This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 19 genes and 12 molecular subtypes across 178 patients, 21 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
CDKN2A mutation correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.
-
NFE2L2 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
KEAP1 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'RPPA_CNMF'.
-
NOTCH1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
-
SLC28A1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
-
POLR2B mutation correlated to 'MIRSEQ_CNMF'.
-
PI16 mutation correlated to 'METHLYATION_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
TP53 | 145 (81%) | 33 |
0.0636 (0.415) |
0.0222 (0.249) |
0.00023 (0.00874) |
0.00923 (0.14) |
0.122 (0.606) |
0.711 (0.988) |
0.00027 (0.00879) |
0.0038 (0.0788) |
0.00705 (0.115) |
0.365 (0.905) |
0.0293 (0.257) |
0.0501 (0.358) |
NFE2L2 | 27 (15%) | 151 |
0.00016 (0.00866) |
0.00019 (0.00866) |
0.0395 (0.322) |
0.129 (0.606) |
0.12 (0.606) |
0.346 (0.877) |
1e-05 (0.00114) |
1e-05 (0.00114) |
0.0259 (0.253) |
2e-05 (0.00152) |
0.852 (1.00) |
0.686 (0.988) |
KEAP1 | 22 (12%) | 156 |
0.00119 (0.0285) |
0.00084 (0.0239) |
0.515 (0.939) |
0.586 (0.982) |
0.0161 (0.203) |
0.361 (0.903) |
0.0913 (0.534) |
0.0277 (0.253) |
0.0615 (0.412) |
0.442 (0.939) |
0.308 (0.847) |
0.409 (0.932) |
CDKN2A | 26 (15%) | 152 |
0.00125 (0.0285) |
0.00586 (0.103) |
0.221 (0.75) |
0.646 (0.982) |
0.444 (0.939) |
0.345 (0.877) |
0.406 (0.932) |
0.0893 (0.534) |
0.504 (0.939) |
0.817 (1.00) |
0.211 (0.746) |
0.199 (0.746) |
SLC28A1 | 9 (5%) | 169 |
0.0245 (0.253) |
0.0502 (0.358) |
0.0311 (0.262) |
0.298 (0.847) |
0.413 (0.932) |
0.458 (0.939) |
0.0454 (0.345) |
0.0271 (0.253) |
0.0118 (0.159) |
0.017 (0.204) |
0.287 (0.847) |
0.712 (0.988) |
NOTCH1 | 14 (8%) | 164 |
0.627 (0.982) |
0.604 (0.982) |
0.985 (1.00) |
0.0603 (0.412) |
0.508 (0.939) |
0.587 (0.982) |
0.771 (0.988) |
0.391 (0.92) |
0.397 (0.925) |
0.319 (0.849) |
0.00489 (0.0929) |
0.102 (0.551) |
POLR2B | 6 (3%) | 172 |
1 (1.00) |
0.791 (1.00) |
0.292 (0.847) |
0.165 (0.682) |
1 (1.00) |
0.202 (0.746) |
0.476 (0.939) |
0.312 (0.847) |
0.0112 (0.159) |
0.451 (0.939) |
0.167 (0.682) |
0.215 (0.746) |
PI16 | 7 (4%) | 171 |
0.235 (0.788) |
0.718 (0.988) |
0.424 (0.939) |
0.023 (0.249) |
0.0446 (0.345) |
0.287 (0.847) |
0.733 (0.988) |
0.883 (1.00) |
0.726 (0.988) |
0.489 (0.939) |
||
MLL2 | 36 (20%) | 142 |
0.276 (0.847) |
0.464 (0.939) |
0.762 (0.988) |
0.267 (0.847) |
0.982 (1.00) |
0.936 (1.00) |
0.377 (0.905) |
0.74 (0.988) |
0.454 (0.939) |
0.922 (1.00) |
0.718 (0.988) |
0.623 (0.982) |
PTEN | 14 (8%) | 164 |
0.388 (0.92) |
0.324 (0.85) |
0.445 (0.939) |
0.737 (0.988) |
1 (1.00) |
0.771 (0.988) |
0.626 (0.982) |
0.513 (0.939) |
0.691 (0.988) |
0.511 (0.939) |
0.303 (0.847) |
0.539 (0.967) |
PIK3CA | 27 (15%) | 151 |
0.76 (0.988) |
0.751 (0.988) |
0.32 (0.849) |
0.614 (0.982) |
0.851 (1.00) |
0.758 (0.988) |
0.562 (0.978) |
0.588 (0.982) |
0.716 (0.988) |
0.373 (0.905) |
1 (1.00) |
0.49 (0.939) |
RB1 | 12 (7%) | 166 |
0.283 (0.847) |
0.643 (0.982) |
0.159 (0.675) |
0.794 (1.00) |
0.097 (0.54) |
0.568 (0.981) |
0.589 (0.982) |
0.24 (0.792) |
0.18 (0.706) |
0.754 (0.988) |
||
CYP11B1 | 15 (8%) | 163 |
0.307 (0.847) |
0.678 (0.988) |
0.763 (0.988) |
0.602 (0.982) |
0.671 (0.988) |
0.444 (0.939) |
0.685 (0.988) |
0.37 (0.905) |
0.543 (0.967) |
0.977 (1.00) |
||
ASB5 | 9 (5%) | 169 |
0.592 (0.982) |
0.553 (0.978) |
0.195 (0.746) |
0.453 (0.939) |
1 (1.00) |
0.478 (0.939) |
0.494 (0.939) |
0.216 (0.746) |
0.335 (0.868) |
|||
IRF6 | 6 (3%) | 172 |
0.289 (0.847) |
0.443 (0.939) |
0.632 (0.982) |
0.558 (0.978) |
0.797 (1.00) |
0.143 (0.628) |
0.763 (0.988) |
0.749 (0.988) |
0.125 (0.606) |
0.819 (1.00) |
||
EP300 | 8 (4%) | 170 |
0.134 (0.609) |
0.117 (0.606) |
0.16 (0.675) |
1 (1.00) |
0.713 (0.988) |
0.0858 (0.529) |
0.0822 (0.521) |
0.213 (0.746) |
0.823 (1.00) |
|||
CPS1 | 24 (13%) | 154 |
0.469 (0.939) |
0.208 (0.746) |
0.501 (0.939) |
1 (1.00) |
0.619 (0.982) |
0.857 (1.00) |
0.959 (1.00) |
0.848 (1.00) |
0.13 (0.606) |
0.128 (0.606) |
0.595 (0.982) |
1 (1.00) |
ARID1A | 13 (7%) | 165 |
0.309 (0.847) |
0.644 (0.982) |
0.292 (0.847) |
0.638 (0.982) |
0.142 (0.628) |
0.674 (0.988) |
