This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 25 genes and 12 molecular subtypes across 436 patients, 32 significant findings detected with P value < 0.05 and Q value < 0.25.
-
SETD2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
PBRM1 mutation correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
KDM5C mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
VHL mutation correlated to 'MRNA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
MTOR mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
-
PTEN mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
NEFH mutation correlated to 'MRNASEQ_CNMF'.
-
NF2 mutation correlated to 'RPPA_CHIERARCHICAL'.
-
GPR50 mutation correlated to 'RPPA_CNMF'.
-
TFDP2 mutation correlated to 'RPPA_CHIERARCHICAL'.
-
EMG1 mutation correlated to 'MRNA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
PBRM1 | 131 (30%) | 305 |
0.04 (0.316) |
0.00909 (0.13) |
0.0244 (0.237) |
1e-05 (0.0015) |
0.00748 (0.119) |
0.275 (0.842) |
3e-05 (0.003) |
9e-05 (0.0054) |
0.00061 (0.0261) |
0.00097 (0.0327) |
0.00036 (0.018) |
0.00112 (0.0336) |
VHL | 192 (44%) | 244 |
0.0264 (0.248) |
0.0656 (0.428) |
0.0724 (0.453) |
0.196 (0.762) |
0.0276 (0.251) |
0.851 (1.00) |
7e-05 (0.00525) |
0.00098 (0.0327) |
0.27 (0.842) |
0.00753 (0.119) |
0.581 (1.00) |
0.651 (1.00) |
PTEN | 15 (3%) | 421 |
0.862 (1.00) |
0.134 (0.642) |
0.271 (0.842) |
0.0162 (0.173) |
0.00901 (0.13) |
0.00711 (0.119) |
1e-05 (0.0015) |
0.258 (0.841) |
||||
SETD2 | 43 (10%) | 393 |
0.603 (1.00) |
0.141 (0.651) |
0.852 (1.00) |
0.00172 (0.043) |
0.495 (1.00) |
0.0433 (0.317) |
0.148 (0.663) |
0.0141 (0.161) |
0.0862 (0.528) |
0.484 (1.00) |
0.293 (0.872) |
0.0245 (0.237) |
KDM5C | 25 (6%) | 411 |
0.0426 (0.317) |
0.233 (0.804) |
0.323 (0.889) |
0.196 (0.762) |
0.0145 (0.161) |
0.00276 (0.0637) |
0.00171 (0.043) |
0.205 (0.762) |
0.879 (1.00) |
0.662 (1.00) |
||
MTOR | 28 (6%) | 408 |
0.488 (1.00) |
0.299 (0.872) |
0.0133 (0.159) |
0.00658 (0.119) |
0.319 (0.889) |
0.849 (1.00) |
0.952 (1.00) |
0.177 (0.749) |
0.785 (1.00) |
0.817 (1.00) |
||
EMG1 | 4 (1%) | 432 |
0.0102 (0.139) |
0.0486 (0.339) |
0.131 (0.642) |
0.0424 (0.317) |
0.0111 (0.145) |
0.146 (0.663) |
0.0648 (0.428) |
|||||
NEFH | 6 (1%) | 430 |
0.605 (1.00) |
0.587 (1.00) |
0.896 (1.00) |
0.04 (0.316) |
0.00398 (0.0853) |
0.0295 (0.259) |
0.97 (1.00) |
0.449 (1.00) |
0.878 (1.00) |
0.0943 (0.55) |
||
NF2 | 6 (1%) | 430 |
0.322 (0.889) |
0.557 (1.00) |
0.223 (0.797) |
0.0124 (0.155) |
0.384 (0.985) |
0.206 (0.762) |
0.519 (1.00) |
0.248 (0.819) |
||||
GPR50 | 3 (1%) | 433 |
0.829 (1.00) |
0.0959 (0.55) |
0.00583 (0.117) |
0.879 (1.00) |
0.717 (1.00) |
0.22 (0.794) |
0.214 (0.781) |
0.353 (0.954) |
||||
TFDP2 | 4 (1%) | 432 |
0.57 (1.00) |
0.133 (0.642) |
0.0213 (0.22) |
0.808 (1.00) |
0.697 (1.00) |
0.3 (0.872) |
0.263 (0.841) |
|||||
TP53 | 9 (2%) | 427 |
0.451 (1.00) |
0.201 (0.762) |
0.122 (0.641) |
0.137 (0.642) |
0.263 (0.841) |
0.116 (0.632) |
0.398 (1.00) |
0.357 (0.956) |
0.504 (1.00) |
0.507 (1.00) |
||
ATM | 12 (3%) | 424 |
0.0538 (0.367) |
0.0971 (0.55) |
0.977 (1.00) |
0.951 (1.00) |
0.289 (0.867) |
0.328 (0.895) |
0.185 (0.752) |
0.134 (0.642) |
||||
NUDT11 | 4 (1%) | 432 |
0.137 (0.642) |
0.908 (1.00) |
0.395 (1.00) |
0.479 (1.00) |
0.553 (1.00) |
0.504 (1.00) |
1 (1.00) |
1 (1.00) |
||||
PIK3CA | 10 (2%) | 426 |
0.182 (0.752) |
1 (1.00) |
0.159 (0.691) |
0.665 (1.00) |
0.248 (0.819) |
0.789 (1.00) |
0.759 (1.00) |
1 (1.00) |
||||
FAM200A | 4 (1%) | 432 |
0.0302 (0.259) |
0.102 (0.566) |
0.317 (0.889) |
0.302 (0.872) |
0.0906 (0.544) |
|||||||
DPCR1 | 6 (1%) | 430 |
0.493 (1.00) |
0.437 (1.00) |
0.401 (1.00) |
0.775 (1.00) |
0.229 (0.802) |
0.0461 (0.329) |
0.245 (0.819) |
0.882 (1.00) |
||||
EGFR | 6 (1%) | 430 |
0.984 (1.00) |
0.426 (1.00) |
0.97 (1.00) |
0.273 (0.842) |
0.0716 (0.453) |
1 (1.00) |
1 (1.00) |
0.852 (1.00) |
||||
SH3KBP1 | 3 (1%) | 433 |
0.871 (1.00) |
0.875 (1.00) |
0.788 (1.00) |
0.901 (1.00) |
0.874 (1.00) |
1 (1.00) |
0.478 (1.00) |
|||||
ARID1A | 10 (2%) | 426 |
0.82 (1.00) |
0.546 (1.00) |
0.7 (1.00) |
0.83 (1.00) |
0.63 (1.00) |
0.987 (1.00) |
0.539 (1.00) |
0.195 (0.762) |
0.426 (1.00) |
0.126 (0.642) |
||
ARAP3 | 3 (1%) | 433 |
0.309 (0.882) |
0.875 (1.00) |
1 (1.00) |
0.535 (1.00) |
1 (1.00) |
1 (1.00) |
0.789 (1.00) |
|||||
SLC16A9 | 4 (1%) | 432 |
0.376 (0.98) |
0.629 (1.00) |
0.569 (1.00) |
0.2 (0.762) |
0.153 (0.674) |
0.0356 (0.297) |
0.701 (1.00) |
1 (1.00) |
||||
PCK1 | 4 (1%) | 432 |
0.896 (1.00) |
0.281 (0.851) |
1 (1.00) |
0.376 (0.98) |
0.74 (1.00) |
0.492 (1.00) |
0.681 (1.00) |
|||||
CUL9 | 7 (2%) | 429 |
0.958 (1.00) |
0.118 (0.634) |
0.853 (1.00) |
0.447 (1.00) |
0.23 (0.802) |
