Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q21.3 48 (29%) 117 0.051339 0.305 0.31622 0.617 0.01119 0.118 0.14582 0.466 0.20193 0.534 0.4054 0.683 0.41812 0.698 0.39724 0.679 0.57054 0.793 0.14986 0.468 0.92174 0.98 0.35642 0.648 amp_1q32.1 49 (30%) 116 0.10043 0.413 0.52823 0.771 0.00204 0.0355 0.21701 0.538 0.02056 0.178 0.15993 0.482 0.65793 0.849 0.89786 0.973 0.63748 0.834 0.76938 0.912 0.49972 0.752 0.24726 0.57 amp_6p21.1 54 (33%) 111 0.01249 0.128 0.13476 0.45 0.00034 0.00763 0.49531 0.752 0.18175 0.506 0.03409 0.244 0.65685 0.849 0.145 0.465 0.22516 0.541 0.38902 0.675 0.49768 0.752 0.40327 0.683 amp_8p11.23 53 (32%) 112 0.072819 0.361 0.28206 0.592 9.9999e-06 0.000535 0.16034 0.482 0.47334 0.735 0.14768 0.467 0.11247 0.415 0.072429 0.361 0.01854 0.17 0.02742 0.217 0.93341 0.983 0.13272 0.45 amp_8p11.21 70 (42%) 95 0.042 0.274 0.21215 0.538 9.9999e-06 0.000535 0.0207 0.178 0.39589 0.679 0.70457 0.874 0.45487 0.719 0.12601 0.441 0.04291 0.276 0.27474 0.592 0.21392 0.538 0.19931 0.531 amp_8q24.21 109 (66%) 56 0.04325 0.276 0.2605 0.582 9.9999e-06 0.000535 0.053969 0.306 0.93694 0.984 0.68999 0.872 0.16694 0.486 0.04696 0.29 0.25982 0.582 0.26305 0.582 0.073169 0.361 0.44736 0.714 amp_10q22.2 11 (7%) 154 0.84426 0.948 0.83816 0.948 0.3722 0.663 0.65315 0.848 0.78281 0.918 0.93617 0.984 0.20382 0.536 0.090349 0.398 0.18142 0.506 0.18986 0.516 NA NA NA NA amp_11p15.5 45 (27%) 120 0.78508 0.918 0.13504 0.45 0.1385 0.456 0.097549 0.409 0.71046 0.874 0.78929 0.919 0.12548 0.441 0.00358 0.0579 0.24208 0.567 0.53756 0.775 0.50632 0.755 0.3635 0.652 amp_11q13.3 28 (17%) 137 0.073819 0.362 0.20838 0.538 0.03564 0.251 0.02666 0.213 0.92891 0.98 0.28813 0.592 0.00411 0.0605 0.01116 0.118 0.080659 0.384 0.34014 0.635 0.04379 0.277 0.12529 0.441 amp_12p13.33 41 (25%) 124 0.20957 0.538 0.13567 0.45 0.11156 0.415 0.24603 0.57 0.054059 0.306 0.62521 0.83 0.5328 0.773 0.48616 0.749 0.84365 0.948 0.8159 0.938 0.28537 0.592 0.14807 0.467 amp_12p12.1 40 (24%) 125 0.44656 0.714 0.13567 0.45 0.062739 0.333 0.10433 0.413 0.01748 0.162 0.51535 0.76 0.42351 0.703 0.36817 0.657 1 1 0.75983 0.904 0.42657 0.707 0.21523 0.538 amp_13q12.13 126 (76%) 39 0.27913 0.592 0.18151 0.506 9.9999e-06 0.000535 0.10425 0.413 0.39928 0.681 0.12043 0.43 0.0067499 0.0839 9.9999e-06 0.000535 0.00033 0.00763 0.00414 0.0605 1 1 1 1 amp_13q12.2 125 (76%) 40 0.40441 0.683 0.28534 0.592 3e-05 0.0011 0.04589 0.288 0.45568 0.719 0.088759 0.396 0.00358 0.0579 9.9999e-05 0.0029 0.0065099 0.0824 0.02152 0.178 1 1 1 1 amp_13q22.1 120 (73%) 45 0.25465 0.581 0.052099 0.305 9.9999e-06 0.000535 0.11121 0.415 0.48475 0.749 0.27449 0.592 0.00378 0.0585 3e-05 0.0011 0.02488 0.201 0.01081 0.118 1 1 0.82939 0.943 amp_16p11.2 47 (28%) 118 0.48698 0.749 0.52842 0.771 