This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 59 arm-level events and 10 molecular subtypes across 499 patients, 248 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF'.
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11p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11q gain cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp gain cnv correlated to 'METHLYATION_CNMF'.
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xq gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
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nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7q gain | 20 (4%) | 479 |
0.00657 (0.0257) |
0.00032 (0.00255) |
0.143 (0.252) |
0.0166 (0.0505) |
0.00032 (0.00255) |
2e-05 (0.000381) |
0.00302 (0.0134) |
1e-05 (0.000311) |
0.00025 (0.00214) |
7e-05 (0.000843) |
17p gain | 16 (3%) | 483 |
0.00019 (0.00184) |
2e-05 (0.000381) |
0.323 (0.47) |
0.0313 (0.0832) |
1e-05 (0.000311) |
1e-05 (0.000311) |
0.00044 (0.00317) |
1e-05 (0.000311) |
7e-05 (0.000843) |
3e-05 (0.000506) |
17q gain | 18 (4%) | 481 |
0.00035 (0.00265) |
1e-05 (0.000311) |
0.7 (0.799) |
0.017 (0.051) |
4e-05 (0.000638) |
1e-05 (0.000311) |
0.00047 (0.00334) |
1e-05 (0.000311) |
8e-05 (0.000908) |
2e-05 (0.000381) |
5p gain | 21 (4%) | 478 |
0.00888 (0.0325) |
0.00585 (0.0235) |
0.126 (0.228) |
0.262 (0.407) |
0.0127 (0.0439) |
8e-05 (0.000908) |
0.00261 (0.0118) |
0.00013 (0.00139) |
0.00637 (0.0251) |
0.00146 (0.0073) |
5q gain | 17 (3%) | 482 |
0.00067 (0.00416) |
0.00027 (0.00221) |
0.267 (0.407) |
0.0881 (0.177) |
0.00057 (0.00374) |
0.0001 (0.00109) |
0.00124 (0.00671) |
1e-05 (0.000311) |
0.00135 (0.00705) |
0.00052 (0.00349) |
7p gain | 18 (4%) | 481 |
0.00539 (0.0219) |
0.0013 (0.00691) |
0.237 (0.375) |
0.0587 (0.133) |
0.00195 (0.00935) |
0.00014 (0.00147) |
0.0117 (0.0417) |
4e-05 (0.000638) |
0.00214 (0.00994) |
0.00089 (0.0053) |
12p gain | 15 (3%) | 484 |
0.00048 (0.00337) |
2e-05 (0.000381) |
0.767 (0.859) |
0.0893 (0.179) |
5e-05 (0.000737) |
1e-05 (0.000311) |
0.00026 (0.00216) |
1e-05 (0.000311) |
0.00022 (0.00197) |
5e-05 (0.000737) |
12q gain | 15 (3%) | 484 |
0.00051 (0.00349) |
5e-05 (0.000737) |
0.766 (0.859) |
0.088 (0.177) |
2e-05 (0.000381) |
1e-05 (0.000311) |
0.0002 (0.0019) |
2e-05 (0.000381) |
0.00026 (0.00216) |
7e-05 (0.000843) |
16p gain | 15 (3%) | 484 |
0.0004 (0.00295) |
0.00142 (0.00716) |
0.7 (0.799) |
0.0856 (0.175) |
0.00052 (0.00349) |
3e-05 (0.000506) |
0.00627 (0.0248) |
6e-05 (0.000823) |
0.00033 (0.00256) |
6e-05 (0.000823) |
16q gain | 13 (3%) | 486 |
0.00142 (0.00716) |
0.0071 (0.0272) |
0.446 (0.589) |
0.296 (0.446) |
0.0027 (0.0121) |
0.00039 (0.00291) |
0.0309 (0.0828) |
0.00022 (0.00197) |
0.00255 (0.0116) |
0.00067 (0.00416) |
19q gain | 10 (2%) | 489 |
0.012 (0.0418) |
0.00195 (0.00935) |
0.368 (0.515) |
0.0712 (0.15) |
0.00019 (0.00184) |
2e-05 (0.000381) |
0.00913 (0.0333) |
1e-05 (0.000311) |
0.00443 (0.0183) |
9e-05 (0.001) |
2p loss | 10 (2%) | 489 |
0.00231 (0.0106) |
0.00198 (0.00942) |
0.637 (0.749) |
0.092 (0.18) |
0.00017 (0.0017) |
8e-05 (0.000908) |
0.0134 (0.0452) |
2e-05 (0.000381) |
0.00139 (0.00713) |
1e-05 (0.000311) |
2q loss | 10 (2%) | 489 |
0.00202 (0.00953) |
0.00168 (0.00819) |
0.577 (0.709) |
0.0943 (0.183) |
0.00015 (0.00155) |
3e-05 (0.000506) |
0.0136 (0.0457) |
2e-05 (0.000381) |
0.0013 (0.00691) |
2e-05 (0.000381) |
22q loss | 89 (18%) | 410 |
1e-05 (0.000311) |
1e-05 (0.000311) |
0.41 (0.558) |
0.509 (0.65) |
1e-05 (0.000311) |
1e-05 (0.000311) |
0.00478 (0.0196) |
6e-05 (0.000823) |
3e-05 (0.000506) |
7e-05 (0.000843) |
1q gain | 26 (5%) | 473 |
0.196 (0.327) |
1e-05 (0.000311) |
0.0512 (0.12) |
0.0559 (0.129) |
0.00016 (0.00163) |
1e-05 (0.000311) |
0.0153 (0.0489) |
0.0478 (0.114) |
0.0399 (0.103) |
0.0149 (0.0477) |
14q gain | 11 (2%) | 488 |
0.00089 (0.0053) |
0.00043 (0.00313) |
0.483 (0.628) |
0.17 (0.294) |
0.00133 (0.00701) |
0.00022 (0.00197) |
0.0565 (0.13) |
7e-05 (0.000843) |
0.00119 (0.00656) |
0.00023 (0.00203) |
6q loss | 7 (1%) | 492 |
0.0197 (0.0565) |
0.0297 (0.0806) |
0.102 (0.193) |
0.579 (0.71) |
0.047 (0.113) |