0.894 (1.00) |
0.555 (1.00) |
0.384 (0.985) |
0.879 (1.00) |
0.409 (1.00) |
||
ZDHHC1 | 4 (1%) | 432 |
0.243 (0.819) |
0.42 (1.00) |
0.177 (0.749) |
0.763 (1.00) |
0.185 (0.752) |
0.555 (1.00) |
0.37 (0.98) |
P value = 0.603 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 17 | 16 | 10 |
SETD2 MUTATED | 1 | 2 | 0 |
SETD2 WILD-TYPE | 16 | 14 | 10 |
P value = 0.141 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 3 | 5 | 3 | 10 | 10 | 4 | 8 |
SETD2 MUTATED | 0 | 2 | 0 | 0 | 1 | 0 | 0 |
SETD2 WILD-TYPE | 3 | 3 | 3 | 10 | 9 | 4 | 8 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
SETD2 MUTATED | 6 | 8 | 12 | 7 | 7 | 3 |
SETD2 WILD-TYPE | 43 | 60 | 118 | 56 | 62 | 51 |
P value = 0.00172 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
SETD2 MUTATED | 2 | 4 | 19 | 5 |
SETD2 WILD-TYPE | 55 | 55 | 64 | 59 |
P value = 0.495 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
SETD2 MUTATED | 5 | 8 | 10 | 10 | 6 | 1 |
SETD2 WILD-TYPE | 64 | 66 | 68 | 59 | 72 | 28 |
P value = 0.0433 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
SETD2 MUTATED | 7 | 16 | 9 | 8 |
SETD2 WILD-TYPE | 102 | 79 | 63 | 113 |
P value = 0.148 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
SETD2 MUTATED | 3 | 10 | 9 | 15 | 6 |
SETD2 WILD-TYPE | 57 | 127 | 63 | 120 | 24 |
P value = 0.0141 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
SETD2 MUTATED | 18 | 3 | 10 | 12 | 0 | 0 |
SETD2 WILD-TYPE | 81 | 22 | 140 | 103 | 30 | 15 |
P value = 0.0862 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
SETD2 MUTATED | 3 | 2 | 16 | 12 | 8 |
SETD2 WILD-TYPE | 68 | 47 | 143 | 92 | 36 |
P value = 0.484 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
SETD2 MUTATED | 11 | 17 | 13 |
SETD2 WILD-TYPE | 135 | 156 | 95 |
P value = 0.293 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
SETD2 MUTATED | 0 | 3 | 7 | 3 |
SETD2 WILD-TYPE | 17 | 17 | 32 | 28 |
P value = 0.0245 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
SETD2 MUTATED | 0 | 7 | 6 | 0 |
SETD2 WILD-TYPE | 18 | 37 | 20 | 19 |
P value = 0.04 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 17 | 16 | 10 |
PBRM1 MUTATED | 9 | 3 | 1 |
PBRM1 WILD-TYPE | 8 | 13 | 9 |
P value = 0.00909 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 3 | 5 | 3 | 10 | 10 | 4 | 8 |
PBRM1 MUTATED | 2 | 3 | 0 | 0 | 4 | 3 | 1 |
PBRM1 WILD-TYPE | 1 | 2 | 3 | 10 | 6 | 1 | 7 |
P value = 0.0244 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
PBRM1 MUTATED | 18 | 12 | 38 | 26 | 25 | 12 |
PBRM1 WILD-TYPE | 31 | 56 | 92 | 37 | 44 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
PBRM1 MUTATED | 8 | 12 | 35 | 36 |
PBRM1 WILD-TYPE | 49 | 47 | 48 | 28 |
P value = 0.00748 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
PBRM1 MUTATED | 19 | 36 | 20 | 23 | 19 | 5 |
PBRM1 WILD-TYPE | 50 | 38 | 58 | 46 | 59 | 24 |
P value = 0.275 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
PBRM1 MUTATED | 30 | 33 | 17 | 42 |
PBRM1 WILD-TYPE | 79 | 62 | 55 | 79 |
P value = 3e-05 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
PBRM1 MUTATED | 5 | 50 | 25 | 34 | 16 |
PBRM1 WILD-TYPE | 55 | 87 | 47 | 101 | 14 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
PBRM1 MUTATED | 39 | 5 | 57 | 26 | 2 | 1 |
PBRM1 WILD-TYPE | 60 | 20 | 93 | 89 | 28 | 14 |
P value = 0.00061 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
PBRM1 MUTATED | 18 | 6 | 65 | 24 | 14 |
PBRM1 WILD-TYPE | 53 | 43 | 94 | 80 | 30 |
P value = 0.00097 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
PBRM1 MUTATED | 29 | 67 | 31 |
PBRM1 WILD-TYPE | 117 | 106 | 77 |
P value = 0.00036 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
PBRM1 MUTATED | 4 | 1 | 21 | 6 |
PBRM1 WILD-TYPE | 13 | 19 | 18 | 25 |
P value = 0.00112 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
PBRM1 MUTATED | 4 | 8 | 7 | 13 |
PBRM1 WILD-TYPE | 14 | 36 | 19 | 6 |
P value = 0.0426 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
KDM5C MUTATED | 5 | 1 | 10 | 0 | 5 | 4 |
KDM5C WILD-TYPE | 44 | 67 | 120 | 63 | 64 | 50 |
P value = 0.233 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
KDM5C MUTATED | 1 | 5 | 8 | 3 |
KDM5C WILD-TYPE | 56 | 54 | 75 | 61 |
P value = 0.323 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
KDM5C MUTATED | 2 | 3 | 7 | 6 | 2 | 2 |
KDM5C WILD-TYPE | 67 | 71 | 71 | 63 | 76 | 27 |
P value = 0.196 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
KDM5C MUTATED | 2 | 7 | 5 | 8 |
KDM5C WILD-TYPE | 107 | 88 | 67 | 113 |
P value = 0.0145 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
KDM5C MUTATED | 0 | 5 | 5 | 9 | 5 |
KDM5C WILD-TYPE | 60 | 132 | 67 | 126 | 25 |
P value = 0.00276 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
KDM5C MUTATED | 13 | 1 | 2 | 8 | 0 | 0 |