0.177 (0.706) |
0.809 (1.00) |
0.53 (0.959) |
0.503 (0.939) |
||
HRAS | 5 (3%) | 173 |
0.829 (1.00) |
0.68 (0.988) |
0.289 (0.847) |
0.931 (1.00) |
1 (1.00) |
0.0972 (0.54) |
0.75 (0.988) |
P value = 0.0636 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
TP53 MUTATED | 29 | 42 | 12 | 16 |
TP53 WILD-TYPE | 7 | 4 | 7 | 4 |
P value = 0.0222 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
TP53 MUTATED | 31 | 48 | 20 |
TP53 WILD-TYPE | 10 | 4 | 8 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
TP53 MUTATED | 13 | 19 | 9 | 22 | 65 | 17 |
TP53 WILD-TYPE | 5 | 15 | 1 | 6 | 5 | 1 |
P value = 0.00923 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
TP53 MUTATED | 13 | 21 | 10 | 17 |
TP53 WILD-TYPE | 2 | 1 | 0 | 10 |
P value = 0.122 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
TP53 MUTATED | 24 | 34 | 27 | 4 |
TP53 WILD-TYPE | 8 | 11 | 2 | 2 |
P value = 0.711 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
TP53 MUTATED | 17 | 16 | 19 | 23 | 10 | 4 |
TP53 WILD-TYPE | 5 | 4 | 5 | 3 | 4 | 2 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
TP53 MUTATED | 29 | 56 | 45 | 15 |
TP53 WILD-TYPE | 8 | 5 | 7 | 13 |
P value = 0.0038 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
TP53 MUTATED | 47 | 67 | 31 |
TP53 WILD-TYPE | 21 | 7 | 5 |
P value = 0.00705 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
TP53 MUTATED | 81 | 8 | 22 | 26 |
TP53 WILD-TYPE | 11 | 0 | 12 | 2 |
P value = 0.365 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
TP53 MUTATED | 32 | 41 | 47 | 17 |
TP53 WILD-TYPE | 3 | 10 | 7 | 5 |
P value = 0.0293 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
TP53 MUTATED | 6 | 18 | 11 | 5 |
TP53 WILD-TYPE | 1 | 0 | 6 | 1 |
P value = 0.0501 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
TP53 MUTATED | 3 | 26 | 11 |
TP53 WILD-TYPE | 0 | 2 | 6 |
P value = 0.00125 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
CDKN2A MUTATED | 0 | 13 | 2 | 3 |
CDKN2A WILD-TYPE | 36 | 33 | 17 | 17 |
P value = 0.00586 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
CDKN2A MUTATED | 1 | 13 | 4 |
CDKN2A WILD-TYPE | 40 | 39 | 24 |
P value = 0.221 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
CDKN2A MUTATED | 2 | 2 | 1 | 2 | 15 | 4 |
CDKN2A WILD-TYPE | 16 | 32 | 9 | 26 | 55 | 14 |
P value = 0.646 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
CDKN2A MUTATED | 3 | 3 | 1 | 2 |
CDKN2A WILD-TYPE | 12 | 19 | 9 | 25 |
P value = 0.444 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
CDKN2A MUTATED | 2 | 8 | 3 | 0 |
CDKN2A WILD-TYPE | 30 | 37 | 26 | 6 |
P value = 0.345 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
CDKN2A MUTATED | 2 | 2 | 4 | 1 | 2 | 2 |
CDKN2A WILD-TYPE | 20 | 18 | 20 | 25 | 12 | 4 |
P value = 0.406 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
CDKN2A MUTATED | 4 | 12 | 5 | 5 |
CDKN2A WILD-TYPE | 33 | 49 | 47 | 23 |
P value = 0.0893 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
CDKN2A MUTATED | 6 | 16 | 4 |
CDKN2A WILD-TYPE | 62 | 58 | 32 |
P value = 0.504 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
CDKN2A MUTATED | 11 | 2 | 6 | 5 |
CDKN2A WILD-TYPE | 81 | 6 | 28 | 23 |
P value = 0.817 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
CDKN2A MUTATED | 5 | 6 | 10 | 3 |
CDKN2A WILD-TYPE | 30 | 45 | 44 | 19 |
P value = 0.211 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
CDKN2A MUTATED | 1 | 3 | 0 | 1 |
CDKN2A WILD-TYPE | 6 | 15 | 17 | 5 |
P value = 0.199 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
CDKN2A MUTATED | 0 | 5 | 0 |
CDKN2A WILD-TYPE | 3 | 23 | 17 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
NFE2L2 MUTATED | 0 | 14 | 1 | 1 |
NFE2L2 WILD-TYPE | 36 | 32 | 18 | 19 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
NFE2L2 MUTATED | 0 | 14 | 2 |
NFE2L2 WILD-TYPE | 41 | 38 | 26 |
P value = 0.0395 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
NFE2L2 MUTATED | 1 | 3 | 1 | 2 | 19 | 1 |
NFE2L2 WILD-TYPE | 17 | 31 | 9 | 26 | 51 | 17 |
P value = 0.129 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
NFE2L2 MUTATED | 0 | 6 | 2 | 4 |
NFE2L2 WILD-TYPE | 15 | 16 | 8 | 23 |
P value = 0.12 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
NFE2L2 MUTATED | 8 | 4 | 7 | 0 |
NFE2L2 WILD-TYPE | 24 | 41 | 22 | 6 |