9.9999e-06 0.000535 0.0084999 0.102 0.47535 0.737 0.26996 0.589 0.0415 0.274 0.15906 0.482 0.20829 0.538 0.8506 0.95 0.36361 0.652 0.93854 0.984 amp_17q12 46 (28%) 119 0.31667 0.617 0.079839 0.383 0.00417 0.0605 0.2836 0.592 0.30901 0.614 0.055239 0.31 0.4393 0.714 0.068849 0.358 0.58684 0.806 0.59708 0.813 0.11837 0.428 0.56239 0.791 amp_17q24.1 39 (24%) 126 0.72273 0.879 0.74014 0.89 0.00055999 0.0118 0.057669 0.316 0.66885 0.859 0.24681 0.57 0.31622 0.617 0.10034 0.413 0.65865 0.849 0.20993 0.538 0.37439 0.664 0.82485 0.942 amp_20q11.21 146 (88%) 19 0.12743 0.441 0.16509 0.486 5e-05 0.00174 0.0050699 0.0706 0.03758 0.261 0.24307 0.568 0.15472 0.478 0.00027 0.00648 0.33334 0.629 0.39664 0.679 0.32828 0.625 0.43163 0.711 amp_20q11.23 147 (89%) 18 0.12727 0.441 0.16655 0.486 7.9999e-05 0.00242 0.02319 0.19 0.03789 0.261 0.24477 0.57 0.2127 0.538 0.00021 0.00522 0.17694 0.503 0.2782 0.592 0.50051 0.752 0.69166 0.872 amp_20q13.33 146 (88%) 19 0.19924 0.531 0.21116 0.538 0.00012 0.00321 0.079319 0.383 0.1055 0.413 0.46519 0.726 0.6117 0.819 0.00065999 0.0135 0.33046 0.627 0.39533 0.679 0.17619 0.503 0.69726 0.872 amp_xp22.2 32 (19%) 133 0.167 0.486 0.50673 0.755 0.69954 0.873 0.35376 0.645 0.40348 0.683 0.37916 0.668 0.43628 0.713 0.62914 0.833 0.69239 0.872 0.86882 0.961 0.3185 0.617 0.83976 0.948 amp_xq27.3 37 (22%) 128 0.74632 0.893 0.44134 0.714 0.10169 0.413 0.03428 0.244 0.071439 0.361 0.51339 0.76 0.04043 0.273 0.2376 0.564 0.216 0.538 0.27666 0.592 0.096069 0.409 0.01961 0.175 del_1p36.11 75 (45%) 90 0.29995 0.602 0.070019 0.361 0.01629 0.153 0.13028 0.449 0.5871 0.806 0.79116 0.919 0.19245 0.52 0.01462 0.14 0.77026 0.912 0.063719 0.336 0.73592 0.888 0.79081 0.919 del_1p33 53 (32%) 112 0.36656 0.656 0.01463 0.14 0.00013 0.00335 0.11193 0.415 0.29869 0.601 0.26354 0.582 0.31056 0.615 0.18569 0.515 0.56321 0.791 0.26563 0.582 0.92389 0.98 0.4405 0.714 del_1p13.2 54 (33%) 111 0.77636 0.915 0.052719 0.305 0.00104 0.0207 0.082059 0.384 0.54397 0.782 0.58165 0.802 0.48912 0.749 0.01947 0.175 0.31201 0.615 0.21412 0.538 0.58173 0.802 0.69334 0.872 del_2p12 13 (8%) 152 0.01464 0.14 0.67182 0.861 0.02098 0.178 1 1 0.27747 0.592 0.38028 0.668 0.71588 0.876 0.14115 0.461 0.10393 0.413 0.14486 0.465 NA NA NA NA del_3p14.2 31 (19%) 134 0.94303 0.987 0.96636 1 0.83763 0.948 0.089249 0.396 0.17203 0.495 0.2936 0.596 0.55608 0.788 0.86164 0.956 0.92301 0.98 0.96105 0.998 0.2613 0.582 0.15955 0.482 del_3q26.31 18 (11%) 147 0.54986 0.783 0.92816 0.98 0.32121 0.621 0.02108 0.178 0.36044 0.652 0.61081 0.819 0.56209 0.791 0.43189 0.711 0.55059 0.783 0.03428 0.244 0.62982 0.833 0.61247 0.819 del_4p13 60 (36%) 105 0.54574 0.782 0.079059 0.383 3e-05 0.0011 0.61654 0.822 0.31122 0.615 0.22113 0.538 0.87544 0.962 0.34295 0.635 0.72071 0.878 