This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 32 focal events and 14 clinical features across 882 patients, 211 significant findings detected with Q value < 0.25.
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amp_1q32.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_2q32.1 cnv correlated to 'PATHOLOGY_N_STAGE' and 'HISTOLOGICAL_TYPE'.
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amp_3q26.32 cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_5q35.1 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_7q31.2 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', 'RADIATION_THERAPY', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_8q24.22 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_10p14 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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amp_17q24.3 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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amp_xq11.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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del_1p36.31 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_1p31.1 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'ETHNICITY'.
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del_1q44 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'HISTOLOGICAL_TYPE'.
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del_2q22.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_2q37.3 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_3p26.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_3p21.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_3p14.1 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_3p12.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_4q34.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_5p15.33 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_6q26 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_6q26 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_8p23.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_9p23 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_9p21.3 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_10q23.31 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_11q23.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_13q13.2 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_14q31.1 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'RADIATION_THERAPY', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_16q23.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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del_19p13.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_xp22.2 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGIC STAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
RADIATION THERAPY |
KARNOFSKY PERFORMANCE SCORE |
HISTOLOGICAL TYPE |
NUMBER PACK YEARS SMOKED |
YEAR OF TOBACCO SMOKING ONSET |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
del 3p26 3 | 489 (55%) | 393 |
0.000258 (0.0013) |
0.65 (0.794) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.0274 (0.0762) |
0.105 (0.229) |
0.0441 (0.113) |
0.275 (0.46) |
0.102 (0.226) |
1e-05 (7.23e-05) |
0.419 (0.602) |
0.0787 (0.185) |
1e-05 (7.23e-05) |
0.204 (0.374) |
del 14q31 1 | 279 (32%) | 603 |
5.96e-10 (5.34e-08) |
0.134 (0.275) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.00404 (0.0143) |
4.66e-05 (0.000275) |
0.591 (0.743) |
0.115 (0.244) |
0.000159 (0.000839) |
1e-05 (7.23e-05) |
0.359 (0.555) |
0.00978 (0.032) |
0.0174 (0.0509) |
1 (1.00) |
del 3p21 2 | 503 (57%) | 379 |
5.54e-07 (4.13e-05) |
0.547 (0.724) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.221 (0.394) |
0.00347 (0.0126) |
0.112 (0.238) |
0.295 (0.484) |
0.0359 (0.0941) |
1e-05 (7.23e-05) |
0.274 (0.46) |
0.042 (0.108) |
1e-05 (7.23e-05) |
0.75 (0.867) |
del 9p23 | 198 (22%) | 684 |
4.95e-13 (1.11e-10) |
0.0296 (0.0813) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.00204 (0.00802) |
0.000211 (0.00109) |
0.391 (0.573) |
0.389 (0.572) |
0.000567 (0.00259) |
1e-05 (7.23e-05) |
0.649 (0.794) |
0.893 (0.985) |
0.0201 (0.0575) |
0.847 (0.958) |
del 9p21 3 | 209 (24%) | 673 |
5.55e-16 (2.49e-13) |
0.0319 (0.0861) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
2e-05 (0.000134) |
9.3e-06 (7.23e-05) |
0.24 (0.419) |
0.404 (0.584) |
0.00135 (0.00549) |
1e-05 (7.23e-05) |
0.88 (0.979) |
0.923 (1.00) |
0.00591 (0.0198) |
0.853 (0.96) |
amp 1q32 1 | 82 (9%) | 800 |
6.46e-05 (0.000362) |
0.0354 (0.0938) |
3e-05 (0.000184) |
0.0001 (0.00054) |
0.0187 (0.0545) |
0.137 (0.278) |
0.538 (0.72) |
1 (1.00) |
0.049 (0.123) |
0.00249 (0.00945) |
0.282 (0.466) |
0.103 (0.226) |
0.121 (0.254) |
0.254 (0.436) |
amp 8q24 22 | 125 (14%) | 757 |
0.00102 (0.00432) |
0.0356 (0.0939) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.015 (0.0453) |
0.0101 (0.0322) |
0.539 (0.72) |
1 (1.00) |
0.214 (0.387) |
0.00113 (0.00473) |
0.152 (0.297) |
0.374 (0.56) |
0.025 (0.07) |
1 (1.00) |
amp 17q24 3 | 243 (28%) | 639 |
0.831 (0.945) |
0.0305 (0.0828) |
0.00058 (0.00262) |
0.00207 (0.00806) |
0.00049 (0.00229) |
0.214 (0.387) |
0.00102 (0.00432) |
1 (1.00) |
0.588 (0.742) |
1e-05 (7.23e-05) |
0.562 (0.733) |
0.108 (0.234) |
0.0145 (0.0443) |
0.119 (0.251) |
del 11q23 1 | 71 (8%) | 811 |
0.000445 (0.0021) |
0.00352 (0.0127) |
2e-05 (0.000134) |
1e-05 (7.23e-05) |
3e-05 (0.000184) |
0.111 (0.238) |
0.599 (0.75) |
0.247 (0.429) |
0.0934 (0.211) |
0.00456 (0.0158) |
0.635 (0.786) |
0.646 (0.794) |
0.289 (0.476) |
0.241 (0.42) |
del 13q13 2 | 149 (17%) | 733 |
0.0145 (0.0443) |
5.17e-05 (0.000297) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.00122 (0.00501) |
0.172 (0.329) |
0.00404 (0.0143) |
1 (1.00) |
0.596 (0.748) |
1e-05 (7.23e-05) |
0.839 (0.951) |
0.542 (0.722) |
0.0963 (0.217) |
0.378 (0.564) |
amp 7q31 2 | 377 (43%) | 505 |
0.985 (1.00) |
0.275 (0.46) |
0.0146 (0.0443) |
0.829 (0.945) |
0.0286 (0.0791) |
0.002 (0.00792) |
9.7e-06 (7.23e-05) |
0.101 (0.225) |
0.864 (0.968) |
1e-05 (7.23e-05) |
0.379 (0.564) |
0.00994 (0.0322) |
0.21 (0.383) |
0.199 (0.368) |
del 1p36 31 | 209 (24%) | 673 |
0.11 (0.236) |
0.0822 (0.192) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.00964 (0.0318) |
0.422 (0.603) |
0.355 (0.55) |
0.565 (0.733) |
0.093 (0.211) |
1e-05 (7.23e-05) |
0.402 (0.583) |
0.278 (0.462) |
0.666 (0.806) |
0.336 (0.536) |
del 2q37 3 | 111 (13%) | 771 |
0.0298 (0.0814) |
