This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 58 focal events and 12 molecular subtypes across 165 patients, 98 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q21.3 cnv correlated to 'CN_CNMF'.
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amp_1q32.1 cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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amp_6p21.1 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_8p11.23 cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_8p11.21 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_8q24.21 cnv correlated to 'CN_CNMF'.
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amp_11p15.5 cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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amp_11q13.3 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_12p12.1 cnv correlated to 'RPPA_CNMF'.
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amp_13q12.13 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_13q12.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_13q22.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_16p11.2 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_17q12 cnv correlated to 'CN_CNMF'.
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amp_17q24.1 cnv correlated to 'CN_CNMF'.
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amp_20q11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_20q11.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_20q13.33 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_xq27.3 cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.11 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_1p33 cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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del_1p13.2 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_2p12 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_3q26.31 cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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del_4p13 cnv correlated to 'CN_CNMF'.
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del_4q22.1 cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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del_4q35.1 cnv correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
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del_5q12.1 cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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del_5q22.2 cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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del_7q31.1 cnv correlated to 'CN_CNMF'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_8q11.1 cnv correlated to 'CN_CNMF'.
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del_10q25.2 cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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del_11q22.3 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_14q11.2 cnv correlated to 'CN_CNMF'.
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del_14q31.1 cnv correlated to 'CN_CNMF'.
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del_15q21.1 cnv correlated to 'CN_CNMF'.
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del_15q22.33 cnv correlated to 'CN_CNMF'.
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del_16q23.1 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_17p11.2 cnv correlated to 'CN_CNMF'.
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del_18p11.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q21.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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del_22q13.31 cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xp22.33 cnv correlated to 'METHLYATION_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 13q12 13 | 126 (76%) | 39 |
0.279 (0.592) |
0.182 (0.506) |
1e-05 (0.000535) |
0.104 (0.413) |
0.399 (0.681) |
0.12 (0.43) |
0.00675 (0.0839) |
1e-05 (0.000535) |
0.00033 (0.00763) |
0.00414 (0.0605) |
1 (1.00) |
1 (1.00) |
amp 13q12 2 | 125 (76%) | 40 |
0.404 (0.683) |
0.285 (0.592) |
3e-05 (0.0011) |
0.0459 (0.288) |
0.456 (0.719) |
0.0888 (0.396) |
0.00358 (0.0579) |
0.0001 (0.0029) |
0.00651 (0.0824) |
0.0215 (0.178) |
1 (1.00) |
1 (1.00) |
amp 13q22 1 | 120 (73%) | 45 |
