Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL MIR_CNMF MIR_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nMutated (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q TP53 385 (83%) 81 0.65383 1 0.21891 1 0.51243 1 0.31323 1 0.04845 0.835 0.04416 0.811 0.30279 1 0.23671 1 0.74356 1 0.56413 1 0.45517 1 0.91384 1 NA NA NA NA RB1 15 (3%) 451 0.14384 0.969 0.28516 1 0.79206 1 0.93104 1 0.13813 0.969 0.87907 1 0.81921 1 0.27948 1 0.23287 1 0.76734 1 0.26434 1 0.26912 1 NA NA NA NA BRCA1 18 (4%) 448 0.30962 1 0.53348 1 0.32224 1 0.99259 1 0.01691 0.597 0.057789 0.835 0.2084 1 0.3555 1 0.068459 0.835 0.92877 1 0.01827 0.597 0.13198 0.969 NA NA NA NA NF1 24 (5%) 442 0.2393 1 0.53936 1 0.74472 1 0.73038 1 0.45983 1 0.03817 0.748 0.075479 0.835 0.0089599 0.576 0.22871 1 0.23191 1 0.93209 1 0.23527 1 NA NA NA NA CDK12 15 (3%) 451 0.076709 0.835 0.11937 0.969 0.03101 0.659 0.67942 1 0.39166 1 0.22551 1 0.72237 1 0.33057 1 0.47299 1 0.90466 1 0.92775 1 0.83899 1 NA NA NA NA KRAS 5 (1%) 461 0.02106 0.619 0.35807 1 0.02964 0.659 0.39451 1 0.0055699 0.576 0.081729 0.858 0.065059 0.835 1 1 0.35814 1 0.41788 1 0.28625 1 0.52023 1 NA NA NA NA HNF1B 5 (1%) 461 0.82102 1 0.55773 1 1 1 0.60103 1 0.17253 1 0.25747 1 0.0097999 0.576 0.58793 1 0.35645 1 0.41717 1 0.47938 1 0.58701 1 NA NA NA NA PTEN 5 (1%) 461 0.65253 1 0.55888 1 0.30682 1 0.14345 0.969 0.54949 1 0.11237 0.969 1 1 0.50713 1 0.78658 1 0.75564 1 1 1 0.82994 1 NA NA NA NA LARP1 4 (1%) 462 0.84393 1 0.02974 0.659 0.56326 1 0.17556 1 0.83247 1 0.64743 1 0.21401 1 0.24295 1 NA NA NA NA 1 1 0.11722 0.969 NA NA NA NA BRCA2 13 (3%) 453 0.96154 1 0.53004 1 1 1 0.65061 1 0.82012 1 0.32352 1 0.65608 1 0.46579 1 0.55735 1 0.87737 1 0.70004 1 0.5765 1 NA NA NA NA EFEMP1 7 (2%) 459 0.84283 1 1 1 0.14549 0.969 0.747 1 0.43391 1 0.53202 1 0.60197 1 0.85937 1 NA NA NA NA 0.35877 1 0.47748 1 NA NA NA NA NRAS 4 (1%) 462 0.7832 1 0.3687 1 0.45327 1 0.20229 1 0.12481 0.969 0.295 1 1 1 0.86239 1 NA NA NA NA 0.58899 1 0.23108 1 NA NA NA NA MTA2 4 (1%) 462 0.31458 1 0.36893 1 0.69044 1 0.84136 1 0.79657 1 0.14422 0.969 0.53437 1 0.65474 1 NA NA NA NA NA NA NA NA NA NA NA NA ERCC6 4 (1%) 462 1 1 0.18642 1 0.03137 0.659 0.2762 1 0.83095 1 0.23922 1 0.77703 1 1 1 NA NA NA NA 0.21928 1 0.27338 1 NA NA NA NA IL21R 8 (2%) 458 0.0083999 0.576 0.14832 0.969 1 1 0.01825 0.597 0.070379 0.835 0.092839 0.91 0.80495 1 0.11589 0.969 0.26472 1 0.12275 0.969 0.1659 1 0.55202 1 NA NA NA NA PKD1L1 6 (1%) 460 0.94596 1 0.86464 1 0.76784 1 0.4761 1 0.51067 1 0.14137 0.969 0.24269 1 0.18899 1 0.82683 1 0.39046 1 0.27463 1 0.35593 1 NA NA NA NA SAMD9L 9 (2%) 457 0.79378 1 0.89554 1 0.3895 1 0.98073 1 0.69162 1 0.80327 1 0.075699 0.835 0.40238 1 0.85162 1 0.58471 1 0.60629 1 1 1 NA NA NA NA AQP2 3 (1%) 463 0.24111 1 0.12463 0.969 0.61066 1 0.64952 1 0.45003 1 0.057289 0.835 0.77615 1 1 1 NA NA NA NA NA NA NA NA NA NA NA NA CREBBP 11 (2%) 455 1 1 0.63233 1 0.85927 1 0.49384 1 0.79392 1 0.090449 0.91 0.44873 1 0.83291 1 0.45164 1 0.58199 1 1 1 0.63686 1 NA NA NA NA C9ORF171 5 (1%) 461 0.01478 0.597 0.00424 0.576 0.53049 1 0.25472 1 0.54792 1 0.22345 1 0.40098 1 0.16565 1 NA NA NA NA 0.057399 0.835 0.49637 1 NA NA NA NA NCOA3 5 (1%) 461 0.36743 1 0.22557 1 1 1 0.64154 1 0.45824 1 0.073679 0.835 NA NA NA NA NA NA NA NA 0.26266 1 0.22872 1 NA NA NA NA