0.0186 (0.0541) |
0.312 (0.462) |
0.00067 (0.00416) |
0.0408 (0.104) |
0.00097 (0.00567) |
13q loss | 14 (3%) | 485 |
0.0132 (0.0448) |
0.0702 (0.149) |
0.0075 (0.0282) |
0.132 (0.237) |
0.0116 (0.0413) |
0.00858 (0.0316) |
0.121 (0.221) |
0.00052 (0.00349) |
0.01 (0.0363) |
0.00033 (0.00256) |
15q loss | 8 (2%) | 491 |
0.172 (0.294) |
0.012 (0.0418) |
0.154 (0.27) |
0.095 (0.184) |
0.00124 (0.00671) |
0.00022 (0.00197) |
0.014 (0.0462) |
2e-05 (0.000381) |
0.0043 (0.018) |
7e-05 (0.000843) |
19p loss | 5 (1%) | 494 |
0.727 (0.825) |
0.031 (0.0828) |
0.122 (0.222) |
0.261 (0.406) |
0.0242 (0.0677) |
0.0141 (0.0462) |
0.0428 (0.106) |
0.00104 (0.00596) |
0.00226 (0.0104) |
0.00107 (0.00607) |
19p gain | 8 (2%) | 491 |
0.00765 (0.0286) |
0.012 (0.0418) |
0.00149 (0.00739) |
0.00024 (0.00208) |
0.0531 (0.124) |
2e-05 (0.000381) |
0.0682 (0.148) |
0.00098 (0.00567) |
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20p gain | 12 (2%) | 487 |
0.0039 (0.0172) |
0.0176 (0.052) |
0.446 (0.589) |
0.102 (0.193) |
0.00692 (0.0267) |
0.00088 (0.0053) |
0.0562 (0.129) |
0.00066 (0.00416) |
0.0507 (0.12) |
0.02 (0.0569) |
20q gain | 12 (2%) | 487 |
0.00403 (0.0174) |
0.0165 (0.0505) |
0.445 (0.589) |
0.102 (0.193) |
0.0073 (0.0278) |
0.00109 (0.00612) |
0.0571 (0.131) |
0.0006 (0.00389) |
0.0513 (0.12) |
0.0196 (0.0563) |
xq gain | 7 (1%) | 492 |
0.0793 (0.164) |
0.0294 (0.0806) |
0.776 (0.863) |
0.518 (0.657) |
0.0471 (0.113) |
0.018 (0.0528) |
0.0984 (0.188) |
0.00608 (0.0242) |
0.0157 (0.0493) |
0.0259 (0.0714) |
11p loss | 7 (1%) | 492 |
0.239 (0.376) |
0.0299 (0.0806) |
0.785 (0.87) |
0.959 (1.00) |
0.0145 (0.0468) |
0.0185 (0.0541) |
0.0985 (0.188) |
0.00093 (0.00549) |
0.0413 (0.104) |
0.00139 (0.00713) |
11q loss | 9 (2%) | 490 |
0.437 (0.585) |
0.0155 (0.0491) |
0.605 (0.732) |
0.831 (0.913) |
0.0398 (0.103) |
0.0189 (0.0548) |
0.0814 (0.167) |
0.00209 (0.00979) |
0.0119 (0.0418) |
0.00035 (0.00265) |
4p gain | 5 (1%) | 494 |
0.0885 (0.178) |
0.0322 (0.0846) |
0.0238 (0.0671) |
0.0144 (0.0468) |
0.474 (0.62) |
0.0139 (0.0462) |
0.0673 (0.146) |
0.0128 (0.0439) |
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4q gain | 5 (1%) | 494 |
0.0901 (0.18) |
0.0318 (0.0842) |
0.0244 (0.068) |
0.0141 (0.0462) |
0.473 (0.62) |
0.0145 (0.0468) |
0.0673 (0.146) |
0.0132 (0.0448) |
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8p loss | 4 (1%) | 495 |
0.202 (0.331) |
0.299 (0.449) |
0.0697 (0.149) |
0.0472 (0.113) |
0.0434 (0.107) |
0.00435 (0.0181) |
0.0399 (0.103) |
0.017 (0.051) |
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8q loss | 4 (1%) | 495 |
0.202 (0.331) |
0.299 (0.449) |
0.0693 (0.149) |
0.0472 (0.113) |
0.0418 (0.104) |
0.00404 (0.0174) |
0.0417 (0.104) |
0.0166 (0.0505) |
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9q loss | 25 (5%) | 474 |
0.00057 (0.00374) |
0.035 (0.0915) |
0.572 (0.707) |
0.118 (0.215) |
0.269 (0.409) |
0.0599 (0.134) |
0.0534 (0.124) |
0.00745 (0.0282) |
0.0108 (0.0388) |
0.0171 (0.0511) |
10p loss | 7 (1%) | 492 |
0.0807 (0.166) |
0.275 (0.417) |
0.365 (0.513) |
0.444 (0.589) |
0.0323 (0.0846) |
0.0157 (0.0493) |
0.314 (0.463) |
0.00081 (0.00498) |
0.0415 (0.104) |
0.00118 (0.00656) |
11p gain | 6 (1%) | 493 |
0.0413 (0.104) |
0.18 (0.305) |
0.884 (0.966) |
0.303 (0.451) |
0.0703 (0.149) |
0.0467 (0.113) |
0.00165 (0.00811) |
0.00685 (0.0266) |
0.138 (0.245) |
0.0924 (0.18) |
9p loss | 19 (4%) | 480 |
0.0242 (0.0677) |
0.092 (0.18) |
0.941 (1.00) |
0.648 (0.754) |
0.0582 (0.132) |
0.0622 (0.139) |
0.21 (0.342) |
0.00842 (0.0312) |
0.0173 (0.0513) |
0.0252 (0.0699) |
3q loss | 4 (1%) | 495 |
0.201 (0.331) |
0.0867 (0.176) |
0.365 (0.513) |
0.444 (0.589) |
0.0698 (0.149) |
0.048 (0.114) |
0.334 (0.483) |
0.00409 (0.0174) |
0.216 (0.348) |
0.00411 (0.0174) |
10q loss | 6 (1%) | 493 |
0.144 (0.253) |
0.422 (0.57) |
0.0712 (0.15) |
0.0472 (0.113) |
0.435 (0.585) |
0.00424 (0.0179) |
0.102 (0.193) |
0.0041 (0.0174) |
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11q gain | 5 (1%) | 494 |
0.0878 (0.177) |
0.316 (0.465) |
0.883 (0.966) |
0.302 (0.451) |
0.174 (0.296) |
0.123 (0.223) |