KDM5C WILD-TYPE | 86 | 24 | 148 | 107 | 30 | 15 |
P value = 0.00171 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
KDM5C MUTATED | 1 | 1 | 5 | 11 | 7 |
KDM5C WILD-TYPE | 70 | 48 | 154 | 93 | 37 |
P value = 0.205 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
KDM5C MUTATED | 8 | 7 | 10 |
KDM5C WILD-TYPE | 138 | 166 | 98 |
P value = 0.879 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
KDM5C MUTATED | 0 | 0 | 2 | 1 |
KDM5C WILD-TYPE | 17 | 20 | 37 | 30 |
P value = 0.662 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
KDM5C MUTATED | 0 | 2 | 0 | 1 |
KDM5C WILD-TYPE | 18 | 42 | 26 | 18 |
P value = 0.0264 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 17 | 16 | 10 |
VHL MUTATED | 10 | 4 | 1 |
VHL WILD-TYPE | 7 | 12 | 9 |
P value = 0.0656 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 3 | 5 | 3 | 10 | 10 | 4 | 8 |
VHL MUTATED | 1 | 0 | 0 | 4 | 6 | 3 | 1 |
VHL WILD-TYPE | 2 | 5 | 3 | 6 | 4 | 1 | 7 |
P value = 0.0724 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
VHL MUTATED | 19 | 25 | 52 | 31 | 41 | 24 |
VHL WILD-TYPE | 30 | 43 | 78 | 32 | 28 | 30 |
P value = 0.196 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
VHL MUTATED | 27 | 20 | 43 | 30 |
VHL WILD-TYPE | 30 | 39 | 40 | 34 |
P value = 0.0276 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
VHL MUTATED | 27 | 43 | 31 | 23 | 41 | 13 |
VHL WILD-TYPE | 42 | 31 | 47 | 46 | 37 | 16 |
P value = 0.851 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
VHL MUTATED | 48 | 42 | 30 | 58 |
VHL WILD-TYPE | 61 | 53 | 42 | 63 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
VHL MUTATED | 12 | 75 | 37 | 54 | 14 |
VHL WILD-TYPE | 48 | 62 | 35 | 81 | 16 |
P value = 0.00098 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
VHL MUTATED | 45 | 6 | 81 | 48 | 11 | 1 |
VHL WILD-TYPE | 54 | 19 | 69 | 67 | 19 | 14 |
P value = 0.27 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
VHL MUTATED | 33 | 22 | 76 | 36 | 21 |
VHL WILD-TYPE | 38 | 27 | 83 | 68 | 23 |
P value = 0.00753 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
VHL MUTATED | 60 | 91 | 37 |
VHL WILD-TYPE | 86 | 82 | 71 |
P value = 0.581 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
VHL MUTATED | 6 | 8 | 17 | 17 |
VHL WILD-TYPE | 11 | 12 | 22 | 14 |
P value = 0.651 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
VHL MUTATED | 7 | 23 | 10 | 8 |
VHL WILD-TYPE | 11 | 21 | 16 | 11 |
P value = 0.488 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
MTOR MUTATED | 3 | 1 | 9 | 5 | 6 | 4 |
MTOR WILD-TYPE | 46 | 67 | 121 | 58 | 63 | 50 |
P value = 0.299 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
MTOR MUTATED | 3 | 3 | 11 | 6 |
MTOR WILD-TYPE | 54 | 56 | 72 | 58 |
P value = 0.0133 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
MTOR MUTATED | 2 | 6 | 10 | 7 | 1 | 0 |
MTOR WILD-TYPE | 67 | 68 | 68 | 62 | 77 | 29 |
P value = 0.00658 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
MTOR MUTATED | 3 | 14 | 3 | 6 |
MTOR WILD-TYPE | 106 | 81 | 69 | 115 |
P value = 0.319 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
MTOR MUTATED | 5 | 11 | 2 | 10 | 0 |
MTOR WILD-TYPE | 55 | 126 | 70 | 125 | 30 |
P value = 0.849 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
MTOR MUTATED | 5 | 2 | 9 | 10 | 1 | 1 |
MTOR WILD-TYPE | 94 | 23 | 141 | 105 | 29 | 14 |
P value = 0.952 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
MTOR MUTATED | 5 | 4 | 9 | 7 | 3 |
MTOR WILD-TYPE | 66 | 45 | 150 | 97 | 41 |
P value = 0.177 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
MTOR MUTATED | 11 | 7 | 10 |
MTOR WILD-TYPE | 135 | 166 | 98 |
P value = 0.785 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
MTOR MUTATED | 1 | 1 | 4 | 1 |
MTOR WILD-TYPE | 16 | 19 | 35 | 30 |
P value = 0.817 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
MTOR MUTATED | 1 | 2 | 2 | 2 |
MTOR WILD-TYPE | 17 | 42 | 24 | 17 |
P value = 0.451 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
TP53 MUTATED | 1 | 1 | 3 | 1 | 0 | 3 |
TP53 WILD-TYPE | 48 | 67 | 127 | 62 | 69 | 51 |
P value = 0.201 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
TP53 MUTATED | 3 | 3 | 2 | 0 |
TP53 WILD-TYPE | 54 | 56 | 81 | 64 |
P value = 0.122 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
TP53 MUTATED | 2 | 0 | 4 | 1 | 0 | 0 |
TP53 WILD-TYPE | 67 | 74 | 74 | 68 | 78 | 29 |
P value = 0.137 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
TP53 MUTATED | 0 | 1 | 3 | 3 |
TP53 WILD-TYPE | 109 | 94 | 69 | 118 |
P value = 0.263 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
TP53 MUTATED | 3 | 1 | 1 | 3 | 1 |
TP53 WILD-TYPE | 57 | 136 | 71 | 132 | 29 |
P value = 0.116 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