0.255 (0.581) |
0.0521 (0.305) |
1e-05 (0.000535) |
0.111 (0.415) |
0.485 (0.749) |
0.274 (0.592) |
0.00378 (0.0585) |
3e-05 (0.0011) |
0.0249 (0.201) |
0.0108 (0.118) |
1 (1.00) |
0.829 (0.943) |
del 11q22 3 | 38 (23%) | 127 |
0.00157 (0.028) |
0.0422 (0.274) |
6e-05 (0.00199) |
0.193 (0.52) |
0.852 (0.95) |
0.388 (0.675) |
0.00541 (0.0738) |
0.0077 (0.094) |
0.291 (0.595) |
0.966 (1.00) |
0.28 (0.592) |
0.221 (0.538) |
del 18q22 1 | 141 (85%) | 24 |
0.108 (0.415) |
0.119 (0.428) |
1e-05 (0.000535) |
0.0129 (0.129) |
0.911 (0.98) |
0.169 (0.491) |
0.028 (0.219) |
0.0116 (0.12) |
0.112 (0.415) |
0.297 (0.601) |
0.635 (0.834) |
0.879 (0.963) |
amp 6p21 1 | 54 (33%) | 111 |
0.0125 (0.128) |
0.135 (0.45) |
0.00034 (0.00763) |
0.495 (0.752) |
0.182 (0.506) |
0.0341 (0.244) |
0.657 (0.849) |
0.145 (0.465) |
0.225 (0.541) |
0.389 (0.675) |
0.498 (0.752) |
0.403 (0.683) |
amp 8p11 23 | 53 (32%) | 112 |
0.0728 (0.361) |
0.282 (0.592) |
1e-05 (0.000535) |
0.16 (0.482) |
0.473 (0.735) |
0.148 (0.467) |
0.112 (0.415) |
0.0724 (0.361) |
0.0185 (0.17) |
0.0274 (0.217) |
0.933 (0.983) |
0.133 (0.45) |
amp 11q13 3 | 28 (17%) | 137 |
0.0738 (0.362) |
0.208 (0.538) |
0.0356 (0.251) |
0.0267 (0.213) |
0.929 (0.98) |
0.288 (0.592) |
0.00411 (0.0605) |
0.0112 (0.118) |
0.0807 (0.384) |
0.34 (0.635) |
0.0438 (0.277) |
0.125 (0.441) |
amp 20q11 21 | 146 (88%) | 19 |
0.127 (0.441) |
0.165 (0.486) |
5e-05 (0.00174) |
0.00507 (0.0706) |
0.0376 (0.261) |
0.243 (0.568) |
0.155 (0.478) |
0.00027 (0.00648) |
0.333 (0.629) |
0.397 (0.679) |
0.328 (0.625) |
0.432 (0.711) |
amp 20q11 23 | 147 (89%) | 18 |
0.127 (0.441) |
0.167 (0.486) |
8e-05 (0.00242) |
0.0232 (0.19) |
0.0379 (0.261) |
0.245 (0.57) |
0.213 (0.538) |
0.00021 (0.00522) |
0.177 (0.503) |
0.278 (0.592) |
0.501 (0.752) |
0.692 (0.872) |
del 8p23 2 | 100 (61%) | 65 |
0.187 (0.516) |
0.0621 (0.332) |
1e-05 (0.000535) |
0.439 (0.714) |
0.915 (0.98) |
0.774 (0.915) |
0.00145 (0.0266) |
0.00973 (0.111) |
0.647 (0.842) |
0.329 (0.625) |
0.452 (0.719) |
0.525 (0.77) |
del 18p11 31 | 125 (76%) | 40 |
0.0608 (0.328) |
0.502 (0.752) |
1e-05 (0.000535) |
0.00931 (0.11) |
0.261 (0.582) |
0.326 (0.625) |
0.0471 (0.29) |
0.0057 (0.075) |
0.189 (0.516) |
0.222 (0.538) |
0.8 (0.925) |
0.349 (0.639) |
del 18q21 2 | 145 (88%) | 20 |
0.132 (0.45) |
0.407 (0.683) |
1e-05 (0.000535) |
0.0522 (0.305) |
1 (1.00) |
0.0864 (0.39) |
0.00603 (0.0777) |
0.0297 (0.227) |
0.223 (0.538) |
0.124 (0.441) |
0.892 (0.972) |
0.698 (0.872) |
del 18q23 | 141 (85%) | 24 |
0.336 (0.632) |
0.256 (0.582) |
1e-05 (0.000535) |
0.053 (0.305) |
0.792 (0.919) |
0.149 (0.467) |
0.0322 (0.241) |
0.0293 (0.227) |
0.155 (0.478) |
0.532 (0.773) |
0.635 (0.834) |
0.88 (0.963) |
amp 1q32 1 | 49 (30%) | 116 |
0.1 (0.413) |
0.528 (0.771) |
0.00204 (0.0355) |
0.217 (0.538) |
0.0206 (0.178) |
0.16 (0.482) |
0.658 (0.849) |
0.898 (0.973) |
0.637 (0.834) |
0.769 (0.912) |
0.5 (0.752) |
0.247 (0.57) |
amp 8p11 21 | 70 (42%) | 95 |
0.042 (0.274) |
0.212 (0.538) |
1e-05 (0.000535) |
0.0207 (0.178) |
0.396 (0.679) |
0.705 (0.874) |
0.455 (0.719) |
0.126 (0.441) |
0.0429 (0.276) |
0.275 (0.592) |
0.214 (0.538) |
0.199 (0.531) |
amp 16p11 2 | 47 (28%) | 118 |
0.487 (0.749) |
0.528 (0.771) |
1e-05 (0.000535) |
0.0085 (0.102) |
0.475 (0.737) |
0.27 (0.589) |
0.0415 (0.274) |
0.159 (0.482) |
0.208 (0.538) |
0.851 (0.95) |
0.364 (0.652) |
0.939 (0.984) |
amp 20q13 33 | 146 (88%) | 19 |
0.199 (0.531) |
0.211 (0.538) |
0.00012 (0.00321) |
0.0793 (0.383) |
0.105 (0.413) |
0.465 (0.726) |
0.612 (0.819) |
0.00066 (0.0135) |
0.33 (0.627) |
0.395 (0.679) |
0.176 (0.503) |
0.697 (0.872) |
amp xq27 3 | 37 (22%) | 128 |
0.746 (0.893) |
0.441 (0.714) |
0.102 (0.413) |
0.0343 (0.244) |
0.0714 (0.361) |
0.513 (0.76) |
0.0404 (0.273) |
0.238 (0.564) |
0.216 (0.538) |
0.277 (0.592) |
0.0961 (0.409) |
0.0196 (0.175) |
del 1p36 11 | 75 (45%) | 90 |
0.3 (0.602) |
0.07 (0.361) |
0.0163 (0.153) |
0.13 (0.449) |
0.587 (0.806) |
0.791 (0.919) |
0.192 (0.52) |
0.0146 (0.14) |
0.77 (0.912) |
0.0637 (0.336) |
0.736 (0.888) |
0.791 (0.919) |
del 1p33 | 53 (32%) | 112 |
0.367 (0.656) |
0.0146 (0.14) |
0.00013 (0.00335) |
0.112 (0.415) |
0.299 (0.601) |
0.264 (0.582) |
0.311 (0.615) |
0.186 (0.515) |
0.563 (0.791) |
0.266 (0.582) |
0.924 (0.98) |
0.44 (0.714) |
del 1p13 2 | 54 (33%) | 111 |
0.776 (0.915) |