0.00555 (0.0224) |
0.023 (0.0652) |
0.4 (0.546) |
0.266 (0.407) |
1q loss | 3 (1%) | 496 |
0.255 (0.399) |
0.224 (0.357) |
0.171 (0.294) |
0.173 (0.296) |
0.765 (0.859) |
0.0166 (0.0505) |
0.565 (0.704) |
0.0166 (0.0505) |
||
3p loss | 3 (1%) | 496 |
0.256 (0.399) |
0.222 (0.354) |
0.17 (0.294) |
0.17 (0.294) |
0.766 (0.859) |
0.0164 (0.0505) |
0.565 (0.704) |
0.0168 (0.0507) |
||
8p gain | 6 (1%) | 493 |
0.0412 (0.104) |
0.959 (1.00) |
1 (1.00) |
0.646 (0.753) |
0.704 (0.802) |
0.544 (0.686) |
0.721 (0.82) |
0.451 (0.593) |
1 (1.00) |
0.451 (0.593) |
xp gain | 8 (2%) | 491 |
0.0589 (0.133) |
0.0299 (0.0806) |
0.773 (0.863) |
0.518 (0.657) |
0.0722 (0.152) |
0.0602 (0.135) |
0.279 (0.422) |
0.0733 (0.153) |
0.0593 (0.133) |
0.157 (0.275) |
1p loss | 4 (1%) | 495 |
0.488 (0.628) |
0.613 (0.738) |
0.341 (0.489) |
0.318 (0.466) |
0.682 (0.79) |
0.0648 (0.144) |
0.345 (0.493) |
0.0412 (0.104) |
||
6p loss | 4 (1%) | 495 |
0.2 (0.331) |
0.302 (0.451) |
0.552 (0.692) |
0.411 (0.559) |
0.684 (0.791) |
0.0666 (0.146) |
0.346 (0.493) |
0.0405 (0.104) |
||
21q loss | 8 (2%) | 491 |
0.6 (0.727) |
0.699 (0.799) |
0.631 (0.747) |
0.219 (0.351) |
0.326 (0.473) |
0.428 (0.576) |
0.11 (0.204) |
0.0295 (0.0806) |
0.354 (0.501) |
0.0529 (0.124) |
1p gain | 4 (1%) | 495 |
0.7 (0.799) |
0.694 (0.799) |
0.504 (0.645) |
0.614 (0.738) |
0.482 (0.628) |
0.137 (0.245) |
0.625 (0.746) |
0.36 (0.508) |
||
3p gain | 3 (1%) | 496 |
0.623 (0.746) |
0.776 (0.863) |
0.641 (0.751) |
0.587 (0.717) |
0.765 (0.859) |
0.189 (0.317) |
0.563 (0.704) |
0.187 (0.314) |
||
8q gain | 7 (1%) | 492 |
0.0791 (0.164) |
0.826 (0.909) |
1 (1.00) |
0.644 (0.753) |
0.912 (0.993) |
0.517 (0.657) |
0.766 (0.859) |
0.63 (0.747) |
0.882 (0.966) |
0.628 (0.747) |
9p gain | 3 (1%) | 496 |
0.623 (0.746) |
0.776 (0.863) |
0.642 (0.751) |
0.589 (0.718) |
0.598 (0.727) |
1 (1.00) |
0.895 (0.976) |
1 (1.00) |
||
9q gain | 4 (1%) | 495 |
0.486 (0.628) |
0.921 (1.00) |
0.377 (0.524) |
0.377 (0.524) |
0.438 (0.585) |
1 (1.00) |
0.587 (0.717) |
1 (1.00) |
||
13q gain | 5 (1%) | 494 |
0.392 (0.54) |
0.135 (0.242) |
0.633 (0.747) |
0.216 (0.348) |
0.0689 (0.149) |
0.103 (0.194) |
0.573 (0.707) |
0.0744 (0.155) |
0.219 (0.351) |
0.183 (0.309) |
18p gain | 6 (1%) | 493 |
0.181 (0.306) |
0.42 (0.569) |
0.211 (0.342) |
0.266 (0.407) |
0.227 (0.359) |
0.112 (0.207) |
0.526 (0.665) |
0.108 (0.201) |
||
18q gain | 6 (1%) | 493 |
0.177 (0.302) |
0.42 (0.569) |
0.208 (0.341) |
0.266 (0.407) |
0.227 (0.359) |
0.11 (0.205) |
0.526 (0.665) |
0.108 (0.202) |
||
21q gain | 5 (1%) | 494 |
0.391 (0.54) |
0.687 (0.792) |
0.338 (0.487) |
0.493 (0.632) |
0.141 (0.25) |
0.308 (0.458) |
0.792 (0.875) |
0.572 (0.707) |
||
17p loss | 8 (2%) | 491 |
0.215 (0.348) |
0.795 (0.876) |
0.635 (0.748) |
0.392 (0.54) |
0.764 (0.859) |
0.6 (0.727) |
0.311 (0.46) |
0.162 (0.283) |
0.264 (0.407) |
0.164 (0.285) |
17q loss | 4 (1%) | 495 |
0.485 (0.628) |
0.577 (0.709) |
1 (1.00) |
0.667 (0.775) |
0.19 (0.318) |
0.573 (0.707) |
0.792 (0.875) |
0.565 (0.704) |
||
18p loss | 4 (1%) | 495 |
0.485 (0.628) |
0.115 (0.212) |
0.633 (0.747) |
0.394 (0.54) |
0.338 (0.487) |
0.317 (0.465) |
0.368 (0.515) |
0.091 (0.18) |
0.349 (0.497) |
0.266 (0.407) |
18q loss | 4 (1%) | 495 |
0.489 (0.629) |
0.113 (0.208) |
0.629 (0.747) |
0.393 (0.54) |
0.342 (0.489) |
0.32 (0.467) |
0.371 (0.517) |
0.091 (0.18) |
0.351 (0.498) |
0.263 (0.407) |
xp loss | 4 (1%) | 495 |
0.488 (0.628) |
0.613 (0.738) |
0.0652 (0.144) |
0.199 (0.33) |
0.55 (0.692) |
0.218 (0.35) |
0.0806 (0.166) |
0.0919 (0.18) |
0.138 (0.245) |
0.0915 (0.18) |
xq loss | 5 (1%) | 494 |
0.331 (0.48) |
0.687 (0.792) |
0.0653 (0.144) |
0.202 (0.331) |
0.437 (0.585) |
0.393 (0.54) |
0.244 (0.383) |
0.0982 (0.188) |
0.128 (0.232) |
0.0964 (0.186) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
1Q GAIN MUTATED | 11 | 2 | 7 | 1 | 5 |
1Q GAIN WILD-TYPE | 35 | 145 | 77 | 41 | 175 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
1Q GAIN MUTATED | 17 | 2 | 5 | 2 |
1Q GAIN WILD-TYPE | 141 | 165 | 53 | 112 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
1Q GAIN MUTATED | 17 | 2 | 1 | 2 | 4 |
