Hybridization REF p difference q subclass Composite Element REF p difference q subclass SFRS1|SF2 2.37419612343976e-06 1.50999562642679 0.000113961413925108 1 MYH11|MYH11 0.00543160884194457 1.07959991667321 0.0293460792054487 1 CAV1|CAVEOLIN-1 0.000208818221206198 0.953217377194643 0.00364482713378091 1 CDKN1A|P21 0.00565523401355 0.783576275030357 0.0293460792054487 1 YAP1|YAP_PS127 5.39937695862437e-05 0.740063024233929 0.00129585047006985 1 RICTOR|RICTOR 0.0122562327225619 0.5309863721875 0.0412841523286296 1 CHEK2|CHK2 7.71746339449171e-05 0.523941977819643 0.0016463921908249 1 XBP1|XBP1 0.000274145065356942 0.486977521291071 0.00375970375346663 1 GSK3A GSK3B|GSK3_PS9 0.000671417211168933 0.412687709255357 0.00716178358580195 1 NDRG1|NDRG1_PT346 0.00379230182500198 0.380840091280357 0.0234878048516252 1 SRC|SRC_PY527 0.0279396208141738 0.337223310451786 0.0755644594507084 1 BECN1|BECLIN 0.000268755216618314 0.294458202116071 0.00375970375346663 1 EGFR|EGFR_PY1068 0.00032356479943752 0.283521326058929 0.00414162943280026 1 PRDX1|PRDX1 0.0108488573060577 0.273897218476786 0.0390828625182752 1 ERBB2|HER2 0.0165672682168593 0.2609369693375 0.0502993004463121 1 CTNNB1|ALPHA-CATENIN 5.00622595593242e-05 0.254492887533929 0.00129585047006985 1 PECAM1|CD31 0.000130927461031135 0.253683194108929 0.00251380725179779 1 BCL2L11|BIM 0.0170284090052619 0.252467216833929 0.0502993004463121 1 MSH2|MSH2 0.00431236984862702 0.249609358976786 0.024454877684747 1 PIK3CA |PI3K-P110-ALPHA 1.54765157569517e-05 0.2358947977375 0.000594298205066945 1 STAT3|STAT3_PY705 0.03230443035745 0.231219827998214 0.0861451476198667 1 YAP1|YAP 0.00311234502656508 0.221542673983929 0.0204104470698618 1 EEF2|EEF2 0.00249116313288947 0.214958945944643 0.0182430207006704 1 ANXA1|ANNEXIN-1 0.039890593433779 0.2120272723125 0.0994674537569554 1 NOTCH1|NOTCH1 0.00113348352757178 0.2074521663375 0.0108814418646891 1 SRC|SRC_PY416 0.0437195772403549 0.205025116558929 0.107617420899335 1 CCNE1|CYCLIN_E1 0.0383499290281894 0.200633953230357 0.0968840312291101 1 CHEK1|CHK1 0.00788272669007663 0.196041177130357 0.0317921926990304 1 JUN|C-JUN_PS73 0.00794804817475761 0.1853553293125 0.0317921926990304 1 FOXO3|FOXO3A 0.00256542478603178 0.169394414773214 0.0182430207006704 1 SCD1|SCD1 6.03934722211937e-07 0.164788110444643 3.8651822221564e-05 1 EGFR|EGFR 0.00249389308284226 0.161987704183929 0.0182430207006704 1 TP53|P53 0.0153432334981139 0.1598581974125 0.0490983471939645 1 BRCA2|BRCA2 0.00433055125667394 0.159318863398214 0.024454877684747 1 FOXO3|FOXO3A_PS318_S321 0.00919361964087203 0.150428354919643 0.0353034994209486 1 RAD50|RAD50 0.00186943276484693 0.144199983491072 0.0156056996022005 1 PREX1|PREX1 0.0206768729916113 0.143720141655357 0.0592531285729757 1 TSC2|TUBERIN_PT1462 0.0279431074010432 0.139968676430357 0.0755644594507084 1 INPP4B|INPP4B 0.0126286635779281 0.126120383333929 0.0418052311545206 1 PRKCD|PKC-DELTA_PS664 0.013296670153606 0.123946956194643 0.0432705198219043 1 ESR1|ER-ALPHA 0.037107290308832 0.122401486041071 0.0949946631906099 1 ARAF|A-RAF_PS299 0.00702557786676524 