This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 29 focal events and 12 molecular subtypes across 528 patients, 205 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q24.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_1q32.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_3q26.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_4q32.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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amp_5q35.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_8q24.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_10p14 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_xq11.2 cnv correlated to 'CN_CNMF'.
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amp_xq28 cnv correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_1p31.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_1q44 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_3p25.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p22.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p12.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_3p12.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_3p11.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_3q11.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_4q34.3 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_6q26 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_9p21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_13q13.3 cnv correlated to 'MRNA_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_14q31.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
del 3p25 3 | 463 (88%) | 65 |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
2e-05 (8e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
5e-05 (0.000171) |
1e-05 (4.46e-05) |
0.00191 (0.00482) |
0.012 (0.0247) |
del 3p22 2 | 465 (88%) | 63 |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
3e-05 (0.000116) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
4e-05 (0.000147) |
1e-05 (4.46e-05) |
0.00317 (0.00756) |
0.0246 (0.0451) |
del 9p21 3 | 159 (30%) | 369 |
0.00256 (0.00619) |
0.0164 (0.0316) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00097 (0.0027) |
0.00603 (0.0133) |
del 9p23 | 152 (29%) | 376 |
0.00638 (0.0139) |
0.0361 (0.0637) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00189 (0.0048) |
0.0646 (0.107) |
del 1p31 1 | 77 (15%) | 451 |
0.0046 (0.0103) |
0.00618 (0.0135) |
0.0139 (0.028) |
0.183 (0.246) |
0.00113 (0.0031) |
5e-05 (0.000171) |
2e-05 (8e-05) |
3e-05 (0.000116) |
1e-05 (4.46e-05) |
0.00181 (0.00463) |
0.0126 (0.0259) |
0.258 (0.324) |
del 14q31 1 | 228 (43%) | 300 |
2e-05 (8e-05) |
0.00041 (0.00122) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0311 (0.0561) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.232 (0.299) |
0.145 (0.204) |
amp 3q26 32 | 87 (16%) | 441 |
0.0907 (0.144) |
0.119 (0.175) |
0.00037 (0.00113) |
1e-05 (4.46e-05) |
2e-05 (8e-05) |
2e-05 (8e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
4e-05 (0.000147) |
0.00205 (0.0051) |
0.241 (0.308) |
amp 8q24 22 | 79 (15%) | 449 |
0.33 (0.401) |
0.102 (0.157) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.116 (0.172) |
del 1q44 | 44 (8%) | 484 |
0.0147 (0.0291) |
0.011 (0.0231) |
0.0001 (0.000328) |
0.0133 (0.027) |
0.0211 (0.0391) |
0.00337 (0.00792) |
0.00036 (0.00112) |
5e-05 (0.000171) |
0.11 (0.164) |
0.0225 (0.0414) |
0.357 (0.425) |
0.939 (0.95) |
del 6q26 | 151 (29%) | 377 |
0.0367 (0.0646) |
0.0973 (0.151) |
1e-05 (4.46e-05) |
0.206 (0.271) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00067 (0.00193) |
0.00037 (0.00113) |
0.00404 (0.00913) |
0.00362 (0.00834) |
0.0488 (0.0833) |
0.152 (0.214) |
del 6q26 | 151 (29%) | 377 |
0.0381 (0.0662) |
0.0977 (0.151) |
1e-05 (4.46e-05) |
0.205 (0.271) |
2e-05 (8e-05) |
1e-05 (4.46e-05) |
0.00048 (0.00142) |
0.0001 (0.000328) |
0.0023 (0.00568) |
0.00365 (0.00836) |
0.0484 (0.0831) |
0.153 (0.214) |
amp 7q31 2 | 175 (33%) | 353 |
0.585 (0.642) |
0.714 (0.757) |
1e-05 (4.46e-05) |
0.0382 (0.0662) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
8e-05 (0.000268) |
0.00149 (0.00393) |
0.00744 (0.016) |
0.0113 (0.0234) |
0.115 (0.171) |
0.908 (0.926) |
del 1p36 13 | 99 (19%) | 429 |
0.00103 (0.00284) |
0.00165 (0.00425) |
0.158 (0.221) |
0.44 (0.508) |
0.00011 (0.000358) |
0.00234 (0.00573) |
4e-05 (0.000147) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.00325 (0.00769) |
0.0953 (0.149) |
0.085 (0.135) |
del 3p12 3 | 339 (64%) | 189 |
0.00879 (0.0188) |
0.0162 (0.0313) |
1e-05 (4.46e-05) |
0.0158 (0.0307) |
0.17 (0.232) |
0.0664 (0.11) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
0.0207 (0.0385) |
0.0373 (0.0652) |
0.168 (0.229) |
0.801 (0.832) |
del 13q13 3 | 81 (15%) | 447 |
0.0196 (0.0368) |
0.0851 (0.135) |
0.0538 (0.09) |
0.00201 (0.00503) |
1e-05 (4.46e-05) |
0.00121 (0.00329) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
1e-05 (4.46e-05) |
5e-05 (0.000171) |
0.104 (0.158) |
0.339 (0.41) |
del 2q37 3 | 50 (9%) | 478 |
0.0041 (0.00921) |
0.00041 (0.00122) |
0.00151 (0.00395) |
0.0178 (0.034) |
0.416 (0.484) |
0.238 (0.305) |
0.00024 (0.000759) |
2e-05 (8e-05) |
0.0817 (0.132) |
0.0352 (0.0624) |
0.299 (0.369) |
0.341 (0.41) |
del 4q34 3 | 78 (15%) | 450 |
0.215 (0.281) |
0.494 (0.561) |
0.122 (0.176) |
0.00255 (0.00619) |
8e-05 (0.000268) |
0.00344 (0.00803) |
0.00926 (0.0196) |
1e-05 (4.46e-05) |
0.286 (0.356) |
0.0196 (0.0368) |