0.21864 0.538 0.18152 0.506 0.48982 0.749 del_4q22.1 73 (44%) 92 0.55095 0.783 0.0329 0.244 6.9999e-05 0.00221 0.77955 0.917 0.1094 0.415 0.082929 0.385 0.38847 0.675 0.31753 0.617 0.83264 0.945 0.25667 0.582 0.68448 0.872 0.67362 0.862 del_4q35.1 72 (44%) 93 0.46193 0.724 0.10552 0.413 9.9999e-06 0.000535 0.9121 0.98 0.28218 0.592 0.01299 0.129 0.60318 0.815 0.04896 0.299 0.29159 0.595 0.050299 0.304 0.57057 0.793 0.86271 0.956 del_5q12.1 53 (32%) 112 0.11072 0.415 0.00431 0.0612 0.00123 0.0235 0.086129 0.39 0.4459 0.714 0.71213 0.874 0.58169 0.802 0.093539 0.405 0.2305 0.551 0.28764 0.592 0.15859 0.482 0.11931 0.428 del_5q22.2 59 (36%) 106 0.16064 0.482 0.00125 0.0235 0.0096499 0.111 0.33781 0.634 0.38853 0.675 0.89419 0.972 0.73291 0.887 0.18776 0.516 0.51268 0.76 0.23903 0.564 0.04029 0.273 0.096289 0.409 del_6p25.3 24 (15%) 141 0.44835 0.714 0.63184 0.834 0.8954 0.972 0.11905 0.428 0.57648 0.799 0.44477 0.714 0.88102 0.963 0.69658 0.872 0.8293 0.943 0.7844 0.918 0.63257 0.834 0.61289 0.819 del_6q26 30 (18%) 135 0.16995 0.491 0.95544 0.997 0.1811 0.506 0.61116 0.819 0.053059 0.305 0.14829 0.467 0.20182 0.534 0.32413 0.623 0.086779 0.39 0.33291 0.629 0.066849 0.35 0.84012 0.948 del_7q31.1 4 (2%) 161 NA NA NA NA 0.03432 0.244 NA NA 0.85046 0.95 0.64314 0.838 0.17659 0.503 0.77076 0.912 1 1 1 1 NA NA NA NA del_8p23.2 100 (61%) 65 0.18671 0.516 0.062099 0.332 9.9999e-06 0.000535 0.43876 0.714 0.9153 0.98 0.77427 0.915 0.00145 0.0266 0.0097299 0.111 0.64691 0.842 0.32884 0.625 0.4523 0.719 0.52548 0.77 del_8q11.1 17 (10%) 148 0.69132 0.872 0.28267 0.592 0.01005 0.113 0.080999 0.384 0.92435 0.98 0.70873 0.874 0.6433 0.838 0.10238 0.413 0.2082 0.538 0.086629 0.39 0.32847 0.625 0.56507 0.791 del_10q21.1 41 (25%) 124 0.10467 0.413 0.56453 0.791 0.086189 0.39 0.14169 0.461 0.24055 0.566 0.20396 0.536 0.22168 0.538 0.53673 0.775 0.39327 0.679 0.18892 0.516 0.92796 0.98 0.6954 0.872 del_10q25.2 48 (29%) 117 0.40197 0.683 0.56631 0.791 0.16192 0.482 0.32263 0.622 0.60261 0.815 0.7452 0.893 0.20597 0.538 0.03178 0.24 0.70884 0.874 0.27668 0.592 0.42878 0.709 0.5646 0.791 del_11q22.3 38 (23%) 127 0.00157 0.028 0.04219 0.274 5.9999e-05 0.00199 0.19268 0.52 0.85186 0.95 0.38814 0.675 0.0054099 0.0738 0.0076999 0.094 0.29074 0.595 0.96557 1 0.28018 0.592 0.22115 0.538 del_12q13.2 20 (12%) 145 0.31438 0.617 0.87162 0.961 0.26004 0.582 0.48858 0.749 0.3596 0.652 0.51455 0.76 0.5889 0.806 0.79854 0.925 0.70973 0.874 0.78809 0.919 0.51158 0.76 0.56923 0.793 del_14q11.2 70 (42%) 95 0.45845 0.72 0.092589 0.405 2e-05 0.000928 0.34495 0.635 0.91801 0.98 0.54624 0.782 0.29814 0.601 0.098219 0.409 0.072599 0.361 0.3422 0.635 0.60415 0.815 0.95211 0.995 del_14q31.1 72 (44%) 93 0.4585 0.72 0.1064 0.414 2e-05 0.000928 0.30337 0.605 0.97045 1 0.58973 