0.0527 (0.305) |
0.00104 (0.0207) |
0.0821 (0.384) |
0.544 (0.782) |
0.582 (0.802) |
0.489 (0.749) |
0.0195 (0.175) |
0.312 (0.615) |
0.214 (0.538) |
0.582 (0.802) |
0.693 (0.872) |
del 2p12 | 13 (8%) | 152 |
0.0146 (0.14) |
0.672 (0.861) |
0.021 (0.178) |
1 (1.00) |
0.277 (0.592) |
0.38 (0.668) |
0.716 (0.876) |
0.141 (0.461) |
0.104 (0.413) |
0.145 (0.465) |
||
del 3q26 31 | 18 (11%) | 147 |
0.55 (0.783) |
0.928 (0.98) |
0.321 (0.621) |
0.0211 (0.178) |
0.36 (0.652) |
0.611 (0.819) |
0.562 (0.791) |
0.432 (0.711) |
0.551 (0.783) |
0.0343 (0.244) |
0.63 (0.833) |
0.612 (0.819) |
del 4q22 1 | 73 (44%) | 92 |
0.551 (0.783) |
0.0329 (0.244) |
7e-05 (0.00221) |
0.78 (0.917) |
0.109 (0.415) |
0.0829 (0.385) |
0.388 (0.675) |
0.318 (0.617) |
0.833 (0.945) |
0.257 (0.582) |
0.684 (0.872) |
0.674 (0.862) |
del 4q35 1 | 72 (44%) | 93 |
0.462 (0.724) |
0.106 (0.413) |
1e-05 (0.000535) |
0.912 (0.98) |
0.282 (0.592) |
0.013 (0.129) |
0.603 (0.815) |
0.049 (0.299) |
0.292 (0.595) |
0.0503 (0.304) |
0.571 (0.793) |
0.863 (0.956) |
del 5q12 1 | 53 (32%) | 112 |
0.111 (0.415) |
0.00431 (0.0612) |
0.00123 (0.0235) |
0.0861 (0.39) |
0.446 (0.714) |
0.712 (0.874) |
0.582 (0.802) |
0.0935 (0.405) |
0.23 (0.551) |
0.288 (0.592) |
0.159 (0.482) |
0.119 (0.428) |
del 5q22 2 | 59 (36%) | 106 |
0.161 (0.482) |
0.00125 (0.0235) |
0.00965 (0.111) |
0.338 (0.634) |
0.389 (0.675) |
0.894 (0.972) |
0.733 (0.887) |
0.188 (0.516) |
0.513 (0.76) |
0.239 (0.564) |
0.0403 (0.273) |
0.0963 (0.409) |
del 16q23 1 | 23 (14%) | 142 |
0.0214 (0.178) |
0.524 (0.769) |
0.0037 (0.0585) |
0.599 (0.814) |
0.448 (0.714) |
0.501 (0.752) |
0.422 (0.703) |
0.739 (0.889) |
1 (1.00) |
0.844 (0.948) |
0.809 (0.933) |
0.925 (0.98) |
amp 1q21 3 | 48 (29%) | 117 |
0.0513 (0.305) |
0.316 (0.617) |
0.0112 (0.118) |
0.146 (0.466) |
0.202 (0.534) |
0.405 (0.683) |
0.418 (0.698) |
0.397 (0.679) |
0.571 (0.793) |
0.15 (0.468) |
0.922 (0.98) |
0.356 (0.648) |
amp 8q24 21 | 109 (66%) | 56 |
0.0432 (0.276) |
0.26 (0.582) |
1e-05 (0.000535) |
0.054 (0.306) |
0.937 (0.984) |
0.69 (0.872) |
0.167 (0.486) |
0.047 (0.29) |
0.26 (0.582) |
0.263 (0.582) |
0.0732 (0.361) |
0.447 (0.714) |
amp 11p15 5 | 45 (27%) | 120 |
0.785 (0.918) |
0.135 (0.45) |
0.138 (0.456) |
0.0975 (0.409) |
0.71 (0.874) |
0.789 (0.919) |
0.125 (0.441) |
0.00358 (0.0579) |
0.242 (0.567) |
0.538 (0.775) |
0.506 (0.755) |
0.363 (0.652) |
amp 12p12 1 | 40 (24%) | 125 |
0.447 (0.714) |
0.136 (0.45) |
0.0627 (0.333) |
0.104 (0.413) |
0.0175 (0.162) |
0.515 (0.76) |
0.424 (0.703) |
0.368 (0.657) |
1 (1.00) |
0.76 (0.904) |
0.427 (0.707) |
0.215 (0.538) |
amp 17q12 | 46 (28%) | 119 |
0.317 (0.617) |
0.0798 (0.383) |
0.00417 (0.0605) |
0.284 (0.592) |
0.309 (0.614) |
0.0552 (0.31) |
0.439 (0.714) |
0.0688 (0.358) |
0.587 (0.806) |
0.597 (0.813) |
0.118 (0.428) |
0.562 (0.791) |
amp 17q24 1 | 39 (24%) | 126 |
0.723 (0.879) |
0.74 (0.89) |
0.00056 (0.0118) |
0.0577 (0.316) |
0.669 (0.859) |
0.247 (0.57) |
0.316 (0.617) |
0.1 (0.413) |
0.659 (0.849) |
0.21 (0.538) |
0.374 (0.664) |
0.825 (0.942) |
del 4p13 | 60 (36%) | 105 |
0.546 (0.782) |
0.0791 (0.383) |
3e-05 (0.0011) |
0.617 (0.822) |
0.311 (0.615) |
0.221 (0.538) |
0.875 (0.962) |
0.343 (0.635) |
0.721 (0.878) |
0.219 (0.538) |
0.182 (0.506) |
0.49 (0.749) |
del 7q31 1 | 4 (2%) | 161 |
0.0343 (0.244) |
0.85 (0.95) |
0.643 (0.838) |
0.177 (0.503) |
0.771 (0.912) |
1 (1.00) |
1 (1.00) |
|||||
del 8q11 1 | 17 (10%) | 148 |
0.691 (0.872) |
0.283 (0.592) |
0.01 (0.113) |
0.081 (0.384) |
0.924 (0.98) |
0.709 (0.874) |
0.643 (0.838) |
0.102 (0.413) |
0.208 (0.538) |
0.0866 (0.39) |
0.328 (0.625) |
0.565 (0.791) |
del 10q25 2 | 48 (29%) | 117 |
0.402 (0.683) |
0.566 (0.791) |
0.162 (0.482) |
0.323 (0.622) |
0.603 (0.815) |
0.745 (0.893) |
0.206 (0.538) |
0.0318 (0.24) |
0.709 (0.874) |
0.277 (0.592) |
0.429 (0.709) |
0.565 (0.791) |
del 14q11 2 | 70 (42%) | 95 |
0.458 (0.72) |
0.0926 (0.405) |
2e-05 (0.000928) |
0.345 (0.635) |
0.918 (0.98) |
0.546 (0.782) |
0.298 (0.601) |
0.0982 (0.409) |
0.0726 (0.361) |
0.342 (0.635) |
0.604 (0.815) |
0.952 (0.995) |
del 14q31 1 | 72 (44%) | 93 |
0.458 (0.72) |
0.106 (0.414) |
2e-05 (0.000928) |
0.303 (0.605) |
0.97 (1.00) |
0.59 (0.806) |
0.218 (0.538) |
0.0971 (0.409) |
0.407 (0.683) |
0.238 (0.564) |
0.453 (0.719) |
0.904 (0.977) |
del 15q21 1 | 79 (48%) | 86 |