0.00311 (0.0114) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.374 (0.56) |
0.0849 (0.196) |
0.518 (0.707) |
1 (1.00) |
0.0163 (0.048) |
1e-05 (7.23e-05) |
0.49 (0.68) |
0.915 (1.00) |
0.511 (0.699) |
1 (1.00) |
del 4q34 3 | 113 (13%) | 769 |
4.07e-10 (4.56e-08) |
0.717 (0.852) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.00167 (0.00674) |
0.0139 (0.0435) |
0.749 (0.867) |
1 (1.00) |
0.249 (0.43) |
0.0333 (0.0887) |
0.348 (0.543) |
0.703 (0.841) |
0.0585 (0.143) |
0.478 (0.665) |
del 19p13 3 | 43 (5%) | 839 |
5.05e-12 (7.55e-10) |
0.418 (0.602) |
2e-05 (0.000134) |
1e-05 (7.23e-05) |
6e-05 (0.00034) |
0.0688 (0.165) |
0.619 (0.772) |
1 (1.00) |
0.00517 (0.0177) |
0.0108 (0.034) |
0.15 (0.295) |
0.326 (0.523) |
0.72 (0.854) |
|
amp 5q35 1 | 376 (43%) | 506 |
0.128 (0.265) |
0.185 (0.349) |
3e-05 (0.000184) |
0.0031 (0.0114) |
0.052 (0.129) |
0.0158 (0.0473) |
0.385 (0.57) |
0.199 (0.368) |
0.149 (0.295) |
1e-05 (7.23e-05) |
0.77 (0.884) |
0.277 (0.462) |
3e-05 (0.000184) |
1 (1.00) |
amp xq11 2 | 136 (15%) | 746 |
0.0518 (0.129) |
0.373 (0.56) |
0.0201 (0.0575) |
0.0161 (0.0476) |
0.813 (0.929) |
0.568 (0.733) |
0.000107 (0.00057) |
1 (1.00) |
0.393 (0.573) |
1e-05 (7.23e-05) |
0.743 (0.867) |
0.0331 (0.0887) |
0.183 (0.346) |
0.522 (0.711) |
del 1p31 1 | 166 (19%) | 716 |
0.585 (0.742) |
0.0402 (0.105) |
8e-05 (0.000442) |
2e-05 (0.000134) |
0.0616 (0.15) |
0.885 (0.981) |
0.855 (0.96) |
1 (1.00) |
0.982 (1.00) |
1e-05 (7.23e-05) |
0.701 (0.841) |
0.537 (0.72) |
0.476 (0.665) |
0.0884 (0.203) |
del 2q22 1 | 75 (9%) | 807 |
0.0459 (0.117) |
0.000439 (0.00209) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.259 (0.442) |
0.527 (0.714) |
0.124 (0.259) |
1 (1.00) |
0.0768 (0.182) |
1e-05 (7.23e-05) |
0.339 (0.536) |
0.747 (0.867) |
0.502 (0.694) |
0.753 (0.867) |
del 3p14 1 | 408 (46%) | 474 |
0.0006 (0.00266) |
0.953 (1.00) |
0.00032 (0.00158) |
2e-05 (0.000134) |
0.173 (0.329) |
0.564 (0.733) |
0.252 (0.434) |
0.221 (0.394) |
0.344 (0.538) |
1e-05 (7.23e-05) |
0.355 (0.55) |
0.0554 (0.136) |
0.00024 (0.00122) |
0.632 (0.785) |
del 3p12 2 | 336 (38%) | 546 |
0.000163 (0.000851) |
0.751 (0.867) |
0.0108 (0.034) |
0.00275 (0.0103) |
0.297 (0.485) |
0.648 (0.794) |
0.141 (0.283) |
0.145 (0.288) |
0.874 (0.974) |
1e-05 (7.23e-05) |
0.296 (0.484) |
0.0829 (0.192) |
0.00576 (0.0195) |
0.743 (0.867) |
del 5p15 33 | 31 (4%) | 851 |
0.931 (1.00) |
0.00425 (0.0149) |
0.00028 (0.00139) |
0.00056 (0.00259) |
0.00582 (0.0196) |
0.74 (0.867) |
0.174 (0.329) |
1 (1.00) |
0.0994 (0.223) |
1e-05 (7.23e-05) |
0.537 (0.72) |
0.438 (0.624) |
0.586 (0.742) |
0.141 (0.283) |
del 6q26 | 233 (26%) | 649 |
0.447 (0.632) |
0.257 (0.44) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.0145 (0.0443) |
1 (1.00) |
0.57 (0.733) |
0.575 (0.733) |
0.161 (0.311) |
1e-05 (7.23e-05) |
0.103 (0.226) |
0.371 (0.56) |
0.00084 (0.00365) |
0.137 (0.278) |
del 6q26 | 234 (27%) | 648 |
0.442 (0.629) |
0.264 (0.448) |
3e-05 (0.000184) |
3e-05 (0.000184) |
0.0146 (0.0443) |
1 (1.00) |
0.686 (0.826) |
0.573 (0.733) |
0.161 (0.311) |
1e-05 (7.23e-05) |
0.103 (0.226) |
0.371 (0.56) |
0.00217 (0.00838) |
0.14 (0.282) |
del 8p23 2 | 184 (21%) | 698 |
0.00033 (0.00161) |
0.65 (0.794) |
0.00177 (0.00708) |
0.00095 (0.00409) |
0.561 (0.733) |
0.0189 (0.0546) |
0.725 (0.855) |
1 (1.00) |
0.389 (0.572) |
1e-05 (7.23e-05) |
0.952 (1.00) |
0.725 (0.855) |
0.00365 (0.0131) |
0.154 (0.3) |
del 10q23 31 | 164 (19%) | 718 |
0.628 (0.782) |
0.0732 (0.174) |
1e-05 (7.23e-05) |
1e-05 (7.23e-05) |
0.325 (0.523) |
0.888 (0.982) |
0.714 (0.85) |
1 (1.00) |
0.664 (0.806) |
1e-05 (7.23e-05) |
0.068 (0.164) |
0.271 (0.458) |
0.0772 (0.182) |
0.381 (0.566) |
del 1q44 | 116 (13%) | 766 |
0.092 (0.21) |
0.01 (0.0322) |
0.0004 (0.00193) |
0.00116 (0.00481) |
0.341 (0.536) |
0.305 (0.496) |
0.17 (0.326) |
1 (1.00) |
0.466 (0.654) |
1e-05 (7.23e-05) |
0.807 (0.925) |
0.567 (0.733) |
0.226 (0.401) |
0.22 (0.394) |
del xp22 2 | 125 (14%) | 757 |
0.576 (0.733) |
0.00226 (0.00867) |
9e-05 (0.000492) |
4e-05 (0.000242) |
0.0419 (0.108) |
1 (1.00) |
0.473 (0.663) |
1 (1.00) |
0.93 (1.00) |
1e-05 (7.23e-05) |
0.996 (1.00) |
0.447 (0.632) |
0.528 (0.714) |
0.462 (0.65) |
amp 3q26 32 | 193 (22%) | 689 |
0.238 (0.419) |
0.12 (0.252) |
0.144 (0.287) |
0.191 (0.357) |
0.0482 (0.121) |
0.00716 (0.0238) |
0.194 (0.363) |
1 (1.00) |
0.51 (0.699) |
1e-05 (7.23e-05) |
0.571 (0.733) |
0.341 (0.536) |
0.0476 (0.121) |
0.704 (0.841) |
del 16q23 3 | 37 (4%) | 845 |
4.66e-05 (0.000275) |
0.543 (0.722) |
0.00505 (0.0174) |
5e-05 (0.000291) |
0.00059 (0.00264) |
0.363 (0.556) |
1 (1.00) |
1 (1.00) |
0.332 (0.531) |
0.13 (0.269) |
0.556 (0.732) |
0.867 (0.969) |
0.51 (0.699) |
1 (1.00) |
amp 10p14 | 34 (4%) | 848 |
0.371 (0.56) |
0.338 (0.536) |
0.0681 (0.164) |
0.00067 (0.00294) |
0.0235 (0.0667) |
0.575 (0.733) |
0.853 (0.96) |
1 (1.00) |
0.136 (0.278) |
0.548 (0.724) |
0.753 (0.867) |
0.199 (0.368) |
1 (1.00) |
|
amp 2q32 1 | 136 (15%) | 746 |
0.916 (1.00) |
0.21 (0.383) |
0.365 (0.558) |
0.309 (0.5) |
0.0238 (0.067) |
1 (1.00) |
0.236 (0.417) |
0.362 (0.556) |
0.233 (0.412) |
0.00273 (0.0103) |
0.974 (1.00) |
0.394 (0.573) |
0.681 (0.822) |
0.654 (0.796) |
P value = 6.46e-05 (logrank test), Q value = 0.00036
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
AMP PEAK 1(1Q32.1) MUTATED | 82 | 36 | 0.4 - 129.4 (27.6) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 794 | 192 | 0.1 - 194.8 (36.5) |
P value = 0.0354 (Wilcoxon-test), Q value = 0.094
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
AMP PEAK 1(1Q32.1) MUTATED | 80 | 62.4 (12.2) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 796 | 59.9 (12.5) |
P value = 3e-05 (Fisher's exact test), Q value = 0.00018
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 1(1Q32.1) MUTATED | 24 | 10 | 31 | 16 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 430 | 93 | 159 | 88 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00054
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
AMP PEAK 1(1Q32.1) MUTATED | 27 | 12 | 42 | 1 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 453 | 115 | 216 | 14 |
P value = 0.0187 (Fisher's exact test), Q value = 0.055
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 1(1Q32.1) MUTATED | 35 | 10 | 2 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 288 | 34 | 4 |
P value = 0.049 (Wilcoxon-test), Q value = 0.12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
AMP PEAK 1(1Q32.1) MUTATED | 11 | 60.0 (47.7) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 132 | 90.0 (17.8) |