0.806 0.21842 0.538 0.097059 0.409 0.40749 0.683 0.23826 0.564 0.45344 0.719 0.90388 0.977 del_15q21.1 79 (48%) 86 0.057519 0.316 0.14467 0.465 0.00012 0.00321 0.81673 0.938 0.093589 0.405 0.75671 0.903 0.38043 0.668 0.4139 0.692 0.43349 0.712 0.43523 0.713 0.34649 0.636 0.55122 0.783 del_15q22.33 77 (47%) 88 0.072049 0.361 0.19438 0.522 3e-05 0.0011 0.38075 0.668 0.13395 0.45 0.25153 0.578 0.34144 0.635 0.10113 0.413 0.85435 0.951 0.74445 0.893 0.67779 0.866 0.44521 0.714 del_16p13.3 14 (8%) 151 0.16151 0.482 0.73626 0.888 0.26543 0.582 0.13442 0.45 0.50131 0.752 0.69054 0.872 0.23854 0.564 0.92755 0.98 0.15469 0.478 0.46289 0.724 0.65397 0.848 0.53484 0.774 del_16q23.1 23 (14%) 142 0.02141 0.178 0.52365 0.769 0.0037 0.0585 0.5991 0.814 0.44824 0.714 0.50097 0.752 0.42196 0.703 0.73851 0.889 1 1 0.84402 0.948 0.80852 0.933 0.92519 0.98 del_17p11.2 113 (68%) 52 0.056629 0.315 0.81931 0.938 0.00229 0.0389 0.63635 0.834 0.70823 0.874 0.28853 0.592 0.22536 0.541 0.21774 0.538 0.71772 0.876 0.35396 0.645 0.88822 0.969 0.92365 0.98 del_18p11.31 125 (76%) 40 0.060759 0.328 0.50153 0.752 9.9999e-06 0.000535 0.0093099 0.11 0.2611 0.582 0.32626 0.625 0.0471 0.29 0.0056999 0.075 0.18916 0.516 0.22193 0.538 0.79971 0.925 0.34895 0.639 del_18q21.2 145 (88%) 20 0.13182 0.45 0.40739 0.683 9.9999e-06 0.000535 0.052229 0.305 1 1 0.086359 0.39 0.0060299 0.0777 0.02971 0.227 0.22269 0.538 0.12414 0.441 0.89229 0.972 0.69796 0.872 del_18q22.1 141 (85%) 24 0.1081 0.415 0.11894 0.428 9.9999e-06 0.000535 0.01295 0.129 0.91062 0.98 0.16929 0.491 0.02798 0.219 0.01157 0.12 0.1119 0.415 0.29748 0.601 0.63452 0.834 0.87944 0.963 del_18q23 141 (85%) 24 0.33574 0.632 0.25636 0.582 9.9999e-06 0.000535 0.052979 0.305 0.79234 0.919 0.14905 0.467 0.03216 0.241 0.02934 0.227 0.15515 0.478 0.532 0.773 0.6353 0.834 0.87962 0.963 del_19p13.3 36 (22%) 129 0.98828 1 0.81888 0.938 0.13886 0.456 0.16391 0.485 0.72764 0.882 0.80952 0.933 0.87399 0.962 0.91395 0.98 0.4953 0.752 0.0057099 0.075 0.46971 0.731 0.52058 0.766 del_20p12.1 49 (30%) 116 0.82548 0.942 0.30247 0.605 0.1128 0.415 0.9595 0.998 0.9033 0.977 0.86188 0.956 0.36153 0.652 0.37496 0.664 0.70229 0.874 0.25284 0.579 0.60288 0.815 0.26459 0.582 del_21q11.2 73 (44%) 92 0.61844 0.823 0.10801 0.415 0.060299 0.328 0.7577 0.903 0.34409 0.635 0.50277 0.753 0.50048 0.752 0.70869 0.874 0.082169 0.384 0.72644 0.882 0.2805 0.592 0.28726 0.592 del_22q13.31 68 (41%) 97 0.6885 0.872 0.33876 0.634 0.04089 0.274 0.91728 0.98 0.29336 0.596 0.39254 0.679 0.59393 0.811 0.27187 0.591 0.21528 0.538 0.11328 0.415 0.098249 0.409 0.01104 0.118 del_xp22.33 34 (21%) 131 0.95864 0.998 0.87114 0.961 0.26613 0.582 0.00041 0.00892 0.84702 0.949 0.87624 0.962 0.98392 1 0.53141 0.773 0.66347 0.854 1 1 0.77677 0.915 0.71553 0.876