0.0575 (0.316) |
0.145 (0.465) |
0.00012 (0.00321) |
0.817 (0.938) |
0.0936 (0.405) |
0.757 (0.903) |
0.38 (0.668) |
0.414 (0.692) |
0.433 (0.712) |
0.435 (0.713) |
0.346 (0.636) |
0.551 (0.783) |
del 15q22 33 | 77 (47%) | 88 |
0.072 (0.361) |
0.194 (0.522) |
3e-05 (0.0011) |
0.381 (0.668) |
0.134 (0.45) |
0.252 (0.578) |
0.341 (0.635) |
0.101 (0.413) |
0.854 (0.951) |
0.744 (0.893) |
0.678 (0.866) |
0.445 (0.714) |
del 17p11 2 | 113 (68%) | 52 |
0.0566 (0.315) |
0.819 (0.938) |
0.00229 (0.0389) |
0.636 (0.834) |
0.708 (0.874) |
0.289 (0.592) |
0.225 (0.541) |
0.218 (0.538) |
0.718 (0.876) |
0.354 (0.645) |
0.888 (0.969) |
0.924 (0.98) |
del 19p13 3 | 36 (22%) | 129 |
0.988 (1.00) |
0.819 (0.938) |
0.139 (0.456) |
0.164 (0.485) |
0.728 (0.882) |
0.81 (0.933) |
0.874 (0.962) |
0.914 (0.98) |
0.495 (0.752) |
0.00571 (0.075) |
0.47 (0.731) |
0.521 (0.766) |
del 22q13 31 | 68 (41%) | 97 |
0.689 (0.872) |
0.339 (0.634) |
0.0409 (0.274) |
0.917 (0.98) |
0.293 (0.596) |
0.393 (0.679) |
0.594 (0.811) |
0.272 (0.591) |
0.215 (0.538) |
0.113 (0.415) |
0.0982 (0.409) |
0.011 (0.118) |
del xp22 33 | 34 (21%) | 131 |
0.959 (0.998) |
0.871 (0.961) |
0.266 (0.582) |
0.00041 (0.00892) |
0.847 (0.949) |
0.876 (0.962) |
0.984 (1.00) |
0.531 (0.773) |
0.663 (0.854) |
1 (1.00) |
0.777 (0.915) |
0.716 (0.876) |
amp 10q22 2 | 11 (7%) | 154 |
0.844 (0.948) |
0.838 (0.948) |
0.372 (0.663) |
0.653 (0.848) |
0.783 (0.918) |
0.936 (0.984) |
0.204 (0.536) |
0.0903 (0.398) |
0.181 (0.506) |
0.19 (0.516) |
||
amp 12p13 33 | 41 (25%) | 124 |
0.21 (0.538) |
0.136 (0.45) |
0.112 (0.415) |
0.246 (0.57) |
0.0541 (0.306) |
0.625 (0.83) |
0.533 (0.773) |
0.486 (0.749) |
0.844 (0.948) |
0.816 (0.938) |
0.285 (0.592) |
0.148 (0.467) |
amp xp22 2 | 32 (19%) | 133 |
0.167 (0.486) |
0.507 (0.755) |
0.7 (0.873) |
0.354 (0.645) |
0.403 (0.683) |
0.379 (0.668) |
0.436 (0.713) |
0.629 (0.833) |
0.692 (0.872) |
0.869 (0.961) |
0.318 (0.617) |
0.84 (0.948) |
del 3p14 2 | 31 (19%) | 134 |
0.943 (0.987) |
0.966 (1.00) |
0.838 (0.948) |
0.0892 (0.396) |
0.172 (0.495) |
0.294 (0.596) |
0.556 (0.788) |
0.862 (0.956) |
0.923 (0.98) |
0.961 (0.998) |
0.261 (0.582) |
0.16 (0.482) |
del 6p25 3 | 24 (15%) | 141 |
0.448 (0.714) |
0.632 (0.834) |
0.895 (0.972) |
0.119 (0.428) |
0.576 (0.799) |
0.445 (0.714) |
0.881 (0.963) |
0.697 (0.872) |
0.829 (0.943) |
0.784 (0.918) |
0.633 (0.834) |
0.613 (0.819) |
del 6q26 | 30 (18%) | 135 |
0.17 (0.491) |
0.955 (0.997) |
0.181 (0.506) |
0.611 (0.819) |
0.0531 (0.305) |
0.148 (0.467) |
0.202 (0.534) |
0.324 (0.623) |
0.0868 (0.39) |
0.333 (0.629) |
0.0668 (0.35) |
0.84 (0.948) |
del 10q21 1 | 41 (25%) | 124 |
0.105 (0.413) |
0.565 (0.791) |
0.0862 (0.39) |
0.142 (0.461) |
0.241 (0.566) |
0.204 (0.536) |
0.222 (0.538) |
0.537 (0.775) |
0.393 (0.679) |
0.189 (0.516) |
0.928 (0.98) |
0.695 (0.872) |
del 12q13 2 | 20 (12%) | 145 |
0.314 (0.617) |
0.872 (0.961) |
0.26 (0.582) |
0.489 (0.749) |
0.36 (0.652) |
0.515 (0.76) |
0.589 (0.806) |
0.799 (0.925) |
0.71 (0.874) |
0.788 (0.919) |
0.512 (0.76) |
0.569 (0.793) |
del 16p13 3 | 14 (8%) | 151 |
0.162 (0.482) |
0.736 (0.888) |
0.265 (0.582) |
0.134 (0.45) |
0.501 (0.752) |
0.691 (0.872) |
0.239 (0.564) |
0.928 (0.98) |
0.155 (0.478) |
0.463 (0.724) |
0.654 (0.848) |
0.535 (0.774) |
del 20p12 1 | 49 (30%) | 116 |
0.825 (0.942) |
0.302 (0.605) |
0.113 (0.415) |
0.96 (0.998) |
0.903 (0.977) |
0.862 (0.956) |
0.362 (0.652) |
0.375 (0.664) |
0.702 (0.874) |
0.253 (0.579) |
0.603 (0.815) |
0.265 (0.582) |
del 21q11 2 | 73 (44%) | 92 |
0.618 (0.823) |
0.108 (0.415) |
0.0603 (0.328) |
0.758 (0.903) |
0.344 (0.635) |
0.503 (0.753) |
0.5 (0.752) |
0.709 (0.874) |
0.0822 (0.384) |
0.726 (0.882) |
0.28 (0.592) |
0.287 (0.592) |
P value = 0.0112 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 1(1Q21.3) MUTATED | 11 | 8 | 12 | 14 | 3 |
AMP PEAK 1(1Q21.3) WILD-TYPE | 15 | 32 | 15 | 28 | 27 |
P value = 0.00204 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 2(1Q32.1) MUTATED | 11 | 8 | 11 | 17 | 2 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 15 | 32 | 16 | 25 | 28 |
P value = 0.0206 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 42 | 27 | 25 | 30 | 3 |
AMP PEAK 2(1Q32.1) MUTATED | 18 | 9 | 2 | 11 | 0 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 24 | 18 | 23 | 19 | 3 |