P value = 0.00249 (Fisher's exact test), Q value = 0.0095
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 1(1Q32.1) MUTATED | 1 | 62 | 19 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 65 | 466 | 269 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 1(1Q32.1) MUTATED | 3 | 1989.0 (19.2) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 71 | 1973.1 (15.7) |
P value = 0.0238 (Fisher's exact test), Q value = 0.067
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 2(2Q32.1) MUTATED | 48 | 11 | 3 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 275 | 33 | 3 |
P value = 0.00273 (Fisher's exact test), Q value = 0.01
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 2(2Q32.1) MUTATED | 2 | 81 | 53 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 64 | 447 | 235 |
P value = 0.0482 (Fisher's exact test), Q value = 0.12
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 3(3Q26.32) MUTATED | 59 | 15 | 1 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 264 | 29 | 5 |
P value = 0.00716 (Fisher's exact test), Q value = 0.024
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
AMP PEAK 3(3Q26.32) MUTATED | 90 | 26 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 456 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 3(3Q26.32) MUTATED | 6 | 87 | 100 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 60 | 441 | 188 |
P value = 0.0476 (Fisher's exact test), Q value = 0.12
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
AMP PEAK 3(3Q26.32) MUTATED | 2 | 1 | 26 | 155 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 0 | 15 | 95 | 564 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00018
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 4(5Q35.1) MUTATED | 173 | 42 | 91 | 66 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 281 | 61 | 99 | 38 |
P value = 0.0031 (Fisher's exact test), Q value = 0.011
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
AMP PEAK 4(5Q35.1) MUTATED | 180 | 56 | 133 | 7 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 300 | 71 | 125 | 8 |
P value = 0.052 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 4(5Q35.1) MUTATED | 163 | 14 | 2 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 160 | 30 | 4 |
P value = 0.0158 (Fisher's exact test), Q value = 0.047
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
AMP PEAK 4(5Q35.1) MUTATED | 278 | 58 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 268 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 4(5Q35.1) MUTATED | 8 | 332 | 36 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 58 | 196 | 252 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00018
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
AMP PEAK 4(5Q35.1) MUTATED | 0 | 5 | 31 | 333 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 2 | 11 | 90 | 386 |
P value = 0.0146 (Fisher's exact test), Q value = 0.044
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 5(7Q31.2) MUTATED | 193 | 38 | 69 | 57 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 261 | 65 | 121 | 47 |
P value = 0.0286 (Fisher's exact test), Q value = 0.079
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 5(7Q31.2) MUTATED | 121 | 21 | 5 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 202 | 23 | 1 |
P value = 0.002 (Fisher's exact test), Q value = 0.0079
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
AMP PEAK 5(7Q31.2) MUTATED | 191 | 47 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 355 | 42 |
P value = 9.7e-06 (Fisher's exact test), Q value = 7.2e-05
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 590 |
AMP PEAK 5(7Q31.2) MUTATED | 94 | 283 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 198 | 307 |
P value = 0.101 (Fisher's exact test), Q value = 0.23
nPatients | NO | YES |
---|---|---|
ALL | 408 | 3 |
AMP PEAK 5(7Q31.2) MUTATED | 189 | 3 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 219 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 5(7Q31.2) MUTATED | 25 | 175 | 177 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 41 | 353 | 111 |
P value = 0.00994 (Wilcoxon-test), Q value = 0.032
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 5(7Q31.2) MUTATED | 40 | 1969.4 (15.3) |
AMP PEAK 5(7Q31.2) WILD-TYPE | 34 | 1978.8 (15.5) |
P value = 0.00102 (logrank test), Q value = 0.0043
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
AMP PEAK 6(8Q24.22) MUTATED | 124 | 45 | 0.2 - 153.7 (27.6) |
AMP PEAK 6(8Q24.22) WILD-TYPE | 752 | 183 | 0.1 - 194.8 (36.8) |
P value = 0.0356 (Wilcoxon-test), Q value = 0.094
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
AMP PEAK 6(8Q24.22) MUTATED | 125 | 62.2 (12.6) |
AMP PEAK 6(8Q24.22) WILD-TYPE | 751 | 59.8 (12.5) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 6(8Q24.22) MUTATED | 35 | 23 | 38 | 27 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 419 | 80 | 152 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
AMP PEAK 6(8Q24.22) MUTATED | 36 | 24 | 61 | 4 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 444 | 103 | 197 | 11 |
P value = 0.015 (Fisher's exact test), Q value = 0.045
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 6(8Q24.22) MUTATED | 53 | 13 | 3 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 270 | 31 | 3 |
P value = 0.0101 (Fisher's exact test), Q value = 0.032
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
AMP PEAK 6(8Q24.22) MUTATED | 74 | 22 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 472 | 67 |
P value = 0.00113 (Fisher's exact test), Q value = 0.0047
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 6(8Q24.22) MUTATED | 18 | 79 | 28 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 48 | 449 | 260 |
P value = 0.025 (Fisher's exact test), Q value = 0.07
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
AMP PEAK 6(8Q24.22) MUTATED | 0 | 4 | 8 | 110 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 2 | 12 | 113 | 609 |
P value = 0.0681 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 7(10P14) MUTATED | 12 | 7 | 6 | 7 |
AMP PEAK 7(10P14) WILD-TYPE | 442 | 96 | 184 | 97 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0029
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
AMP PEAK 7(10P14) MUTATED | 13 | 9 | 8 | 4 |
AMP PEAK 7(10P14) WILD-TYPE | 467 | 118 | 250 | 11 |
P value = 0.0235 (Fisher's exact test), Q value = 0.067
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 7(10P14) MUTATED | 12 | 5 | 1 |