1Q GAIN WILD-TYPE | 87 | 132 | 85 | 93 | 74 |
P value = 0.0153 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
1Q GAIN MUTATED | 15 | 3 | 3 | 5 |
1Q GAIN WILD-TYPE | 150 | 142 | 116 | 64 |
P value = 0.0478 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
1Q GAIN MUTATED | 15 | 3 | 8 |
1Q GAIN WILD-TYPE | 163 | 125 | 184 |
P value = 0.0399 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
1Q GAIN MUTATED | 12 | 2 | 4 | 4 |
1Q GAIN WILD-TYPE | 119 | 123 | 104 | 100 |
P value = 0.0149 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
1Q GAIN MUTATED | 14 | 2 | 6 |
1Q GAIN WILD-TYPE | 149 | 118 | 179 |
P value = 0.0322 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
4P GAIN MUTATED | 0 | 5 | 0 | 0 | 0 |
4P GAIN WILD-TYPE | 46 | 142 | 84 | 42 | 180 |
P value = 0.0238 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
4P GAIN MUTATED | 0 | 5 | 0 | 0 |
4P GAIN WILD-TYPE | 158 | 162 | 58 | 114 |
P value = 0.0144 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
4P GAIN MUTATED | 0 | 5 | 0 | 0 | 0 |
4P GAIN WILD-TYPE | 104 | 129 | 86 | 95 | 78 |
P value = 0.0139 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
4P GAIN MUTATED | 1 | 4 | 0 |
4P GAIN WILD-TYPE | 177 | 124 | 192 |
P value = 0.0128 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
4P GAIN MUTATED | 1 | 4 | 0 |
4P GAIN WILD-TYPE | 162 | 116 | 185 |
P value = 0.0318 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
4Q GAIN MUTATED | 0 | 5 | 0 | 0 | 0 |
4Q GAIN WILD-TYPE | 46 | 142 | 84 | 42 | 180 |
P value = 0.0244 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
4Q GAIN MUTATED | 0 | 5 | 0 | 0 |
4Q GAIN WILD-TYPE | 158 | 162 | 58 | 114 |
P value = 0.0141 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
4Q GAIN MUTATED | 0 | 5 | 0 | 0 | 0 |
4Q GAIN WILD-TYPE | 104 | 129 | 86 | 95 | 78 |
P value = 0.0145 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
4Q GAIN MUTATED | 1 | 4 | 0 |
4Q GAIN WILD-TYPE | 177 | 124 | 192 |
P value = 0.0132 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
4Q GAIN MUTATED | 1 | 4 | 0 |
4Q GAIN WILD-TYPE | 162 | 116 | 185 |
P value = 0.00888 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
5P GAIN MUTATED | 4 | 1 | 16 |
5P GAIN WILD-TYPE | 128 | 137 | 213 |
P value = 0.00585 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
5P GAIN MUTATED | 2 | 14 | 2 | 0 | 3 |
5P GAIN WILD-TYPE | 44 | 133 | 82 | 42 | 177 |
P value = 0.0127 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
5P GAIN MUTATED | 5 | 14 | 1 | 1 |
5P GAIN WILD-TYPE | 153 | 153 | 57 | 113 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
5P GAIN MUTATED | 6 | 14 | 0 | 1 | 0 |
5P GAIN WILD-TYPE | 98 | 120 | 86 | 94 | 78 |
P value = 0.00261 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
5P GAIN MUTATED | 8 | 12 | 0 | 1 |
5P GAIN WILD-TYPE | 157 | 133 | 119 | 68 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
5P GAIN MUTATED | 7 | 13 | 1 |
5P GAIN WILD-TYPE | 171 | 115 | 191 |
P value = 0.00637 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
5P GAIN MUTATED | 6 | 10 | 2 | 0 |
5P GAIN WILD-TYPE | 125 | 115 | 106 | 104 |
P value = 0.00146 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
5P GAIN MUTATED | 7 | 10 | 1 |
5P GAIN WILD-TYPE | 156 | 110 | 184 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
5Q GAIN MUTATED | 2 | 0 | 15 |
5Q GAIN WILD-TYPE | 130 | 138 | 214 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
5Q GAIN MUTATED | 1 | 14 | 1 | 0 | 1 |
5Q GAIN WILD-TYPE | 45 | 133 | 83 | 42 | 179 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
5Q GAIN MUTATED | 2 | 14 | 0 | 1 |
5Q GAIN WILD-TYPE | 156 | 153 | 58 | 113 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
5Q GAIN MUTATED | 2 | 14 | 0 | 1 | 0 |
5Q GAIN WILD-TYPE | 102 | 120 | 86 | 94 | 78 |
P value = 0.00124 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
5Q GAIN MUTATED | 4 | 12 | 0 | 1 |
5Q GAIN WILD-TYPE | 161 | 133 | 119 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
5Q GAIN MUTATED | 3 | 13 | 1 |
5Q GAIN WILD-TYPE | 175 | 115 | 191 |
P value = 0.00135 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