P value = 0.346 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
NFE2L2 MUTATED | 4 | 3 | 1 | 7 | 3 | 1 |
NFE2L2 WILD-TYPE | 18 | 17 | 23 | 19 | 11 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
NFE2L2 MUTATED | 2 | 21 | 1 | 3 |
NFE2L2 WILD-TYPE | 35 | 40 | 51 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
NFE2L2 MUTATED | 2 | 24 | 1 |
NFE2L2 WILD-TYPE | 66 | 50 | 35 |
P value = 0.0259 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
NFE2L2 MUTATED | 12 | 0 | 4 | 10 |
NFE2L2 WILD-TYPE | 80 | 8 | 30 | 18 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
NFE2L2 MUTATED | 15 | 6 | 2 | 3 |
NFE2L2 WILD-TYPE | 20 | 45 | 52 | 19 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
NFE2L2 MUTATED | 1 | 4 | 3 | 0 |
NFE2L2 WILD-TYPE | 6 | 14 | 14 | 6 |
P value = 0.686 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
NFE2L2 MUTATED | 0 | 4 | 4 |
NFE2L2 WILD-TYPE | 3 | 24 | 13 |
P value = 0.276 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
MLL2 MUTATED | 4 | 10 | 6 | 5 |
MLL2 WILD-TYPE | 32 | 36 | 13 | 15 |
P value = 0.464 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
MLL2 MUTATED | 6 | 13 | 6 |
MLL2 WILD-TYPE | 35 | 39 | 22 |
P value = 0.762 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
MLL2 MUTATED | 2 | 7 | 2 | 4 | 18 | 3 |
MLL2 WILD-TYPE | 16 | 27 | 8 | 24 | 52 | 15 |
P value = 0.267 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
MLL2 MUTATED | 1 | 7 | 1 | 5 |
MLL2 WILD-TYPE | 14 | 15 | 9 | 22 |
P value = 0.982 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
MLL2 MUTATED | 7 | 9 | 7 | 1 |
MLL2 WILD-TYPE | 25 | 36 | 22 | 5 |
P value = 0.936 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
MLL2 MUTATED | 5 | 4 | 6 | 5 | 2 | 2 |
MLL2 WILD-TYPE | 17 | 16 | 18 | 21 | 12 | 4 |
P value = 0.377 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
MLL2 MUTATED | 4 | 15 | 12 | 5 |
MLL2 WILD-TYPE | 33 | 46 | 40 | 23 |
P value = 0.74 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
MLL2 MUTATED | 12 | 17 | 7 |
MLL2 WILD-TYPE | 56 | 57 | 29 |
P value = 0.454 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
MLL2 MUTATED | 15 | 3 | 7 | 5 |
MLL2 WILD-TYPE | 77 | 5 | 27 | 23 |
P value = 0.922 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
MLL2 MUTATED | 5 | 10 | 11 | 4 |
MLL2 WILD-TYPE | 30 | 41 | 43 | 18 |
P value = 0.718 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
MLL2 MUTATED | 2 | 4 | 4 | 0 |
MLL2 WILD-TYPE | 5 | 14 | 13 | 6 |
P value = 0.623 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
MLL2 MUTATED | 1 | 5 | 4 |
MLL2 WILD-TYPE | 2 | 23 | 13 |
P value = 0.00119 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
KEAP1 MUTATED | 0 | 12 | 1 | 4 |
KEAP1 WILD-TYPE | 36 | 34 | 18 | 16 |
P value = 0.00084 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
KEAP1 MUTATED | 0 | 13 | 4 |
KEAP1 WILD-TYPE | 41 | 39 | 24 |
P value = 0.515 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
KEAP1 MUTATED | 3 | 3 | 1 | 1 | 12 | 2 |
KEAP1 WILD-TYPE | 15 | 31 | 9 | 27 | 58 | 16 |
P value = 0.586 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
KEAP1 MUTATED | 2 | 3 | 1 | 1 |
KEAP1 WILD-TYPE | 13 | 19 | 9 | 26 |
P value = 0.0161 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
KEAP1 MUTATED | 1 | 2 | 7 | 1 |
KEAP1 WILD-TYPE | 31 | 43 | 22 | 5 |
P value = 0.361 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
KEAP1 MUTATED | 2 | 4 | 1 | 4 | 0 | 0 |
KEAP1 WILD-TYPE | 20 | 16 | 23 | 22 | 14 | 6 |
P value = 0.0913 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
KEAP1 MUTATED | 1 | 12 | 6 | 3 |
KEAP1 WILD-TYPE | 36 | 49 | 46 | 25 |
P value = 0.0277 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
KEAP1 MUTATED | 3 | 13 | 6 |
KEAP1 WILD-TYPE | 65 | 61 | 30 |
P value = 0.0615 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
KEAP1 MUTATED | 13 | 1 | 0 | 4 |
KEAP1 WILD-TYPE | 79 | 7 | 34 | 24 |
P value = 0.442 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
KEAP1 MUTATED | 5 | 3 | 8 | 2 |
KEAP1 WILD-TYPE | 30 | 48 | 46 | 20 |
P value = 0.308 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
KEAP1 MUTATED | 0 | 3 | 0 | 0 |
KEAP1 WILD-TYPE | 7 | 15 | 17 | 6 |
P value = 0.409 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