AMP PEAK 7(10P14) WILD-TYPE | 311 | 39 | 5 |
P value = 0.0305 (Wilcoxon-test), Q value = 0.083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
AMP PEAK 8(17Q24.3) MUTATED | 240 | 61.6 (12.2) |
AMP PEAK 8(17Q24.3) WILD-TYPE | 636 | 59.6 (12.6) |
P value = 0.00058 (Fisher's exact test), Q value = 0.0026
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 8(17Q24.3) MUTATED | 145 | 22 | 41 | 16 |
AMP PEAK 8(17Q24.3) WILD-TYPE | 309 | 81 | 149 | 88 |
P value = 0.00207 (Fisher's exact test), Q value = 0.0081
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
AMP PEAK 8(17Q24.3) MUTATED | 156 | 31 | 51 | 4 |
AMP PEAK 8(17Q24.3) WILD-TYPE | 324 | 96 | 207 | 11 |
P value = 0.00049 (Fisher's exact test), Q value = 0.0023
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
AMP PEAK 8(17Q24.3) MUTATED | 48 | 16 | 3 |
AMP PEAK 8(17Q24.3) WILD-TYPE | 275 | 28 | 3 |
P value = 0.00102 (Fisher's exact test), Q value = 0.0043
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 590 |
AMP PEAK 8(17Q24.3) MUTATED | 60 | 183 |
AMP PEAK 8(17Q24.3) WILD-TYPE | 232 | 407 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 8(17Q24.3) MUTATED | 1 | 42 | 200 |
AMP PEAK 8(17Q24.3) WILD-TYPE | 65 | 486 | 88 |
P value = 0.108 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 8(17Q24.3) MUTATED | 37 | 1971.2 (15.7) |
AMP PEAK 8(17Q24.3) WILD-TYPE | 37 | 1976.3 (16.1) |
P value = 0.0145 (Fisher's exact test), Q value = 0.044
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
AMP PEAK 8(17Q24.3) MUTATED | 2 | 7 | 40 | 184 |
AMP PEAK 8(17Q24.3) WILD-TYPE | 0 | 9 | 81 | 535 |
P value = 0.0518 (logrank test), Q value = 0.13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
AMP PEAK 9(XQ11.2) MUTATED | 134 | 23 | 0.1 - 194.8 (29.8) |
AMP PEAK 9(XQ11.2) WILD-TYPE | 742 | 205 | 0.1 - 153.7 (36.5) |
P value = 0.0201 (Fisher's exact test), Q value = 0.057
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
AMP PEAK 9(XQ11.2) MUTATED | 79 | 17 | 16 | 13 |
AMP PEAK 9(XQ11.2) WILD-TYPE | 375 | 86 | 174 | 91 |
P value = 0.0161 (Fisher's exact test), Q value = 0.048
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
AMP PEAK 9(XQ11.2) MUTATED | 86 | 23 | 25 | 2 |
AMP PEAK 9(XQ11.2) WILD-TYPE | 394 | 104 | 233 | 13 |
P value = 0.000107 (Fisher's exact test), Q value = 0.00057
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 590 |
AMP PEAK 9(XQ11.2) MUTATED | 26 | 110 |
AMP PEAK 9(XQ11.2) WILD-TYPE | 266 | 480 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
AMP PEAK 9(XQ11.2) MUTATED | 8 | 29 | 99 |
AMP PEAK 9(XQ11.2) WILD-TYPE | 58 | 499 | 189 |
P value = 0.0331 (Wilcoxon-test), Q value = 0.089
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 9(XQ11.2) MUTATED | 18 | 1966.9 (15.0) |
AMP PEAK 9(XQ11.2) WILD-TYPE | 56 | 1975.9 (15.8) |
P value = 0.11 (logrank test), Q value = 0.24
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 1(1P36.31) MUTATED | 208 | 70 | 0.1 - 153.7 (40.2) |
DEL PEAK 1(1P36.31) WILD-TYPE | 668 | 158 | 0.1 - 194.8 (34.3) |
P value = 0.0822 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 1(1P36.31) MUTATED | 208 | 58.5 (13.6) |
DEL PEAK 1(1P36.31) WILD-TYPE | 668 | 60.7 (12.1) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 1(1P36.31) MUTATED | 73 | 38 | 59 | 31 |
DEL PEAK 1(1P36.31) WILD-TYPE | 381 | 65 | 131 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 1(1P36.31) MUTATED | 80 | 47 | 76 | 6 |
DEL PEAK 1(1P36.31) WILD-TYPE | 400 | 80 | 182 | 9 |
P value = 0.00964 (Fisher's exact test), Q value = 0.032
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 1(1P36.31) MUTATED | 92 | 20 | 4 |
DEL PEAK 1(1P36.31) WILD-TYPE | 231 | 24 | 2 |
P value = 0.093 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 1(1P36.31) MUTATED | 33 | 80.9 (30.2) |
DEL PEAK 1(1P36.31) WILD-TYPE | 110 | 89.7 (19.7) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 1(1P36.31) MUTATED | 53 | 102 | 54 |
DEL PEAK 1(1P36.31) WILD-TYPE | 13 | 426 | 234 |
P value = 0.0402 (Wilcoxon-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 2(1P31.1) MUTATED | 166 | 58.0 (13.9) |
DEL PEAK 2(1P31.1) WILD-TYPE | 710 | 60.7 (12.1) |
P value = 8e-05 (Fisher's exact test), Q value = 0.00044
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 2(1P31.1) MUTATED | 60 | 34 | 42 | 24 |
DEL PEAK 2(1P31.1) WILD-TYPE | 394 | 69 | 148 | 80 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 2(1P31.1) MUTATED | 66 | 40 | 54 | 6 |
DEL PEAK 2(1P31.1) WILD-TYPE | 414 | 87 | 204 | 9 |
P value = 0.0616 (Fisher's exact test), Q value = 0.15
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 2(1P31.1) MUTATED | 72 | 15 | 3 |
DEL PEAK 2(1P31.1) WILD-TYPE | 251 | 29 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 2(1P31.1) MUTATED | 53 | 77 | 36 |
DEL PEAK 2(1P31.1) WILD-TYPE | 13 | 451 | 252 |
P value = 0.0884 (Fisher's exact test), Q value = 0.2
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 42 | 622 |
DEL PEAK 2(1P31.1) MUTATED | 11 | 99 |
DEL PEAK 2(1P31.1) WILD-TYPE | 31 | 523 |
P value = 0.092 (logrank test), Q value = 0.21
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 3(1Q44) MUTATED | 115 | 29 | 0.1 - 153.7 (50.0) |
DEL PEAK 3(1Q44) WILD-TYPE | 761 | 199 | 0.1 - 194.8 (33.5) |
P value = 0.01 (Wilcoxon-test), Q value = 0.032
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 3(1Q44) MUTATED | 116 | 56.9 (14.4) |
DEL PEAK 3(1Q44) WILD-TYPE | 760 | 60.6 (12.1) |
P value = 4e-04 (Fisher's exact test), Q value = 0.0019
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 3(1Q44) MUTATED | 47 | 28 | 23 | 14 |
DEL PEAK 3(1Q44) WILD-TYPE | 407 | 75 | 167 | 90 |
P value = 0.00116 (Fisher's exact test), Q value = 0.0048
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 3(1Q44) MUTATED | 49 | 29 | 34 | 4 |
DEL PEAK 3(1Q44) WILD-TYPE | 431 | 98 | 224 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 3(1Q44) MUTATED | 51 | 44 | 21 |
DEL PEAK 3(1Q44) WILD-TYPE | 15 | 484 | 267 |
P value = 0.0459 (logrank test), Q value = 0.12
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 4(2Q22.1) MUTATED | 74 | 17 | 2.5 - 153.7 (52.6) |
DEL PEAK 4(2Q22.1) WILD-TYPE | 802 | 211 | 0.1 - 194.8 (33.5) |
P value = 0.000439 (Wilcoxon-test), Q value = 0.0021
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 4(2Q22.1) MUTATED | 74 | 54.6 (14.6) |