5Q GAIN MUTATED | 3 | 10 | 1 | 0 |
5Q GAIN WILD-TYPE | 128 | 115 | 107 | 104 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
5Q GAIN MUTATED | 3 | 10 | 1 |
5Q GAIN WILD-TYPE | 160 | 110 | 184 |
P value = 0.00539 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
7P GAIN MUTATED | 2 | 1 | 15 |
7P GAIN WILD-TYPE | 130 | 137 | 214 |
P value = 0.0013 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
7P GAIN MUTATED | 1 | 13 | 3 | 0 | 1 |
7P GAIN WILD-TYPE | 45 | 134 | 81 | 42 | 179 |
P value = 0.00195 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
7P GAIN MUTATED | 2 | 14 | 1 | 1 |
7P GAIN WILD-TYPE | 156 | 153 | 57 | 113 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
7P GAIN MUTATED | 2 | 14 | 1 | 1 | 0 |
7P GAIN WILD-TYPE | 102 | 120 | 85 | 94 | 78 |
P value = 0.0117 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
7P GAIN MUTATED | 5 | 10 | 0 | 3 |
7P GAIN WILD-TYPE | 160 | 135 | 119 | 66 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
7P GAIN MUTATED | 4 | 13 | 1 |
7P GAIN WILD-TYPE | 174 | 115 | 191 |
P value = 0.00214 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
7P GAIN MUTATED | 4 | 10 | 1 | 0 |
7P GAIN WILD-TYPE | 127 | 115 | 107 | 104 |
P value = 0.00089 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
7P GAIN MUTATED | 4 | 10 | 1 |
7P GAIN WILD-TYPE | 159 | 110 | 184 |
P value = 0.00657 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
7Q GAIN MUTATED | 3 | 1 | 16 |
7Q GAIN WILD-TYPE | 129 | 137 | 213 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
7Q GAIN MUTATED | 1 | 15 | 3 | 0 | 1 |
7Q GAIN WILD-TYPE | 45 | 132 | 81 | 42 | 179 |
P value = 0.0166 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
7Q GAIN MUTATED | 4 | 1 | 0 | 2 | 0 | 5 | 0 |
7Q GAIN WILD-TYPE | 42 | 27 | 33 | 27 | 47 | 22 | 9 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
7Q GAIN MUTATED | 2 | 16 | 1 | 1 |
7Q GAIN WILD-TYPE | 156 | 151 | 57 | 113 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
7Q GAIN MUTATED | 2 | 16 | 1 | 1 | 0 |
7Q GAIN WILD-TYPE | 102 | 118 | 85 | 94 | 78 |
P value = 0.00302 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
7Q GAIN MUTATED | 5 | 12 | 0 | 3 |
7Q GAIN WILD-TYPE | 160 | 133 | 119 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
7Q GAIN MUTATED | 4 | 15 | 1 |
7Q GAIN WILD-TYPE | 174 | 113 | 191 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
7Q GAIN MUTATED | 4 | 12 | 1 | 0 |
7Q GAIN WILD-TYPE | 127 | 113 | 107 | 104 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
7Q GAIN MUTATED | 4 | 12 | 1 |
7Q GAIN WILD-TYPE | 159 | 108 | 184 |
P value = 0.0412 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
8P GAIN MUTATED | 0 | 0 | 6 |
8P GAIN WILD-TYPE | 132 | 138 | 223 |
P value = 0.0413 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
11P GAIN MUTATED | 0 | 0 | 6 |
11P GAIN WILD-TYPE | 132 | 138 | 223 |
P value = 0.0467 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
11P GAIN MUTATED | 0 | 5 | 0 | 1 | 0 |
11P GAIN WILD-TYPE | 104 | 129 | 86 | 94 | 78 |
P value = 0.00165 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
11P GAIN MUTATED | 0 | 6 | 0 | 0 |
11P GAIN WILD-TYPE | 165 | 139 | 119 | 69 |
P value = 0.00685 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
11P GAIN MUTATED | 0 | 5 | 1 |
11P GAIN WILD-TYPE | 178 | 123 | 191 |
P value = 0.00555 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
11Q GAIN MUTATED | 0 | 5 | 0 | 0 |
11Q GAIN WILD-TYPE | 165 | 140 | 119 | 69 |
P value = 0.023 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
11Q GAIN MUTATED | 0 | 4 | 1 |
11Q GAIN WILD-TYPE | 178 | 124 | 191 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
12P GAIN MUTATED | 1 | 0 | 14 |
12P GAIN WILD-TYPE | 131 | 138 | 215 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
12P GAIN MUTATED | 0 | 14 | 0 | 0 | 1 |
12P GAIN WILD-TYPE | 46 | 133 | 84 | 42 | 179 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
12P GAIN MUTATED | 0 | 14 | 0 | 1 |
12P GAIN WILD-TYPE | 158 | 153 | 58 | 113 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
12P GAIN MUTATED | 0 | 14 | 0 | 1 | 0 |