TP53 MUTATED | 1 | 0 | 2 | 3 | 1 | 2 |
TP53 WILD-TYPE | 98 | 25 | 148 | 112 | 29 | 13 |
P value = 0.398 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
TP53 MUTATED | 1 | 2 | 2 | 4 | 0 |
TP53 WILD-TYPE | 70 | 47 | 157 | 100 | 44 |
P value = 0.357 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
TP53 MUTATED | 3 | 2 | 4 |
TP53 WILD-TYPE | 143 | 171 | 104 |
P value = 0.504 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
TP53 MUTATED | 1 | 1 | 2 | 0 |
TP53 WILD-TYPE | 16 | 19 | 37 | 31 |
P value = 0.507 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
TP53 MUTATED | 1 | 1 | 2 | 0 |
TP53 WILD-TYPE | 17 | 43 | 24 | 19 |
P value = 0.862 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
PTEN MUTATED | 2 | 1 | 6 | 1 | 2 | 2 |
PTEN WILD-TYPE | 47 | 67 | 124 | 62 | 67 | 52 |
P value = 0.134 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
PTEN MUTATED | 1 | 4 | 4 | 0 |
PTEN WILD-TYPE | 56 | 55 | 79 | 64 |
P value = 0.271 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
PTEN MUTATED | 2 | 1 | 7 | 2 | 2 | 1 |
PTEN WILD-TYPE | 67 | 73 | 71 | 67 | 76 | 28 |
P value = 0.0162 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
PTEN MUTATED | 1 | 8 | 4 | 2 |
PTEN WILD-TYPE | 108 | 87 | 68 | 119 |
P value = 0.00901 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
PTEN MUTATED | 2 | 0 | 6 | 6 | 1 |
PTEN WILD-TYPE | 58 | 137 | 66 | 129 | 29 |
P value = 0.00711 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
PTEN MUTATED | 5 | 1 | 0 | 8 | 0 | 1 |
PTEN WILD-TYPE | 94 | 24 | 150 | 107 | 30 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
PTEN MUTATED | 0 | 1 | 2 | 3 | 9 |
PTEN WILD-TYPE | 71 | 48 | 157 | 101 | 35 |
P value = 0.258 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
PTEN MUTATED | 7 | 3 | 5 |
PTEN WILD-TYPE | 139 | 170 | 103 |
P value = 0.605 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
NEFH MUTATED | 1 | 0 | 1 | 1 | 2 | 1 |
NEFH WILD-TYPE | 48 | 68 | 129 | 62 | 67 | 53 |
P value = 0.587 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
NEFH MUTATED | 1 | 0 | 3 | 1 |
NEFH WILD-TYPE | 56 | 59 | 80 | 63 |
P value = 0.896 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
NEFH MUTATED | 1 | 2 | 2 | 0 | 1 | 0 |
NEFH WILD-TYPE | 68 | 72 | 76 | 69 | 77 | 29 |
P value = 0.04 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
NEFH MUTATED | 2 | 4 | 0 | 0 |
NEFH WILD-TYPE | 107 | 91 | 72 | 121 |
P value = 0.00398 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
NEFH MUTATED | 3 | 0 | 0 | 1 | 2 |
NEFH WILD-TYPE | 57 | 137 | 72 | 134 | 28 |
P value = 0.0295 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
NEFH MUTATED | 2 | 2 | 0 | 1 | 1 | 0 |
NEFH WILD-TYPE | 97 | 23 | 150 | 114 | 29 | 15 |
P value = 0.97 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
NEFH MUTATED | 1 | 1 | 3 | 1 | 0 |
NEFH WILD-TYPE | 70 | 48 | 156 | 103 | 44 |
P value = 0.449 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
NEFH MUTATED | 1 | 2 | 3 |
NEFH WILD-TYPE | 145 | 171 | 105 |
P value = 0.878 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
NEFH MUTATED | 0 | 0 | 2 | 1 |
NEFH WILD-TYPE | 17 | 20 | 37 | 30 |
P value = 0.0943 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
NEFH MUTATED | 0 | 0 | 1 | 2 |
NEFH WILD-TYPE | 18 | 44 | 25 | 17 |
P value = 0.322 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
NF2 MUTATED | 0 | 0 | 4 | 0 | 2 | 0 |
NF2 WILD-TYPE | 49 | 68 | 126 | 63 | 67 | 54 |
P value = 0.557 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
NF2 MUTATED | 0 | 1 | 2 | 0 |
NF2 WILD-TYPE | 57 | 58 | 81 | 64 |
P value = 0.223 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
NF2 MUTATED | 1 | 1 | 3 | 0 | 0 | 1 |
NF2 WILD-TYPE | 68 | 73 | 75 | 69 | 78 | 28 |
P value = 0.0124 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
NF2 MUTATED | 0 | 3 | 3 | 0 |
NF2 WILD-TYPE | 109 | 92 | 69 | 121 |
P value = 0.384 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
NF2 MUTATED | 2 | 1 | 0 | 3 | 0 |
NF2 WILD-TYPE | 58 | 136 | 72 | 132 | 30 |
P value = 0.206 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
NF2 MUTATED | 0 | 0 | 1 | 4 | 1 | 0 |
NF2 WILD-TYPE | 99 | 25 | 149 | 111 | 29 | 15 |
P value = 0.519 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
NF2 MUTATED | 1 | 1 | 1 | 3 | 0 |
NF2 WILD-TYPE | 70 | 48 | 158 | 101 | 44 |
P value = 0.248 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
NF2 MUTATED | 4 | 1 | 1 |
NF2 WILD-TYPE | 142 | 172 | 107 |
P value = 0.0538 (Fisher's exact test), Q value = 0.37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
ATM MUTATED | 4 | 0 | 2 | 1 | 4 | 1 |
ATM WILD-TYPE | 45 | 68 | 128 | 62 | 65 | 53 |
P value = 0.0971 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