DEL PEAK 4(2Q22.1) WILD-TYPE | 802 | 60.7 (12.2) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 4(2Q22.1) MUTATED | 21 | 26 | 18 | 9 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 433 | 77 | 172 | 95 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 4(2Q22.1) MUTATED | 23 | 26 | 24 | 2 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 457 | 101 | 234 | 13 |
P value = 0.0768 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 4(2Q22.1) MUTATED | 12 | 90.0 (28.6) |
DEL PEAK 4(2Q22.1) WILD-TYPE | 131 | 87.5 (22.3) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 4(2Q22.1) MUTATED | 46 | 19 | 10 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 20 | 509 | 278 |
P value = 0.0298 (logrank test), Q value = 0.081
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 5(2Q37.3) MUTATED | 110 | 23 | 0.4 - 153.7 (44.7) |
DEL PEAK 5(2Q37.3) WILD-TYPE | 766 | 205 | 0.1 - 194.8 (33.3) |
P value = 0.00311 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 5(2Q37.3) MUTATED | 110 | 56.6 (14.1) |
DEL PEAK 5(2Q37.3) WILD-TYPE | 766 | 60.7 (12.2) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 5(2Q37.3) MUTATED | 38 | 32 | 28 | 11 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 416 | 71 | 162 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 5(2Q37.3) MUTATED | 39 | 34 | 35 | 3 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 441 | 93 | 223 | 12 |
P value = 0.0849 (Fisher's exact test), Q value = 0.2
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 5(2Q37.3) MUTATED | 75 | 6 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 471 | 83 |
P value = 0.0163 (Wilcoxon-test), Q value = 0.048
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 5(2Q37.3) MUTATED | 11 | 98.2 (4.0) |
DEL PEAK 5(2Q37.3) WILD-TYPE | 132 | 86.8 (23.5) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 5(2Q37.3) MUTATED | 49 | 50 | 12 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 17 | 478 | 276 |
P value = 0.000258 (logrank test), Q value = 0.0013
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 6(3P26.3) MUTATED | 488 | 159 | 0.1 - 153.7 (38.7) |
DEL PEAK 6(3P26.3) WILD-TYPE | 388 | 69 | 0.1 - 194.8 (29.2) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 6(3P26.3) MUTATED | 227 | 57 | 128 | 74 |
DEL PEAK 6(3P26.3) WILD-TYPE | 227 | 46 | 62 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 6(3P26.3) MUTATED | 234 | 71 | 177 | 7 |
DEL PEAK 6(3P26.3) WILD-TYPE | 246 | 56 | 81 | 8 |
P value = 0.0274 (Fisher's exact test), Q value = 0.076
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 6(3P26.3) MUTATED | 214 | 22 | 2 |
DEL PEAK 6(3P26.3) WILD-TYPE | 109 | 22 | 4 |
P value = 0.105 (Fisher's exact test), Q value = 0.23
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 6(3P26.3) MUTATED | 374 | 69 |
DEL PEAK 6(3P26.3) WILD-TYPE | 172 | 20 |
P value = 0.0441 (Fisher's exact test), Q value = 0.11
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 590 |
DEL PEAK 6(3P26.3) MUTATED | 176 | 313 |
DEL PEAK 6(3P26.3) WILD-TYPE | 116 | 277 |
P value = 0.102 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 6(3P26.3) MUTATED | 54 | 82.4 (29.6) |
DEL PEAK 6(3P26.3) WILD-TYPE | 89 | 90.9 (16.8) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 6(3P26.3) MUTATED | 10 | 455 | 24 |
DEL PEAK 6(3P26.3) WILD-TYPE | 56 | 73 | 264 |
P value = 0.0787 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 6(3P26.3) MUTATED | 19 | 1979.3 (18.0) |
DEL PEAK 6(3P26.3) WILD-TYPE | 55 | 1971.8 (14.9) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 6(3P26.3) MUTATED | 0 | 7 | 43 | 430 |
DEL PEAK 6(3P26.3) WILD-TYPE | 2 | 9 | 78 | 289 |
P value = 5.54e-07 (logrank test), Q value = 4.1e-05
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 7(3P21.2) MUTATED | 502 | 171 | 0.1 - 153.7 (38.4) |
DEL PEAK 7(3P21.2) WILD-TYPE | 374 | 57 | 0.1 - 194.8 (30.1) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 7(3P21.2) MUTATED | 227 | 57 | 134 | 81 |
DEL PEAK 7(3P21.2) WILD-TYPE | 227 | 46 | 56 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 7(3P21.2) MUTATED | 234 | 72 | 190 | 7 |
DEL PEAK 7(3P21.2) WILD-TYPE | 246 | 55 | 68 | 8 |
P value = 0.00347 (Fisher's exact test), Q value = 0.013
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 7(3P21.2) MUTATED | 379 | 75 |
DEL PEAK 7(3P21.2) WILD-TYPE | 167 | 14 |
P value = 0.112 (Fisher's exact test), Q value = 0.24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 590 |
DEL PEAK 7(3P21.2) MUTATED | 178 | 325 |
DEL PEAK 7(3P21.2) WILD-TYPE | 114 | 265 |
P value = 0.0359 (Wilcoxon-test), Q value = 0.094
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 7(3P21.2) MUTATED | 57 | 81.2 (30.8) |
DEL PEAK 7(3P21.2) WILD-TYPE | 86 | 92.0 (13.9) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 7(3P21.2) MUTATED | 11 | 465 | 27 |
DEL PEAK 7(3P21.2) WILD-TYPE | 55 | 63 | 261 |
P value = 0.042 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 7(3P21.2) MUTATED | 21 | 1979.4 (17.0) |
DEL PEAK 7(3P21.2) WILD-TYPE | 53 | 1971.5 (15.1) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 7(3P21.2) MUTATED | 0 | 8 | 43 | 444 |
DEL PEAK 7(3P21.2) WILD-TYPE | 2 | 8 | 78 | 275 |
P value = 6e-04 (logrank test), Q value = 0.0027
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 8(3P14.1) MUTATED | 408 | 136 | 0.1 - 153.7 (39.0) |
DEL PEAK 8(3P14.1) WILD-TYPE | 468 | 92 | 0.1 - 194.8 (30.7) |
P value = 0.00032 (Fisher's exact test), Q value = 0.0016
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 8(3P14.1) MUTATED | 187 | 49 | 110 | 59 |
DEL PEAK 8(3P14.1) WILD-TYPE | 267 | 54 | 80 | 45 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 8(3P14.1) MUTATED | 192 | 60 | 151 | 5 |
DEL PEAK 8(3P14.1) WILD-TYPE | 288 | 67 | 107 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 8(3P14.1) MUTATED | 11 | 373 | 24 |
DEL PEAK 8(3P14.1) WILD-TYPE | 55 | 155 | 264 |
P value = 0.0554 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 8(3P14.1) MUTATED | 17 | 1979.9 (18.1) |
DEL PEAK 8(3P14.1) WILD-TYPE | 57 | 1971.9 (15.0) |
P value = 0.00024 (Fisher's exact test), Q value = 0.0012
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 8(3P14.1) MUTATED | 0 | 7 | 37 | 357 |
DEL PEAK 8(3P14.1) WILD-TYPE | 2 | 9 | 84 | 362 |
P value = 0.000163 (logrank test), Q value = 0.00085
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 9(3P12.2) MUTATED | 336 | 117 | 0.1 - 153.7 (39.0) |
DEL PEAK 9(3P12.2) WILD-TYPE | 540 | 111 | 0.1 - 194.8 (31.3) |
P value = 0.0108 (Fisher's exact test), Q value = 0.034
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 9(3P12.2) MUTATED | 155 | 42 | 87 | 49 |
DEL PEAK 9(3P12.2) WILD-TYPE | 299 | 61 | 103 | 55 |
