GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag % Gene % Signal FDR (median) glob.p.val KEGG_CELL_CYCLE 118 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_CELL_CYCLE 0.59028 1.7934 0.005792 0.31652 0.568 0.331 0.142 0.286 0.084253 0.078 KEGG_NOD_LIKE_RECEPTOR_SIGNALING_PATHWAY 60 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_NOD_LIKE_RECEPTOR_SIGNALING_PATHWAY 0.67056 1.8216 0.01002 0.35391 0.507 0.383 0.141 0.33 0.09506 0.083 BIOCARTA_FMLP_PATHWAY 36 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_FMLP_PATHWAY 0.55085 1.752 0.01014 0.22284 0.658 0.278 0.218 0.218 0.075811 0.054 PID_IL2_PI3KPATHWAY 33 http://www.broadinstitute.org/gsea/msigdb/cards/PID_IL2_PI3KPATHWAY 0.66427 2.005 0 0.27821 0.126 0.242 0.0943 0.22 0 0.077 PID_CASPASE_PATHWAY 51 http://www.broadinstitute.org/gsea/msigdb/cards/PID_CASPASE_PATHWAY 0.4638 1.775 0.004237 0.2553 0.601 0.51 0.371 0.322 0.069665 0.07 REACTOME_CELL_CYCLE 376 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE 0.56497 1.8386 0.01704 0.38613 0.473 0.455 0.27 0.339 0 0.09 REACTOME_MHC_CLASS_II_ANTIGEN_PRESENTATION 89 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MHC_CLASS_II_ANTIGEN_PRESENTATION 0.51773 1.7741 0.004 0.24511 0.603 0.315 0.198 0.254 0.067433 0.063 REACTOME_RNA_POL_II_TRANSCRIPTION 93 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_TRANSCRIPTION 0.39846 1.9154 0.01156 0.37465 0.283 0.731 0.525 0.349 0 0.081 REACTOME_CELL_CYCLE_MITOTIC 297 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE_MITOTIC 0.59988 1.8173 0.009728 0.30799 0.517 0.33 0.152 0.285 0.082696 0.072 REACTOME_CELL_CYCLE_CHECKPOINTS 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_CYCLE_CHECKPOINTS 0.5613 1.7824 0.02677 0.30022 0.59 0.4 0.272 0.293 0.081399 0.074 REACTOME_G1_PHASE 35 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G1_PHASE 0.53401 1.7806 0.003922 0.27144 0.592 0.343 0.213 0.27 0.073559 0.069 REACTOME_MRNA_PROCESSING 145 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MRNA_PROCESSING 0.41255 1.8109 0.03529 0.29829 0.531 0.662 0.475 0.351 0.079213 0.072 REACTOME_M_G1_TRANSITION 72 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_M_G1_TRANSITION 0.57631 1.7547 0.03578 0.22527 0.651 0.431 0.266 0.317 0.076354 0.054 REACTOME_G1_S_TRANSITION 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_G1_S_TRANSITION 0.57729 1.7934 0.02099 0.29542 0.568 0.4 0.247 0.303 0.078636 0.07 REACTOME_SYNTHESIS_OF_DNA 84 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SYNTHESIS_OF_DNA 0.57687 1.8185 0.01509 0.33179 0.514 0.464 0.266 0.342 0.089191 0.082 REACTOME_DEADENYLATION_DEPENDENT_MRNA_DECAY 44 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DEADENYLATION_DEPENDENT_MRNA_DECAY 0.41609 1.7489 0.02481 0.221 0.664 0.682 0.499 0.342 0.075994 0.054 REACTOME_MITOTIC_G1_G1_S_PHASES 124 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_G1_G1_S_PHASES 0.57211 1.8467 0.005736 0.4087 0.449 0.419 0.247 0.318 0 0.094 REACTOME_REGULATION_OF_MITOTIC_CELL_CYCLE 77 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MITOTIC_CELL_CYCLE 0.55103 1.7705 0.02174 0.22147 0.61 0.195 0.114 0.173 0.06695 0.051 REACTOME_MITOTIC_M_M_G1_PHASES 161 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MITOTIC_M_M_G1_PHASES 0.64883 1.7821 0.01351 0.28359 0.59 0.385 0.16 0.327 0.076611 0.07 REACTOME_DNA_REPAIR 105 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPAIR 0.46042 1.734 0.03468 0.24248 0.702 0.476 0.353 0.31 0.086937 0.059 REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 59 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 0.39257 1.7623 0.01349 0.22758 0.631 0.593 0.471 0.315 0.076889 0.051 REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 81 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_MRNA_STABILITY_BY_PROTEINS_THAT_BIND_AU_RICH_ELEMENTS 0.42339 1.7762 0.04 0.26629 0.6 0.741 0.509 0.365 0.072553 0.072 REACTOME_DNA_REPLICATION 181 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DNA_REPLICATION 0.63694 1.771 0.0153 0.22973 0.608 0.387 0.16 0.328 0.067561 0.057 REACTOME_HIV_INFECTION 193 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HIV_INFECTION 0.39807 2.1068 0.002028 0.15068 0.052 0.611 0.477 0.323 0 0.047 REACTOME_HIV_LIFE_CYCLE 114 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HIV_LIFE_CYCLE 0.39005 1.9271 0.01176 0.43824 0.256 0.596 0.461 0.324 0 0.1 REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS 120 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_HOST_INTERACTIONS_OF_HIV_FACTORS 0.42463 1.8944 0.008421 0.36916 0.333 0.7 0.509 0.346 0 0.083 REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 101 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 0.37068 1.823 0.02825 0.38831 0.5 0.574 0.461 0.311 0.049457 0.094 REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION 230 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION 0.30617 1.7722 0.02316 0.23843 0.605 0.526 0.476 0.279 0.067211 0.061 REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION 193 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION 0.26694 1.7612 0.01237 0.2212 0.632 0.503 0.476 0.266 0.074483 0.05 REACTOME_S_PHASE 100 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_S_PHASE 0.57734 1.8599 0.01145 0.42236 0.417 0.46 0.266 0.339 0 0.098