12P GAIN WILD-TYPE | 104 | 120 | 86 | 94 | 78 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
12P GAIN MUTATED | 2 | 12 | 0 | 1 |
12P GAIN WILD-TYPE | 163 | 133 | 119 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
12P GAIN MUTATED | 1 | 13 | 1 |
12P GAIN WILD-TYPE | 177 | 115 | 191 |
P value = 0.00022 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
12P GAIN MUTATED | 1 | 10 | 1 | 0 |
12P GAIN WILD-TYPE | 130 | 115 | 107 | 104 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
12P GAIN MUTATED | 1 | 10 | 1 |
12P GAIN WILD-TYPE | 162 | 110 | 184 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
12Q GAIN MUTATED | 1 | 0 | 14 |
12Q GAIN WILD-TYPE | 131 | 138 | 215 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
12Q GAIN MUTATED | 0 | 14 | 0 | 0 | 1 |
12Q GAIN WILD-TYPE | 46 | 133 | 84 | 42 | 179 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
12Q GAIN MUTATED | 0 | 14 | 0 | 1 |
12Q GAIN WILD-TYPE | 158 | 153 | 58 | 113 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
12Q GAIN MUTATED | 0 | 14 | 0 | 1 | 0 |
12Q GAIN WILD-TYPE | 104 | 120 | 86 | 94 | 78 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
12Q GAIN MUTATED | 2 | 12 | 0 | 1 |
12Q GAIN WILD-TYPE | 163 | 133 | 119 | 68 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
12Q GAIN MUTATED | 1 | 13 | 1 |
12Q GAIN WILD-TYPE | 177 | 115 | 191 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
12Q GAIN MUTATED | 1 | 10 | 1 | 0 |
12Q GAIN WILD-TYPE | 130 | 115 | 107 | 104 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
12Q GAIN MUTATED | 1 | 10 | 1 |
12Q GAIN WILD-TYPE | 162 | 110 | 184 |
P value = 0.00089 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
14Q GAIN MUTATED | 0 | 0 | 11 |
14Q GAIN WILD-TYPE | 132 | 138 | 218 |
P value = 0.00043 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
14Q GAIN MUTATED | 1 | 10 | 0 | 0 | 0 |
14Q GAIN WILD-TYPE | 45 | 137 | 84 | 42 | 180 |
P value = 0.00133 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
14Q GAIN MUTATED | 1 | 10 | 0 | 0 |
14Q GAIN WILD-TYPE | 157 | 157 | 58 | 114 |
P value = 0.00022 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
14Q GAIN MUTATED | 0 | 10 | 0 | 0 | 1 |
14Q GAIN WILD-TYPE | 104 | 124 | 86 | 95 | 77 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
14Q GAIN MUTATED | 2 | 9 | 0 |
14Q GAIN WILD-TYPE | 176 | 119 | 192 |
P value = 0.00119 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
14Q GAIN MUTATED | 2 | 8 | 0 | 0 |
14Q GAIN WILD-TYPE | 129 | 117 | 108 | 104 |
P value = 0.00023 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
14Q GAIN MUTATED | 2 | 8 | 0 |
14Q GAIN WILD-TYPE | 161 | 112 | 185 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
16P GAIN MUTATED | 1 | 0 | 14 |
16P GAIN WILD-TYPE | 131 | 138 | 215 |
P value = 0.00142 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
16P GAIN MUTATED | 0 | 12 | 2 | 0 | 1 |
16P GAIN WILD-TYPE | 46 | 135 | 82 | 42 | 179 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
16P GAIN MUTATED | 1 | 13 | 0 | 1 |
16P GAIN WILD-TYPE | 157 | 154 | 58 | 113 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
16P GAIN MUTATED | 1 | 13 | 0 | 1 | 0 |
16P GAIN WILD-TYPE | 103 | 121 | 86 | 94 | 78 |
P value = 0.00627 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
16P GAIN MUTATED | 3 | 10 | 0 | 2 |
16P GAIN WILD-TYPE | 162 | 135 | 119 | 67 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
16P GAIN MUTATED | 2 | 12 | 1 |
16P GAIN WILD-TYPE | 176 | 116 | 191 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
16P GAIN MUTATED | 2 | 11 | 1 | 0 |
16P GAIN WILD-TYPE | 129 | 114 | 107 | 104 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
16P GAIN MUTATED | 2 | 11 | 1 |
16P GAIN WILD-TYPE | 161 | 109 | 184 |
P value = 0.00142 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
16Q GAIN MUTATED | 1 | 0 | 12 |
16Q GAIN WILD-TYPE | 131 | 138 | 217 |
P value = 0.0071 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
16Q GAIN MUTATED | 0 | 10 | 2 | 0 | 1 |
16Q GAIN WILD-TYPE | 46 | 137 | 82 | 42 | 179 |
P value = 0.0027 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
16Q GAIN MUTATED | 1 | 11 | 0 | 1 |