0.244 (0.31) |
0.00361 (0.00834) |
amp 5q35 1 | 332 (63%) | 196 |
0.0332 (0.0596) |
0.0492 (0.0836) |
1e-05 (4.46e-05) |
0.529 (0.59) |
0.0714 (0.117) |
0.00087 (0.00246) |
5e-05 (0.000171) |
5e-05 (0.000171) |
0.108 (0.163) |
0.128 (0.185) |
0.7 (0.749) |
0.76 (0.799) |
del 8p23 2 | 154 (29%) | 374 |
0.312 (0.38) |
0.245 (0.311) |
0.0113 (0.0234) |
0.209 (0.275) |
0.0137 (0.0278) |
0.728 (0.77) |
5e-05 (0.000171) |
4e-05 (0.000147) |
0.00124 (0.00335) |
0.00052 (0.00152) |
0.135 (0.194) |
0.552 (0.609) |
del 10q23 31 | 96 (18%) | 432 |
0.553 (0.609) |
0.548 (0.607) |
0.00658 (0.0142) |
0.0458 (0.0789) |
0.685 (0.743) |
0.0144 (0.0288) |
0.228 (0.294) |
0.00029 (0.000909) |
0.00039 (0.00118) |
0.00137 (0.00364) |
0.93 (0.945) |
0.519 (0.583) |
amp 10p14 | 20 (4%) | 508 |
0.217 (0.283) |
0.775 (0.813) |
0.0147 (0.0291) |
0.514 (0.579) |
0.0152 (0.0298) |
0.0671 (0.11) |
0.00279 (0.0067) |
3e-05 (0.000116) |
0.115 (0.171) |
0.0271 (0.0495) |
1 (1.00) |
0.141 (0.201) |
amp 1q24 1 | 62 (12%) | 466 |
0.357 (0.425) |
0.784 (0.819) |
1e-05 (4.46e-05) |
0.204 (0.271) |
0.368 (0.437) |
0.401 (0.468) |
0.00092 (0.00258) |
0.00376 (0.00855) |
0.0007 (0.002) |
0.155 (0.216) |
0.513 (0.579) |
0.829 (0.859) |
amp 1q32 1 | 62 (12%) | 466 |
0.466 (0.534) |
0.9 (0.924) |
1e-05 (4.46e-05) |
0.0718 (0.117) |
0.167 (0.229) |
0.121 (0.176) |
0.00012 (0.000387) |
0.00161 (0.00418) |
0.00055 (0.00159) |
0.179 (0.242) |
0.388 (0.455) |
0.903 (0.924) |
del 3q11 2 | 161 (30%) | 367 |
0.457 (0.525) |
0.164 (0.226) |
1e-05 (4.46e-05) |
0.118 (0.174) |
0.857 (0.885) |
0.137 (0.196) |
0.00133 (0.00356) |
2e-05 (8e-05) |
0.00606 (0.0133) |
0.931 (0.945) |
0.701 (0.749) |
0.705 (0.75) |
amp 4q32 1 | 16 (3%) | 512 |
0.0196 (0.0368) |
0.117 (0.172) |
0.346 (0.416) |
0.0932 (0.146) |
0.103 (0.157) |
0.0106 (0.0225) |
0.0152 (0.0298) |
0.304 (0.372) |
0.288 (0.356) |
0.875 (0.9) |
||
del 3p12 2 | 305 (58%) | 223 |
0.103 (0.157) |
0.064 (0.106) |
1e-05 (4.46e-05) |
0.19 (0.254) |
0.274 (0.343) |
0.191 (0.255) |
4e-05 (0.000147) |
1e-05 (4.46e-05) |
0.0739 (0.12) |
0.249 (0.314) |
0.457 (0.525) |
0.654 (0.711) |
del 3p11 1 | 237 (45%) | 291 |
0.377 (0.446) |
0.38 (0.446) |
1e-05 (4.46e-05) |
0.0508 (0.0858) |
0.626 (0.685) |
0.301 (0.37) |
0.00018 (0.000575) |
2e-05 (8e-05) |
0.168 (0.229) |
0.961 (0.969) |
0.693 (0.748) |
0.528 (0.59) |
amp xq28 | 37 (7%) | 491 |
0.511 (0.579) |
0.701 (0.749) |
0.439 (0.508) |
0.694 (0.748) |
0.0195 (0.0368) |
0.093 (0.146) |
0.38 (0.446) |
0.0343 (0.0612) |
0.0838 (0.134) |
0.219 (0.285) |
0.792 (0.825) |
0.239 (0.306) |
amp xq11 2 | 29 (5%) | 499 |
0.18 (0.243) |
0.161 (0.223) |
0.0306 (0.0555) |
0.486 (0.555) |
0.144 (0.204) |
0.0526 (0.0885) |
0.109 (0.164) |
0.309 (0.378) |
0.639 (0.697) |
0.287 (0.356) |
0.541 (0.602) |
0.752 (0.793) |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 1(1Q24.1) MUTATED | 5 | 4 | 42 | 9 | 2 | 0 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 56 | 76 | 114 | 73 | 78 | 69 |
P value = 0.00092 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 1(1Q24.1) MUTATED | 5 | 15 | 7 | 32 | 1 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 76 | 155 | 74 | 121 | 39 |
P value = 0.00376 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 1(1Q24.1) MUTATED | 7 | 3 | 18 | 25 | 7 | 0 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 110 | 30 | 165 | 107 | 28 | 25 |
P value = 7e-04 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
AMP PEAK 1(1Q24.1) MUTATED | 4 | 9 | 16 | 26 | 5 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 87 | 48 | 170 | 93 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 2(1Q32.1) MUTATED | 4 | 5 | 44 | 8 | 0 | 1 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 57 | 75 | 112 | 74 | 80 | 68 |
P value = 0.00012 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 2(1Q32.1) MUTATED | 3 | 14 | 8 | 33 | 2 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 78 | 156 | 73 | 120 | 38 |
P value = 0.00161 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 2(1Q32.1) MUTATED | 7 | 2 | 18 | 26 | 7 | 0 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 110 | 31 | 165 | 106 | 28 | 25 |
P value = 0.00055 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
AMP PEAK 2(1Q32.1) MUTATED | 4 | 8 | 16 | 27 | 5 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 87 | 49 | 170 | 92 | 52 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 3(3Q26.32) MUTATED | 11 | 8 | 40 | 5 | 17 | 6 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 50 | 72 | 116 | 77 | 63 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
AMP PEAK 3(3Q26.32) MUTATED | 10 | 13 | 27 | 1 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 57 | 57 | 69 | 80 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 3(3Q26.32) MUTATED | 19 | 9 | 32 | 10 | 10 | 1 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 69 | 77 | 58 | 72 | 82 | 32 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 3(3Q26.32) MUTATED | 13 | 23 | 29 | 16 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 122 | 89 | 56 | 123 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 3(3Q26.32) MUTATED | 18 | 12 | 11 | 42 | 4 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 63 | 158 | 70 | 111 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 4 | 14 | 43 | 8 | 4 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 103 | 29 | 169 | 89 | 27 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
