED | 1 | 1 | 0 | 0 | 1 |
FAM126B WILD-TYPE | 30 | 34 | 24 | 19 | 34 |
P value = 0.63 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 58 | 44 | 42 |
FAM126B MUTATED | 2 | 0 | 1 |
FAM126B WILD-TYPE | 56 | 44 | 41 |
P value = 0.411 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 41 | 64 | 57 |
DDX5 MUTATED | 1 | 0 | 0 | 2 |
DDX5 WILD-TYPE | 77 | 41 | 64 | 55 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
DDX5 MUTATED | 1 | 1 | 0 | 1 |
DDX5 WILD-TYPE | 62 | 49 | 48 | 78 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 70 | 98 | 44 | 63 |
DDX5 MUTATED | 0 | 2 | 1 | 1 |
DDX5 WILD-TYPE | 70 | 96 | 43 | 62 |
P value = 0.447 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
DDX5 MUTATED | 1 | 1 | 2 |
DDX5 WILD-TYPE | 137 | 60 | 74 |
P value = 0.361 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 107 | 62 |
DDX5 MUTATED | 3 | 1 | 0 |
DDX5 WILD-TYPE | 101 | 106 | 62 |
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Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
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Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/22811914/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/22555065/GBM-TP.transferedmergedcluster.txt
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Number of patients = 283
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Number of significantly mutated genes = 36
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Number of Molecular subtypes = 10
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.