KEAP1 MUTATED | 0 | 3 | 0 |
KEAP1 WILD-TYPE | 3 | 25 | 17 |
P value = 0.388 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
PTEN MUTATED | 4 | 2 | 0 | 2 |
PTEN WILD-TYPE | 32 | 44 | 19 | 18 |
P value = 0.324 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
PTEN MUTATED | 5 | 2 | 1 |
PTEN WILD-TYPE | 36 | 50 | 27 |
P value = 0.445 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
PTEN MUTATED | 1 | 3 | 1 | 3 | 3 | 3 |
PTEN WILD-TYPE | 17 | 31 | 9 | 25 | 67 | 15 |
P value = 0.737 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
PTEN MUTATED | 1 | 3 | 0 | 4 |
PTEN WILD-TYPE | 14 | 19 | 10 | 23 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
PTEN MUTATED | 2 | 4 | 2 | 0 |
PTEN WILD-TYPE | 30 | 41 | 27 | 6 |
P value = 0.771 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
PTEN MUTATED | 1 | 1 | 1 | 3 | 2 | 0 |
PTEN WILD-TYPE | 21 | 19 | 23 | 23 | 12 | 6 |
P value = 0.626 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
PTEN MUTATED | 4 | 3 | 4 | 3 |
PTEN WILD-TYPE | 33 | 58 | 48 | 25 |
P value = 0.513 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
PTEN MUTATED | 6 | 4 | 4 |
PTEN WILD-TYPE | 62 | 70 | 32 |
P value = 0.691 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
PTEN MUTATED | 7 | 1 | 3 | 1 |
PTEN WILD-TYPE | 85 | 7 | 31 | 27 |
P value = 0.511 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
PTEN MUTATED | 1 | 3 | 6 | 2 |
PTEN WILD-TYPE | 34 | 48 | 48 | 20 |
P value = 0.303 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
PTEN MUTATED | 0 | 1 | 4 | 0 |
PTEN WILD-TYPE | 7 | 17 | 13 | 6 |
P value = 0.539 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
PTEN MUTATED | 0 | 2 | 3 |
PTEN WILD-TYPE | 3 | 26 | 14 |
P value = 0.76 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
PIK3CA MUTATED | 5 | 5 | 3 | 4 |
PIK3CA WILD-TYPE | 31 | 41 | 16 | 16 |
P value = 0.751 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
PIK3CA MUTATED | 7 | 6 | 4 |
PIK3CA WILD-TYPE | 34 | 46 | 24 |
P value = 0.32 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
PIK3CA MUTATED | 4 | 7 | 2 | 6 | 7 | 1 |
PIK3CA WILD-TYPE | 14 | 27 | 8 | 22 | 63 | 17 |
P value = 0.614 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
PIK3CA MUTATED | 2 | 4 | 0 | 5 |
PIK3CA WILD-TYPE | 13 | 18 | 10 | 22 |
P value = 0.851 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
PIK3CA MUTATED | 6 | 7 | 4 | 0 |
PIK3CA WILD-TYPE | 26 | 38 | 25 | 6 |
P value = 0.758 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
PIK3CA MUTATED | 3 | 5 | 4 | 4 | 1 | 0 |
PIK3CA WILD-TYPE | 19 | 15 | 20 | 22 | 13 | 6 |
P value = 0.562 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
PIK3CA MUTATED | 7 | 7 | 10 | 3 |
PIK3CA WILD-TYPE | 30 | 54 | 42 | 25 |
P value = 0.588 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
PIK3CA MUTATED | 11 | 9 | 7 |
PIK3CA WILD-TYPE | 57 | 65 | 29 |
P value = 0.716 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
PIK3CA MUTATED | 16 | 0 | 4 | 4 |
PIK3CA WILD-TYPE | 76 | 8 | 30 | 24 |
P value = 0.373 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
PIK3CA MUTATED | 3 | 11 | 8 | 2 |
PIK3CA WILD-TYPE | 32 | 40 | 46 | 20 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
PIK3CA MUTATED | 1 | 4 | 3 | 1 |
PIK3CA WILD-TYPE | 6 | 14 | 14 | 5 |
P value = 0.49 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
PIK3CA MUTATED | 1 | 6 | 2 |
PIK3CA WILD-TYPE | 2 | 22 | 15 |
P value = 0.283 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
RB1 MUTATED | 2 | 5 | 0 | 3 |
RB1 WILD-TYPE | 34 | 41 | 19 | 17 |
P value = 0.643 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
RB1 MUTATED | 2 | 5 | 3 |
RB1 WILD-TYPE | 39 | 47 | 25 |
P value = 0.159 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
RB1 MUTATED | 2 | 1 | 0 | 5 | 4 | 0 |
RB1 WILD-TYPE | 16 | 33 | 10 | 23 | 66 | 18 |
P value = 0.794 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
RB1 MUTATED | 1 | 2 | 1 | 1 |
RB1 WILD-TYPE | 14 | 20 | 9 | 26 |
P value = 0.097 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
RB1 MUTATED | 0 | 2 | 3 | 1 |
RB1 WILD-TYPE | 32 | 43 | 26 | 5 |
P value = 0.568 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
RB1 MUTATED | 0 | 1 | 2 | 3 | 0 | 0 |
RB1 WILD-TYPE | 22 | 19 | 22 | 23 | 14 | 6 |