AMP PEAK 3(3Q26.32) MUTATED | 10 | 13 | 14 | 37 | 10 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 81 | 44 | 172 | 82 | 47 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
AMP PEAK 3(3Q26.32) MUTATED | 35 | 17 | 32 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 138 | 192 | 96 |
P value = 0.00205 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
AMP PEAK 3(3Q26.32) MUTATED | 2 | 1 | 3 | 12 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 37 | 20 | 41 | 26 |
P value = 0.0196 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 4(4Q32.1) MUTATED | 2 | 3 | 5 | 0 | 0 | 6 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 59 | 77 | 151 | 82 | 80 | 63 |
P value = 0.0106 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 4(4Q32.1) MUTATED | 5 | 0 | 2 | 4 | 0 | 4 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 112 | 33 | 181 | 128 | 35 | 21 |
P value = 0.0152 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
AMP PEAK 4(4Q32.1) MUTATED | 3 | 4 | 1 | 7 | 1 |
AMP PEAK 4(4Q32.1) WILD-TYPE | 88 | 53 | 185 | 112 | 56 |
P value = 0.0332 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
AMP PEAK 5(5Q35.1) MUTATED | 19 | 15 | 3 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 12 | 10 | 11 |
P value = 0.0492 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
AMP PEAK 5(5Q35.1) MUTATED | 8 | 5 | 0 | 9 | 7 | 5 | 3 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 3 | 7 | 4 | 2 | 6 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 5(5Q35.1) MUTATED | 61 | 48 | 92 | 47 | 56 | 28 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 0 | 32 | 64 | 35 | 24 | 41 |
P value = 0.00087 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 5(5Q35.1) MUTATED | 84 | 68 | 43 | 106 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 51 | 44 | 42 | 33 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 5(5Q35.1) MUTATED | 34 | 113 | 45 | 111 | 27 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 47 | 57 | 36 | 42 | 13 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 5(5Q35.1) MUTATED | 79 | 15 | 121 | 84 | 26 | 5 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 38 | 18 | 62 | 48 | 9 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 6(7Q31.2) MUTATED | 39 | 34 | 55 | 10 | 23 | 14 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 22 | 46 | 101 | 72 | 57 | 55 |
P value = 0.0382 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
AMP PEAK 6(7Q31.2) MUTATED | 12 | 24 | 35 | 20 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 55 | 46 | 61 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 6(7Q31.2) MUTATED | 32 | 21 | 52 | 23 | 23 | 5 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 56 | 65 | 38 | 59 | 69 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 6(7Q31.2) MUTATED | 36 | 50 | 41 | 29 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 99 | 62 | 44 | 110 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 6(7Q31.2) MUTATED | 26 | 36 | 27 | 72 | 12 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 55 | 134 | 54 | 81 | 28 |
P value = 0.00149 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 6(7Q31.2) MUTATED | 38 | 11 | 43 | 61 | 14 | 6 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 79 | 22 | 140 | 71 | 21 | 19 |
P value = 0.00744 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
AMP PEAK 6(7Q31.2) MUTATED | 27 | 27 | 53 | 51 | 14 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 64 | 30 | 133 | 68 | 43 |
P value = 0.0113 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
AMP PEAK 6(7Q31.2) MUTATED | 62 | 56 | 54 |
AMP PEAK 6(7Q31.2) WILD-TYPE | 111 | 153 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 7(8Q24.22) MUTATED | 7 | 12 | 43 | 5 | 10 | 2 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 54 | 68 | 113 | 77 | 70 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
AMP PEAK 7(8Q24.22) MUTATED | 4 | 15 | 31 | 3 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 63 | 55 | 65 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 7(8Q24.22) MUTATED | 13 | 5 | 36 | 7 | 12 | 1 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 75 | 81 | 54 | 75 | 80 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
AMP PEAK 7(8Q24.22) MUTATED | 9 | 31 | 25 | 9 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 126 | 81 | 60 | 130 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 7(8Q24.22) MUTATED | 4 | 6 | 13 | 51 | 4 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 77 | 164 | 68 | 102 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 7(8Q24.22) MUTATED | 9 | 2 | 8 | 54 | 4 | 1 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 108 | 31 | 175 | 78 | 31 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
AMP PEAK 7(8Q24.22) MUTATED | 11 | 12 | 10 | 39 | 5 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 80 | 45 | 176 | 80 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
AMP PEAK 7(8Q24.22) MUTATED | 41 | 13 | 23 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 132 | 196 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
AMP PEAK 7(8Q24.22) MUTATED | 3 | 1 | 0 | 15 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 36 | 20 | 44 | 23 |
P value = 0.0147 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 8(10P14) MUTATED | 3 | 2 | 12 | 0 | 3 | 0 |
AMP PEAK 8(10P14) WILD-TYPE | 58 | 78 | 144 | 82 | 77 | 69 |
P value = 0.0152 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 8(10P14) MUTATED | 1 | 2 | 10 | 2 | 2 | 2 |