16Q GAIN WILD-TYPE | 157 | 156 | 58 | 113 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
16Q GAIN MUTATED | 1 | 11 | 0 | 1 | 0 |
16Q GAIN WILD-TYPE | 103 | 123 | 86 | 94 | 78 |
P value = 0.0309 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
16Q GAIN MUTATED | 3 | 8 | 0 | 2 |
16Q GAIN WILD-TYPE | 162 | 137 | 119 | 67 |
P value = 0.00022 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
16Q GAIN MUTATED | 2 | 10 | 1 |
16Q GAIN WILD-TYPE | 176 | 118 | 191 |
P value = 0.00255 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
16Q GAIN MUTATED | 2 | 9 | 1 | 0 |
16Q GAIN WILD-TYPE | 129 | 116 | 107 | 104 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
16Q GAIN MUTATED | 2 | 9 | 1 |
16Q GAIN WILD-TYPE | 161 | 111 | 184 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
17P GAIN MUTATED | 1 | 0 | 15 |
17P GAIN WILD-TYPE | 131 | 138 | 214 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
17P GAIN MUTATED | 0 | 15 | 0 | 0 | 1 |
17P GAIN WILD-TYPE | 46 | 132 | 84 | 42 | 179 |
P value = 0.0313 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
17P GAIN MUTATED | 1 | 1 | 0 | 2 | 0 | 4 | 0 |
17P GAIN WILD-TYPE | 45 | 27 | 33 | 27 | 47 | 23 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
17P GAIN MUTATED | 0 | 15 | 0 | 1 |
17P GAIN WILD-TYPE | 158 | 152 | 58 | 113 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
17P GAIN MUTATED | 0 | 15 | 0 | 1 | 0 |
17P GAIN WILD-TYPE | 104 | 119 | 86 | 94 | 78 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
17P GAIN MUTATED | 2 | 12 | 0 | 2 |
17P GAIN WILD-TYPE | 163 | 133 | 119 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
17P GAIN MUTATED | 1 | 14 | 1 |
17P GAIN WILD-TYPE | 177 | 114 | 191 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
17P GAIN MUTATED | 1 | 11 | 1 | 0 |
17P GAIN WILD-TYPE | 130 | 114 | 107 | 104 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
17P GAIN MUTATED | 1 | 11 | 1 |
17P GAIN WILD-TYPE | 162 | 109 | 184 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
17Q GAIN MUTATED | 2 | 0 | 16 |
17Q GAIN WILD-TYPE | 130 | 138 | 213 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
17Q GAIN MUTATED | 1 | 16 | 0 | 0 | 1 |
17Q GAIN WILD-TYPE | 45 | 131 | 84 | 42 | 179 |
P value = 0.017 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 46 | 28 | 33 | 29 | 47 | 27 | 9 |
17Q GAIN MUTATED | 1 | 1 | 0 | 3 | 0 | 4 | 0 |
17Q GAIN WILD-TYPE | 45 | 27 | 33 | 26 | 47 | 23 | 9 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
17Q GAIN MUTATED | 1 | 16 | 0 | 1 |
17Q GAIN WILD-TYPE | 157 | 151 | 58 | 113 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
17Q GAIN MUTATED | 1 | 16 | 0 | 1 | 0 |
17Q GAIN WILD-TYPE | 103 | 118 | 86 | 94 | 78 |
P value = 0.00047 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
17Q GAIN MUTATED | 3 | 13 | 0 | 2 |
17Q GAIN WILD-TYPE | 162 | 132 | 119 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
17Q GAIN MUTATED | 2 | 15 | 1 |
17Q GAIN WILD-TYPE | 176 | 113 | 191 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
17Q GAIN MUTATED | 2 | 12 | 1 | 0 |
17Q GAIN WILD-TYPE | 129 | 113 | 107 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
17Q GAIN MUTATED | 2 | 12 | 1 |
17Q GAIN WILD-TYPE | 161 | 108 | 184 |
P value = 0.00765 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
19P GAIN MUTATED | 0 | 0 | 8 |
19P GAIN WILD-TYPE | 132 | 138 | 221 |
P value = 0.012 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
19P GAIN MUTATED | 0 | 7 | 1 | 0 | 0 |
19P GAIN WILD-TYPE | 46 | 140 | 83 | 42 | 180 |
P value = 0.00149 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
19P GAIN MUTATED | 0 | 8 | 0 | 0 |
19P GAIN WILD-TYPE | 158 | 159 | 58 | 114 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
19P GAIN MUTATED | 0 | 8 | 0 | 0 | 0 |
19P GAIN WILD-TYPE | 104 | 126 | 86 | 95 | 78 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
19P GAIN MUTATED | 0 | 8 | 0 |
19P GAIN WILD-TYPE | 178 | 120 | 192 |
P value = 0.00098 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
19P GAIN MUTATED | 0 | 5 | 0 |
19P GAIN WILD-TYPE | 163 | 115 | 185 |