ATM MUTATED | 0 | 1 | 2 | 5 |
ATM WILD-TYPE | 57 | 58 | 81 | 59 |
P value = 0.977 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
ATM MUTATED | 2 | 2 | 2 | 1 | 3 | 1 |
ATM WILD-TYPE | 67 | 72 | 76 | 68 | 75 | 28 |
P value = 0.951 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
ATM MUTATED | 4 | 2 | 2 | 3 |
ATM WILD-TYPE | 105 | 93 | 70 | 118 |
P value = 0.289 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
ATM MUTATED | 0 | 7 | 1 | 3 | 1 |
ATM WILD-TYPE | 60 | 130 | 71 | 132 | 29 |
P value = 0.328 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
ATM MUTATED | 2 | 0 | 8 | 1 | 1 | 0 |
ATM WILD-TYPE | 97 | 25 | 142 | 114 | 29 | 15 |
P value = 0.185 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
ATM MUTATED | 0 | 1 | 8 | 2 | 0 |
ATM WILD-TYPE | 71 | 48 | 151 | 102 | 44 |
P value = 0.134 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
ATM MUTATED | 1 | 5 | 5 |
ATM WILD-TYPE | 145 | 168 | 103 |
P value = 0.137 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
NUDT11 MUTATED | 0 | 0 | 1 | 0 | 3 | 0 |
NUDT11 WILD-TYPE | 49 | 68 | 129 | 63 | 66 | 54 |
P value = 0.908 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
NUDT11 MUTATED | 0 | 1 | 2 | 1 |
NUDT11 WILD-TYPE | 57 | 58 | 81 | 63 |
P value = 0.395 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
NUDT11 MUTATED | 0 | 1 | 1 | 1 | 0 | 1 |
NUDT11 WILD-TYPE | 69 | 73 | 77 | 68 | 78 | 28 |
P value = 0.479 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
NUDT11 MUTATED | 0 | 2 | 1 | 1 |
NUDT11 WILD-TYPE | 109 | 93 | 71 | 120 |
P value = 0.553 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
NUDT11 MUTATED | 1 | 2 | 1 | 0 | 0 |
NUDT11 WILD-TYPE | 59 | 135 | 71 | 135 | 30 |
P value = 0.504 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
NUDT11 MUTATED | 1 | 0 | 2 | 0 | 1 | 0 |
NUDT11 WILD-TYPE | 98 | 25 | 148 | 115 | 29 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
NUDT11 MUTATED | 1 | 0 | 2 | 1 | 0 |
NUDT11 WILD-TYPE | 70 | 49 | 157 | 103 | 44 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
NUDT11 MUTATED | 1 | 2 | 1 |
NUDT11 WILD-TYPE | 145 | 171 | 107 |
P value = 0.182 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
PIK3CA MUTATED | 4 | 1 | 3 | 1 | 1 | 0 |
PIK3CA WILD-TYPE | 45 | 67 | 127 | 62 | 68 | 54 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
PIK3CA MUTATED | 1 | 1 | 2 | 1 |
PIK3CA WILD-TYPE | 56 | 58 | 81 | 63 |
P value = 0.159 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
PIK3CA MUTATED | 3 | 0 | 3 | 2 | 0 | 1 |
PIK3CA WILD-TYPE | 66 | 74 | 75 | 67 | 78 | 28 |
P value = 0.665 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
PIK3CA MUTATED | 1 | 2 | 2 | 4 |
PIK3CA WILD-TYPE | 108 | 93 | 70 | 117 |
P value = 0.248 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
PIK3CA MUTATED | 0 | 5 | 0 | 5 | 0 |
PIK3CA WILD-TYPE | 60 | 132 | 72 | 130 | 30 |
P value = 0.789 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
PIK3CA MUTATED | 1 | 0 | 4 | 4 | 1 | 0 |
PIK3CA WILD-TYPE | 98 | 25 | 146 | 111 | 29 | 15 |
P value = 0.759 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
PIK3CA MUTATED | 2 | 1 | 3 | 4 | 0 |
PIK3CA WILD-TYPE | 69 | 48 | 156 | 100 | 44 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
PIK3CA MUTATED | 4 | 4 | 2 |
PIK3CA WILD-TYPE | 142 | 169 | 106 |
P value = 0.829 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
GPR50 MUTATED | 0 | 1 | 1 | 1 | 0 | 0 |
GPR50 WILD-TYPE | 49 | 67 | 129 | 62 | 69 | 54 |
P value = 0.0959 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
GPR50 MUTATED | 2 | 1 | 0 | 0 |
GPR50 WILD-TYPE | 55 | 58 | 83 | 64 |
P value = 0.00583 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
GPR50 MUTATED | 1 | 0 | 0 | 0 | 0 | 2 |
GPR50 WILD-TYPE | 68 | 74 | 78 | 69 | 78 | 27 |
P value = 0.879 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
GPR50 MUTATED | 1 | 0 | 1 | 1 |
GPR50 WILD-TYPE | 108 | 95 | 71 | 120 |
P value = 0.717 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
GPR50 MUTATED | 1 | 1 | 0 | 1 | 0 |
GPR50 WILD-TYPE | 59 | 136 | 72 | 134 | 30 |
P value = 0.22 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
GPR50 MUTATED | 0 | 0 | 1 | 1 | 0 | 1 |
GPR50 WILD-TYPE | 99 | 25 | 149 | 114 | 30 | 14 |
P value = 0.214 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
GPR50 MUTATED | 1 | 0 | 0 | 1 | 1 |
GPR50 WILD-TYPE | 70 | 49 | 159 | 103 | 43 |
P value = 0.353 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
GPR50 MUTATED | 2 | 0 | 1 |
GPR50 WILD-TYPE | 144 | 173 | 107 |
P value = 0.57 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
TFDP2 MUTATED | 1 | 0 | 2 | 0 | 0 | 1 |
TFDP2 WILD-TYPE | 48 | 68 | 128 | 63 | 69 | 53 |
P value = 0.133 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