AMP PEAK 8(10P14) WILD-TYPE | 87 | 84 | 80 | 80 | 90 | 31 |
P value = 0.00279 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
AMP PEAK 8(10P14) MUTATED | 3 | 1 | 3 | 13 | 0 |
AMP PEAK 8(10P14) WILD-TYPE | 78 | 169 | 78 | 140 | 40 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 8(10P14) MUTATED | 2 | 2 | 0 | 14 | 2 | 0 |
AMP PEAK 8(10P14) WILD-TYPE | 115 | 31 | 183 | 118 | 33 | 25 |
P value = 0.0271 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
AMP PEAK 8(10P14) MUTATED | 11 | 3 | 6 |
AMP PEAK 8(10P14) WILD-TYPE | 162 | 206 | 122 |
P value = 0.0306 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
AMP PEAK 9(XQ11.2) MUTATED | 9 | 5 | 5 | 2 | 3 | 5 |
AMP PEAK 9(XQ11.2) WILD-TYPE | 52 | 75 | 151 | 80 | 77 | 64 |
P value = 0.0195 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
AMP PEAK 10(XQ28) MUTATED | 8 | 1 | 11 | 8 | 6 | 0 |
AMP PEAK 10(XQ28) WILD-TYPE | 80 | 85 | 79 | 74 | 86 | 33 |
P value = 0.0343 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
AMP PEAK 10(XQ28) MUTATED | 5 | 2 | 9 | 14 | 6 | 0 |
AMP PEAK 10(XQ28) WILD-TYPE | 112 | 31 | 174 | 118 | 29 | 25 |
P value = 0.00103 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 1(1P36.13) MUTATED | 2 | 7 | 8 |
DEL PEAK 1(1P36.13) WILD-TYPE | 29 | 18 | 6 |
P value = 0.00165 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 1(1P36.13) MUTATED | 0 | 2 | 2 | 4 | 1 | 1 | 7 |
DEL PEAK 1(1P36.13) WILD-TYPE | 11 | 10 | 2 | 7 | 12 | 8 | 3 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 1(1P36.13) MUTATED | 24 | 6 | 27 | 17 | 10 | 5 |
DEL PEAK 1(1P36.13) WILD-TYPE | 64 | 80 | 63 | 65 | 82 | 28 |
P value = 0.00234 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 1(1P36.13) MUTATED | 16 | 29 | 24 | 20 |
DEL PEAK 1(1P36.13) WILD-TYPE | 119 | 83 | 61 | 119 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 1(1P36.13) MUTATED | 26 | 22 | 5 | 41 | 5 |
DEL PEAK 1(1P36.13) WILD-TYPE | 55 | 148 | 76 | 112 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 1(1P36.13) MUTATED | 11 | 6 | 23 | 38 | 9 | 12 |
DEL PEAK 1(1P36.13) WILD-TYPE | 106 | 27 | 160 | 94 | 26 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 1(1P36.13) MUTATED | 16 | 9 | 22 | 48 | 4 |
DEL PEAK 1(1P36.13) WILD-TYPE | 75 | 48 | 164 | 71 | 53 |
P value = 0.00325 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 1(1P36.13) MUTATED | 41 | 26 | 32 |
DEL PEAK 1(1P36.13) WILD-TYPE | 132 | 183 | 96 |
P value = 0.0046 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 2(1P31.1) MUTATED | 2 | 5 | 7 |
DEL PEAK 2(1P31.1) WILD-TYPE | 29 | 20 | 7 |
P value = 0.00618 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 2(1P31.1) MUTATED | 0 | 3 | 2 | 1 | 1 | 1 | 6 |
DEL PEAK 2(1P31.1) WILD-TYPE | 11 | 9 | 2 | 10 | 12 | 8 | 4 |
P value = 0.0139 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 2(1P31.1) MUTATED | 4 | 8 | 29 | 7 | 12 | 17 |
DEL PEAK 2(1P31.1) WILD-TYPE | 57 | 72 | 127 | 75 | 68 | 52 |
P value = 0.00113 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 2(1P31.1) MUTATED | 20 | 7 | 21 | 11 | 5 | 4 |
DEL PEAK 2(1P31.1) WILD-TYPE | 68 | 79 | 69 | 71 | 87 | 29 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 2(1P31.1) MUTATED | 6 | 23 | 21 | 18 |
DEL PEAK 2(1P31.1) WILD-TYPE | 129 | 89 | 64 | 121 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 2(1P31.1) MUTATED | 24 | 17 | 3 | 29 | 4 |
DEL PEAK 2(1P31.1) WILD-TYPE | 57 | 153 | 78 | 124 | 36 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 2(1P31.1) MUTATED | 11 | 6 | 16 | 28 | 4 | 12 |
DEL PEAK 2(1P31.1) WILD-TYPE | 106 | 27 | 167 | 104 | 31 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 2(1P31.1) MUTATED | 10 | 6 | 18 | 39 | 4 |
DEL PEAK 2(1P31.1) WILD-TYPE | 81 | 51 | 168 | 80 | 53 |
P value = 0.00181 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 2(1P31.1) MUTATED | 23 | 22 | 32 |
DEL PEAK 2(1P31.1) WILD-TYPE | 150 | 187 | 96 |
P value = 0.0126 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 2(1P31.1) MUTATED | 6 | 0 | 2 | 9 |
DEL PEAK 2(1P31.1) WILD-TYPE | 33 | 21 | 42 | 29 |
P value = 0.0147 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 3(1Q44) MUTATED | 2 | 1 | 5 |
DEL PEAK 3(1Q44) WILD-TYPE | 29 | 24 | 9 |
P value = 0.011 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 3(1Q44) MUTATED | 0 | 1 | 0 | 0 | 1 | 1 | 5 |
DEL PEAK 3(1Q44) WILD-TYPE | 11 | 11 | 4 | 11 | 12 | 8 | 5 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 3(1Q44) MUTATED | 1 | 5 | 6 | 5 | 12 | 15 |
DEL PEAK 3(1Q44) WILD-TYPE | 60 | 75 | 150 | 77 | 68 | 54 |
P value = 0.0133 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 3(1Q44) MUTATED | 11 | 1 | 7 | 6 |
DEL PEAK 3(1Q44) WILD-TYPE | 56 | 69 | 89 | 75 |
P value = 0.0211 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 3(1Q44) MUTATED | 14 | 8 | 8 | 4 | 2 | 2 |
DEL PEAK 3(1Q44) WILD-TYPE | 74 | 78 | 82 | 78 | 90 | 31 |
P value = 0.00337 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 3(1Q44) MUTATED | 5 | 10 | 15 | 8 |
DEL PEAK 3(1Q44) WILD-TYPE | 130 | 102 | 70 | 131 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 3(1Q44) MUTATED | 17 | 12 | 1 | 11 | 3 |
DEL PEAK 3(1Q44) WILD-TYPE | 64 | 158 | 80 | 142 | 37 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 3(1Q44) MUTATED | 6 | 1 | 14 | 10 | 2 | 11 |
DEL PEAK 3(1Q44) WILD-TYPE | 111 | 32 | 169 | 122 | 33 | 14 |
P value = 0.0225 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 3(1Q44) MUTATED | 11 | 14 | 19 |