P value = 0.589 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
RB1 MUTATED | 1 | 4 | 4 | 3 |
RB1 WILD-TYPE | 36 | 57 | 48 | 25 |
P value = 0.24 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
RB1 MUTATED | 2 | 6 | 4 |
RB1 WILD-TYPE | 66 | 68 | 32 |
P value = 0.18 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
RB1 MUTATED | 9 | 1 | 0 | 2 |
RB1 WILD-TYPE | 83 | 7 | 34 | 26 |
P value = 0.754 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
RB1 MUTATED | 2 | 3 | 6 | 1 |
RB1 WILD-TYPE | 33 | 48 | 48 | 21 |
P value = 0.307 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
CYP11B1 MUTATED | 2 | 5 | 4 | 1 |
CYP11B1 WILD-TYPE | 34 | 41 | 15 | 19 |
P value = 0.678 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
CYP11B1 MUTATED | 3 | 5 | 4 |
CYP11B1 WILD-TYPE | 38 | 47 | 24 |
P value = 0.763 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
CYP11B1 MUTATED | 1 | 3 | 0 | 3 | 5 | 3 |
CYP11B1 WILD-TYPE | 17 | 31 | 10 | 25 | 65 | 15 |
P value = 0.602 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
CYP11B1 MUTATED | 0 | 1 | 0 | 3 |
CYP11B1 WILD-TYPE | 15 | 21 | 10 | 24 |
P value = 0.671 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
CYP11B1 MUTATED | 2 | 3 | 4 | 0 |
CYP11B1 WILD-TYPE | 30 | 42 | 25 | 6 |
P value = 0.444 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
CYP11B1 MUTATED | 2 | 4 | 1 | 2 | 0 | 0 |
CYP11B1 WILD-TYPE | 20 | 16 | 23 | 24 | 14 | 6 |
P value = 0.685 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
CYP11B1 MUTATED | 2 | 4 | 6 | 3 |
CYP11B1 WILD-TYPE | 35 | 57 | 46 | 25 |
P value = 0.37 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
CYP11B1 MUTATED | 4 | 6 | 5 |
CYP11B1 WILD-TYPE | 64 | 68 | 31 |
P value = 0.543 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
CYP11B1 MUTATED | 9 | 0 | 1 | 3 |
CYP11B1 WILD-TYPE | 83 | 8 | 33 | 25 |
P value = 0.977 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
CYP11B1 MUTATED | 3 | 4 | 5 | 1 |
CYP11B1 WILD-TYPE | 32 | 47 | 49 | 21 |
P value = 0.627 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
NOTCH1 MUTATED | 1 | 3 | 2 | 1 |
NOTCH1 WILD-TYPE | 35 | 43 | 17 | 19 |
P value = 0.604 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
NOTCH1 MUTATED | 1 | 4 | 2 |
NOTCH1 WILD-TYPE | 40 | 48 | 26 |
P value = 0.985 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
NOTCH1 MUTATED | 2 | 3 | 0 | 2 | 6 | 1 |
NOTCH1 WILD-TYPE | 16 | 31 | 10 | 26 | 64 | 17 |
P value = 0.0603 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
NOTCH1 MUTATED | 2 | 4 | 2 | 0 |
NOTCH1 WILD-TYPE | 13 | 18 | 8 | 27 |
P value = 0.508 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
NOTCH1 MUTATED | 3 | 3 | 1 | 1 |
NOTCH1 WILD-TYPE | 29 | 42 | 28 | 5 |
P value = 0.587 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
NOTCH1 MUTATED | 1 | 2 | 1 | 4 | 0 | 0 |
NOTCH1 WILD-TYPE | 21 | 18 | 23 | 22 | 14 | 6 |
P value = 0.771 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
NOTCH1 MUTATED | 2 | 6 | 5 | 1 |
NOTCH1 WILD-TYPE | 35 | 55 | 47 | 27 |
P value = 0.391 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
NOTCH1 MUTATED | 3 | 8 | 3 |
NOTCH1 WILD-TYPE | 65 | 66 | 33 |
P value = 0.397 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
NOTCH1 MUTATED | 8 | 0 | 1 | 4 |
NOTCH1 WILD-TYPE | 84 | 8 | 33 | 24 |
P value = 0.319 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
NOTCH1 MUTATED | 4 | 3 | 6 | 0 |
NOTCH1 WILD-TYPE | 31 | 48 | 48 | 22 |
P value = 0.00489 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
NOTCH1 MUTATED | 1 | 1 | 0 | 3 |
NOTCH1 WILD-TYPE | 6 | 17 | 17 | 3 |
P value = 0.102 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
NOTCH1 MUTATED | 1 | 4 | 0 |
NOTCH1 WILD-TYPE | 2 | 24 | 17 |
P value = 0.592 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
ASB5 MUTATED | 1 | 4 | 2 | 2 |
ASB5 WILD-TYPE | 35 | 42 | 17 | 18 |
P value = 0.553 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
ASB5 MUTATED | 2 | 4 | 3 |
ASB5 WILD-TYPE | 39 | 48 | 25 |
P value = 0.195 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
ASB5 MUTATED | 1 | 0 | 2 | 1 | 4 | 1 |
ASB5 WILD-TYPE | 17 | 34 | 8 | 27 | 66 | 17 |
P value = 0.453 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
ASB5 MUTATED | 0 | 1 | 2 | 0 |
