This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 63 arm-level events and 10 molecular subtypes across 66 patients, 185 significant findings detected with P value < 0.05 and Q value < 0.25.
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3p gain cnv correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.
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3q gain cnv correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.
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4p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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7q gain cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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8p gain cnv correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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11q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p gain cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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12q gain cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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14q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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16p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p gain cnv correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19q gain cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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22q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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3q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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6p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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9q loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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10p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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17p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q loss cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
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19q loss cnv correlated to 'MRNASEQ_CNMF'.
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21q loss cnv correlated to 'METHLYATION_CNMF'.
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22q loss cnv correlated to 'METHLYATION_CNMF'.
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xp loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
1p loss | 53 (80%) | 13 |
0.414 (0.651) |
1e-05 (0.000233) |
0.719 (0.863) |
0.596 (0.805) |
0.00027 (0.00298) |
0.00028 (0.00304) |
0.396 (0.638) |
0.00123 (0.00993) |
0.00048 (0.00451) |
0.00204 (0.0144) |
1q loss | 51 (77%) | 15 |
0.542 (0.773) |
1e-05 (0.000233) |
0.217 (0.453) |
0.336 (0.583) |
2e-05 (0.000371) |
6e-05 (0.000969) |
0.269 (0.512) |
0.00031 (0.0032) |
0.0048 (0.0317) |
0.0119 (0.0619) |
2p loss | 46 (70%) | 20 |
0.712 (0.863) |
1e-05 (0.000233) |
0.126 (0.328) |
0.512 (0.745) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.45 (0.683) |
2e-05 (0.000371) |
1e-05 (0.000233) |
0.00041 (0.00391) |
2q loss | 46 (70%) | 20 |
0.71 (0.863) |
1e-05 (0.000233) |
0.127 (0.328) |
0.511 (0.745) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.453 (0.686) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.00051 (0.00472) |
6p loss | 51 (77%) | 15 |
0.624 (0.81) |
1e-05 (0.000233) |
0.161 (0.378) |
0.105 (0.29) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.609 (0.805) |
0.00133 (0.0105) |
0.00026 (0.00298) |
7e-05 (0.00108) |
6q loss | 51 (77%) | 15 |
0.624 (0.81) |
1e-05 (0.000233) |
0.16 (0.377) |
0.105 (0.29) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.609 (0.805) |
0.00129 (0.0103) |
0.00015 (0.00193) |
0.00012 (0.00161) |
10p loss | 48 (73%) | 18 |
0.595 (0.805) |
3e-05 (0.000525) |
0.0883 (0.251) |
0.107 (0.293) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.595 (0.805) |
0.00022 (0.00267) |
0.00159 (0.0121) |
0.00726 (0.0436) |
10q loss | 49 (74%) | 17 |
0.423 (0.661) |
2e-05 (0.000371) |
0.175 (0.399) |
0.238 (0.48) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.569 (0.786) |
0.00036 (0.00359) |
0.00543 (0.0345) |
0.00178 (0.0132) |
17p loss | 50 (76%) | 16 |
0.568 (0.786) |
1e-05 (0.000233) |
0.14 (0.343) |
0.0688 (0.214) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.31 (0.552) |
5e-05 (0.000829) |
7e-05 (0.00108) |
0.0011 (0.00912) |
17q loss | 50 (76%) | 16 |
0.569 (0.786) |
1e-05 (0.000233) |
0.141 (0.344) |
0.0688 (0.214) |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.309 (0.552) |
8e-05 (0.00117) |
0.0001 (0.00137) |
0.00121 (0.0099) |
xp loss | 38 (58%) | 28 |
0.901 (0.97) |
0.00026 (0.00298) |
0.69 (0.855) |
0.722 (0.863) |
0.0003 (0.00315) |
0.00027 (0.00298) |
0.33 (0.575) |
3e-05 (0.000525) |
2e-05 (0.000371) |
0.011 (0.0587) |
xq loss | 38 (58%) | 28 |
1 (1.00) |
0.00158 (0.0121) |
0.691 (0.855) |
0.719 (0.863) |
0.00087 (0.00751) |
0.00144 (0.0112) |
0.653 (0.826) |
0.00083 (0.00726) |
8e-05 (0.00117) |
0.0498 (0.17) |
4p gain | 23 (35%) | 43 |
0.903 (0.971) |
0.643 (0.826) |
0.507 (0.745) |
0.174 (0.397) |
0.00103 (0.00865) |
0.00037 (0.00359) |
1 (1.00) |
0.0137 (0.0697) |
0.0103 (0.0557) |
0.00366 (0.0245) |
4q gain | 24 (36%) | 42 |
0.81 (0.918) |
0.805 (0.917) |
0.344 (0.585) |
0.15 (0.357) |
0.0001 (0.00137) |
9e-05 (0.00129) |
0.951 (0.997) |
0.00908 (0.0502) |
0.0115 (0.0607) |
0.0152 (0.0737) |