DEL PEAK 3(1Q44) WILD-TYPE | 162 | 195 | 109 |
P value = 0.0041 (Fisher's exact test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 4(2Q37.3) MUTATED | 1 | 4 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 30 | 21 | 8 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 4 | 0 | 0 | 1 | 0 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 11 | 8 | 4 | 11 | 12 | 9 | 4 |
P value = 0.00151 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 4(2Q37.3) MUTATED | 1 | 5 | 19 | 11 | 2 | 12 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 60 | 75 | 137 | 71 | 78 | 57 |
P value = 0.0178 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 4(2Q37.3) MUTATED | 11 | 5 | 11 | 2 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 56 | 65 | 85 | 79 |
P value = 0.00024 (Fisher's exact test), Q value = 0.00076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 4(2Q37.3) MUTATED | 14 | 6 | 14 | 14 | 1 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 67 | 164 | 67 | 139 | 39 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 4(2Q37.3) MUTATED | 13 | 1 | 7 | 18 | 1 | 9 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 104 | 32 | 176 | 114 | 34 | 16 |
P value = 0.0352 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 4(2Q37.3) MUTATED | 16 | 13 | 19 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 157 | 196 | 109 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 5(3P25.3) MUTATED | 30 | 23 | 4 |
DEL PEAK 5(3P25.3) WILD-TYPE | 1 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 5(3P25.3) MUTATED | 11 | 11 | 1 | 11 | 12 | 9 | 2 |
DEL PEAK 5(3P25.3) WILD-TYPE | 0 | 1 | 3 | 0 | 1 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 5(3P25.3) MUTATED | 59 | 46 | 150 | 77 | 77 | 54 |
DEL PEAK 5(3P25.3) WILD-TYPE | 2 | 34 | 6 | 5 | 3 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 5(3P25.3) MUTATED | 49 | 57 | 93 | 79 |
DEL PEAK 5(3P25.3) WILD-TYPE | 18 | 13 | 3 | 2 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 5(3P25.3) MUTATED | 66 | 85 | 82 | 76 | 78 | 30 |
DEL PEAK 5(3P25.3) WILD-TYPE | 22 | 1 | 8 | 6 | 14 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 5(3P25.3) MUTATED | 114 | 107 | 62 | 134 |
DEL PEAK 5(3P25.3) WILD-TYPE | 21 | 5 | 23 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 5(3P25.3) MUTATED | 41 | 167 | 74 | 140 | 38 |
DEL PEAK 5(3P25.3) WILD-TYPE | 40 | 3 | 7 | 13 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 5(3P25.3) MUTATED | 109 | 20 | 179 | 115 | 35 | 2 |
DEL PEAK 5(3P25.3) WILD-TYPE | 8 | 13 | 4 | 17 | 0 | 23 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 5(3P25.3) MUTATED | 75 | 50 | 178 | 92 | 51 |
DEL PEAK 5(3P25.3) WILD-TYPE | 16 | 7 | 8 | 27 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 5(3P25.3) MUTATED | 142 | 202 | 102 |
DEL PEAK 5(3P25.3) WILD-TYPE | 31 | 7 | 26 |
P value = 0.00191 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 5(3P25.3) MUTATED | 27 | 16 | 43 | 30 |
DEL PEAK 5(3P25.3) WILD-TYPE | 12 | 5 | 1 | 8 |
P value = 0.012 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 40 | 52 | 28 | 22 |
DEL PEAK 5(3P25.3) MUTATED | 28 | 41 | 25 | 22 |
DEL PEAK 5(3P25.3) WILD-TYPE | 12 | 11 | 3 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 6(3P22.2) MUTATED | 30 | 23 | 4 |
DEL PEAK 6(3P22.2) WILD-TYPE | 1 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 6(3P22.2) MUTATED | 11 | 11 | 1 | 11 | 12 | 9 | 2 |
DEL PEAK 6(3P22.2) WILD-TYPE | 0 | 1 | 3 | 0 | 1 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 6(3P22.2) MUTATED | 60 | 45 | 151 | 77 | 78 | 54 |
DEL PEAK 6(3P22.2) WILD-TYPE | 1 | 35 | 5 | 5 | 2 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 6(3P22.2) MUTATED | 48 | 57 | 93 | 79 |
DEL PEAK 6(3P22.2) WILD-TYPE | 19 | 13 | 3 | 2 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 6(3P22.2) MUTATED | 66 | 85 | 84 | 76 | 78 | 30 |
DEL PEAK 6(3P22.2) WILD-TYPE | 22 | 1 | 6 | 6 | 14 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 6(3P22.2) MUTATED | 114 | 107 | 65 | 133 |
DEL PEAK 6(3P22.2) WILD-TYPE | 21 | 5 | 20 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 6(3P22.2) MUTATED | 41 | 167 | 74 | 141 | 39 |
DEL PEAK 6(3P22.2) WILD-TYPE | 40 | 3 | 7 | 12 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 6(3P22.2) MUTATED | 110 | 19 | 179 | 116 | 35 | 3 |
DEL PEAK 6(3P22.2) WILD-TYPE | 7 | 14 | 4 | 16 | 0 | 22 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 6(3P22.2) MUTATED | 74 | 51 | 179 | 93 | 51 |
DEL PEAK 6(3P22.2) WILD-TYPE | 17 | 6 | 7 | 26 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 6(3P22.2) MUTATED | 142 | 202 | 104 |
DEL PEAK 6(3P22.2) WILD-TYPE | 31 | 7 | 24 |
P value = 0.00317 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 6(3P22.2) MUTATED | 29 | 15 | 43 | 30 |
DEL PEAK 6(3P22.2) WILD-TYPE | 10 | 6 | 1 | 8 |
P value = 0.0246 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 40 | 52 | 28 | 22 |
DEL PEAK 6(3P22.2) MUTATED | 30 | 40 | 25 | 22 |
DEL PEAK 6(3P22.2) WILD-TYPE | 10 | 12 | 3 | 0 |
P value = 0.00879 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 7(3P12.3) MUTATED | 19 | 18 | 3 |
DEL PEAK 7(3P12.3) WILD-TYPE | 12 | 7 | 11 |
P value = 0.0162 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 7(3P12.3) MUTATED | 7 | 9 | 1 | 8 | 7 | 7 | 1 |
DEL PEAK 7(3P12.3) WILD-TYPE | 4 | 3 | 3 | 3 | 6 | 2 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 7(3P12.3) MUTATED | 45 | 29 | 137 | 69 | 7 | 52 |