ASB5 WILD-TYPE | 32 | 44 | 27 | 6 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
ASB5 MUTATED | 1 | 0 | 1 | 1 | 0 | 0 |
ASB5 WILD-TYPE | 21 | 20 | 23 | 25 | 14 | 6 |
P value = 0.478 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
ASB5 MUTATED | 1 | 4 | 4 | 0 |
ASB5 WILD-TYPE | 36 | 57 | 48 | 28 |
P value = 0.494 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
ASB5 MUTATED | 2 | 4 | 3 |
ASB5 WILD-TYPE | 66 | 70 | 33 |
P value = 0.216 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
ASB5 MUTATED | 7 | 0 | 0 | 0 |
ASB5 WILD-TYPE | 85 | 8 | 34 | 28 |
P value = 0.335 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
ASB5 MUTATED | 0 | 4 | 2 | 1 |
ASB5 WILD-TYPE | 35 | 47 | 52 | 21 |
P value = 0.289 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
IRF6 MUTATED | 1 | 1 | 2 | 0 |
IRF6 WILD-TYPE | 35 | 45 | 17 | 20 |
P value = 0.443 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
IRF6 MUTATED | 1 | 1 | 2 |
IRF6 WILD-TYPE | 40 | 51 | 26 |
P value = 0.632 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
IRF6 MUTATED | 0 | 3 | 0 | 1 | 2 | 0 |
IRF6 WILD-TYPE | 18 | 31 | 10 | 27 | 68 | 18 |
P value = 0.558 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
IRF6 MUTATED | 1 | 0 | 0 | 2 |
IRF6 WILD-TYPE | 14 | 22 | 10 | 25 |
P value = 0.797 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
IRF6 MUTATED | 1 | 2 | 2 | 0 |
IRF6 WILD-TYPE | 31 | 43 | 27 | 6 |
P value = 0.143 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
IRF6 MUTATED | 0 | 3 | 1 | 0 | 1 | 0 |
IRF6 WILD-TYPE | 22 | 17 | 23 | 26 | 13 | 6 |
P value = 0.763 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
IRF6 MUTATED | 2 | 1 | 2 | 1 |
IRF6 WILD-TYPE | 35 | 60 | 50 | 27 |
P value = 0.749 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
IRF6 MUTATED | 2 | 2 | 2 |
IRF6 WILD-TYPE | 66 | 72 | 34 |
P value = 0.125 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
IRF6 MUTATED | 1 | 1 | 1 | 1 |
IRF6 WILD-TYPE | 91 | 7 | 33 | 27 |
P value = 0.819 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
IRF6 MUTATED | 1 | 1 | 1 | 1 |
IRF6 WILD-TYPE | 34 | 50 | 53 | 21 |
P value = 0.134 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
EP300 MUTATED | 5 | 2 | 0 | 0 |
EP300 WILD-TYPE | 31 | 44 | 19 | 20 |
P value = 0.117 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
EP300 MUTATED | 5 | 2 | 0 |
EP300 WILD-TYPE | 36 | 50 | 28 |
P value = 0.16 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
EP300 MUTATED | 3 | 0 | 0 | 1 | 3 | 1 |
EP300 WILD-TYPE | 15 | 34 | 10 | 27 | 67 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
EP300 MUTATED | 1 | 1 | 1 | 0 |
EP300 WILD-TYPE | 31 | 44 | 28 | 6 |
P value = 0.713 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
EP300 MUTATED | 0 | 0 | 1 | 2 | 0 | 0 |
EP300 WILD-TYPE | 22 | 20 | 23 | 24 | 14 | 6 |
P value = 0.0858 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
EP300 MUTATED | 3 | 0 | 3 | 2 |
EP300 WILD-TYPE | 34 | 61 | 49 | 26 |
P value = 0.0822 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
EP300 MUTATED | 6 | 1 | 1 |
EP300 WILD-TYPE | 62 | 73 | 35 |
P value = 0.213 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
EP300 MUTATED | 7 | 0 | 0 | 0 |
EP300 WILD-TYPE | 85 | 8 | 34 | 28 |
P value = 0.823 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
EP300 MUTATED | 1 | 3 | 3 | 0 |
EP300 WILD-TYPE | 34 | 48 | 51 | 22 |
P value = 0.469 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
CPS1 MUTATED | 4 | 6 | 5 | 3 |
CPS1 WILD-TYPE | 32 | 40 | 14 | 17 |
P value = 0.208 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
CPS1 MUTATED | 4 | 7 | 7 |
CPS1 WILD-TYPE | 37 | 45 | 21 |
P value = 0.501 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
CPS1 MUTATED | 2 | 3 | 3 | 5 | 10 | 1 |
CPS1 WILD-TYPE | 16 | 31 | 7 | 23 | 60 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
CPS1 MUTATED | 1 | 2 | 1 | 3 |
CPS1 WILD-TYPE | 14 | 20 | 9 | 24 |
P value = 0.619 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
CPS1 MUTATED | 5 | 7 | 2 | 1 |
CPS1 WILD-TYPE | 27 | 38 | 27 | 5 |
P value = 0.857 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
CPS1 MUTATED | 2 | 3 | 5 | 3 | 2 | 0 |
CPS1 WILD-TYPE | 20 | 17 | 19 | 23 | 12 | 6 |
P value = 0.959 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