0.110161661905357 0.0313700221027657 1 CCNE2|CYCLIN_E2 0.0336302945253888 -0.0762150779410714 0.0884522814914336 1 ARHI|ARHI 0.0216944978128561 -0.0971395407267857 0.0612550526480643 1 ESR1|ER-ALPHA_PS118 0.00592940924999251 -0.107490612851786 0.0299591204210148 1 STK11|LKB1 0.0109920550832649 -0.1095691385625 0.0390828625182752 1 BIRC2 |CIAP 0.00120781669865994 -0.111027178766071 0.0110428955306052 1 RPTOR|RAPTOR 0.0161804106575672 -0.112192021519643 0.0502993004463121 1 CHEK2|CHK2_PT68 0.0103015203187268 -0.112656961666071 0.038036382715299 1 MAP2K1|MEK1_PS217_S221 0.00655778161429172 -0.1185417858875 0.0307351429044218 1 RAB11A RAB11B|RAB11 0.0352412988259563 -0.120752951116071 0.0914368834403191 1 EIF4EBP1|4E-BP1_PT70 0.0198102111279374 -0.126517918830357 0.0576297050994543 1 MET|C-MET_PY1235 0.000715199355806449 -0.1284618289625 0.00722727770078096 1 YWHAE|14-3-3_EPSILON 0.00943318475561592 -0.132056790844643 0.0355131661387893 1 PDK1|PDK1 0.00237082691117702 -0.137292668091071 0.0182430207006704 1 MRE11A|MRE11 0.0031891323546659 -0.139153464483929 0.0204104470698618 1 CDKN1B|P27_PT157 4.76721449838983e-05 -0.1459421494875 0.00129585047006985 1 YBX1|YB-1_PS102 0.00416781553489039 -0.148282608698214 0.024454877684747 1 SMAD3|SMAD3 0.0055082742567124 -0.1523930219625 0.0293460792054487 1 BID|BID 0.0113505120514322 -0.1556869069625 0.0396236057068179 1 ANXA7 |ANNEXIN_VII 0.00296392489671761 -0.156376004144643 0.020324056434635 1 MAPK9|JNK2 0.0117180009380926 -0.164079672216071 0.0401760032163175 1 EGFR|EGFR_PY1173 0.00165098157324379 -0.165615233069643 0.0144085664574003 1 WWTR1|TAZ 0.000623382827191325 -0.184731599926786 0.00704055898945497 1 PTEN|PTEN 0.0225884390640906 -0.185330866005357 0.0628547869609477 1 NRG1|HEREGULIN 0.00618227671253415 -0.206222145173214 0.0304358238155527 1 STMN1|STATHMIN 0.000580077213812073 -0.2085590295125 0.00696092656574488 1 GAPDH|GAPDH 0.0168934733572014 -0.243440345769643 0.0502993004463121 1 RPS6KA1|P90RSK 0.0471070832277228 -0.2491654105875 0.114488101009149 1 CHEK1|CHK1_PS345 0.00787758984665671 -0.266797847826786 0.0317921926990304 1 COL6A1|COLLAGEN_VI 0.000267019444012373 -0.344326099808929 0.00375970375346663 1 GAB2|GAB2 0.00672331251034227 -0.345844233876786 0.0307351429044218 1 RAF1|C-RAF_PS338 1.29135765872117e-07 -0.387798816580357 1.23970335237232e-05 1 ERBB3|HER3 0.00725918666749829 -0.444793795669643 0.0316764509127198 1 TUBA1B|ACETYL-A-TUBULIN-LYS40 0.0166397314010983 -0.464602399380357 0.0502993004463121 1 SERPINE1|PAI-1 0.00672101675259497 -0.655138926666071 0.0307351429044218 1 RB1|RB_PS807_S811 0.00831936764170881 -0.658148740516071 0.0325983385144508 1 BAK1|BAK 0.00756434059888132 -0.670735319983929 0.0317921926990304 1 IGFBP2|IGFBP2 7.79232990641497e-08 -2.24516481185179 1.23970335237232e-05 1 IGFBP2|IGFBP2 1.20123250750527e-06 2.67807887525979 7.68788804803373e-05 2 EIF4EBP1|4E-BP1_PT37_T46 2.85858993899157e-07 1.59535881841783 2.74424634143191e-05 2 RB1|RB_PS807_S811 1.72023648133109e-09 1.40709996492692 3.30285404415569e-07 2 PDCD4|PDCD4 1.71172295451655e-06 1.02663546044021 