P value = 0.0125 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 13 | 8 | 20 | 13 | 15 |
AMP PEAK 3(6P21.1) MUTATED | 0 | 3 | 4 | 7 | 6 |
AMP PEAK 3(6P21.1) WILD-TYPE | 13 | 5 | 16 | 6 | 9 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 3(6P21.1) MUTATED | 11 | 16 | 15 | 10 | 2 |
AMP PEAK 3(6P21.1) WILD-TYPE | 15 | 24 | 12 | 32 | 28 |
P value = 0.0341 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 20 | 20 | 24 | 18 | 29 | 16 |
AMP PEAK 3(6P21.1) MUTATED | 8 | 5 | 5 | 9 | 5 | 9 |
AMP PEAK 3(6P21.1) WILD-TYPE | 12 | 15 | 19 | 9 | 24 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 4(8P11.23) MUTATED | 4 | 19 | 7 | 23 | 0 |
AMP PEAK 4(8P11.23) WILD-TYPE | 22 | 21 | 20 | 19 | 30 |
P value = 0.0185 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 24 | 55 | 62 |
AMP PEAK 4(8P11.23) MUTATED | 8 | 25 | 13 |
AMP PEAK 4(8P11.23) WILD-TYPE | 16 | 30 | 49 |
P value = 0.0274 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 63 | 56 |
AMP PEAK 4(8P11.23) MUTATED | 9 | 26 | 11 |
AMP PEAK 4(8P11.23) WILD-TYPE | 13 | 37 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 5(8P11.21) MUTATED | 9 | 19 | 9 | 32 | 1 |
AMP PEAK 5(8P11.21) WILD-TYPE | 17 | 21 | 18 | 10 | 29 |
P value = 0.0207 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
AMP PEAK 5(8P11.21) MUTATED | 6 | 6 | 10 | 10 | 13 |
AMP PEAK 5(8P11.21) WILD-TYPE | 8 | 17 | 7 | 15 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 6(8Q24.21) MUTATED | 20 | 32 | 13 | 40 | 4 |
AMP PEAK 6(8Q24.21) WILD-TYPE | 6 | 8 | 14 | 2 | 26 |
P value = 0.00358 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 8(11P15.5) MUTATED | 7 | 8 | 2 | 10 | 14 | 2 | 1 |
AMP PEAK 8(11P15.5) WILD-TYPE | 20 | 28 | 10 | 9 | 18 | 16 | 19 |
P value = 0.0267 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
AMP PEAK 9(11Q13.3) MUTATED | 2 | 3 | 8 | 2 | 5 |
AMP PEAK 9(11Q13.3) WILD-TYPE | 12 | 20 | 9 | 23 | 12 |
P value = 0.00411 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
AMP PEAK 9(11Q13.3) MUTATED | 9 | 2 | 0 | 8 | 9 |
AMP PEAK 9(11Q13.3) WILD-TYPE | 23 | 12 | 33 | 20 | 48 |
P value = 0.0112 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 9(11Q13.3) MUTATED | 8 | 2 | 2 | 7 | 7 | 1 | 1 |
AMP PEAK 9(11Q13.3) WILD-TYPE | 19 | 34 | 10 | 12 | 25 | 17 | 19 |
P value = 0.0175 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 42 | 27 | 25 | 30 | 3 |
AMP PEAK 11(12P12.1) MUTATED | 11 | 3 | 11 | 3 | 0 |
AMP PEAK 11(12P12.1) WILD-TYPE | 31 | 24 | 14 | 27 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 12(13Q12.13) MUTATED | 20 | 35 | 27 | 30 | 14 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 6 | 5 | 0 | 12 | 16 |
P value = 0.00675 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
AMP PEAK 12(13Q12.13) MUTATED | 26 | 12 | 20 | 27 | 40 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 6 | 2 | 13 | 1 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 12(13Q12.13) MUTATED | 26 | 29 | 7 | 18 | 26 | 5 | 14 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 1 | 7 | 5 | 1 | 6 | 13 | 6 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 24 | 55 | 62 |
AMP PEAK 12(13Q12.13) MUTATED | 19 | 51 | 39 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 5 | 4 | 23 |
P value = 0.00414 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 63 | 56 |
AMP PEAK 12(13Q12.13) MUTATED | 19 | 55 | 35 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 3 | 8 | 21 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 13(13Q12.2) MUTATED | 18 | 35 | 27 | 31 | 14 |
AMP PEAK 13(13Q12.2) WILD-TYPE | 8 | 5 | 0 | 11 | 16 |
P value = 0.00358 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
AMP PEAK 13(13Q12.2) MUTATED | 26 | 12 | 19 | 27 | 40 |
AMP PEAK 13(13Q12.2) WILD-TYPE | 6 | 2 | 14 | 1 | 17 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 13(13Q12.2) MUTATED | 26 | 28 | 7 | 17 | 26 | 6 | 14 |
AMP PEAK 13(13Q12.2) WILD-TYPE | 1 | 8 | 5 | 2 | 6 | 12 | 6 |
P value = 0.00651 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 24 | 55 | 62 |
AMP PEAK 13(13Q12.2) MUTATED | 19 | 49 | 40 |
AMP PEAK 13(13Q12.2) WILD-TYPE | 5 | 6 | 22 |
P value = 0.0215 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 63 | 56 |
AMP PEAK 13(13Q12.2) MUTATED | 19 | 53 | 36 |
AMP PEAK 13(13Q12.2) WILD-TYPE | 3 | 10 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 14(13Q22.1) MUTATED | 18 | 34 | 27 | 29 | 12 |