16p gain | 22 (33%) | 44 |
1 (1.00) |
0.799 (0.915) |
0.492 (0.732) |
0.295 (0.55) |
0.00161 (0.0121) |
0.00054 (0.00486) |
0.656 (0.826) |
0.00583 (0.036) |
0.00567 (0.0354) |
0.00906 (0.0502) |
16q gain | 21 (32%) | 45 |
1 (1.00) |
0.943 (0.992) |
0.264 (0.506) |
0.364 (0.608) |
0.00037 (0.00359) |
0.00014 (0.00184) |
0.401 (0.642) |
0.00515 (0.0331) |
0.0019 (0.0138) |
0.00547 (0.0345) |
18p gain | 17 (26%) | 49 |
1 (1.00) |
0.721 (0.863) |
0.761 (0.893) |
0.652 (0.826) |
0.0217 (0.0899) |
0.0129 (0.066) |
1 (1.00) |
0.048 (0.167) |
0.00247 (0.0171) |
0.0128 (0.066) |
8p loss | 10 (15%) | 56 |
2e-05 (0.000371) |
0.0216 (0.0899) |
0.0244 (0.0972) |
0.0269 (0.105) |
0.345 (0.585) |
0.0765 (0.228) |
0.146 (0.35) |
0.547 (0.774) |
0.215 (0.452) |
0.0191 (0.0845) |
13q loss | 43 (65%) | 23 |
0.375 (0.623) |
0.00027 (0.00298) |
0.295 (0.55) |
0.0521 (0.175) |
0.00016 (0.00202) |
4e-05 (0.000681) |
0.0823 (0.24) |
0.198 (0.439) |
0.00089 (0.00758) |
0.00766 (0.0443) |
11q gain | 15 (23%) | 51 |
1 (1.00) |
0.868 (0.949) |
0.215 (0.452) |
0.0879 (0.251) |
2e-05 (0.000371) |
2e-05 (0.000371) |
0.748 (0.889) |
0.02 (0.0862) |
0.0904 (0.254) |
0.0257 (0.101) |
18q gain | 16 (24%) | 50 |
0.874 (0.952) |
0.935 (0.992) |
0.929 (0.992) |
0.555 (0.78) |
0.0498 (0.17) |
0.0198 (0.0862) |
1 (1.00) |
0.0506 (0.171) |
0.00188 (0.0138) |
0.0162 (0.0767) |
20p gain | 22 (33%) | 44 |
0.721 (0.863) |
0.711 (0.863) |
0.166 (0.385) |
0.0657 (0.208) |
0.0175 (0.081) |
0.0238 (0.0957) |
0.429 (0.661) |
0.0224 (0.0922) |
0.0152 (0.0737) |
0.203 (0.441) |
20q gain | 22 (33%) | 44 |
0.722 (0.863) |
0.714 (0.863) |
0.167 (0.385) |
0.0665 (0.208) |
0.0182 (0.0836) |
0.0235 (0.0954) |
0.427 (0.661) |
0.0216 (0.0899) |
0.0153 (0.0737) |
0.201 (0.439) |
xp gain | 8 (12%) | 58 |
0.773 (0.898) |
0.306 (0.552) |
0.403 (0.644) |
0.384 (0.628) |
0.00761 (0.0443) |
0.0196 (0.086) |
0.0752 (0.228) |
0.0838 (0.241) |
0.00734 (0.0436) |
0.0308 (0.118) |
xq gain | 8 (12%) | 58 |
0.772 (0.898) |
0.306 (0.552) |
0.406 (0.645) |
0.385 (0.628) |
0.00782 (0.0448) |
0.0185 (0.0845) |
0.0757 (0.228) |
0.0839 (0.241) |
0.00795 (0.0451) |
0.0321 (0.121) |
5p loss | 10 (15%) | 56 |
0.00807 (0.0454) |
0.21 (0.448) |
1 (1.00) |
0.822 (0.922) |
0.0144 (0.0719) |
0.019 (0.0845) |
0.227 (0.465) |
0.0148 (0.0728) |
0.384 (0.628) |
0.649 (0.826) |
5q loss | 10 (15%) | 56 |
0.0068 (0.0412) |
0.21 (0.448) |
1 (1.00) |
0.822 (0.922) |
0.0147 (0.0728) |
0.0191 (0.0845) |
0.23 (0.47) |
0.0143 (0.0719) |
0.381 (0.628) |
0.652 (0.826) |
8q gain | 17 (26%) | 49 |
0.24 (0.482) |
0.145 (0.35) |
0.39 (0.63) |
0.13 (0.329) |
0.0337 (0.126) |
0.0307 (0.118) |
0.444 (0.678) |
0.121 (0.322) |
0.00961 (0.0526) |
0.0553 (0.183) |
11p gain | 15 (23%) | 51 |
1 (1.00) |
0.87 (0.95) |
0.561 (0.785) |
0.0889 (0.251) |
0.00052 (0.00475) |
0.0003 (0.00315) |
0.83 (0.924) |
0.0275 (0.106) |
0.337 (0.583) |
0.0528 (0.176) |
12q gain | 20 (30%) | 46 |
1 (1.00) |
0.519 (0.754) |
0.787 (0.905) |
0.413 (0.651) |
0.0331 (0.124) |
0.0837 (0.241) |
0.943 (0.992) |
0.0317 (0.12) |
0.00082 (0.00726) |
0.177 (0.401) |
14q gain | 21 (32%) | 45 |
1 (1.00) |
0.944 (0.992) |
0.2 (0.439) |
0.293 (0.55) |
0.0167 (0.0787) |
0.00483 (0.0317) |
0.767 (0.898) |
0.0586 (0.193) |
0.0214 (0.0899) |
0.0661 (0.208) |
19p gain | 20 (30%) | 46 |
0.711 (0.863) |
0.225 (0.465) |
0.0699 (0.216) |
0.0264 (0.103) |
0.0192 (0.0845) |
0.0227 (0.0929) |
0.881 (0.957) |
0.13 (0.329) |
0.356 (0.598) |
0.607 (0.805) |
22q gain | 19 (29%) | 47 |
1 (1.00) |
0.541 (0.773) |
0.254 (0.499) |
0.243 (0.487) |
0.335 (0.583) |
0.362 (0.607) |
0.481 (0.716) |
0.0238 (0.0957) |
0.00993 (0.0539) |
0.00227 (0.0159) |
8q loss | 9 (14%) | 57 |
0.00019 (0.00235) |
0.017 (0.0793) |
0.0704 (0.216) |
0.082 (0.24) |
0.586 (0.802) |
0.12 (0.322) |
0.249 (0.494) |
0.587 (0.802) |
0.216 (0.453) |
0.0187 (0.0845) |
16q loss | 5 (8%) | 61 |
0.48 (0.716) |
0.434 (0.667) |
0.853 (0.938) |
0.226 (0.465) |
0.0347 (0.128) |
0.00749 (0.0441) |
0.276 (0.523) |
0.0497 (0.17) |
0.539 (0.773) |
0.657 (0.826) |
3p gain | 8 (12%) | 58 |
0.26 (0.501) |
0.507 (0.745) |
0.46 (0.694) |
0.0447 (0.157) |
0.839 (0.929) |
0.646 (0.826) |
0.204 (0.441) |
0.69 (0.855) |
0.0385 (0.139) |
0.625 (0.81) |
3q gain | 8 (12%) | 58 |
0.26 (0.501) |
0.506 (0.745) |
0.458 (0.691) |
0.0437 (0.155) |
0.841 (0.929) |
0.648 (0.826) |
0.205 (0.441) |
0.689 (0.855) |
0.039 (0.14) |
0.626 (0.81) |
8p gain | 16 (24%) | 50 |
0.329 (0.575) |
0.131 (0.329) |
0.382 (0.628) |
0.149 (0.357) |
0.0915 (0.256) |
0.0772 (0.228) |
0.305 (0.552) |
0.144 (0.349) |
0.0207 (0.0888) |
0.0467 (0.163) |
19q gain | 18 (27%) | 48 |
1 (1.00) |
0.261 (0.502) |
0.109 (0.297) |
0.0734 (0.225) |
0.00357 (0.0242) |
0.0063 (0.0385) |
0.696 (0.856) |
0.146 (0.35) |
0.326 (0.572) |
0.506 (0.745) |
9p loss | 9 (14%) | 57 |
1 (1.00) |
0.906 (0.972) |
0.664 (0.833) |
0.811 (0.918) |
0.0117 (0.0612) |
0.00504 (0.0327) |
0.257 (0.499) |
0.547 (0.774) |
0.225 (0.465) |
0.998 (1.00) |
9q loss | 10 (15%) | 56 |
0.804 (0.917) |
0.829 (0.924) |
0.51 (0.745) |
0.55 (0.776) |
0.0209 (0.0889) |
0.0156 (0.0746) |
0.0766 (0.228) |
0.6 (0.805) |
0.708 (0.863) |
0.925 (0.991) |
18q loss | 9 (14%) | 57 |
0.13 (0.329) |
0.0406 (0.145) |
0.39 (0.63) |
0.407 (0.646) |
0.0364 (0.132) |
0.168 (0.386) |
0.583 (0.8) |
0.783 (0.902) |
0.122 (0.323) |
0.496 (0.736) |
7p gain | 24 (36%) | 42 |
0.571 (0.788) |
0.898 (0.968) |
0.0996 (0.276) |
0.135 (0.338) |
0.0768 (0.228) |
0.061 (0.197) |
0.844 (0.931) |
0.117 (0.316) |