8.21627018167944e-05 2 BAK1|BAK 4.74364341835189e-06 1.02396684405839 0.00015179658938726 2 MAPK14|P38_PT180_Y182 0.000269635387847318 0.882416070171678 0.00419162655202709 2 CDKN1A|P21 0.0273956248061872 0.791368980305944 0.083491427980761 2 PKC|PKC-PAN_BETAII_PS660 2.81503412047884e-06 0.729178783222028 0.000108097310226387 2 AKT1 AKT2 AKT3|AKT_PS473 0.0175410240993387 0.527311829275175 0.064055923697935 2 STAT5A|STAT5-ALPHA 0.00115242902811239 0.503606315731119 0.0116455985998726 2 RPS6KA1|P90RSK 0.000433328935036515 0.481254550829021 0.00554661036846739 2 GSK3A GSK3B|GSK3-ALPHA-BETA_PS21_S9 0.00219163527468606 0.417649453008042 0.0164708028891174 2 KDR|VEGFR2 0.0465388838717661 0.410529655862587 0.127507777807429 2 ACACA ACACB|ACC_PS79 0.00160896932866503 0.382844648643007 0.0147105767192231 2 CHEK1|CHK1_PS345 0.00923318998996021 0.375050317826224 0.0432396275147057 2 PTEN|PTEN 0.000252184766050515 0.359460487891958 0.00419162655202709 2 GSK3A GSK3B|GSK3_PS9 0.0205226149936488 0.352942855953496 0.0679369323927684 2 GATA3|GATA3 0.00963184506502623 0.344825556463986 0.0432396275147057 2 ACACA|ACC1 0.00441994395620403 0.326534615150699 0.0265196637372242 2 TUBA1B|ACETYL-A-TUBULIN-LYS40 0.045752146875001 0.317611009016434 0.127310321739133 2 MAPK14|P38 0.00809343517699697 0.315057016775874 0.0408931461574584 2 RAF1|C-RAF_PS338 0.00206716992588274 0.276503522648601 0.0164708028891174 2 PDK1|PDK1_PS241 0.0010294829714581 0.276298622045804 0.0109811516955531 2 SRC|SRC 0.024499376388268 0.265929717787063 0.075869036557217 2 FRAP1|MTOR_PS2448 0.0145802457142242 0.245356140171678 0.0583209828568968 2 PRKAA1|AMPK_ALPHA 1.50915292168423e-05 0.228316175877972 0.000413939087090532 2 COL6A1|COLLAGEN_VI 0.0224022794281074 0.227578663806643 0.07290233305418 2 RPS6KB1|P70S6K 0.00410942859454453 0.220704281216434 0.026300343005085 2 BAD|BAD_PS112 0.028629546406718 0.218182497356294 0.0845672755398439 2 AKT1S1|PRAS40_PT246 0.000801382063818532 0.190604122394056 0.0090509033090093 2 MAPK9|JNK2 0.0359046576959087 0.179969755205245 0.10289095936738 2 AKT1 AKT2 AKT3|AKT 0.0284562520025366 0.177103541061189 0.0845672755398439 2 ANXA7 |ANNEXIN_VII 0.00432369059550566 0.173172666767482 0.0265196637372242 2 GAPDH|GAPDH 0.047151313668372 0.17028471325 0.127507777807429 2 SCD1|SCD1 0.0176821039374508 -0.0812996132185315 0.064055923697935 2 BCL2L1|BCL-XL 0.0159439816862113 -0.100527753463287 0.0612248896750514 2 BID|BID 0.0329973839678604 -0.108797319543007 0.0959923897246848 2 CDH2|N-CADHERIN 0.0186980214722657 -0.111507528621329 0.0642160005699348 2 ERRFI1|MIG-6 0.0445458349279591 -0.113447442182168 0.125776475090708 2 C12ORF5|TIGAR 0.00959840368096107 -0.125096256301049 0.0432396275147057 2 PARK7|DJ-1 0.0170501755001323 -0.137913103337413 0.064055923697935 2 YWHAB|14-3-3_BETA 0.00710490651452813 -0.138406965647902 0.0373732984696424 2 IRS1|IRS1 0.00582615145283417 -0.143982572158392 0.0319606022555474 2 ITGA2|CD49B 0.007202146059254 -0.155361076032517 0.0373732984696424 2 PGR|PR 0.00026069772219424 -0.157330264505245 0.00419162655202709 2 DVL3|DVL3 