AMP PEAK 14(13Q22.1) WILD-TYPE | 8 | 6 | 0 | 13 | 18 |
P value = 0.00378 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
AMP PEAK 14(13Q22.1) MUTATED | 23 | 11 | 18 | 27 | 40 |
AMP PEAK 14(13Q22.1) WILD-TYPE | 9 | 3 | 15 | 1 | 17 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 14(13Q22.1) MUTATED | 23 | 26 | 8 | 17 | 28 | 4 | 13 |
AMP PEAK 14(13Q22.1) WILD-TYPE | 4 | 10 | 4 | 2 | 4 | 14 | 7 |
P value = 0.0249 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 24 | 55 | 62 |
AMP PEAK 14(13Q22.1) MUTATED | 20 | 46 | 39 |
AMP PEAK 14(13Q22.1) WILD-TYPE | 4 | 9 | 23 |
P value = 0.0108 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 63 | 56 |
AMP PEAK 14(13Q22.1) MUTATED | 18 | 53 | 34 |
AMP PEAK 14(13Q22.1) WILD-TYPE | 4 | 10 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 15(16P11.2) MUTATED | 4 | 20 | 13 | 9 | 1 |
AMP PEAK 15(16P11.2) WILD-TYPE | 22 | 20 | 14 | 33 | 29 |
P value = 0.0085 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
AMP PEAK 15(16P11.2) MUTATED | 1 | 5 | 11 | 7 | 4 |
AMP PEAK 15(16P11.2) WILD-TYPE | 13 | 18 | 6 | 18 | 13 |
P value = 0.00417 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 16(17Q12) MUTATED | 5 | 21 | 4 | 10 | 6 |
AMP PEAK 16(17Q12) WILD-TYPE | 21 | 19 | 23 | 32 | 24 |
P value = 0.00056 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 17(17Q24.1) MUTATED | 6 | 19 | 1 | 7 | 6 |
AMP PEAK 17(17Q24.1) WILD-TYPE | 20 | 21 | 26 | 35 | 24 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 18(20Q11.21) MUTATED | 23 | 40 | 27 | 36 | 20 |
AMP PEAK 18(20Q11.21) WILD-TYPE | 3 | 0 | 0 | 6 | 10 |
P value = 0.00507 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
AMP PEAK 18(20Q11.21) MUTATED | 9 | 22 | 17 | 22 | 17 |
AMP PEAK 18(20Q11.21) WILD-TYPE | 5 | 1 | 0 | 3 | 0 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 18(20Q11.21) MUTATED | 26 | 32 | 9 | 19 | 31 | 10 | 18 |
AMP PEAK 18(20Q11.21) WILD-TYPE | 1 | 4 | 3 | 0 | 1 | 8 | 2 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 19(20Q11.23) MUTATED | 24 | 40 | 27 | 36 | 20 |
AMP PEAK 19(20Q11.23) WILD-TYPE | 2 | 0 | 0 | 6 | 10 |
P value = 0.0232 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
AMP PEAK 19(20Q11.23) MUTATED | 10 | 22 | 17 | 22 | 17 |
AMP PEAK 19(20Q11.23) WILD-TYPE | 4 | 1 | 0 | 3 | 0 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 19(20Q11.23) MUTATED | 26 | 33 | 9 | 19 | 31 | 10 | 18 |
AMP PEAK 19(20Q11.23) WILD-TYPE | 1 | 3 | 3 | 0 | 1 | 8 | 2 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
AMP PEAK 20(20Q13.33) MUTATED | 25 | 39 | 27 | 35 | 20 |
AMP PEAK 20(20Q13.33) WILD-TYPE | 1 | 1 | 0 | 7 | 10 |
P value = 0.00066 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
AMP PEAK 20(20Q13.33) MUTATED | 26 | 33 | 9 | 18 | 31 | 10 | 18 |
AMP PEAK 20(20Q13.33) WILD-TYPE | 1 | 3 | 3 | 1 | 1 | 8 | 2 |
P value = 0.0343 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
AMP PEAK 22(XQ27.3) MUTATED | 1 | 3 | 6 | 1 | 5 |
AMP PEAK 22(XQ27.3) WILD-TYPE | 13 | 20 | 11 | 24 | 12 |
P value = 0.0196 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 6 | 5 |
AMP PEAK 22(XQ27.3) MUTATED | 1 | 4 | 0 | 0 | 2 |
AMP PEAK 22(XQ27.3) WILD-TYPE | 10 | 8 | 16 | 6 | 3 |
P value = 0.0163 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 1(1P36.11) MUTATED | 15 | 23 | 12 | 19 | 6 |
DEL PEAK 1(1P36.11) WILD-TYPE | 11 | 17 | 15 | 23 | 24 |
P value = 0.0146 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 1(1P36.11) MUTATED | 15 | 14 | 3 | 8 | 23 | 5 | 7 |
DEL PEAK 1(1P36.11) WILD-TYPE | 12 | 22 | 9 | 11 | 9 | 13 | 13 |
P value = 0.0146 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 6 | 10 | 7 | 9 | 9 | 8 | 9 | 8 | 3 |
DEL PEAK 2(1P33) MUTATED | 1 | 2 | 2 | 1 | 5 | 6 | 0 | 3 | 0 |
DEL PEAK 2(1P33) WILD-TYPE | 5 | 8 | 5 | 8 | 4 | 2 | 9 | 5 | 3 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 2(1P33) MUTATED | 10 | 20 | 11 | 11 | 1 |
DEL PEAK 2(1P33) WILD-TYPE | 16 | 20 | 16 | 31 | 29 |
P value = 0.00104 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 3(1P13.2) MUTATED | 9 | 17 | 11 | 16 | 1 |
DEL PEAK 3(1P13.2) WILD-TYPE | 17 | 23 | 16 | 26 | 29 |
P value = 0.0195 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 3(1P13.2) MUTATED | 16 | 7 | 3 | 8 | 12 | 3 | 5 |
DEL PEAK 3(1P13.2) WILD-TYPE | 11 | 29 | 9 | 11 | 20 | 15 | 15 |