P value = 0.00275 (Fisher's exact test), Q value = 0.01
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 9(3P12.2) MUTATED | 160 | 51 | 121 | 4 |
DEL PEAK 9(3P12.2) WILD-TYPE | 320 | 76 | 137 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 9(3P12.2) MUTATED | 11 | 305 | 20 |
DEL PEAK 9(3P12.2) WILD-TYPE | 55 | 223 | 268 |
P value = 0.0829 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 9(3P12.2) MUTATED | 13 | 1980.2 (17.0) |
DEL PEAK 9(3P12.2) WILD-TYPE | 61 | 1972.3 (15.6) |
P value = 0.00576 (Fisher's exact test), Q value = 0.02
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 9(3P12.2) MUTATED | 0 | 6 | 31 | 293 |
DEL PEAK 9(3P12.2) WILD-TYPE | 2 | 10 | 90 | 426 |
P value = 4.07e-10 (logrank test), Q value = 4.6e-08
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 10(4Q34.3) MUTATED | 113 | 55 | 0.4 - 133.7 (31.3) |
DEL PEAK 10(4Q34.3) WILD-TYPE | 763 | 173 | 0.1 - 194.8 (36.4) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 10(4Q34.3) MUTATED | 26 | 10 | 48 | 26 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 428 | 93 | 142 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 10(4Q34.3) MUTATED | 29 | 15 | 62 | 7 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 451 | 112 | 196 | 8 |
P value = 0.00167 (Fisher's exact test), Q value = 0.0067
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 10(4Q34.3) MUTATED | 40 | 15 | 1 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 283 | 29 | 5 |
P value = 0.0139 (Fisher's exact test), Q value = 0.043
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 10(4Q34.3) MUTATED | 71 | 21 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 475 | 68 |
P value = 0.0333 (Fisher's exact test), Q value = 0.089
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 10(4Q34.3) MUTATED | 3 | 78 | 32 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 63 | 450 | 256 |
P value = 0.0585 (Fisher's exact test), Q value = 0.14
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 10(4Q34.3) MUTATED | 0 | 4 | 8 | 95 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 2 | 12 | 113 | 624 |
P value = 0.00425 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 11(5P15.33) MUTATED | 30 | 52.4 (14.6) |
DEL PEAK 11(5P15.33) WILD-TYPE | 846 | 60.4 (12.4) |
P value = 0.00028 (Fisher's exact test), Q value = 0.0014
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 11(5P15.33) MUTATED | 6 | 10 | 9 | 5 |
DEL PEAK 11(5P15.33) WILD-TYPE | 448 | 93 | 181 | 99 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0026
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 11(5P15.33) MUTATED | 7 | 11 | 13 | 0 |
DEL PEAK 11(5P15.33) WILD-TYPE | 473 | 116 | 245 | 15 |
P value = 0.00582 (Fisher's exact test), Q value = 0.02
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 11(5P15.33) MUTATED | 13 | 5 | 2 |
DEL PEAK 11(5P15.33) WILD-TYPE | 310 | 39 | 4 |
P value = 0.0994 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 11(5P15.33) MUTATED | 6 | 70.0 (38.5) |
DEL PEAK 11(5P15.33) WILD-TYPE | 137 | 88.5 (21.7) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 11(5P15.33) MUTATED | 10 | 8 | 13 |
DEL PEAK 11(5P15.33) WILD-TYPE | 56 | 520 | 275 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 12(6Q26) MUTATED | 93 | 43 | 58 | 35 |
DEL PEAK 12(6Q26) WILD-TYPE | 361 | 60 | 132 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 12(6Q26) MUTATED | 96 | 46 | 85 | 6 |
DEL PEAK 12(6Q26) WILD-TYPE | 384 | 81 | 173 | 9 |
P value = 0.0145 (Fisher's exact test), Q value = 0.044
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 12(6Q26) MUTATED | 94 | 16 | 5 |
DEL PEAK 12(6Q26) WILD-TYPE | 229 | 28 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 12(6Q26) MUTATED | 51 | 151 | 31 |
DEL PEAK 12(6Q26) WILD-TYPE | 15 | 377 | 257 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 12(6Q26) MUTATED | 23 | 25.0 (20.0) |
DEL PEAK 12(6Q26) WILD-TYPE | 83 | 32.4 (25.9) |
P value = 0.00084 (Fisher's exact test), Q value = 0.0037
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 12(6Q26) MUTATED | 0 | 6 | 16 | 203 |
DEL PEAK 12(6Q26) WILD-TYPE | 2 | 10 | 105 | 516 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00018
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 13(6Q26) MUTATED | 94 | 43 | 58 | 35 |
DEL PEAK 13(6Q26) WILD-TYPE | 360 | 60 | 132 | 69 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00018
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 13(6Q26) MUTATED | 97 | 46 | 85 | 6 |
DEL PEAK 13(6Q26) WILD-TYPE | 383 | 81 | 173 | 9 |
P value = 0.0146 (Fisher's exact test), Q value = 0.044
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 13(6Q26) MUTATED | 94 | 16 | 5 |
DEL PEAK 13(6Q26) WILD-TYPE | 229 | 28 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 13(6Q26) MUTATED | 51 | 151 | 32 |
DEL PEAK 13(6Q26) WILD-TYPE | 15 | 377 | 256 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 13(6Q26) MUTATED | 23 | 25.0 (20.0) |
DEL PEAK 13(6Q26) WILD-TYPE | 83 | 32.4 (25.9) |
P value = 0.00217 (Fisher's exact test), Q value = 0.0084
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 13(6Q26) MUTATED | 0 | 6 | 17 | 203 |
DEL PEAK 13(6Q26) WILD-TYPE | 2 | 10 | 104 | 516 |
P value = 0.00033 (logrank test), Q value = 0.0016
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 14(8P23.2) MUTATED | 184 | 69 | 0.1 - 137.1 (37.2) |
DEL PEAK 14(8P23.2) WILD-TYPE | 692 | 159 | 0.1 - 194.8 (34.7) |
P value = 0.00177 (Fisher's exact test), Q value = 0.0071
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 14(8P23.2) MUTATED | 74 | 25 | 46 | 33 |
DEL PEAK 14(8P23.2) WILD-TYPE | 380 | 78 | 144 | 71 |
P value = 0.00095 (Fisher's exact test), Q value = 0.0041
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 14(8P23.2) MUTATED | 78 | 31 | 69 | 6 |
DEL PEAK 14(8P23.2) WILD-TYPE | 402 | 96 | 189 | 9 |
P value = 0.0189 (Fisher's exact test), Q value = 0.055
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 14(8P23.2) MUTATED | 131 | 32 |
DEL PEAK 14(8P23.2) WILD-TYPE | 415 | 57 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 14(8P23.2) MUTATED | 12 | 154 | 18 |
DEL PEAK 14(8P23.2) WILD-TYPE | 54 | 374 | 270 |
P value = 0.00365 (Fisher's exact test), Q value = 0.013
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 14(8P23.2) MUTATED | 0 | 7 | 14 | 160 |
DEL PEAK 14(8P23.2) WILD-TYPE | 2 | 9 | 107 | 559 |
P value = 4.95e-13 (logrank test), Q value = 1.1e-10
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 15(9P23) MUTATED | 196 | 92 | 0.5 - 153.7 (36.1) |