0.0342 (0.127) |
0.14 (0.344) |
7q gain | 24 (36%) | 42 |
0.575 (0.791) |
0.896 (0.968) |
0.0959 (0.267) |
0.136 (0.338) |
0.0753 (0.228) |
0.0615 (0.198) |
0.84 (0.929) |
0.117 (0.316) |
0.0348 (0.128) |
0.142 (0.344) |
12p gain | 19 (29%) | 47 |
0.892 (0.968) |
0.737 (0.88) |
0.837 (0.929) |
0.463 (0.696) |
0.128 (0.329) |
0.159 (0.377) |
0.67 (0.837) |
0.0664 (0.208) |
0.00036 (0.00359) |
0.198 (0.439) |
3p loss | 9 (14%) | 57 |
0.605 (0.805) |
0.436 (0.668) |
0.817 (0.92) |
0.167 (0.385) |
0.127 (0.328) |
0.0027 (0.0185) |
0.428 (0.661) |
0.201 (0.439) |
0.668 (0.836) |
0.853 (0.938) |
3q loss | 8 (12%) | 58 |
0.425 (0.661) |
0.167 (0.385) |
0.896 (0.968) |
0.385 (0.628) |
0.0885 (0.251) |
0.00196 (0.014) |
0.306 (0.552) |
0.18 (0.407) |
0.309 (0.552) |
0.656 (0.826) |
19q loss | 3 (5%) | 63 |
1 (1.00) |
1 (1.00) |
0.613 (0.805) |
0.308 (0.552) |
0.05 (0.17) |
0.821 (0.922) |
1 (1.00) |
0.865 (0.948) |
0.778 (0.899) |
0.624 (0.81) |
21q loss | 35 (53%) | 31 |
0.402 (0.643) |
0.0355 (0.129) |
0.125 (0.328) |
0.188 (0.424) |
0.265 (0.506) |
0.195 (0.437) |
0.984 (1.00) |
0.127 (0.328) |
0.121 (0.322) |
0.225 (0.465) |
22q loss | 8 (12%) | 58 |
1 (1.00) |
0.0247 (0.0978) |
0.879 (0.957) |
1 (1.00) |
0.528 (0.765) |
0.233 (0.475) |
0.611 (0.805) |
0.213 (0.451) |
0.86 (0.943) |
0.316 (0.558) |
5p gain | 8 (12%) | 58 |
0.772 (0.898) |
0.797 (0.915) |
0.71 (0.863) |
0.199 (0.439) |
0.386 (0.628) |
0.446 (0.679) |
0.426 (0.661) |
0.0599 (0.195) |
0.311 (0.552) |
0.129 (0.329) |
5q gain | 8 (12%) | 58 |
0.773 (0.898) |
0.8 (0.915) |
0.709 (0.863) |
0.197 (0.439) |
0.386 (0.628) |
0.446 (0.679) |
0.427 (0.661) |
0.0602 (0.195) |
0.311 (0.552) |
0.129 (0.329) |
9p gain | 10 (15%) | 56 |
0.649 (0.826) |
0.563 (0.785) |
0.257 (0.499) |
0.234 (0.475) |
0.417 (0.655) |
0.813 (0.918) |
0.755 (0.89) |
0.602 (0.805) |
0.301 (0.552) |
0.304 (0.552) |
9q gain | 10 (15%) | 56 |
0.649 (0.826) |
0.562 (0.785) |
0.256 (0.499) |
0.235 (0.477) |
0.418 (0.655) |
0.813 (0.918) |
0.758 (0.891) |
0.597 (0.805) |
0.301 (0.552) |
0.305 (0.552) |
10p gain | 4 (6%) | 62 |
1 (1.00) |
0.285 (0.538) |
1 (1.00) |
0.55 (0.776) |
0.478 (0.716) |
0.205 (0.441) |
1 (1.00) |
0.167 (0.385) |
0.255 (0.499) |
0.777 (0.899) |
15q gain | 21 (32%) | 45 |
0.301 (0.552) |
0.943 (0.992) |
0.2 (0.439) |
0.297 (0.551) |
0.136 (0.338) |
0.0619 (0.198) |
0.945 (0.993) |
0.213 (0.451) |
0.288 (0.542) |
0.41 (0.649) |
21q gain | 4 (6%) | 62 |
1 (1.00) |
0.282 (0.533) |
0.556 (0.78) |
0.81 (0.918) |
0.339 (0.584) |
0.107 (0.292) |
0.675 (0.842) |
0.166 (0.385) |
0.758 (0.891) |
0.719 (0.863) |
11p loss | 7 (11%) | 59 |
0.753 (0.89) |
0.694 (0.856) |
0.533 (0.767) |
0.253 (0.499) |
0.344 (0.585) |
0.318 (0.559) |
0.345 (0.585) |
0.938 (0.992) |
0.937 (0.992) |
0.604 (0.805) |
11q loss | 7 (11%) | 59 |
0.753 (0.89) |
0.695 (0.856) |
0.53 (0.766) |
0.254 (0.499) |
0.341 (0.585) |
0.316 (0.558) |
0.347 (0.586) |
0.937 (0.992) |
0.939 (0.992) |
0.603 (0.805) |
16p loss | 3 (5%) | 63 |
0.602 (0.805) |
0.613 (0.805) |
0.35 (0.59) |
0.591 (0.805) |
0.248 (0.494) |
0.124 (0.326) |
0.752 (0.89) |
0.481 (0.716) |
0.781 (0.901) |
0.624 (0.81) |
18p loss | 7 (11%) | 59 |
0.381 (0.628) |
0.0514 (0.173) |
0.534 (0.767) |
0.512 (0.745) |
0.399 (0.641) |
0.14 (0.343) |
0.774 (0.898) |
0.938 (0.992) |
0.301 (0.552) |
0.825 (0.923) |
20p loss | 4 (6%) | 62 |
1 (1.00) |
0.567 (0.786) |
0.365 (0.608) |
0.338 (0.584) |
0.544 (0.773) |
0.215 (0.452) |
0.744 (0.886) |
0.657 (0.826) |
0.346 (0.586) |
0.541 (0.773) |
20q loss | 3 (5%) | 63 |
1 (1.00) |
0.249 (0.494) |
0.612 (0.805) |
0.59 (0.804) |
0.25 (0.494) |
0.0589 (0.193) |
0.645 (0.826) |
0.827 (0.924) |
0.0796 (0.234) |
0.624 (0.81) |
P value = 0.0447 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
3P GAIN MUTATED | 7 | 1 | 0 |
3P GAIN WILD-TYPE | 22 | 19 | 14 |
P value = 0.0385 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
3P GAIN MUTATED | 0 | 0 | 2 | 4 |
3P GAIN WILD-TYPE | 9 | 13 | 12 | 8 |
P value = 0.0437 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
3Q GAIN MUTATED | 7 | 1 | 0 |
3Q GAIN WILD-TYPE | 22 | 19 | 14 |
P value = 0.039 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
3Q GAIN MUTATED | 0 | 0 | 2 | 4 |
3Q GAIN WILD-TYPE | 9 | 13 | 12 | 8 |
P value = 0.00103 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
4P GAIN MUTATED | 4 | 12 | 1 | 1 | 2 | 0 | 3 |
4P GAIN WILD-TYPE | 13 | 3 | 4 | 5 | 12 | 4 | 2 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
4P GAIN MUTATED | 4 | 13 | 3 | 1 | 1 | 1 | 0 |
4P GAIN WILD-TYPE | 15 | 3 | 4 | 5 | 9 | 3 | 4 |
P value = 0.0137 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
4P GAIN MUTATED | 2 | 8 | 5 | 3 | 2 | 2 | 1 |
4P GAIN WILD-TYPE | 16 | 3 | 7 | 3 | 3 | 3 | 8 |
P value = 0.0103 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
4P GAIN MUTATED | 1 | 10 | 4 | 4 |
4P GAIN WILD-TYPE | 8 | 3 | 10 | 8 |
P value = 0.00366 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
4P GAIN MUTATED | 3 | 6 | 3 | 4 | 1 | 0 | 2 | 0 | 0 |
4P GAIN WILD-TYPE | 2 | 0 | 2 | 4 | 4 | 4 | 4 | 5 | 4 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
4Q GAIN MUTATED | 4 | 13 | 1 | 1 | 2 | 0 | 3 |
4Q GAIN WILD-TYPE | 13 | 2 | 4 | 5 | 12 | 4 | 2 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
4Q GAIN MUTATED | 4 | 14 | 3 | 1 | 1 | 1 | 0 |
4Q GAIN WILD-TYPE | 15 | 2 | 4 | 5 | 9 | 3 | 4 |
P value = 0.00908 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
4Q GAIN MUTATED | 2 | 8 | 5 | 3 | 3 | 2 | 1 |
4Q GAIN WILD-TYPE | 16 | 3 | 7 | 3 | 2 | 3 | 8 |