P value = 0.0146 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 13 | 8 | 20 | 13 | 15 |
DEL PEAK 4(2P12) MUTATED | 2 | 3 | 0 | 4 | 1 |
DEL PEAK 4(2P12) WILD-TYPE | 11 | 5 | 20 | 9 | 14 |
P value = 0.021 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 4(2P12) MUTATED | 0 | 1 | 5 | 6 | 1 |
DEL PEAK 4(2P12) WILD-TYPE | 26 | 39 | 22 | 36 | 29 |
P value = 0.0211 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
DEL PEAK 6(3Q26.31) MUTATED | 5 | 1 | 0 | 3 | 1 |
DEL PEAK 6(3Q26.31) WILD-TYPE | 9 | 22 | 17 | 22 | 16 |
P value = 0.0343 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 63 | 56 |
DEL PEAK 6(3Q26.31) MUTATED | 6 | 5 | 4 |
DEL PEAK 6(3Q26.31) WILD-TYPE | 16 | 58 | 52 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 7(4P13) MUTATED | 13 | 15 | 17 | 14 | 1 |
DEL PEAK 7(4P13) WILD-TYPE | 13 | 25 | 10 | 28 | 29 |
P value = 0.0329 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 6 | 10 | 7 | 9 | 9 | 8 | 9 | 8 | 3 |
DEL PEAK 8(4Q22.1) MUTATED | 1 | 4 | 4 | 4 | 8 | 3 | 1 | 4 | 0 |
DEL PEAK 8(4Q22.1) WILD-TYPE | 5 | 6 | 3 | 5 | 1 | 5 | 8 | 4 | 3 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 8(4Q22.1) MUTATED | 14 | 20 | 19 | 17 | 3 |
DEL PEAK 8(4Q22.1) WILD-TYPE | 12 | 20 | 8 | 25 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 9(4Q35.1) MUTATED | 16 | 18 | 18 | 19 | 1 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 10 | 22 | 9 | 23 | 29 |
P value = 0.013 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 20 | 20 | 24 | 18 | 29 | 16 |
DEL PEAK 9(4Q35.1) MUTATED | 7 | 7 | 15 | 10 | 5 | 8 |
DEL PEAK 9(4Q35.1) WILD-TYPE | 13 | 13 | 9 | 8 | 24 | 8 |
P value = 0.00431 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 6 | 10 | 7 | 9 | 9 | 8 | 9 | 8 | 3 |
DEL PEAK 10(5Q12.1) MUTATED | 0 | 1 | 1 | 3 | 7 | 2 | 0 | 3 | 0 |
DEL PEAK 10(5Q12.1) WILD-TYPE | 6 | 9 | 6 | 6 | 2 | 6 | 9 | 5 | 3 |
P value = 0.00123 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 10(5Q12.1) MUTATED | 11 | 13 | 10 | 18 | 1 |
DEL PEAK 10(5Q12.1) WILD-TYPE | 15 | 27 | 17 | 24 | 29 |
P value = 0.00125 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 6 | 10 | 7 | 9 | 9 | 8 | 9 | 8 | 3 |
DEL PEAK 11(5Q22.2) MUTATED | 0 | 2 | 2 | 3 | 8 | 3 | 0 | 4 | 0 |
DEL PEAK 11(5Q22.2) WILD-TYPE | 6 | 8 | 5 | 6 | 1 | 5 | 9 | 4 | 3 |
P value = 0.00965 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 11(5Q22.2) MUTATED | 9 | 15 | 13 | 19 | 3 |
DEL PEAK 11(5Q22.2) WILD-TYPE | 17 | 25 | 14 | 23 | 27 |
P value = 0.0343 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 14(7Q31.1) MUTATED | 0 | 0 | 0 | 4 | 0 |
DEL PEAK 14(7Q31.1) WILD-TYPE | 26 | 40 | 27 | 38 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 15(8P23.2) MUTATED | 15 | 25 | 18 | 38 | 4 |
DEL PEAK 15(8P23.2) WILD-TYPE | 11 | 15 | 9 | 4 | 26 |
P value = 0.00145 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
DEL PEAK 15(8P23.2) MUTATED | 22 | 8 | 10 | 17 | 42 |
DEL PEAK 15(8P23.2) WILD-TYPE | 10 | 6 | 23 | 11 | 15 |
P value = 0.00973 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 15(8P23.2) MUTATED | 22 | 16 | 8 | 8 | 24 | 8 | 13 |
DEL PEAK 15(8P23.2) WILD-TYPE | 5 | 20 | 4 | 11 | 8 | 10 | 7 |
P value = 0.01 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 16(8Q11.1) MUTATED | 4 | 4 | 7 | 2 | 0 |
DEL PEAK 16(8Q11.1) WILD-TYPE | 22 | 36 | 20 | 40 | 30 |
P value = 0.0318 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 18(10Q25.2) MUTATED | 14 | 6 | 2 | 3 | 8 | 8 | 6 |
DEL PEAK 18(10Q25.2) WILD-TYPE | 13 | 30 | 10 | 16 | 24 | 10 | 14 |
P value = 0.00157 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 13 | 8 | 20 | 13 | 15 |
DEL PEAK 19(11Q22.3) MUTATED | 3 | 6 | 4 | 2 | 0 |
DEL PEAK 19(11Q22.3) WILD-TYPE | 10 | 2 | 16 | 11 | 15 |
P value = 6e-05 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 19(11Q22.3) MUTATED | 4 | 1 | 10 | 18 | 5 |
DEL PEAK 19(11Q22.3) WILD-TYPE | 22 | 39 | 17 | 24 | 25 |
P value = 0.00541 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
DEL PEAK 19(11Q22.3) MUTATED | 5 | 6 | 12 | 1 | 14 |
DEL PEAK 19(11Q22.3) WILD-TYPE | 27 | 8 | 21 | 27 | 43 |
P value = 0.0077 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 19(11Q22.3) MUTATED | 1 | 13 | 5 | 2 | 6 | 7 | 4 |
DEL PEAK 19(11Q22.3) WILD-TYPE | 26 | 23 | 7 | 17 | 26 | 11 | 16 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 21(14Q11.2) MUTATED | 16 | 23 | 17 | 10 | 4 |