TFDP2 MUTATED | 1 | 0 | 3 | 0 | 0 | 0 |
TFDP2 WILD-TYPE | 68 | 74 | 75 | 69 | 78 | 29 |
P value = 0.0213 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
TFDP2 MUTATED | 1 | 0 | 3 | 0 |
TFDP2 WILD-TYPE | 108 | 95 | 69 | 121 |
P value = 0.808 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
TFDP2 MUTATED | 0 | 1 | 0 | 2 | 0 |
TFDP2 WILD-TYPE | 60 | 136 | 72 | 133 | 30 |
P value = 0.697 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
TFDP2 MUTATED | 0 | 0 | 1 | 2 | 0 | 0 |
TFDP2 WILD-TYPE | 99 | 25 | 149 | 113 | 30 | 15 |
P value = 0.3 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
TFDP2 MUTATED | 1 | 0 | 0 | 2 | 0 |
TFDP2 WILD-TYPE | 70 | 49 | 159 | 102 | 44 |
P value = 0.263 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
TFDP2 MUTATED | 0 | 1 | 2 |
TFDP2 WILD-TYPE | 146 | 172 | 106 |
P value = 0.0302 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
FAM200A MUTATED | 2 | 0 | 0 | 0 | 2 | 0 |
FAM200A WILD-TYPE | 47 | 68 | 130 | 63 | 67 | 54 |
P value = 0.102 (Fisher's exact test), Q value = 0.57
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
FAM200A MUTATED | 0 | 3 | 0 | 0 | 1 |
FAM200A WILD-TYPE | 60 | 134 | 72 | 135 | 29 |
P value = 0.317 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
FAM200A MUTATED | 0 | 0 | 4 | 0 | 0 | 0 |
FAM200A WILD-TYPE | 99 | 25 | 146 | 115 | 30 | 15 |
P value = 0.302 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
FAM200A MUTATED | 0 | 0 | 4 | 0 | 0 |
FAM200A WILD-TYPE | 71 | 49 | 155 | 104 | 44 |
P value = 0.0906 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
FAM200A MUTATED | 0 | 4 | 0 |
FAM200A WILD-TYPE | 146 | 169 | 108 |
P value = 0.493 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
DPCR1 MUTATED | 0 | 1 | 1 | 2 | 2 | 0 |
DPCR1 WILD-TYPE | 49 | 67 | 129 | 61 | 67 | 54 |
P value = 0.437 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
DPCR1 MUTATED | 2 | 1 | 3 | 0 |
DPCR1 WILD-TYPE | 55 | 58 | 80 | 64 |
P value = 0.401 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
DPCR1 MUTATED | 0 | 0 | 2 | 2 | 1 | 1 |
DPCR1 WILD-TYPE | 69 | 74 | 76 | 67 | 77 | 28 |
P value = 0.775 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
DPCR1 MUTATED | 2 | 2 | 0 | 2 |
DPCR1 WILD-TYPE | 107 | 93 | 72 | 119 |
P value = 0.229 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
DPCR1 MUTATED | 2 | 0 | 1 | 3 | 0 |
DPCR1 WILD-TYPE | 58 | 137 | 71 | 132 | 30 |
P value = 0.0461 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
DPCR1 MUTATED | 1 | 1 | 0 | 2 | 1 | 1 |
DPCR1 WILD-TYPE | 98 | 24 | 150 | 113 | 29 | 14 |
P value = 0.245 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
DPCR1 MUTATED | 1 | 1 | 1 | 1 | 2 |
DPCR1 WILD-TYPE | 70 | 48 | 158 | 103 | 42 |
P value = 0.882 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
DPCR1 MUTATED | 2 | 2 | 2 |
DPCR1 WILD-TYPE | 144 | 171 | 106 |
P value = 0.984 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
EGFR MUTATED | 1 | 1 | 2 | 1 | 1 | 0 |
EGFR WILD-TYPE | 48 | 67 | 128 | 62 | 68 | 54 |
P value = 0.426 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
EGFR MUTATED | 0 | 0 | 1 | 2 |
EGFR WILD-TYPE | 57 | 59 | 82 | 62 |
P value = 0.97 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
EGFR MUTATED | 1 | 2 | 1 | 1 | 1 | 0 |
EGFR WILD-TYPE | 68 | 72 | 77 | 68 | 77 | 29 |
P value = 0.273 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
EGFR MUTATED | 1 | 0 | 1 | 4 |
EGFR WILD-TYPE | 108 | 95 | 71 | 117 |
P value = 0.0716 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
EGFR MUTATED | 0 | 1 | 2 | 1 | 2 |
EGFR WILD-TYPE | 60 | 136 | 70 | 134 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
EGFR MUTATED | 1 | 0 | 3 | 2 | 0 | 0 |
EGFR WILD-TYPE | 98 | 25 | 147 | 113 | 30 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
EGFR MUTATED | 1 | 0 | 3 | 1 | 0 |
EGFR WILD-TYPE | 70 | 49 | 156 | 103 | 44 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
EGFR MUTATED | 1 | 3 | 1 |
EGFR WILD-TYPE | 145 | 170 | 107 |
P value = 0.871 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
SH3KBP1 MUTATED | 0 | 0 | 1 | 1 | 1 | 0 |
SH3KBP1 WILD-TYPE | 49 | 68 | 129 | 62 | 68 | 54 |
P value = 0.875 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
SH3KBP1 MUTATED | 0 | 1 | 1 | 1 | 0 | 0 |
SH3KBP1 WILD-TYPE | 69 | 73 | 77 | 68 | 78 | 29 |
P value = 0.788 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
SH3KBP1 MUTATED | 0 | 1 | 1 | 1 |
SH3KBP1 WILD-TYPE | 109 | 94 | 71 | 120 |
P value = 0.901 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
SH3KBP1 MUTATED | 0 | 2 | 0 | 1 | 0 |
SH3KBP1 WILD-TYPE | 60 | 135 | 72 | 134 | 30 |
P value = 0.874 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
SH3KBP1 MUTATED | 0 | 0 | 2 | 1 | 0 | 0 |