P value = 0.0115 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
4Q GAIN MUTATED | 1 | 10 | 4 | 5 |
4Q GAIN WILD-TYPE | 8 | 3 | 10 | 7 |
P value = 0.0152 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
4Q GAIN MUTATED | 3 | 6 | 3 | 4 | 1 | 0 | 2 | 1 | 0 |
4Q GAIN WILD-TYPE | 2 | 0 | 2 | 4 | 4 | 4 | 4 | 4 | 4 |
P value = 0.0342 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
7P GAIN MUTATED | 1 | 9 | 4 | 6 |
7P GAIN WILD-TYPE | 8 | 4 | 10 | 6 |
P value = 0.0348 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
7Q GAIN MUTATED | 1 | 9 | 4 | 6 |
7Q GAIN WILD-TYPE | 8 | 4 | 10 | 6 |
P value = 0.0207 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
8P GAIN MUTATED | 0 | 6 | 2 | 6 |
8P GAIN WILD-TYPE | 9 | 7 | 12 | 6 |
P value = 0.0467 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
8P GAIN MUTATED | 1 | 5 | 0 | 3 | 1 | 0 | 3 | 1 | 0 |
8P GAIN WILD-TYPE | 4 | 1 | 5 | 5 | 4 | 4 | 3 | 4 | 4 |
P value = 0.0337 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
8Q GAIN MUTATED | 2 | 9 | 1 | 1 | 2 | 0 | 2 |
8Q GAIN WILD-TYPE | 15 | 6 | 4 | 5 | 12 | 4 | 3 |
P value = 0.0307 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
8Q GAIN MUTATED | 2 | 9 | 3 | 1 | 2 | 0 | 0 |
8Q GAIN WILD-TYPE | 17 | 7 | 4 | 5 | 8 | 4 | 4 |
P value = 0.00961 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
8Q GAIN MUTATED | 0 | 7 | 2 | 6 |
8Q GAIN WILD-TYPE | 9 | 6 | 12 | 6 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
11P GAIN MUTATED | 1 | 10 | 0 | 1 | 1 | 0 | 2 |
11P GAIN WILD-TYPE | 16 | 5 | 5 | 5 | 13 | 4 | 3 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
11P GAIN MUTATED | 1 | 11 | 1 | 1 | 1 | 0 | 0 |
11P GAIN WILD-TYPE | 18 | 5 | 6 | 5 | 9 | 4 | 4 |
P value = 0.0275 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
11P GAIN MUTATED | 1 | 4 | 3 | 2 | 3 | 2 | 0 |
11P GAIN WILD-TYPE | 17 | 7 | 9 | 4 | 2 | 3 | 9 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
11Q GAIN MUTATED | 1 | 11 | 0 | 1 | 0 | 0 | 2 |
11Q GAIN WILD-TYPE | 16 | 4 | 5 | 5 | 14 | 4 | 3 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
11Q GAIN MUTATED | 1 | 12 | 1 | 1 | 0 | 0 | 0 |
11Q GAIN WILD-TYPE | 18 | 4 | 6 | 5 | 10 | 4 | 4 |
P value = 0.02 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
11Q GAIN MUTATED | 1 | 5 | 3 | 2 | 3 | 1 | 0 |
11Q GAIN WILD-TYPE | 17 | 6 | 9 | 4 | 2 | 4 | 9 |
P value = 0.0257 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
11Q GAIN MUTATED | 3 | 5 | 1 | 2 | 0 | 0 | 1 | 1 | 0 |
11Q GAIN WILD-TYPE | 2 | 1 | 4 | 6 | 5 | 4 | 5 | 4 | 4 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
12P GAIN MUTATED | 0 | 10 | 2 | 4 |
12P GAIN WILD-TYPE | 9 | 3 | 12 | 8 |
P value = 0.0331 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
12Q GAIN MUTATED | 4 | 10 | 0 | 2 | 3 | 0 | 1 |
12Q GAIN WILD-TYPE | 13 | 5 | 5 | 4 | 11 | 4 | 4 |
P value = 0.0317 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
12Q GAIN MUTATED | 1 | 7 | 4 | 1 | 2 | 2 | 3 |
12Q GAIN WILD-TYPE | 17 | 4 | 8 | 5 | 3 | 3 | 6 |
P value = 0.00082 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
12Q GAIN MUTATED | 0 | 10 | 3 | 5 |
12Q GAIN WILD-TYPE | 9 | 3 | 11 | 7 |
P value = 0.0167 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
14Q GAIN MUTATED | 4 | 11 | 1 | 1 | 3 | 0 | 1 |
14Q GAIN WILD-TYPE | 13 | 4 | 4 | 5 | 11 | 4 | 4 |
P value = 0.00483 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
14Q GAIN MUTATED | 4 | 12 | 1 | 1 | 2 | 1 | 0 |
14Q GAIN WILD-TYPE | 15 | 4 | 6 | 5 | 8 | 3 | 4 |
P value = 0.0214 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
14Q GAIN MUTATED | 1 | 9 | 3 | 4 |
14Q GAIN WILD-TYPE | 8 | 4 | 11 | 8 |
P value = 0.00161 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
16P GAIN MUTATED | 4 | 12 | 1 | 1 | 2 | 0 | 2 |
16P GAIN WILD-TYPE | 13 | 3 | 4 | 5 | 12 | 4 | 3 |
P value = 0.00054 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16P GAIN MUTATED | 4 | 13 | 2 | 1 | 1 | 1 | 0 |
16P GAIN WILD-TYPE | 15 | 3 | 5 | 5 | 9 | 3 | 4 |
P value = 0.00583 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
16P GAIN MUTATED | 2 | 7 | 5 | 3 | 3 | 2 | 0 |
16P GAIN WILD-TYPE | 16 | 4 | 7 | 3 | 2 | 3 | 9 |
P value = 0.00567 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
16P GAIN MUTATED | 1 | 10 | 3 | 4 |
16P GAIN WILD-TYPE | 8 | 3 | 11 | 8 |
P value = 0.00906 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
16P GAIN MUTATED | 3 | 6 | 3 | 3 | 1 | 0 | 1 | 1 | 0 |
16P GAIN WILD-TYPE | 2 | 0 | 2 | 5 | 4 | 4 | 5 | 4 | 4 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
16Q GAIN MUTATED | 4 | 12 | 1 | 1 | 1 | 0 | 2 |
16Q GAIN WILD-TYPE | 13 | 3 | 4 | 5 | 13 | 4 | 3 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16Q GAIN MUTATED | 4 | 13 | 2 | 1 | 0 | 1 | 0 |
16Q GAIN WILD-TYPE | 15 | 3 | 5 | 5 | 10 | 3 | 4 |
P value = 0.00515 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
16Q GAIN MUTATED | 2 | 7 | 5 | 3 | 3 | 1 | 0 |
16Q GAIN WILD-TYPE | 16 | 4 | 7 | 3 | 2 | 4 | 9 |
P value = 0.0019 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
16Q GAIN MUTATED | 1 | 10 | 2 | 4 |
16Q GAIN WILD-TYPE | 8 | 3 | 12 | 8 |
P value = 0.00547 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
16Q GAIN MUTATED | 3 | 6 | 3 | 2 | 1 | 0 | 1 | 1 | 0 |
16Q GAIN WILD-TYPE | 2 | 0 | 2 | 6 | 4 | 4 | 5 | 4 | 4 |
P value = 0.0217 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
18P GAIN MUTATED | 1 | 8 | 1 | 1 | 2 | 1 | 3 |
18P GAIN WILD-TYPE | 16 | 7 | 4 | 5 | 12 | 3 | 2 |
P value = 0.0129 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
