GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val KEGG_AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM 43 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM 0.55347 1.8349 0.008048 0.72217 0.472 0.698 0.331 0.468 0 0.164 BIOCARTA_HIVNEF_PATHWAY 58 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_HIVNEF_PATHWAY 0.43514 1.7668 0.01597 0.63857 0.636 0.31 0.194 0.251 0.22928 0.156 BIOCARTA_IL2RB_PATHWAY 38 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_IL2RB_PATHWAY 0.63567 1.6564 0.02024 0.50039 0.854 0.395 0.141 0.34 0.23995 0.134 BIOCARTA_DEATH_PATHWAY 33 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_DEATH_PATHWAY 0.54998 1.7238 0.0125 0.41846 0.732 0.485 0.194 0.391 0.16197 0.092 ST_TUMOR_NECROSIS_FACTOR_PATHWAY 28 http://www.broadinstitute.org/gsea/msigdb/cards/ST_TUMOR_NECROSIS_FACTOR_PATHWAY 0.5703 1.7243 0.0214 0.45194 0.732 0.464 0.194 0.375 0.17433 0.097 PID_SYNDECAN_4_PATHWAY 28 http://www.broadinstitute.org/gsea/msigdb/cards/PID_SYNDECAN_4_PATHWAY 0.7102 1.7651 0.002 0.55318 0.636 0.679 0.221 0.529 0.19833 0.126 PID_HIVNEFPATHWAY 35 http://www.broadinstitute.org/gsea/msigdb/cards/PID_HIVNEFPATHWAY 0.5392 1.6997 0.02469 0.4123 0.784 0.4 0.194 0.323 0.17861 0.097 REACTOME_ANTIGEN_PROCESSING_CROSS_PRESENTATION 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ANTIGEN_PROCESSING_CROSS_PRESENTATION 0.56628 1.74 0.01 0.52938 0.697 0.639 0.295 0.452 0.19935 0.13 REACTOME_TRIF_MEDIATED_TLR3_SIGNALING 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TRIF_MEDIATED_TLR3_SIGNALING 0.42559 1.7257 0.02191 0.53546 0.731 0.347 0.217 0.273 0.20824 0.126 REACTOME_ACTIVATION_OF_CHAPERONE_GENES_BY_XBP1S 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATION_OF_CHAPERONE_GENES_BY_XBP1S 0.41748 1.6549 0.07722 0.4794 0.858 0.295 0.179 0.243 0.23262 0.12 REACTOME_UNFOLDED_PROTEIN_RESPONSE 76 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_UNFOLDED_PROTEIN_RESPONSE 0.40381 1.763 0.04618 0.4932 0.64 0.263 0.196 0.213 0.17563 0.109 REACTOME_INTERFERON_SIGNALING 141 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INTERFERON_SIGNALING 0.61004 1.8237 0.01188 0.60241 0.501 0.454 0.186 0.373 0.16525 0.143 REACTOME_NFKB_AND_MAP_KINASES_ACTIVATION_MEDIATED_BY_TLR4_SIGNALING_REPERTOIRE 70 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NFKB_AND_MAP_KINASES_ACTIVATION_MEDIATED_BY_TLR4_SIGNALING_REPERTOIRE 0.41963 1.7031 0.03762 0.42738 0.777 0.314 0.217 0.247 0.18624 0.099 REACTOME_RIG_I_MDA5_MEDIATED_INDUCTION_OF_IFN_ALPHA_BETA_PATHWAYS 60 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RIG_I_MDA5_MEDIATED_INDUCTION_OF_IFN_ALPHA_BETA_PATHWAYS 0.55293 1.9262 0.001957 0.90897 0.27 0.45 0.205 0.359 0 0.187 REACTOME_INNATE_IMMUNE_SYSTEM 211 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_INNATE_IMMUNE_SYSTEM 0.55122 1.7144 0.01232 0.41562 0.752 0.498 0.218 0.394 0.17134 0.092 REACTOME_ACTIVATED_TLR4_SIGNALLING 91 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ACTIVATED_TLR4_SIGNALLING 0.44048 1.7243 0.0239 0.49291 0.732 0.374 0.217 0.294 0.19018 0.111 REACTOME_TOLL_RECEPTOR_CASCADES 114 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TOLL_RECEPTOR_CASCADES 0.47702 1.6491 0.03484 0.47439 0.874 0.43 0.217 0.339 0.22627 0.121 REACTOME_NOD1_2_SIGNALING_PATHWAY 30 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NOD1_2_SIGNALING_PATHWAY 0.67292 1.9001 0 0.58692 0.327 0.333 0.0859 0.305 0 0.138 REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM 244 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM 0.5767 1.8055 0.006073 0.5631 0.544 0.418 0.186 0.345 0.18005 0.126 REACTOME_NUCLEOTIDE_BINDING_DOMAIN_LEUCINE_RICH_REPEAT_CONTAINING_RECEPTOR_NLR_SIGNALING_PATHWAYS 45 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NUCLEOTIDE_BINDING_DOMAIN_LEUCINE_RICH_REPEAT_CONTAINING_RECEPTOR_NLR_SIGNALING_PATHWAYS 0.58796 1.6574 0.02439 0.52584 0.853 0.333 0.115 0.296 0.24589 0.143