DEL PEAK 15(9P23) WILD-TYPE | 680 | 136 | 0.1 - 194.8 (35.9) |
P value = 0.0296 (Wilcoxon-test), Q value = 0.081
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 15(9P23) MUTATED | 196 | 61.8 (12.0) |
DEL PEAK 15(9P23) WILD-TYPE | 680 | 59.7 (12.6) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 15(9P23) MUTATED | 63 | 16 | 68 | 46 |
DEL PEAK 15(9P23) WILD-TYPE | 391 | 87 | 122 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 15(9P23) MUTATED | 68 | 23 | 100 | 7 |
DEL PEAK 15(9P23) WILD-TYPE | 412 | 104 | 158 | 8 |
P value = 0.00204 (Fisher's exact test), Q value = 0.008
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 15(9P23) MUTATED | 73 | 20 | 3 |
DEL PEAK 15(9P23) WILD-TYPE | 250 | 24 | 3 |
P value = 0.000211 (Fisher's exact test), Q value = 0.0011
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 15(9P23) MUTATED | 126 | 38 |
DEL PEAK 15(9P23) WILD-TYPE | 420 | 51 |
P value = 0.000567 (Wilcoxon-test), Q value = 0.0026
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 15(9P23) MUTATED | 29 | 74.1 (34.3) |
DEL PEAK 15(9P23) WILD-TYPE | 114 | 91.1 (17.3) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 15(9P23) MUTATED | 10 | 152 | 36 |
DEL PEAK 15(9P23) WILD-TYPE | 56 | 376 | 252 |
P value = 0.0201 (Fisher's exact test), Q value = 0.057
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 15(9P23) MUTATED | 0 | 4 | 15 | 173 |
DEL PEAK 15(9P23) WILD-TYPE | 2 | 12 | 106 | 546 |
P value = 5.55e-16 (logrank test), Q value = 2.5e-13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 16(9P21.3) MUTATED | 206 | 99 | 0.5 - 153.7 (31.8) |
DEL PEAK 16(9P21.3) WILD-TYPE | 670 | 129 | 0.1 - 194.8 (36.5) |
P value = 0.0319 (Wilcoxon-test), Q value = 0.086
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 16(9P21.3) MUTATED | 207 | 61.6 (12.2) |
DEL PEAK 16(9P21.3) WILD-TYPE | 669 | 59.7 (12.6) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 16(9P21.3) MUTATED | 66 | 15 | 73 | 50 |
DEL PEAK 16(9P21.3) WILD-TYPE | 388 | 88 | 117 | 54 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 16(9P21.3) MUTATED | 71 | 22 | 108 | 8 |
DEL PEAK 16(9P21.3) WILD-TYPE | 409 | 105 | 150 | 7 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 16(9P21.3) MUTATED | 79 | 25 | 3 |
DEL PEAK 16(9P21.3) WILD-TYPE | 244 | 19 | 3 |
P value = 9.3e-06 (Fisher's exact test), Q value = 7.2e-05
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 16(9P21.3) MUTATED | 132 | 43 |
DEL PEAK 16(9P21.3) WILD-TYPE | 414 | 46 |
P value = 0.00135 (Wilcoxon-test), Q value = 0.0055
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 16(9P21.3) MUTATED | 30 | 75.0 (34.0) |
DEL PEAK 16(9P21.3) WILD-TYPE | 113 | 91.1 (17.4) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 16(9P21.3) MUTATED | 10 | 159 | 40 |
DEL PEAK 16(9P21.3) WILD-TYPE | 56 | 369 | 248 |
P value = 0.00591 (Fisher's exact test), Q value = 0.02
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 16(9P21.3) MUTATED | 0 | 4 | 15 | 185 |
DEL PEAK 16(9P21.3) WILD-TYPE | 2 | 12 | 106 | 534 |
P value = 0.0732 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 17(10Q23.31) MUTATED | 162 | 58.3 (14.1) |
DEL PEAK 17(10Q23.31) WILD-TYPE | 714 | 60.6 (12.1) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 17(10Q23.31) MUTATED | 52 | 32 | 53 | 26 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 402 | 71 | 137 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 17(10Q23.31) MUTATED | 54 | 33 | 70 | 7 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 426 | 94 | 188 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 17(10Q23.31) MUTATED | 49 | 96 | 19 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 17 | 432 | 269 |
P value = 0.068 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 17(10Q23.31) MUTATED | 17 | 23.5 (20.3) |
DEL PEAK 17(10Q23.31) WILD-TYPE | 89 | 32.2 (25.5) |
P value = 0.0772 (Fisher's exact test), Q value = 0.18
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 17(10Q23.31) MUTATED | 0 | 4 | 13 | 141 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 2 | 12 | 108 | 578 |
P value = 0.000445 (logrank test), Q value = 0.0021
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 18(11Q23.1) MUTATED | 70 | 28 | 0.4 - 123.6 (21.6) |
DEL PEAK 18(11Q23.1) WILD-TYPE | 806 | 200 | 0.1 - 194.8 (36.8) |
P value = 0.00352 (Wilcoxon-test), Q value = 0.013
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 18(11Q23.1) MUTATED | 70 | 64.0 (10.9) |
DEL PEAK 18(11Q23.1) WILD-TYPE | 806 | 59.8 (12.6) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 18(11Q23.1) MUTATED | 18 | 13 | 23 | 16 |
DEL PEAK 18(11Q23.1) WILD-TYPE | 436 | 90 | 167 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 18(11Q23.1) MUTATED | 19 | 15 | 34 | 3 |
DEL PEAK 18(11Q23.1) WILD-TYPE | 461 | 112 | 224 | 12 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00018
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 18(11Q23.1) MUTATED | 24 | 12 | 3 |
DEL PEAK 18(11Q23.1) WILD-TYPE | 299 | 32 | 3 |
P value = 0.111 (Fisher's exact test), Q value = 0.24
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 18(11Q23.1) MUTATED | 34 | 10 |
DEL PEAK 18(11Q23.1) WILD-TYPE | 512 | 79 |
P value = 0.0934 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 18(11Q23.1) MUTATED | 16 | 82.5 (25.4) |
DEL PEAK 18(11Q23.1) WILD-TYPE | 127 | 88.3 (22.4) |
P value = 0.00456 (Fisher's exact test), Q value = 0.016
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 18(11Q23.1) MUTATED | 9 | 30 | 32 |
DEL PEAK 18(11Q23.1) WILD-TYPE | 57 | 498 | 256 |
P value = 0.0145 (logrank test), Q value = 0.044
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 19(13Q13.2) MUTATED | 147 | 55 | 0.2 - 153.7 (37.1) |
DEL PEAK 19(13Q13.2) WILD-TYPE | 729 | 173 | 0.1 - 194.8 (35.2) |
P value = 5.17e-05 (Wilcoxon-test), Q value = 3e-04
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 19(13Q13.2) MUTATED | 149 | 55.7 (14.9) |
DEL PEAK 19(13Q13.2) WILD-TYPE | 727 | 61.1 (11.8) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 19(13Q13.2) MUTATED | 46 | 23 | 49 | 29 |
DEL PEAK 19(13Q13.2) WILD-TYPE | 408 | 80 | 141 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 19(13Q13.2) MUTATED | 48 | 25 | 68 | 8 |
DEL PEAK 19(13Q13.2) WILD-TYPE | 432 | 102 | 190 | 7 |
P value = 0.00122 (Fisher's exact test), Q value = 0.005
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 19(13Q13.2) MUTATED | 68 | 14 | 5 |
DEL PEAK 19(13Q13.2) WILD-TYPE | 255 | 30 | 1 |