DEL PEAK 7(3P12.3) WILD-TYPE | 16 | 51 | 19 | 13 | 73 | 17 |
P value = 0.0158 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 7(3P12.3) MUTATED | 35 | 42 | 71 | 58 |
DEL PEAK 7(3P12.3) WILD-TYPE | 32 | 28 | 25 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 7(3P12.3) MUTATED | 28 | 122 | 55 | 110 | 23 |
DEL PEAK 7(3P12.3) WILD-TYPE | 53 | 48 | 26 | 43 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 7(3P12.3) MUTATED | 82 | 14 | 125 | 92 | 23 | 2 |
DEL PEAK 7(3P12.3) WILD-TYPE | 35 | 19 | 58 | 40 | 12 | 23 |
P value = 0.0207 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 7(3P12.3) MUTATED | 46 | 40 | 130 | 73 | 39 |
DEL PEAK 7(3P12.3) WILD-TYPE | 45 | 17 | 56 | 46 | 18 |
P value = 0.0373 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 7(3P12.3) MUTATED | 100 | 147 | 81 |
DEL PEAK 7(3P12.3) WILD-TYPE | 73 | 62 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 8(3P12.2) MUTATED | 41 | 27 | 128 | 59 | 1 | 49 |
DEL PEAK 8(3P12.2) WILD-TYPE | 20 | 53 | 28 | 23 | 79 | 20 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 8(3P12.2) MUTATED | 28 | 104 | 53 | 99 | 20 |
DEL PEAK 8(3P12.2) WILD-TYPE | 53 | 66 | 28 | 54 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 8(3P12.2) MUTATED | 75 | 13 | 109 | 84 | 21 | 2 |
DEL PEAK 8(3P12.2) WILD-TYPE | 42 | 20 | 74 | 48 | 14 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 9(3P11.1) MUTATED | 32 | 25 | 100 | 45 | 0 | 35 |
DEL PEAK 9(3P11.1) WILD-TYPE | 29 | 55 | 56 | 37 | 80 | 34 |
P value = 0.00018 (Fisher's exact test), Q value = 0.00057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 9(3P11.1) MUTATED | 21 | 78 | 46 | 78 | 13 |
DEL PEAK 9(3P11.1) WILD-TYPE | 60 | 92 | 35 | 75 | 27 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 9(3P11.1) MUTATED | 63 | 8 | 80 | 71 | 12 | 2 |
DEL PEAK 9(3P11.1) WILD-TYPE | 54 | 25 | 103 | 61 | 23 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 10(3Q11.2) MUTATED | 21 | 22 | 58 | 39 | 1 | 20 |
DEL PEAK 10(3Q11.2) WILD-TYPE | 40 | 58 | 98 | 43 | 79 | 49 |
P value = 0.00133 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 10(3Q11.2) MUTATED | 15 | 49 | 39 | 48 | 10 |
DEL PEAK 10(3Q11.2) WILD-TYPE | 66 | 121 | 42 | 105 | 30 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 10(3Q11.2) MUTATED | 49 | 6 | 50 | 50 | 5 | 1 |
DEL PEAK 10(3Q11.2) WILD-TYPE | 68 | 27 | 133 | 82 | 30 | 24 |
P value = 0.00606 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 10(3Q11.2) MUTATED | 19 | 11 | 59 | 41 | 26 |
DEL PEAK 10(3Q11.2) WILD-TYPE | 72 | 46 | 127 | 78 | 31 |
P value = 0.00255 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 11(4Q34.3) MUTATED | 5 | 12 | 27 | 9 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 62 | 58 | 69 | 72 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 11(4Q34.3) MUTATED | 8 | 11 | 30 | 11 | 13 | 1 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 80 | 75 | 60 | 71 | 79 | 32 |
P value = 0.00344 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 11(4Q34.3) MUTATED | 12 | 25 | 20 | 17 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 123 | 87 | 65 | 122 |
P value = 0.00926 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 11(4Q34.3) MUTATED | 6 | 18 | 12 | 34 | 8 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 75 | 152 | 69 | 119 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 11(4Q34.3) MUTATED | 15 | 1 | 18 | 38 | 6 | 0 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 102 | 32 | 165 | 94 | 29 | 25 |
P value = 0.0196 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 11(4Q34.3) MUTATED | 37 | 26 | 14 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 136 | 183 | 114 |
P value = 0.00361 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 40 | 52 | 28 | 22 |
DEL PEAK 11(4Q34.3) MUTATED | 3 | 15 | 4 | 0 |
DEL PEAK 11(4Q34.3) WILD-TYPE | 37 | 37 | 24 | 22 |
P value = 0.0367 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 12(6Q26) MUTATED | 7 | 12 | 8 |
DEL PEAK 12(6Q26) WILD-TYPE | 24 | 13 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 12(6Q26) MUTATED | 9 | 10 | 103 | 0 | 16 | 13 |
DEL PEAK 12(6Q26) WILD-TYPE | 52 | 70 | 53 | 82 | 64 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 12(6Q26) MUTATED | 23 | 27 | 41 | 29 | 9 | 6 |
DEL PEAK 12(6Q26) WILD-TYPE | 65 | 59 | 49 | 53 | 83 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 12(6Q26) MUTATED | 17 | 48 | 34 | 36 |
DEL PEAK 12(6Q26) WILD-TYPE | 118 | 64 | 51 | 103 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 12(6Q26) MUTATED | 22 | 42 | 14 | 63 | 8 |
DEL PEAK 12(6Q26) WILD-TYPE | 59 | 128 | 67 | 90 | 32 |
P value = 0.00037 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 12(6Q26) MUTATED | 26 | 6 | 40 | 58 | 10 | 9 |
DEL PEAK 12(6Q26) WILD-TYPE | 91 | 27 | 143 | 74 | 25 | 16 |
P value = 0.00404 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 12(6Q26) MUTATED | 26 | 19 | 39 | 49 | 14 |
DEL PEAK 12(6Q26) WILD-TYPE | 65 | 38 | 147 | 70 | 43 |
P value = 0.00362 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 12(6Q26) MUTATED | 56 | 44 | 47 |
DEL PEAK 12(6Q26) WILD-TYPE | 117 | 165 | 81 |
P value = 0.0488 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 12(6Q26) MUTATED | 7 | 2 | 12 | 15 |
DEL PEAK 12(6Q26) WILD-TYPE | 32 | 19 | 32 | 23 |
P value = 0.0381 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 13(6Q26) MUTATED | 7 | 12 | 8 |
DEL PEAK 13(6Q26) WILD-TYPE | 24 | 13 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 13(6Q26) MUTATED | 9 | 10 | 103 | 0 | 16 | 13 |