0.0190641251691994 -0.169819185556993 0.0642160005699348 2 ACVRL1|ACVRL1 0.00225598957294722 -0.174212239068881 0.0164708028891174 2 ERBB2|HER2_PY1248 0.00231620665628214 -0.185969309673077 0.0164708028891174 2 CASP7|CASPASE-7_CLEAVEDD198 0.00122324384658156 -0.187916868766783 0.011743140927183 2 YAP1|YAP 0.0131802275918096 -0.188087060338811 0.0538426318644137 2 EIF4EBP1|4E-BP1 0.0243277896589582 -0.198287629936014 0.075869036557217 2 BRCA2|BRCA2 0.0119097391919066 -0.199707088438112 0.0497102157575232 2 FOXO3|FOXO3A 8.32230838839577e-05 -0.20342218195979 0.00177542578952443 2 ESR1|ER-ALPHA 0.000283808047793501 -0.204221067611538 0.00419162655202709 2 EEF2|EEF2 0.0102040112828076 -0.206763672838112 0.0444405940997594 2 CDH3|P-CADHERIN 0.0018760657199472 -0.21600428594021 0.0156610703578201 2 KIT|C-KIT 0.023171257078223 -0.217606802363986 0.0741480226503136 2 PECAM1|CD31 6.29418499611801e-05 -0.218096592703846 0.00151060439906832 2 EGFR|EGFR 0.00242000408811798 -0.219516969838112 0.0165943137470947 2 EGFR|EGFR_PY1068 0.0188534666794441 -0.222094069382168 0.0642160005699348 2 CHEK1|CHK1 0.00968387491214764 -0.224951017856294 0.0432396275147057 2 NOTCH1|NOTCH1 0.00482600649841482 -0.228898686450699 0.0280785832635044 2 BCL2L11|BIM 0.0153699857304497 -0.23588646815 0.060225250209109 2 MYC|C-MYC 0.0187085247596944 -0.247125065597552 0.0642160005699348 2 TP53|P53 0.000709645807774 -0.259460039603147 0.008515749693288 2 FOXM1|FOXM1 0.0017892524429606 -0.270253143033916 0.0156152940476561 2 NDRG1|NDRG1_PT346 0.0483476328746197 -0.304669858435315 0.128927020998986 2 RAD51|RAD51 0.00397719981882295 -0.350776536215734 0.026300343005085 2 HSPA1A|HSP70 0.00858740048716195 -0.369452357127622 0.0422764331675665 2 PRDX1|PRDX1 0.000369806183190169 -0.37743565974021 0.00507162765517946 2 XBP1|XBP1 0.0104157642421311 -0.391745205743007 0.0444405940997594 2 FN1|FIBRONECTIN 0.00580619979463606 -0.432507171454895 0.0319606022555474 2 MYC|C-MYC 0.0043813232407504 0.369185878016486 0.0262879394445024 3 HSPA1A|HSP70 0.0251098850074187 0.354765583208898 0.0951216783137886 3 RAD51|RAD51 0.0118537149042926 0.31044808842299 0.0541884109910519 3 NRG1|HEREGULIN 0.00531676548201682 0.263664210170054 0.0275897019607359 3 STMN1|STATHMIN 0.000194823536670085 0.261941450037263 0.00347098516000912 3 BID|BID 0.00166718150547649 0.227786286604562 0.0129056132569061 3 RAF1|C-RAF_PS338 0.0202965291694488 0.21376211009598 0.0865985244563149 3 COL6A1|COLLAGEN_VI 0.0310351029298875 0.201378940527778 0.112429052123366 3 EGFR|EGFR_PY1173 0.000214487604630667 0.200516399315492 0.00347098516000912 3 MRE11A|MRE11 0.00215804827064886 0.189892750648826 0.0147980452844493 3 WWTR1|TAZ 0.00151442746672954 0.189272405866531 0.0126421771135683 3 ERRFI1|MIG-6 0.0326128854208468 0.165363731684056 0.115956925940789 3 STK11|LKB1 0.00168041839282631 0.164519893426603 0.0129056132569061 3 MET|C-MET_PY1235 0.0012799598474618 0.159038341360659 0.0111705586687575 3 CHEK2|CHK2_PT68 0.00808922194500519 0.151569280217931 0.0386720510477948 3 SMAD3|SMAD3 0.00500626413145356 0.151097213302846 0.0267000753677523 3 