P value = 0.00404 (Fisher's exact test), Q value = 0.014
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 590 |
DEL PEAK 19(13Q13.2) MUTATED | 65 | 84 |
DEL PEAK 19(13Q13.2) WILD-TYPE | 227 | 506 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 19(13Q13.2) MUTATED | 44 | 80 | 25 |
DEL PEAK 19(13Q13.2) WILD-TYPE | 22 | 448 | 263 |
P value = 0.0963 (Fisher's exact test), Q value = 0.22
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 19(13Q13.2) MUTATED | 0 | 4 | 12 | 128 |
DEL PEAK 19(13Q13.2) WILD-TYPE | 2 | 12 | 109 | 591 |
P value = 5.96e-10 (logrank test), Q value = 5.3e-08
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 20(14Q31.1) MUTATED | 278 | 112 | 0.1 - 133.7 (33.1) |
DEL PEAK 20(14Q31.1) WILD-TYPE | 598 | 116 | 0.1 - 194.8 (37.1) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 20(14Q31.1) MUTATED | 103 | 31 | 81 | 56 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 351 | 72 | 109 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 20(14Q31.1) MUTATED | 111 | 41 | 122 | 5 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 369 | 86 | 136 | 10 |
P value = 0.00404 (Fisher's exact test), Q value = 0.014
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 20(14Q31.1) MUTATED | 110 | 25 | 4 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 213 | 19 | 2 |
P value = 4.66e-05 (Fisher's exact test), Q value = 0.00027
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 20(14Q31.1) MUTATED | 185 | 51 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 361 | 38 |
P value = 0.115 (Fisher's exact test), Q value = 0.24
nPatients | NO | YES |
---|---|---|
ALL | 408 | 3 |
DEL PEAK 20(14Q31.1) MUTATED | 85 | 2 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 323 | 1 |
P value = 0.000159 (Wilcoxon-test), Q value = 0.00084
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 20(14Q31.1) MUTATED | 36 | 71.9 (36.3) |
DEL PEAK 20(14Q31.1) WILD-TYPE | 107 | 93.0 (12.1) |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 20(14Q31.1) MUTATED | 3 | 228 | 48 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 63 | 300 | 240 |
P value = 0.00978 (Wilcoxon-test), Q value = 0.032
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 20(14Q31.1) MUTATED | 15 | 1983.5 (14.8) |
DEL PEAK 20(14Q31.1) WILD-TYPE | 59 | 1971.2 (15.4) |
P value = 0.0174 (Fisher's exact test), Q value = 0.051
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 16 | 121 | 719 |
DEL PEAK 20(14Q31.1) MUTATED | 0 | 3 | 26 | 243 |
DEL PEAK 20(14Q31.1) WILD-TYPE | 2 | 13 | 95 | 476 |
P value = 4.66e-05 (logrank test), Q value = 0.00027
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 21(16Q23.3) MUTATED | 37 | 18 | 0.1 - 90.5 (30.2) |
DEL PEAK 21(16Q23.3) WILD-TYPE | 839 | 210 | 0.1 - 194.8 (36.4) |
P value = 0.00505 (Fisher's exact test), Q value = 0.017
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 21(16Q23.3) MUTATED | 11 | 4 | 12 | 10 |
DEL PEAK 21(16Q23.3) WILD-TYPE | 443 | 99 | 178 | 94 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00029
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 21(16Q23.3) MUTATED | 12 | 4 | 16 | 5 |
DEL PEAK 21(16Q23.3) WILD-TYPE | 468 | 123 | 242 | 10 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0026
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 21(16Q23.3) MUTATED | 13 | 7 | 2 |
DEL PEAK 21(16Q23.3) WILD-TYPE | 310 | 37 | 4 |
P value = 5.05e-12 (logrank test), Q value = 7.5e-10
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 876 | 228 | 0.1 - 194.8 (35.9) |
DEL PEAK 22(19P13.3) MUTATED | 43 | 24 | 0.9 - 109.9 (18.2) |
DEL PEAK 22(19P13.3) WILD-TYPE | 833 | 204 | 0.1 - 194.8 (37.0) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00013
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 22(19P13.3) MUTATED | 10 | 1 | 18 | 11 |
DEL PEAK 22(19P13.3) WILD-TYPE | 444 | 102 | 172 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 22(19P13.3) MUTATED | 12 | 2 | 25 | 4 |
DEL PEAK 22(19P13.3) WILD-TYPE | 468 | 125 | 233 | 11 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00034
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 22(19P13.3) MUTATED | 11 | 7 | 3 |
DEL PEAK 22(19P13.3) WILD-TYPE | 312 | 37 | 3 |
P value = 0.0688 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 546 | 89 |
DEL PEAK 22(19P13.3) MUTATED | 18 | 7 |
DEL PEAK 22(19P13.3) WILD-TYPE | 528 | 82 |
P value = 0.00517 (Wilcoxon-test), Q value = 0.018
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 143 | 87.7 (22.8) |
DEL PEAK 22(19P13.3) MUTATED | 12 | 67.5 (39.3) |
DEL PEAK 22(19P13.3) WILD-TYPE | 131 | 89.5 (19.8) |
P value = 0.0108 (Fisher's exact test), Q value = 0.034
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 22(19P13.3) MUTATED | 3 | 17 | 23 |
DEL PEAK 22(19P13.3) WILD-TYPE | 63 | 511 | 265 |
P value = 0.00226 (Wilcoxon-test), Q value = 0.0087
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 876 | 60.1 (12.5) |
DEL PEAK 23(XP22.2) MUTATED | 125 | 56.4 (13.9) |
DEL PEAK 23(XP22.2) WILD-TYPE | 751 | 60.8 (12.2) |
P value = 9e-05 (Fisher's exact test), Q value = 0.00049
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 454 | 103 | 190 | 104 |
DEL PEAK 23(XP22.2) MUTATED | 41 | 23 | 39 | 15 |
DEL PEAK 23(XP22.2) WILD-TYPE | 413 | 80 | 151 | 89 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00024
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 480 | 127 | 258 | 15 |
DEL PEAK 23(XP22.2) MUTATED | 45 | 26 | 51 | 3 |
DEL PEAK 23(XP22.2) WILD-TYPE | 435 | 101 | 207 | 12 |
P value = 0.0419 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 323 | 44 | 6 |
DEL PEAK 23(XP22.2) MUTATED | 47 | 12 | 2 |
DEL PEAK 23(XP22.2) WILD-TYPE | 276 | 32 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 7.2e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 288 |
DEL PEAK 23(XP22.2) MUTATED | 39 | 53 | 33 |
DEL PEAK 23(XP22.2) WILD-TYPE | 27 | 475 | 255 |
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIPAN-TP/22533781/transformed.cor.cli.txt
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Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIPAN-TP/22506733/KIPAN-TP.merged_data.txt
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Number of patients = 882
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Number of significantly focal cnvs = 32
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Number of selected clinical features = 14
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Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.