CPS1 MUTATED | 4 | 9 | 7 | 4 |
CPS1 WILD-TYPE | 33 | 52 | 45 | 24 |
P value = 0.848 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
CPS1 MUTATED | 8 | 11 | 5 |
CPS1 WILD-TYPE | 60 | 63 | 31 |
P value = 0.13 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
CPS1 MUTATED | 6 | 1 | 6 | 5 |
CPS1 WILD-TYPE | 86 | 7 | 28 | 23 |
P value = 0.128 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
CPS1 MUTATED | 6 | 2 | 6 | 4 |
CPS1 WILD-TYPE | 29 | 49 | 48 | 18 |
P value = 0.595 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
CPS1 MUTATED | 1 | 3 | 1 | 0 |
CPS1 WILD-TYPE | 6 | 15 | 16 | 6 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
CPS1 MUTATED | 0 | 3 | 2 |
CPS1 WILD-TYPE | 3 | 25 | 15 |
P value = 0.309 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
ARID1A MUTATED | 1 | 5 | 1 | 3 |
ARID1A WILD-TYPE | 35 | 41 | 18 | 17 |
P value = 0.644 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
ARID1A MUTATED | 2 | 5 | 3 |
ARID1A WILD-TYPE | 39 | 47 | 25 |
P value = 0.292 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
ARID1A MUTATED | 0 | 4 | 1 | 0 | 6 | 2 |
ARID1A WILD-TYPE | 18 | 30 | 9 | 28 | 64 | 16 |
P value = 0.638 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
ARID1A MUTATED | 0 | 2 | 0 | 3 |
ARID1A WILD-TYPE | 15 | 20 | 10 | 24 |
P value = 0.142 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
ARID1A MUTATED | 4 | 1 | 1 | 1 |
ARID1A WILD-TYPE | 28 | 44 | 28 | 5 |
P value = 0.674 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
ARID1A MUTATED | 1 | 3 | 1 | 2 | 0 | 0 |
ARID1A WILD-TYPE | 21 | 17 | 23 | 24 | 14 | 6 |
P value = 0.177 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
ARID1A MUTATED | 0 | 5 | 6 | 2 |
ARID1A WILD-TYPE | 37 | 56 | 46 | 26 |
P value = 0.809 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
ARID1A MUTATED | 4 | 6 | 3 |
ARID1A WILD-TYPE | 64 | 68 | 33 |
P value = 0.53 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
ARID1A MUTATED | 5 | 0 | 4 | 2 |
ARID1A WILD-TYPE | 87 | 8 | 30 | 26 |
P value = 0.503 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
ARID1A MUTATED | 4 | 2 | 3 | 2 |
ARID1A WILD-TYPE | 31 | 49 | 51 | 20 |
P value = 0.0245 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
SLC28A1 MUTATED | 0 | 1 | 3 | 0 |
SLC28A1 WILD-TYPE | 36 | 45 | 16 | 20 |
P value = 0.0502 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
SLC28A1 MUTATED | 0 | 1 | 3 |
SLC28A1 WILD-TYPE | 41 | 51 | 25 |
P value = 0.0311 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
SLC28A1 MUTATED | 1 | 4 | 1 | 2 | 0 | 1 |
SLC28A1 WILD-TYPE | 17 | 30 | 9 | 26 | 70 | 17 |
P value = 0.298 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
SLC28A1 MUTATED | 2 | 0 | 1 | 2 |
SLC28A1 WILD-TYPE | 13 | 22 | 9 | 25 |
P value = 0.413 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
SLC28A1 MUTATED | 2 | 4 | 0 | 0 |
SLC28A1 WILD-TYPE | 30 | 41 | 29 | 6 |
P value = 0.458 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
SLC28A1 MUTATED | 1 | 1 | 2 | 0 | 2 | 0 |
SLC28A1 WILD-TYPE | 21 | 19 | 22 | 26 | 12 | 6 |
P value = 0.0454 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
SLC28A1 MUTATED | 3 | 0 | 5 | 1 |
SLC28A1 WILD-TYPE | 34 | 61 | 47 | 27 |
P value = 0.0271 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
SLC28A1 MUTATED | 3 | 1 | 5 |
SLC28A1 WILD-TYPE | 65 | 73 | 31 |
P value = 0.0118 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
SLC28A1 MUTATED | 2 | 1 | 5 | 0 |
SLC28A1 WILD-TYPE | 90 | 7 | 29 | 28 |
P value = 0.017 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
SLC28A1 MUTATED | 0 | 1 | 3 | 4 |
SLC28A1 WILD-TYPE | 35 | 50 | 51 | 18 |
P value = 0.287 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
SLC28A1 MUTATED | 1 | 0 | 2 | 1 |
SLC28A1 WILD-TYPE | 6 | 18 | 15 | 5 |
P value = 0.712 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
SLC28A1 MUTATED | 0 | 2 | 2 |
SLC28A1 WILD-TYPE | 3 | 26 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
POLR2B MUTATED | 1 | 2 | 0 | 0 |
POLR2B WILD-TYPE | 35 | 44 | 19 | 20 |
P value = 0.791 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
POLR2B MUTATED | 1 | 2 | 0 |
POLR2B WILD-TYPE | 40 | 50 | 28 |
P value = 0.292 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