18P GAIN MUTATED | 1 | 9 | 3 | 1 | 1 | 1 | 1 |
18P GAIN WILD-TYPE | 18 | 7 | 4 | 5 | 9 | 3 | 3 |
P value = 0.048 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
18P GAIN MUTATED | 1 | 6 | 2 | 3 | 1 | 1 | 3 |
18P GAIN WILD-TYPE | 17 | 5 | 10 | 3 | 4 | 4 | 6 |
P value = 0.00247 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
18P GAIN MUTATED | 1 | 9 | 1 | 4 |
18P GAIN WILD-TYPE | 8 | 4 | 13 | 8 |
P value = 0.0128 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
18P GAIN MUTATED | 3 | 5 | 2 | 1 | 0 | 0 | 3 | 0 | 1 |
18P GAIN WILD-TYPE | 2 | 1 | 3 | 7 | 5 | 4 | 3 | 5 | 3 |
P value = 0.0498 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
18Q GAIN MUTATED | 1 | 8 | 1 | 1 | 2 | 1 | 2 |
18Q GAIN WILD-TYPE | 16 | 7 | 4 | 5 | 12 | 3 | 3 |
P value = 0.0198 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
18Q GAIN MUTATED | 1 | 9 | 2 | 1 | 1 | 1 | 1 |
18Q GAIN WILD-TYPE | 18 | 7 | 5 | 5 | 9 | 3 | 3 |
P value = 0.00188 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
18Q GAIN MUTATED | 1 | 9 | 1 | 3 |
18Q GAIN WILD-TYPE | 8 | 4 | 13 | 9 |
P value = 0.0162 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
18Q GAIN MUTATED | 3 | 5 | 2 | 1 | 0 | 0 | 2 | 0 | 1 |
18Q GAIN WILD-TYPE | 2 | 1 | 3 | 7 | 5 | 4 | 4 | 5 | 3 |
P value = 0.0264 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
19P GAIN MUTATED | 13 | 2 | 5 |
19P GAIN WILD-TYPE | 16 | 18 | 9 |
P value = 0.0192 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
19P GAIN MUTATED | 3 | 10 | 1 | 0 | 5 | 0 | 1 |
19P GAIN WILD-TYPE | 14 | 5 | 4 | 6 | 9 | 4 | 4 |
P value = 0.0227 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
19P GAIN MUTATED | 3 | 10 | 2 | 0 | 4 | 1 | 0 |
19P GAIN WILD-TYPE | 16 | 6 | 5 | 6 | 6 | 3 | 4 |
P value = 0.00357 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
19Q GAIN MUTATED | 2 | 10 | 1 | 0 | 5 | 0 | 0 |
19Q GAIN WILD-TYPE | 15 | 5 | 4 | 6 | 9 | 4 | 5 |
P value = 0.0063 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
19Q GAIN MUTATED | 2 | 10 | 1 | 0 | 4 | 1 | 0 |
19Q GAIN WILD-TYPE | 17 | 6 | 6 | 6 | 6 | 3 | 4 |
P value = 0.0175 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
20P GAIN MUTATED | 4 | 10 | 1 | 0 | 4 | 0 | 3 |
20P GAIN WILD-TYPE | 13 | 5 | 4 | 6 | 10 | 4 | 2 |
P value = 0.0238 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
20P GAIN MUTATED | 4 | 10 | 4 | 0 | 3 | 1 | 0 |
20P GAIN WILD-TYPE | 15 | 6 | 3 | 6 | 7 | 3 | 4 |
P value = 0.0224 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
20P GAIN MUTATED | 1 | 6 | 5 | 1 | 3 | 3 | 3 |
20P GAIN WILD-TYPE | 17 | 5 | 7 | 5 | 2 | 2 | 6 |
P value = 0.0152 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
20P GAIN MUTATED | 0 | 7 | 4 | 7 |
20P GAIN WILD-TYPE | 9 | 6 | 10 | 5 |
P value = 0.0182 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
20Q GAIN MUTATED | 4 | 10 | 1 | 0 | 4 | 0 | 3 |
20Q GAIN WILD-TYPE | 13 | 5 | 4 | 6 | 10 | 4 | 2 |
P value = 0.0235 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
20Q GAIN MUTATED | 4 | 10 | 4 | 0 | 3 | 1 | 0 |
20Q GAIN WILD-TYPE | 15 | 6 | 3 | 6 | 7 | 3 | 4 |
P value = 0.0216 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
20Q GAIN MUTATED | 1 | 6 | 5 | 1 | 3 | 3 | 3 |
20Q GAIN WILD-TYPE | 17 | 5 | 7 | 5 | 2 | 2 | 6 |
P value = 0.0153 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
20Q GAIN MUTATED | 0 | 7 | 4 | 7 |
20Q GAIN WILD-TYPE | 9 | 6 | 10 | 5 |
P value = 0.0238 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
22Q GAIN MUTATED | 1 | 7 | 5 | 1 | 2 | 1 | 2 |
22Q GAIN WILD-TYPE | 17 | 4 | 7 | 5 | 3 | 4 | 7 |
P value = 0.00993 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
22Q GAIN MUTATED | 1 | 9 | 2 | 4 |
22Q GAIN WILD-TYPE | 8 | 4 | 12 | 8 |
P value = 0.00227 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
22Q GAIN MUTATED | 3 | 5 | 3 | 0 | 0 | 0 | 3 | 2 | 0 |
22Q GAIN WILD-TYPE | 2 | 1 | 2 | 8 | 5 | 4 | 3 | 3 | 4 |
P value = 0.00761 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
XP GAIN MUTATED | 0 | 6 | 1 | 1 | 0 | 0 | 0 |
XP GAIN WILD-TYPE | 17 | 9 | 4 | 5 | 14 | 4 | 5 |
P value = 0.0196 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
XP GAIN MUTATED | 0 | 6 | 1 | 1 | 0 | 0 | 0 |
XP GAIN WILD-TYPE | 19 | 10 | 6 | 5 | 10 | 4 | 4 |
P value = 0.00734 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
XP GAIN MUTATED | 0 | 5 | 0 | 1 |
XP GAIN WILD-TYPE | 9 | 8 | 14 | 11 |
P value = 0.0308 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
XP GAIN MUTATED | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
XP GAIN WILD-TYPE | 3 | 3 | 5 | 8 | 5 | 4 | 6 | 4 | 4 |
P value = 0.00782 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
XQ GAIN MUTATED | 0 | 6 | 1 | 1 | 0 | 0 | 0 |
XQ GAIN WILD-TYPE | 17 | 9 | 4 | 5 | 14 | 4 | 5 |
P value = 0.0185 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
XQ GAIN MUTATED | 0 | 6 | 1 | 1 | 0 | 0 | 0 |
XQ GAIN WILD-TYPE | 19 | 10 | 6 | 5 | 10 | 4 | 4 |
P value = 0.00795 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
XQ GAIN MUTATED | 0 | 5 | 0 | 1 |
XQ GAIN WILD-TYPE | 9 | 8 | 14 | 11 |
P value = 0.0321 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
XQ GAIN MUTATED | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
XQ GAIN WILD-TYPE | 3 | 3 | 5 | 8 | 5 | 4 | 6 | 4 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
1P LOSS MUTATED | 19 | 27 | 7 |
1P LOSS WILD-TYPE | 0 | 2 | 11 |
P value = 0.00027 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
1P LOSS MUTATED | 17 | 10 | 5 | 4 | 13 | 0 | 4 |