DEL PEAK 21(14Q11.2) WILD-TYPE | 10 | 17 | 10 | 32 | 26 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 22(14Q31.1) MUTATED | 16 | 25 | 15 | 13 | 3 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 10 | 15 | 12 | 29 | 27 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 23(15Q21.1) MUTATED | 14 | 23 | 14 | 25 | 3 |
DEL PEAK 23(15Q21.1) WILD-TYPE | 12 | 17 | 13 | 17 | 27 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 24(15Q22.33) MUTATED | 15 | 22 | 14 | 24 | 2 |
DEL PEAK 24(15Q22.33) WILD-TYPE | 11 | 18 | 13 | 18 | 28 |
P value = 0.0214 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 13 | 8 | 20 | 13 | 15 |
DEL PEAK 26(16Q23.1) MUTATED | 0 | 1 | 1 | 5 | 1 |
DEL PEAK 26(16Q23.1) WILD-TYPE | 13 | 7 | 19 | 8 | 14 |
P value = 0.0037 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 26(16Q23.1) MUTATED | 6 | 2 | 1 | 12 | 2 |
DEL PEAK 26(16Q23.1) WILD-TYPE | 20 | 38 | 26 | 30 | 28 |
P value = 0.00229 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 27(17P11.2) MUTATED | 19 | 26 | 21 | 35 | 12 |
DEL PEAK 27(17P11.2) WILD-TYPE | 7 | 14 | 6 | 7 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 28(18P11.31) MUTATED | 21 | 39 | 21 | 32 | 12 |
DEL PEAK 28(18P11.31) WILD-TYPE | 5 | 1 | 6 | 10 | 18 |
P value = 0.00931 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
DEL PEAK 28(18P11.31) MUTATED | 7 | 20 | 17 | 19 | 14 |
DEL PEAK 28(18P11.31) WILD-TYPE | 7 | 3 | 0 | 6 | 3 |
P value = 0.0057 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 28(18P11.31) MUTATED | 26 | 26 | 7 | 17 | 24 | 9 | 15 |
DEL PEAK 28(18P11.31) WILD-TYPE | 1 | 10 | 5 | 2 | 8 | 9 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 29(18Q21.2) MUTATED | 22 | 40 | 26 | 42 | 15 |
DEL PEAK 29(18Q21.2) WILD-TYPE | 4 | 0 | 1 | 0 | 15 |
P value = 0.00603 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
DEL PEAK 29(18Q21.2) MUTATED | 30 | 13 | 22 | 26 | 53 |
DEL PEAK 29(18Q21.2) WILD-TYPE | 2 | 1 | 11 | 2 | 4 |
P value = 0.0297 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 29(18Q21.2) MUTATED | 27 | 32 | 8 | 17 | 29 | 13 | 18 |
DEL PEAK 29(18Q21.2) WILD-TYPE | 0 | 4 | 4 | 2 | 3 | 5 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 30(18Q22.1) MUTATED | 20 | 40 | 26 | 41 | 14 |
DEL PEAK 30(18Q22.1) WILD-TYPE | 6 | 0 | 1 | 1 | 16 |
P value = 0.0129 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
DEL PEAK 30(18Q22.1) MUTATED | 8 | 20 | 17 | 22 | 16 |
DEL PEAK 30(18Q22.1) WILD-TYPE | 6 | 3 | 0 | 3 | 1 |
P value = 0.028 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
DEL PEAK 30(18Q22.1) MUTATED | 28 | 12 | 22 | 26 | 52 |
DEL PEAK 30(18Q22.1) WILD-TYPE | 4 | 2 | 11 | 2 | 5 |
P value = 0.0116 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 30(18Q22.1) MUTATED | 27 | 30 | 7 | 17 | 29 | 13 | 17 |
DEL PEAK 30(18Q22.1) WILD-TYPE | 0 | 6 | 5 | 2 | 3 | 5 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 26 | 40 | 27 | 42 | 30 |
DEL PEAK 31(18Q23) MUTATED | 20 | 39 | 26 | 41 | 15 |
DEL PEAK 31(18Q23) WILD-TYPE | 6 | 1 | 1 | 1 | 15 |
P value = 0.0322 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 14 | 33 | 28 | 57 |
DEL PEAK 31(18Q23) MUTATED | 29 | 12 | 22 | 26 | 51 |
DEL PEAK 31(18Q23) WILD-TYPE | 3 | 2 | 11 | 2 | 6 |
P value = 0.0293 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 27 | 36 | 12 | 19 | 32 | 18 | 20 |
DEL PEAK 31(18Q23) MUTATED | 27 | 30 | 8 | 17 | 29 | 13 | 16 |
DEL PEAK 31(18Q23) WILD-TYPE | 0 | 6 | 4 | 2 | 3 | 5 | 4 |
P value = 0.00571 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 22 | 63 | 56 |
DEL PEAK 32(19P13.3) MUTATED | 11 | 15 | 8 |
DEL PEAK 32(19P13.3) WILD-TYPE | 11 | 48 | 48 |
P value = 0.011 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 12 | 16 | 6 | 5 |
DEL PEAK 35(22Q13.31) MUTATED | 9 | 4 | 10 | 2 | 0 |
DEL PEAK 35(22Q13.31) WILD-TYPE | 2 | 8 | 6 | 4 | 5 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 14 | 23 | 17 | 25 | 17 |
DEL PEAK 36(XP22.33) MUTATED | 0 | 9 | 3 | 0 | 5 |
DEL PEAK 36(XP22.33) WILD-TYPE | 14 | 14 | 14 | 25 | 12 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/22532761/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/READ-TP/22541962/READ-TP.transferedmergedcluster.txt
-
Number of patients = 165
-
Number of significantly focal cnvs = 58
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.