POLR2B MUTATED | 1 | 0 | 1 | 0 | 3 | 1 |
POLR2B WILD-TYPE | 17 | 34 | 9 | 28 | 67 | 17 |
P value = 0.165 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
POLR2B MUTATED | 2 | 1 | 0 | 0 |
POLR2B WILD-TYPE | 13 | 21 | 10 | 27 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
POLR2B MUTATED | 1 | 2 | 1 | 0 |
POLR2B WILD-TYPE | 31 | 43 | 28 | 6 |
P value = 0.202 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
POLR2B MUTATED | 0 | 0 | 2 | 1 | 0 | 1 |
POLR2B WILD-TYPE | 22 | 20 | 22 | 25 | 14 | 5 |
P value = 0.476 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
POLR2B MUTATED | 0 | 2 | 2 | 2 |
POLR2B WILD-TYPE | 37 | 59 | 50 | 26 |
P value = 0.312 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
POLR2B MUTATED | 4 | 2 | 0 |
POLR2B WILD-TYPE | 64 | 72 | 36 |
P value = 0.0112 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
POLR2B MUTATED | 1 | 2 | 2 | 0 |
POLR2B WILD-TYPE | 91 | 6 | 32 | 28 |
P value = 0.451 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
POLR2B MUTATED | 0 | 1 | 3 | 1 |
POLR2B WILD-TYPE | 35 | 50 | 51 | 21 |
P value = 0.167 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 18 | 17 | 6 |
POLR2B MUTATED | 1 | 0 | 1 | 1 |
POLR2B WILD-TYPE | 6 | 18 | 16 | 5 |
P value = 0.215 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 3 | 28 | 17 |
POLR2B MUTATED | 1 | 1 | 1 |
POLR2B WILD-TYPE | 2 | 27 | 16 |
P value = 0.829 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
HRAS MUTATED | 2 | 2 | 0 | 0 |
HRAS WILD-TYPE | 34 | 44 | 19 | 20 |
P value = 0.68 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
HRAS MUTATED | 2 | 2 | 0 |
HRAS WILD-TYPE | 39 | 50 | 28 |
P value = 0.289 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
HRAS MUTATED | 0 | 0 | 1 | 0 | 3 | 1 |
HRAS WILD-TYPE | 18 | 34 | 9 | 28 | 67 | 17 |
P value = 0.931 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
HRAS MUTATED | 1 | 2 | 2 | 0 |
HRAS WILD-TYPE | 36 | 59 | 50 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
HRAS MUTATED | 2 | 2 | 1 |
HRAS WILD-TYPE | 66 | 72 | 35 |
P value = 0.0972 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
HRAS MUTATED | 2 | 1 | 0 | 2 |
HRAS WILD-TYPE | 90 | 7 | 34 | 26 |
P value = 0.75 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
HRAS MUTATED | 2 | 1 | 2 | 0 |
HRAS WILD-TYPE | 33 | 50 | 52 | 22 |
P value = 0.235 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 46 | 19 | 20 |
PI16 MUTATED | 0 | 2 | 2 | 1 |
PI16 WILD-TYPE | 36 | 44 | 17 | 19 |
P value = 0.718 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
PI16 MUTATED | 1 | 2 | 2 |
PI16 WILD-TYPE | 40 | 50 | 26 |
P value = 0.424 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 34 | 10 | 28 | 70 | 18 |
PI16 MUTATED | 0 | 0 | 0 | 2 | 5 | 0 |
PI16 WILD-TYPE | 18 | 34 | 10 | 26 | 65 | 18 |
P value = 0.023 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 15 | 22 | 10 | 27 |
PI16 MUTATED | 0 | 4 | 0 | 0 |
PI16 WILD-TYPE | 15 | 18 | 10 | 27 |
P value = 0.0446 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 45 | 29 | 6 |
PI16 MUTATED | 3 | 0 | 1 | 1 |
PI16 WILD-TYPE | 29 | 45 | 28 | 5 |
P value = 0.287 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 22 | 20 | 24 | 26 | 14 | 6 |
PI16 MUTATED | 1 | 2 | 0 | 1 | 0 | 1 |
PI16 WILD-TYPE | 21 | 18 | 24 | 25 | 14 | 5 |
P value = 0.733 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 61 | 52 | 28 |
PI16 MUTATED | 1 | 4 | 1 | 1 |
PI16 WILD-TYPE | 36 | 57 | 51 | 27 |
P value = 0.883 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 68 | 74 | 36 |
PI16 MUTATED | 2 | 4 | 1 |
PI16 WILD-TYPE | 66 | 70 | 35 |
P value = 0.726 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 92 | 8 | 34 | 28 |
PI16 MUTATED | 3 | 0 | 1 | 2 |
PI16 WILD-TYPE | 89 | 8 | 33 | 26 |
P value = 0.489 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 51 | 54 | 22 |
PI16 MUTATED | 1 | 1 | 4 | 0 |
PI16 WILD-TYPE | 34 | 50 | 50 | 22 |
-
Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
-
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/22595684/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUSC-TP/22552638/LUSC-TP.transferedmergedcluster.txt
-
Number of patients = 178
-
Number of significantly mutated genes = 19
-
Number of Molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.