DEL PEAK 13(6Q26) WILD-TYPE | 52 | 70 | 53 | 82 | 64 | 56 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 13(6Q26) MUTATED | 23 | 26 | 42 | 29 | 9 | 6 |
DEL PEAK 13(6Q26) WILD-TYPE | 65 | 60 | 48 | 53 | 83 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 13(6Q26) MUTATED | 17 | 49 | 33 | 36 |
DEL PEAK 13(6Q26) WILD-TYPE | 118 | 63 | 52 | 103 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 13(6Q26) MUTATED | 21 | 42 | 14 | 64 | 8 |
DEL PEAK 13(6Q26) WILD-TYPE | 60 | 128 | 67 | 89 | 32 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 13(6Q26) MUTATED | 26 | 6 | 40 | 59 | 9 | 9 |
DEL PEAK 13(6Q26) WILD-TYPE | 91 | 27 | 143 | 73 | 26 | 16 |
P value = 0.0023 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 13(6Q26) MUTATED | 25 | 19 | 39 | 50 | 14 |
DEL PEAK 13(6Q26) WILD-TYPE | 66 | 38 | 147 | 69 | 43 |
P value = 0.00365 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 13(6Q26) MUTATED | 56 | 44 | 47 |
DEL PEAK 13(6Q26) WILD-TYPE | 117 | 165 | 81 |
P value = 0.0484 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 13(6Q26) MUTATED | 7 | 2 | 12 | 15 |
DEL PEAK 13(6Q26) WILD-TYPE | 32 | 19 | 32 | 23 |
P value = 0.0113 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 14(8P23.2) MUTATED | 15 | 24 | 62 | 15 | 19 | 19 |
DEL PEAK 14(8P23.2) WILD-TYPE | 46 | 56 | 94 | 67 | 61 | 50 |
P value = 0.0137 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 14(8P23.2) MUTATED | 24 | 15 | 38 | 27 | 26 | 8 |
DEL PEAK 14(8P23.2) WILD-TYPE | 64 | 71 | 52 | 55 | 66 | 25 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 14(8P23.2) MUTATED | 15 | 40 | 18 | 68 | 12 |
DEL PEAK 14(8P23.2) WILD-TYPE | 66 | 130 | 63 | 85 | 28 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 14(8P23.2) MUTATED | 31 | 3 | 48 | 60 | 6 | 5 |
DEL PEAK 14(8P23.2) WILD-TYPE | 86 | 30 | 135 | 72 | 29 | 20 |
P value = 0.00124 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 14(8P23.2) MUTATED | 27 | 16 | 42 | 53 | 13 |
DEL PEAK 14(8P23.2) WILD-TYPE | 64 | 41 | 144 | 66 | 44 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 14(8P23.2) MUTATED | 70 | 47 | 34 |
DEL PEAK 14(8P23.2) WILD-TYPE | 103 | 162 | 94 |
P value = 0.00638 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 15(9P23) MUTATED | 5 | 12 | 1 |
DEL PEAK 15(9P23) WILD-TYPE | 26 | 13 | 13 |
P value = 0.0361 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 15(9P23) MUTATED | 2 | 7 | 0 | 5 | 1 | 2 | 1 |
DEL PEAK 15(9P23) WILD-TYPE | 9 | 5 | 4 | 6 | 12 | 7 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 15(9P23) MUTATED | 7 | 21 | 86 | 17 | 21 | 0 |
DEL PEAK 15(9P23) WILD-TYPE | 54 | 59 | 70 | 65 | 59 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 15(9P23) MUTATED | 9 | 25 | 58 | 3 |
DEL PEAK 15(9P23) WILD-TYPE | 58 | 45 | 38 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 15(9P23) MUTATED | 16 | 14 | 56 | 24 | 25 | 6 |
DEL PEAK 15(9P23) WILD-TYPE | 72 | 72 | 34 | 58 | 67 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 15(9P23) MUTATED | 25 | 55 | 37 | 24 |
DEL PEAK 15(9P23) WILD-TYPE | 110 | 57 | 48 | 115 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 15(9P23) MUTATED | 15 | 15 | 22 | 92 | 7 |
DEL PEAK 15(9P23) WILD-TYPE | 66 | 155 | 59 | 61 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 15(9P23) MUTATED | 32 | 3 | 15 | 84 | 13 | 4 |
DEL PEAK 15(9P23) WILD-TYPE | 85 | 30 | 168 | 48 | 22 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 15(9P23) MUTATED | 20 | 24 | 26 | 64 | 13 |
DEL PEAK 15(9P23) WILD-TYPE | 71 | 33 | 160 | 55 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 15(9P23) MUTATED | 71 | 24 | 52 |
DEL PEAK 15(9P23) WILD-TYPE | 102 | 185 | 76 |
P value = 0.00189 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 15(9P23) MUTATED | 8 | 4 | 4 | 17 |
DEL PEAK 15(9P23) WILD-TYPE | 31 | 17 | 40 | 21 |
P value = 0.00256 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 16(9P21.3) MUTATED | 5 | 13 | 1 |
DEL PEAK 16(9P21.3) WILD-TYPE | 26 | 12 | 13 |
P value = 0.0164 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 16(9P21.3) MUTATED | 2 | 7 | 0 | 6 | 1 | 2 | 1 |
DEL PEAK 16(9P21.3) WILD-TYPE | 9 | 5 | 4 | 5 | 12 | 7 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 16(9P21.3) MUTATED | 7 | 23 | 89 | 17 | 22 | 1 |
DEL PEAK 16(9P21.3) WILD-TYPE | 54 | 57 | 67 | 65 | 58 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 16(9P21.3) MUTATED | 9 | 28 | 57 | 4 |
DEL PEAK 16(9P21.3) WILD-TYPE | 58 | 42 | 39 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 16(9P21.3) MUTATED | 17 | 15 | 59 | 23 | 27 | 6 |
DEL PEAK 16(9P21.3) WILD-TYPE | 71 | 71 | 31 | 59 | 65 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 16(9P21.3) MUTATED | 28 | 53 | 41 | 25 |
DEL PEAK 16(9P21.3) WILD-TYPE | 107 | 59 | 44 | 114 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 16(9P21.3) MUTATED | 16 | 17 | 24 | 94 | 7 |
DEL PEAK 16(9P21.3) WILD-TYPE | 65 | 153 | 57 | 59 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 16(9P21.3) MUTATED | 32 | 2 | 16 | 90 | 14 | 4 |
DEL PEAK 16(9P21.3) WILD-TYPE | 85 | 31 | 167 | 42 | 21 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 16(9P21.3) MUTATED | 23 | 24 | 27 | 65 | 14 |
DEL PEAK 16(9P21.3) WILD-TYPE | 68 | 33 | 159 | 54 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 16(9P21.3) MUTATED | 77 | 25 | 51 |
DEL PEAK 16(9P21.3) WILD-TYPE | 96 | 184 | 77 |