1P LOSS WILD-TYPE | 0 | 5 | 0 | 2 | 1 | 4 | 1 |
P value = 0.00028 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
1P LOSS MUTATED | 19 | 11 | 6 | 4 | 9 | 4 | 0 |
1P LOSS WILD-TYPE | 0 | 5 | 1 | 2 | 1 | 0 | 4 |
P value = 0.00123 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
1P LOSS MUTATED | 18 | 8 | 11 | 4 | 4 | 5 | 3 |
1P LOSS WILD-TYPE | 0 | 3 | 1 | 2 | 1 | 0 | 6 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
1P LOSS MUTATED | 9 | 6 | 14 | 7 |
1P LOSS WILD-TYPE | 0 | 7 | 0 | 5 |
P value = 0.00204 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
1P LOSS MUTATED | 3 | 3 | 5 | 8 | 5 | 4 | 4 | 4 | 0 |
1P LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 2 | 1 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
1Q LOSS MUTATED | 19 | 26 | 6 |
1Q LOSS WILD-TYPE | 0 | 3 | 12 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
1Q LOSS MUTATED | 17 | 9 | 5 | 3 | 14 | 0 | 3 |
1Q LOSS WILD-TYPE | 0 | 6 | 0 | 3 | 0 | 4 | 2 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
1Q LOSS MUTATED | 19 | 10 | 5 | 3 | 10 | 4 | 0 |
1Q LOSS WILD-TYPE | 0 | 6 | 2 | 3 | 0 | 0 | 4 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
1Q LOSS MUTATED | 18 | 7 | 11 | 3 | 4 | 5 | 3 |
1Q LOSS WILD-TYPE | 0 | 4 | 1 | 3 | 1 | 0 | 6 |
P value = 0.0048 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
1Q LOSS MUTATED | 9 | 6 | 13 | 7 |
1Q LOSS WILD-TYPE | 0 | 7 | 1 | 5 |
P value = 0.0119 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
1Q LOSS MUTATED | 3 | 3 | 5 | 7 | 5 | 4 | 4 | 4 | 0 |
1Q LOSS WILD-TYPE | 2 | 3 | 0 | 1 | 0 | 0 | 2 | 1 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
2P LOSS MUTATED | 19 | 24 | 3 |
2P LOSS WILD-TYPE | 0 | 5 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
2P LOSS MUTATED | 17 | 9 | 4 | 0 | 13 | 0 | 3 |
2P LOSS WILD-TYPE | 0 | 6 | 1 | 6 | 1 | 4 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
2P LOSS MUTATED | 19 | 10 | 4 | 0 | 10 | 3 | 0 |
2P LOSS WILD-TYPE | 0 | 6 | 3 | 6 | 0 | 1 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
2P LOSS MUTATED | 18 | 7 | 10 | 2 | 3 | 5 | 1 |
2P LOSS WILD-TYPE | 0 | 4 | 2 | 4 | 2 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
2P LOSS MUTATED | 9 | 4 | 14 | 5 |
2P LOSS WILD-TYPE | 0 | 9 | 0 | 7 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
2P LOSS MUTATED | 3 | 2 | 5 | 8 | 5 | 4 | 3 | 2 | 0 |
2P LOSS WILD-TYPE | 2 | 4 | 0 | 0 | 0 | 0 | 3 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
2Q LOSS MUTATED | 19 | 24 | 3 |
2Q LOSS WILD-TYPE | 0 | 5 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
2Q LOSS MUTATED | 17 | 9 | 4 | 0 | 13 | 0 | 3 |
2Q LOSS WILD-TYPE | 0 | 6 | 1 | 6 | 1 | 4 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
2Q LOSS MUTATED | 19 | 10 | 4 | 0 | 10 | 3 | 0 |
2Q LOSS WILD-TYPE | 0 | 6 | 3 | 6 | 0 | 1 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
2Q LOSS MUTATED | 18 | 7 | 10 | 2 | 3 | 5 | 1 |
2Q LOSS WILD-TYPE | 0 | 4 | 2 | 4 | 2 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
2Q LOSS MUTATED | 9 | 4 | 14 | 5 |
2Q LOSS WILD-TYPE | 0 | 9 | 0 | 7 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
2Q LOSS MUTATED | 3 | 2 | 5 | 8 | 5 | 4 | 3 | 2 | 0 |
2Q LOSS WILD-TYPE | 2 | 4 | 0 | 0 | 0 | 0 | 3 | 3 | 4 |
P value = 0.0027 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
3P LOSS MUTATED | 0 | 6 | 0 | 1 | 0 | 2 | 0 |
3P LOSS WILD-TYPE | 19 | 10 | 7 | 5 | 10 | 2 | 4 |
P value = 0.00196 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
3Q LOSS MUTATED | 0 | 6 | 0 | 0 | 0 | 2 | 0 |
3Q LOSS WILD-TYPE | 19 | 10 | 7 | 6 | 10 | 2 | 4 |
P value = 0.00807 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 38 | 26 | 2 |
5P LOSS MUTATED | 10 | 0 | 0 |
5P LOSS WILD-TYPE | 28 | 26 | 2 |
P value = 0.0144 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
5P LOSS MUTATED | 1 | 6 | 2 | 0 | 0 | 0 | 1 |
5P LOSS WILD-TYPE | 16 | 9 | 3 | 6 | 14 | 4 | 4 |
P value = 0.019 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
5P LOSS MUTATED | 1 | 6 | 3 | 0 | 0 | 0 | 0 |
5P LOSS WILD-TYPE | 18 | 10 | 4 | 6 | 10 | 4 | 4 |
P value = 0.0148 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
5P LOSS MUTATED | 0 | 2 | 3 | 1 | 3 | 1 | 0 |
5P LOSS WILD-TYPE | 18 | 9 | 9 | 5 | 2 | 4 | 9 |
P value = 0.0068 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 38 | 26 | 2 |
5Q LOSS MUTATED | 10 | 0 | 0 |
5Q LOSS WILD-TYPE | 28 | 26 | 2 |
P value = 0.0147 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
5Q LOSS MUTATED | 1 | 6 | 2 | 0 | 0 | 0 | 1 |
5Q LOSS WILD-TYPE | 16 | 9 | 3 | 6 | 14 | 4 | 4 |
P value = 0.0191 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
5Q LOSS MUTATED | 1 | 6 | 3 | 0 | 0 | 0 | 0 |
5Q LOSS WILD-TYPE | 18 | 10 | 4 | 6 | 10 | 4 | 4 |
P value = 0.0143 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
5Q LOSS MUTATED | 0 | 2 | 3 | 1 | 3 | 1 | 0 |
5Q LOSS WILD-TYPE | 18 | 9 | 9 | 5 | 2 | 4 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
6P LOSS MUTATED | 19 | 26 | 6 |
6P LOSS WILD-TYPE | 0 | 3 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
6P LOSS MUTATED | 17 | 10 | 4 | 1 | 14 | 0 | 5 |
6P LOSS WILD-TYPE | 0 | 5 | 1 | 5 | 0 | 4 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
6P LOSS MUTATED | 19 | 11 | 6 | 1 | 10 | 4 | 0 |
6P LOSS WILD-TYPE | 0 | 5 | 1 | 5 | 0 | 0 | 4 |
P value = 0.00133 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
6P LOSS MUTATED | 18 | 8 | 10 | 3 | 4 | 5 | 3 |
6P LOSS WILD-TYPE | 0 | 3 | 2 | 3 | 1 | 0 | 6 |
P value = 0.00026 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