SH3KBP1 WILD-TYPE | 99 | 25 | 148 | 114 | 30 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
SH3KBP1 MUTATED | 0 | 0 | 2 | 1 | 0 |
SH3KBP1 WILD-TYPE | 71 | 49 | 157 | 103 | 44 |
P value = 0.478 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
SH3KBP1 MUTATED | 0 | 2 | 1 |
SH3KBP1 WILD-TYPE | 146 | 171 | 107 |
P value = 0.0102 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 17 | 16 | 10 |
EMG1 MUTATED | 0 | 0 | 3 |
EMG1 WILD-TYPE | 17 | 16 | 7 |
P value = 0.0486 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 3 | 5 | 3 | 10 | 10 | 4 | 8 |
EMG1 MUTATED | 0 | 0 | 0 | 0 | 0 | 0 | 3 |
EMG1 WILD-TYPE | 3 | 5 | 3 | 10 | 10 | 4 | 5 |
P value = 0.131 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
EMG1 MUTATED | 0 | 1 | 0 | 0 | 1 | 2 |
EMG1 WILD-TYPE | 49 | 67 | 130 | 63 | 68 | 52 |
P value = 0.0424 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
EMG1 MUTATED | 3 | 1 | 0 | 0 | 0 |
EMG1 WILD-TYPE | 57 | 136 | 72 | 135 | 30 |
P value = 0.0111 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
EMG1 MUTATED | 0 | 0 | 2 | 0 | 0 | 2 |
EMG1 WILD-TYPE | 99 | 25 | 148 | 115 | 30 | 13 |
P value = 0.146 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
EMG1 MUTATED | 1 | 0 | 0 | 3 | 0 |
EMG1 WILD-TYPE | 70 | 49 | 159 | 101 | 44 |
P value = 0.0648 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
EMG1 MUTATED | 0 | 1 | 3 |
EMG1 WILD-TYPE | 146 | 172 | 105 |
P value = 0.82 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
ARID1A MUTATED | 1 | 1 | 2 | 3 | 2 | 1 |
ARID1A WILD-TYPE | 48 | 67 | 128 | 60 | 67 | 53 |
P value = 0.546 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
ARID1A MUTATED | 3 | 2 | 1 | 2 |
ARID1A WILD-TYPE | 54 | 57 | 82 | 62 |
P value = 0.7 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
ARID1A MUTATED | 2 | 1 | 4 | 2 | 1 | 0 |
ARID1A WILD-TYPE | 67 | 73 | 74 | 67 | 77 | 29 |
P value = 0.83 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
ARID1A MUTATED | 2 | 3 | 1 | 4 |
ARID1A WILD-TYPE | 107 | 92 | 71 | 117 |
P value = 0.63 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
ARID1A MUTATED | 0 | 5 | 1 | 4 | 0 |
ARID1A WILD-TYPE | 60 | 132 | 71 | 131 | 30 |
P value = 0.987 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
ARID1A MUTATED | 2 | 0 | 4 | 3 | 1 | 0 |
ARID1A WILD-TYPE | 97 | 25 | 146 | 112 | 29 | 15 |
P value = 0.539 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
ARID1A MUTATED | 0 | 1 | 6 | 2 | 1 |
ARID1A WILD-TYPE | 71 | 48 | 153 | 102 | 43 |
P value = 0.195 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
ARID1A MUTATED | 2 | 7 | 1 |
ARID1A WILD-TYPE | 144 | 166 | 107 |
P value = 0.426 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
ARID1A MUTATED | 1 | 0 | 2 | 0 |
ARID1A WILD-TYPE | 16 | 20 | 37 | 31 |
P value = 0.126 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
ARID1A MUTATED | 1 | 0 | 2 | 0 |
ARID1A WILD-TYPE | 17 | 44 | 24 | 19 |
P value = 0.309 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
ARAP3 MUTATED | 0 | 1 | 0 | 1 | 0 | 1 |
ARAP3 WILD-TYPE | 49 | 67 | 130 | 62 | 69 | 53 |
P value = 0.875 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
ARAP3 MUTATED | 0 | 1 | 0 | 1 | 1 | 0 |
ARAP3 WILD-TYPE | 69 | 73 | 78 | 68 | 77 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
ARAP3 MUTATED | 1 | 1 | 0 | 1 |
ARAP3 WILD-TYPE | 108 | 94 | 72 | 120 |
P value = 0.535 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
ARAP3 MUTATED | 1 | 1 | 1 | 0 | 0 |
ARAP3 WILD-TYPE | 59 | 136 | 71 | 135 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
ARAP3 MUTATED | 1 | 0 | 1 | 1 | 0 | 0 |
ARAP3 WILD-TYPE | 98 | 25 | 149 | 114 | 30 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
ARAP3 MUTATED | 0 | 0 | 2 | 1 | 0 |
ARAP3 WILD-TYPE | 71 | 49 | 157 | 103 | 44 |
P value = 0.789 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
ARAP3 MUTATED | 1 | 2 | 0 |
ARAP3 WILD-TYPE | 145 | 171 | 108 |
P value = 0.376 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
SLC16A9 MUTATED | 0 | 1 | 0 | 1 | 1 | 1 |
SLC16A9 WILD-TYPE | 49 | 67 | 130 | 62 | 68 | 53 |
P value = 0.629 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
SLC16A9 MUTATED | 1 | 1 | 0 | 1 |
SLC16A9 WILD-TYPE | 56 | 58 | 83 | 63 |
P value = 0.569 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
SLC16A9 MUTATED | 2 | 1 | 0 | 0 | 1 | 0 |
SLC16A9 WILD-TYPE | 67 | 73 | 78 | 69 | 77 | 29 |
P value = 0.2 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
SLC16A9 MUTATED | 3 | 0 | 0 | 1 |
SLC16A9 WILD-TYPE | 106 | 95 | 72 | 120 |
P value = 0.153 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
SLC16A9 MUTATED | 2 | 2 | 0 | 0 | 0 |
SLC16A9 WILD-TYPE | 58 | 135 | 72 | 135 | 30 |