CDH2|N-CADHERIN 0.00375054691332673 0.141579801194444 0.0240035002452911 3 ARHI|ARHI 0.00466486888111185 0.140312925974932 0.0263427889756905 3 RAB11A RAB11B|RAB11 0.0254571281883666 0.126683571787037 0.0951216783137886 3 YWHAE|14-3-3_EPSILON 0.0257621212099844 0.126475275342593 0.0951216783137886 3 CLDN7|CLAUDIN-7 0.0233450716909431 0.116685284595528 0.0914745666257362 3 CDKN1B|P27_PT157 0.00483562027992623 0.112892617979449 0.026526831249881 3 BIRC2 |CIAP 0.00825809423416452 0.106952480482611 0.0386720510477948 3 PGR|PR 0.00419652164836195 0.100200497061653 0.0259913598866289 3 CDKN1B|P27_PT198 0.0230607898826474 0.0857016186696025 0.0914745666257362 3 CCNE2|CYCLIN_E2 0.0417857606357698 0.0789035539658988 0.143265465036925 3 MS4A1|CD20 0.0153724128589522 0.0786784071637308 0.067079619748155 3 SCD1|SCD1 0.00198571012218495 -0.114212701216576 0.0141206053133152 3 TSC2|TUBERIN_PT1462 0.0228612134297135 -0.137090341662827 0.0914745666257362 3 EGFR|EGFR_PY1068 0.0385026154497209 -0.143402552464092 0.134409130297208 3 FOXO3|FOXO3A_PS318_S321 0.00461922918444974 -0.165114699588753 0.0263427889756905 3 BAD|BAD_PS112 0.00236145921331247 -0.1731056632771 0.0156344885846895 3 PIK3CA |PI3K-P110-ALPHA 0.00614494381025643 -0.181875376008808 0.0310481371465588 3 PRKCD|PKC-DELTA_PS664 0.000282752295350271 -0.183367716357498 0.00417603390055785 3 CTNNB1|ALPHA-CATENIN 0.000344394388866817 -0.210727951015131 0.00433970840832098 3 MAPK1 MAPK3|MAPK_PT202_Y204 0.0231113757228397 -0.218337913567977 0.0914745666257362 3 JUN|C-JUN_PS73 3.38022637190465e-05 -0.288046953226513 0.00108167243900949 3 MAPK14|P38 0.00652903921837726 -0.3050206908986 0.0321429623058573 3 BECN1|BECLIN 3.45933486951654e-06 -0.32178858194738 0.000132838458989435 3 SRC|SRC_PY527 0.00183336966280264 -0.402940391478546 0.0135387298176195 3 PKC|PKC-PAN_BETAII_PS660 0.00072344057530976 -0.405677185154246 0.00771669946997077 3 ACACA ACACB|ACC_PS79 0.000782593349401076 -0.413513003828139 0.00790831174131614 3 GSK3A GSK3B|GSK3-ALPHA-BETA_PS21_S9 5.45308348737831e-05 -0.420614284038618 0.00130874003697079 3 AKT1 AKT2 AKT3|AKT_PT308 0.000361642367360082 -0.44928888996093 0.00433970840832098 3 RICTOR|RICTOR 0.000920740286129661 -0.53766091859056 0.00883910674684475 3 YAP1|YAP_PS127 0.000307535836846654 -0.578605921364724 0.00421763433389697 3 CHEK2|CHK2 6.42021116032766e-08 -0.589138477753162 1.23268054278291e-05 3 AKT1 AKT2 AKT3|AKT_PS473 0.00101453676066598 -0.606663653031391 0.0092757646689461 3 MAPK14|P38_PT180_Y182 7.03734278585037e-05 -0.625750809104562 0.00150129979431475 3 EIF4EBP1|4E-BP1_PT37_T46 0.0145761200539477 -0.635193688100045 0.0650840709385572 3 PDCD4|PDCD4 0.00021693657250057 -0.644420685980804 0.00347098516000912 3 GSK3A GSK3B|GSK3_PS9 7.57288259487717e-07 -0.6454962749528 3.88426456966488e-05 3 CAV1|CAVEOLIN-1 0.00042889498318987 -0.79048374220664 0.00484399039837971 3 CDKN1A|P21 7.06333365786871e-07 -1.30391531070709 3.88426456966488e-05 3 MYH11|MYH11 4.07641747580534e-05 -1.36037403933853 0.00111810307907804 3 SFRS1|SF2 8.0922178534685e-07 -1.57132136182362 3.88426456966488e-05 3