6P LOSS MUTATED | 9 | 5 | 14 | 8 |
6P LOSS WILD-TYPE | 0 | 8 | 0 | 4 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
6P LOSS MUTATED | 3 | 3 | 5 | 8 | 5 | 4 | 6 | 2 | 0 |
6P LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
6Q LOSS MUTATED | 19 | 26 | 6 |
6Q LOSS WILD-TYPE | 0 | 3 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
6Q LOSS MUTATED | 17 | 10 | 4 | 1 | 14 | 0 | 5 |
6Q LOSS WILD-TYPE | 0 | 5 | 1 | 5 | 0 | 4 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
6Q LOSS MUTATED | 19 | 11 | 6 | 1 | 10 | 4 | 0 |
6Q LOSS WILD-TYPE | 0 | 5 | 1 | 5 | 0 | 0 | 4 |
P value = 0.00129 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
6Q LOSS MUTATED | 18 | 8 | 10 | 3 | 4 | 5 | 3 |
6Q LOSS WILD-TYPE | 0 | 3 | 2 | 3 | 1 | 0 | 6 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
6Q LOSS MUTATED | 9 | 5 | 14 | 8 |
6Q LOSS WILD-TYPE | 0 | 8 | 0 | 4 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
6Q LOSS MUTATED | 3 | 3 | 5 | 8 | 5 | 4 | 6 | 2 | 0 |
6Q LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 3 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 38 | 26 | 2 |
8P LOSS MUTATED | 0 | 10 | 0 |
8P LOSS WILD-TYPE | 38 | 16 | 2 |
P value = 0.0216 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
8P LOSS MUTATED | 6 | 4 | 0 |
8P LOSS WILD-TYPE | 13 | 25 | 18 |
P value = 0.0244 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 26 | 17 | 20 |
8P LOSS MUTATED | 2 | 1 | 7 |
8P LOSS WILD-TYPE | 24 | 16 | 13 |
P value = 0.0269 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 29 | 20 | 14 |
8P LOSS MUTATED | 2 | 7 | 1 |
8P LOSS WILD-TYPE | 27 | 13 | 13 |
P value = 0.0191 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
8P LOSS MUTATED | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 0 |
8P LOSS WILD-TYPE | 5 | 6 | 2 | 6 | 5 | 4 | 6 | 5 | 4 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 38 | 26 | 2 |
8Q LOSS MUTATED | 0 | 9 | 0 |
8Q LOSS WILD-TYPE | 38 | 17 | 2 |
P value = 0.017 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
8Q LOSS MUTATED | 6 | 3 | 0 |
8Q LOSS WILD-TYPE | 13 | 26 | 18 |
P value = 0.0187 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
8Q LOSS MUTATED | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 0 |
8Q LOSS WILD-TYPE | 5 | 6 | 2 | 6 | 5 | 4 | 6 | 5 | 4 |
P value = 0.0117 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
9P LOSS MUTATED | 0 | 2 | 3 | 1 | 1 | 0 | 2 |
9P LOSS WILD-TYPE | 17 | 13 | 2 | 5 | 13 | 4 | 3 |
P value = 0.00504 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
9P LOSS MUTATED | 0 | 3 | 4 | 1 | 0 | 1 | 0 |
9P LOSS WILD-TYPE | 19 | 13 | 3 | 5 | 10 | 3 | 4 |
P value = 0.0209 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
9Q LOSS MUTATED | 0 | 2 | 3 | 1 | 2 | 0 | 2 |
9Q LOSS WILD-TYPE | 17 | 13 | 2 | 5 | 12 | 4 | 3 |
P value = 0.0156 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
9Q LOSS MUTATED | 0 | 3 | 4 | 1 | 1 | 1 | 0 |
9Q LOSS WILD-TYPE | 19 | 13 | 3 | 5 | 9 | 3 | 4 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
10P LOSS MUTATED | 19 | 23 | 6 |
10P LOSS WILD-TYPE | 0 | 6 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
10P LOSS MUTATED | 17 | 7 | 5 | 2 | 13 | 0 | 4 |
10P LOSS WILD-TYPE | 0 | 8 | 0 | 4 | 1 | 4 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
10P LOSS MUTATED | 19 | 8 | 6 | 2 | 10 | 3 | 0 |
10P LOSS WILD-TYPE | 0 | 8 | 1 | 4 | 0 | 1 | 4 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
10P LOSS MUTATED | 18 | 6 | 11 | 2 | 4 | 4 | 3 |
10P LOSS WILD-TYPE | 0 | 5 | 1 | 4 | 1 | 1 | 6 |
P value = 0.00159 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
10P LOSS MUTATED | 9 | 4 | 12 | 7 |
10P LOSS WILD-TYPE | 0 | 9 | 2 | 5 |
P value = 0.00726 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
10P LOSS MUTATED | 3 | 2 | 4 | 7 | 5 | 4 | 5 | 2 | 0 |
10P LOSS WILD-TYPE | 2 | 4 | 1 | 1 | 0 | 0 | 1 | 3 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
10Q LOSS MUTATED | 19 | 24 | 6 |
10Q LOSS WILD-TYPE | 0 | 5 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
10Q LOSS MUTATED | 17 | 7 | 5 | 2 | 14 | 0 | 4 |
10Q LOSS WILD-TYPE | 0 | 8 | 0 | 4 | 0 | 4 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
10Q LOSS MUTATED | 19 | 8 | 6 | 2 | 10 | 4 | 0 |
10Q LOSS WILD-TYPE | 0 | 8 | 1 | 4 | 0 | 0 | 4 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
10Q LOSS MUTATED | 18 | 7 | 11 | 2 | 4 | 4 | 3 |
10Q LOSS WILD-TYPE | 0 | 4 | 1 | 4 | 1 | 1 | 6 |
P value = 0.00543 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
10Q LOSS MUTATED | 9 | 5 | 12 | 7 |
10Q LOSS WILD-TYPE | 0 | 8 | 2 | 5 |
P value = 0.00178 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
10Q LOSS MUTATED | 3 | 2 | 5 | 7 | 5 | 4 | 5 | 2 | 0 |
10Q LOSS WILD-TYPE | 2 | 4 | 0 | 1 | 0 | 0 | 1 | 3 | 4 |
P value = 0.00027 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
13Q LOSS MUTATED | 13 | 25 | 5 |
13Q LOSS WILD-TYPE | 6 | 4 | 13 |
P value = 0.00016 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
13Q LOSS MUTATED | 13 | 10 | 3 | 0 | 13 | 0 | 4 |
13Q LOSS WILD-TYPE | 4 | 5 | 2 | 6 | 1 | 4 | 1 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
13Q LOSS MUTATED | 15 | 10 | 5 | 0 | 10 | 3 | 0 |
13Q LOSS WILD-TYPE | 4 | 6 | 2 | 6 | 0 | 1 | 4 |
P value = 0.00089 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
13Q LOSS MUTATED | 6 | 4 | 14 | 7 |
13Q LOSS WILD-TYPE | 3 | 9 | 0 | 5 |
P value = 0.00766 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
13Q LOSS MUTATED | 2 | 3 | 3 | 8 | 4 | 4 | 5 | 2 | 0 |