P value = 0.00097 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 21 | 44 | 38 |
DEL PEAK 16(9P21.3) MUTATED | 8 | 5 | 4 | 18 |
DEL PEAK 16(9P21.3) WILD-TYPE | 31 | 16 | 40 | 20 |
P value = 0.00603 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 40 | 52 | 28 | 22 |
DEL PEAK 16(9P21.3) MUTATED | 9 | 21 | 3 | 2 |
DEL PEAK 16(9P21.3) WILD-TYPE | 31 | 31 | 25 | 20 |
P value = 0.00658 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 17(10Q23.31) MUTATED | 7 | 11 | 41 | 7 | 14 | 16 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 54 | 69 | 115 | 75 | 66 | 53 |
P value = 0.0458 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 17(10Q23.31) MUTATED | 8 | 12 | 27 | 12 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 59 | 58 | 69 | 69 |
P value = 0.0144 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 17(10Q23.31) MUTATED | 15 | 26 | 22 | 22 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 120 | 86 | 63 | 117 |
P value = 0.00029 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 17(10Q23.31) MUTATED | 22 | 3 | 21 | 37 | 3 | 9 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 95 | 30 | 162 | 95 | 32 | 16 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 17(10Q23.31) MUTATED | 15 | 4 | 25 | 36 | 14 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 76 | 53 | 161 | 83 | 43 |
P value = 0.00137 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 17(10Q23.31) MUTATED | 36 | 24 | 34 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 137 | 185 | 94 |
P value = 0.0196 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 18(13Q13.3) MUTATED | 1 | 7 | 3 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 30 | 18 | 11 |
P value = 0.00201 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 18(13Q13.3) MUTATED | 8 | 17 | 20 | 4 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 59 | 53 | 76 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 18(13Q13.3) MUTATED | 11 | 3 | 33 | 10 | 12 | 3 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 77 | 83 | 57 | 72 | 80 | 30 |
P value = 0.00121 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 18(13Q13.3) MUTATED | 13 | 23 | 22 | 14 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 122 | 89 | 63 | 125 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 18(13Q13.3) MUTATED | 13 | 15 | 6 | 45 | 2 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 68 | 155 | 75 | 108 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 18(13Q13.3) MUTATED | 6 | 2 | 15 | 43 | 8 | 7 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 111 | 31 | 168 | 89 | 27 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 18(13Q13.3) MUTATED | 10 | 12 | 15 | 36 | 6 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 81 | 45 | 171 | 83 | 51 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 18(13Q13.3) MUTATED | 35 | 15 | 29 |
DEL PEAK 18(13Q13.3) WILD-TYPE | 138 | 194 | 99 |
P value = 2e-05 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 25 | 14 |
DEL PEAK 19(14Q31.1) MUTATED | 9 | 20 | 2 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 22 | 5 | 12 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 19(14Q31.1) MUTATED | 4 | 7 | 1 | 11 | 5 | 1 | 2 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 7 | 5 | 3 | 0 | 8 | 8 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 61 | 80 | 156 | 82 | 80 | 69 |
DEL PEAK 19(14Q31.1) MUTATED | 24 | 32 | 103 | 27 | 36 | 6 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 37 | 48 | 53 | 55 | 44 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 67 | 70 | 96 | 81 |
DEL PEAK 19(14Q31.1) MUTATED | 19 | 36 | 60 | 18 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 48 | 34 | 36 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 88 | 86 | 90 | 82 | 92 | 33 |
DEL PEAK 19(14Q31.1) MUTATED | 30 | 23 | 58 | 57 | 33 | 7 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 58 | 63 | 32 | 25 | 59 | 26 |
P value = 0.0311 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 112 | 85 | 139 |
DEL PEAK 19(14Q31.1) MUTATED | 49 | 56 | 46 | 57 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 86 | 56 | 39 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 81 | 170 | 81 | 153 | 40 |
DEL PEAK 19(14Q31.1) MUTATED | 20 | 57 | 26 | 112 | 10 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 61 | 113 | 55 | 41 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 117 | 33 | 183 | 132 | 35 | 25 |
DEL PEAK 19(14Q31.1) MUTATED | 45 | 7 | 57 | 81 | 33 | 2 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 72 | 26 | 126 | 51 | 2 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 91 | 57 | 186 | 119 | 57 |
DEL PEAK 19(14Q31.1) MUTATED | 30 | 35 | 64 | 79 | 14 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 61 | 22 | 122 | 40 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 4.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 173 | 209 | 128 |
DEL PEAK 19(14Q31.1) MUTATED | 75 | 69 | 78 |
DEL PEAK 19(14Q31.1) WILD-TYPE | 98 | 140 | 50 |
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Copy number data file = all_lesions.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/22531283/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/22555002/KIRC-TP.transferedmergedcluster.txt
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Number of patients = 528
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Number of significantly focal cnvs = 29
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.