P value = 0.0356 (Fisher's exact test), Q value = 0.3
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
SLC16A9 MUTATED | 0 | 2 | 2 | 0 | 0 | 0 |
SLC16A9 WILD-TYPE | 99 | 23 | 148 | 115 | 30 | 15 |
P value = 0.701 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
SLC16A9 MUTATED | 0 | 0 | 2 | 1 | 1 |
SLC16A9 WILD-TYPE | 71 | 49 | 157 | 103 | 43 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
SLC16A9 MUTATED | 1 | 2 | 1 |
SLC16A9 WILD-TYPE | 145 | 171 | 107 |
P value = 0.896 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
PCK1 MUTATED | 0 | 1 | 1 | 0 | 1 | 1 |
PCK1 WILD-TYPE | 49 | 67 | 129 | 63 | 68 | 53 |
P value = 0.281 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
PCK1 MUTATED | 2 | 1 | 0 | 0 | 0 | 0 |
PCK1 WILD-TYPE | 67 | 73 | 78 | 69 | 78 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
PCK1 MUTATED | 1 | 1 | 0 | 1 |
PCK1 WILD-TYPE | 108 | 94 | 72 | 120 |
P value = 0.376 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
PCK1 MUTATED | 0 | 3 | 1 | 0 | 0 |
PCK1 WILD-TYPE | 60 | 134 | 71 | 135 | 30 |
P value = 0.74 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
PCK1 MUTATED | 0 | 0 | 3 | 1 | 0 | 0 |
PCK1 WILD-TYPE | 99 | 25 | 147 | 114 | 30 | 15 |
P value = 0.492 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
PCK1 MUTATED | 1 | 0 | 2 | 0 | 1 |
PCK1 WILD-TYPE | 70 | 49 | 157 | 104 | 43 |
P value = 0.681 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
PCK1 MUTATED | 2 | 2 | 0 |
PCK1 WILD-TYPE | 144 | 171 | 108 |
P value = 0.958 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
CUL9 MUTATED | 0 | 2 | 2 | 1 | 1 | 1 |
CUL9 WILD-TYPE | 49 | 66 | 128 | 62 | 68 | 53 |
P value = 0.118 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 59 | 83 | 64 |
CUL9 MUTATED | 0 | 1 | 1 | 4 |
CUL9 WILD-TYPE | 57 | 58 | 82 | 60 |
P value = 0.853 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
CUL9 MUTATED | 2 | 1 | 1 | 0 | 2 | 0 |
CUL9 WILD-TYPE | 67 | 73 | 77 | 69 | 76 | 29 |
P value = 0.447 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
CUL9 MUTATED | 2 | 0 | 2 | 2 |
CUL9 WILD-TYPE | 107 | 95 | 70 | 119 |
P value = 0.23 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
CUL9 MUTATED | 1 | 2 | 0 | 2 | 2 |
CUL9 WILD-TYPE | 59 | 135 | 72 | 133 | 28 |
P value = 0.894 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
CUL9 MUTATED | 3 | 0 | 2 | 2 | 0 | 0 |
CUL9 WILD-TYPE | 96 | 25 | 148 | 113 | 30 | 15 |
P value = 0.555 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
CUL9 MUTATED | 0 | 0 | 4 | 3 | 0 |
CUL9 WILD-TYPE | 71 | 49 | 155 | 101 | 44 |
P value = 0.384 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
CUL9 MUTATED | 1 | 5 | 1 |
CUL9 WILD-TYPE | 145 | 168 | 107 |
P value = 0.879 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 17 | 20 | 39 | 31 |
CUL9 MUTATED | 0 | 0 | 2 | 1 |
CUL9 WILD-TYPE | 17 | 20 | 37 | 30 |
P value = 0.409 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 18 | 44 | 26 | 19 |
CUL9 MUTATED | 0 | 1 | 2 | 0 |
CUL9 WILD-TYPE | 18 | 43 | 24 | 19 |
P value = 0.243 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 49 | 68 | 130 | 63 | 69 | 54 |
ZDHHC1 MUTATED | 2 | 1 | 1 | 0 | 0 | 0 |
ZDHHC1 WILD-TYPE | 47 | 67 | 129 | 63 | 69 | 54 |
P value = 0.42 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 69 | 74 | 78 | 69 | 78 | 29 |
ZDHHC1 MUTATED | 2 | 1 | 0 | 1 | 0 | 0 |
ZDHHC1 WILD-TYPE | 67 | 73 | 78 | 68 | 78 | 29 |
P value = 0.177 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 109 | 95 | 72 | 121 |
ZDHHC1 MUTATED | 0 | 0 | 1 | 3 |
ZDHHC1 WILD-TYPE | 109 | 95 | 71 | 118 |
P value = 0.763 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 137 | 72 | 135 | 30 |
ZDHHC1 MUTATED | 1 | 2 | 0 | 1 | 0 |
ZDHHC1 WILD-TYPE | 59 | 135 | 72 | 134 | 30 |
P value = 0.185 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 99 | 25 | 150 | 115 | 30 | 15 |
ZDHHC1 MUTATED | 0 | 1 | 3 | 0 | 0 | 0 |
ZDHHC1 WILD-TYPE | 99 | 24 | 147 | 115 | 30 | 15 |
P value = 0.555 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 71 | 49 | 159 | 104 | 44 |
ZDHHC1 MUTATED | 0 | 1 | 1 | 2 | 0 |
ZDHHC1 WILD-TYPE | 71 | 48 | 158 | 102 | 44 |
P value = 0.37 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 173 | 108 |
ZDHHC1 MUTATED | 0 | 3 | 1 |
ZDHHC1 WILD-TYPE | 146 | 170 | 107 |
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Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
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Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/22815440/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/22555002/KIRC-TP.transferedmergedcluster.txt
-
Number of patients = 436
-
Number of significantly mutated genes = 25
-
Number of Molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.