13Q LOSS WILD-TYPE | 3 | 3 | 2 | 0 | 1 | 0 | 1 | 3 | 4 |
P value = 0.0347 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
16Q LOSS MUTATED | 0 | 0 | 0 | 0 | 4 | 0 | 1 |
16Q LOSS WILD-TYPE | 17 | 15 | 5 | 6 | 10 | 4 | 4 |
P value = 0.00749 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
16Q LOSS MUTATED | 0 | 0 | 1 | 0 | 4 | 0 | 0 |
16Q LOSS WILD-TYPE | 19 | 16 | 6 | 6 | 6 | 4 | 4 |
P value = 0.0497 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
16Q LOSS MUTATED | 1 | 0 | 0 | 0 | 0 | 2 | 2 |
16Q LOSS WILD-TYPE | 17 | 11 | 12 | 6 | 5 | 3 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
17P LOSS MUTATED | 19 | 27 | 4 |
17P LOSS WILD-TYPE | 0 | 2 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
17P LOSS MUTATED | 17 | 10 | 5 | 0 | 14 | 0 | 4 |
17P LOSS WILD-TYPE | 0 | 5 | 0 | 6 | 0 | 4 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
17P LOSS MUTATED | 19 | 11 | 6 | 0 | 10 | 4 | 0 |
17P LOSS WILD-TYPE | 0 | 5 | 1 | 6 | 0 | 0 | 4 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
17P LOSS MUTATED | 18 | 8 | 11 | 3 | 3 | 5 | 2 |
17P LOSS WILD-TYPE | 0 | 3 | 1 | 3 | 2 | 0 | 7 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
17P LOSS MUTATED | 9 | 5 | 14 | 6 |
17P LOSS WILD-TYPE | 0 | 8 | 0 | 6 |
P value = 0.0011 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
17P LOSS MUTATED | 3 | 3 | 5 | 8 | 5 | 4 | 4 | 2 | 0 |
17P LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 2 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
17Q LOSS MUTATED | 19 | 27 | 4 |
17Q LOSS WILD-TYPE | 0 | 2 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
17Q LOSS MUTATED | 17 | 10 | 5 | 0 | 14 | 0 | 4 |
17Q LOSS WILD-TYPE | 0 | 5 | 0 | 6 | 0 | 4 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
17Q LOSS MUTATED | 19 | 11 | 6 | 0 | 10 | 4 | 0 |
17Q LOSS WILD-TYPE | 0 | 5 | 1 | 6 | 0 | 0 | 4 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
17Q LOSS MUTATED | 18 | 8 | 11 | 3 | 3 | 5 | 2 |
17Q LOSS WILD-TYPE | 0 | 3 | 1 | 3 | 2 | 0 | 7 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
17Q LOSS MUTATED | 9 | 5 | 14 | 6 |
17Q LOSS WILD-TYPE | 0 | 8 | 0 | 6 |
P value = 0.00121 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
17Q LOSS MUTATED | 3 | 3 | 5 | 8 | 5 | 4 | 4 | 2 | 0 |
17Q LOSS WILD-TYPE | 2 | 3 | 0 | 0 | 0 | 0 | 2 | 3 | 4 |
P value = 0.0406 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
18Q LOSS MUTATED | 0 | 7 | 2 |
18Q LOSS WILD-TYPE | 19 | 22 | 16 |
P value = 0.0364 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
18Q LOSS MUTATED | 1 | 1 | 0 | 0 | 4 | 0 | 3 |
18Q LOSS WILD-TYPE | 16 | 14 | 5 | 6 | 10 | 4 | 2 |
P value = 0.05 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
19Q LOSS MUTATED | 1 | 0 | 0 | 0 | 0 | 0 | 2 |
19Q LOSS WILD-TYPE | 16 | 15 | 5 | 6 | 14 | 4 | 3 |
P value = 0.0355 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
21Q LOSS MUTATED | 13 | 17 | 5 |
21Q LOSS WILD-TYPE | 6 | 12 | 13 |
P value = 0.0247 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
22Q LOSS MUTATED | 1 | 7 | 0 |
22Q LOSS WILD-TYPE | 18 | 22 | 18 |
P value = 0.00026 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
XP LOSS MUTATED | 14 | 21 | 3 |
XP LOSS WILD-TYPE | 5 | 8 | 15 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
XP LOSS MUTATED | 14 | 4 | 4 | 2 | 12 | 0 | 2 |
XP LOSS WILD-TYPE | 3 | 11 | 1 | 4 | 2 | 4 | 3 |
P value = 0.00027 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
XP LOSS MUTATED | 16 | 5 | 3 | 2 | 9 | 3 | 0 |
XP LOSS WILD-TYPE | 3 | 11 | 4 | 4 | 1 | 1 | 4 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
XP LOSS MUTATED | 18 | 4 | 7 | 2 | 2 | 4 | 1 |
XP LOSS WILD-TYPE | 0 | 7 | 5 | 4 | 3 | 1 | 8 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
XP LOSS MUTATED | 9 | 2 | 12 | 3 |
XP LOSS WILD-TYPE | 0 | 11 | 2 | 9 |
P value = 0.011 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
XP LOSS MUTATED | 3 | 1 | 2 | 6 | 5 | 4 | 2 | 3 | 0 |
XP LOSS WILD-TYPE | 2 | 5 | 3 | 2 | 0 | 0 | 4 | 2 | 4 |
P value = 0.00158 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 29 | 18 |
XQ LOSS MUTATED | 13 | 21 | 4 |
XQ LOSS WILD-TYPE | 6 | 8 | 14 |
P value = 0.00087 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 15 | 5 | 6 | 14 | 4 | 5 |
XQ LOSS MUTATED | 13 | 4 | 4 | 2 | 12 | 0 | 3 |
XQ LOSS WILD-TYPE | 4 | 11 | 1 | 4 | 2 | 4 | 2 |
P value = 0.00144 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 19 | 16 | 7 | 6 | 10 | 4 | 4 |
XQ LOSS MUTATED | 15 | 5 | 4 | 2 | 9 | 3 | 0 |
XQ LOSS WILD-TYPE | 4 | 11 | 3 | 4 | 1 | 1 | 4 |
P value = 0.00083 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 11 | 12 | 6 | 5 | 5 | 9 |
XQ LOSS MUTATED | 17 | 4 | 7 | 2 | 2 | 4 | 2 |
XQ LOSS WILD-TYPE | 1 | 7 | 5 | 4 | 3 | 1 | 7 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 9 | 13 | 14 | 12 |
XQ LOSS MUTATED | 9 | 2 | 11 | 4 |
XQ LOSS WILD-TYPE | 0 | 11 | 3 | 8 |
P value = 0.0498 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 6 | 5 | 8 | 5 | 4 | 6 | 5 | 4 |
XQ LOSS MUTATED | 3 | 1 | 2 | 6 | 5 | 3 | 3 | 3 | 0 |
XQ LOSS WILD-TYPE | 2 | 5 | 3 | 2 | 0 | 1 | 3 | 2 | 4 |
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/22507962/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/22539844/KICH-TP.transferedmergedcluster.txt
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Number of patients = 66
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Number of significantly arm-level cnvs = 63
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Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.