P value = 0.012 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
19Q GAIN MUTATED | 1 | 0 | 9 |
19Q GAIN WILD-TYPE | 131 | 138 | 220 |
P value = 0.00195 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
19Q GAIN MUTATED | 0 | 9 | 1 | 0 | 0 |
19Q GAIN WILD-TYPE | 46 | 138 | 83 | 42 | 180 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
19Q GAIN MUTATED | 0 | 10 | 0 | 0 |
19Q GAIN WILD-TYPE | 158 | 157 | 58 | 114 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
19Q GAIN MUTATED | 0 | 10 | 0 | 0 | 0 |
19Q GAIN WILD-TYPE | 104 | 124 | 86 | 95 | 78 |
P value = 0.00913 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
19Q GAIN MUTATED | 1 | 7 | 0 | 2 |
19Q GAIN WILD-TYPE | 164 | 138 | 119 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
19Q GAIN MUTATED | 0 | 10 | 0 |
19Q GAIN WILD-TYPE | 178 | 118 | 192 |
P value = 0.00443 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
19Q GAIN MUTATED | 1 | 6 | 0 | 0 |
19Q GAIN WILD-TYPE | 130 | 119 | 108 | 104 |
P value = 9e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
19Q GAIN MUTATED | 0 | 7 | 0 |
19Q GAIN WILD-TYPE | 163 | 113 | 185 |
P value = 0.0039 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
20P GAIN MUTATED | 1 | 0 | 11 |
20P GAIN WILD-TYPE | 131 | 138 | 218 |
P value = 0.0176 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
20P GAIN MUTATED | 0 | 9 | 2 | 0 | 1 |
20P GAIN WILD-TYPE | 46 | 138 | 82 | 42 | 179 |
P value = 0.00692 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
20P GAIN MUTATED | 1 | 10 | 0 | 1 |
20P GAIN WILD-TYPE | 157 | 157 | 58 | 113 |
P value = 0.00088 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
20P GAIN MUTATED | 1 | 10 | 0 | 1 | 0 |
20P GAIN WILD-TYPE | 103 | 124 | 86 | 94 | 78 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
20P GAIN MUTATED | 2 | 9 | 1 |
20P GAIN WILD-TYPE | 176 | 119 | 191 |
P value = 0.02 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
20P GAIN MUTATED | 2 | 6 | 1 |
20P GAIN WILD-TYPE | 161 | 114 | 184 |
P value = 0.00403 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
20Q GAIN MUTATED | 1 | 0 | 11 |
20Q GAIN WILD-TYPE | 131 | 138 | 218 |
P value = 0.0165 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
20Q GAIN MUTATED | 0 | 9 | 2 | 0 | 1 |
20Q GAIN WILD-TYPE | 46 | 138 | 82 | 42 | 179 |
P value = 0.0073 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
20Q GAIN MUTATED | 1 | 10 | 0 | 1 |
20Q GAIN WILD-TYPE | 157 | 157 | 58 | 113 |
P value = 0.00109 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
20Q GAIN MUTATED | 1 | 10 | 0 | 1 | 0 |
20Q GAIN WILD-TYPE | 103 | 124 | 86 | 94 | 78 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
20Q GAIN MUTATED | 2 | 9 | 1 |
20Q GAIN WILD-TYPE | 176 | 119 | 191 |
P value = 0.0196 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
20Q GAIN MUTATED | 2 | 6 | 1 |
20Q GAIN WILD-TYPE | 161 | 114 | 184 |
P value = 0.0299 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
XP GAIN MUTATED | 0 | 6 | 2 | 0 | 0 |
XP GAIN WILD-TYPE | 46 | 141 | 82 | 42 | 180 |
P value = 0.0294 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
XQ GAIN MUTATED | 0 | 6 | 1 | 0 | 0 |
XQ GAIN WILD-TYPE | 46 | 141 | 83 | 42 | 180 |
P value = 0.0471 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
XQ GAIN MUTATED | 1 | 6 | 0 | 0 |
XQ GAIN WILD-TYPE | 157 | 161 | 58 | 114 |
P value = 0.018 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
XQ GAIN MUTATED | 1 | 6 | 0 | 0 | 0 |
XQ GAIN WILD-TYPE | 103 | 128 | 86 | 95 | 78 |
P value = 0.00608 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
XQ GAIN MUTATED | 2 | 5 | 0 |
XQ GAIN WILD-TYPE | 176 | 123 | 192 |
P value = 0.0157 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
XQ GAIN MUTATED | 1 | 5 | 0 | 0 |
XQ GAIN WILD-TYPE | 130 | 120 | 108 | 104 |
P value = 0.0259 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
XQ GAIN MUTATED | 2 | 4 | 0 |
XQ GAIN WILD-TYPE | 161 | 116 | 185 |
P value = 0.0412 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
1P LOSS MUTATED | 1 | 3 | 0 |
1P LOSS WILD-TYPE | 162 | 117 | 185 |
P value = 0.0166 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
1Q LOSS MUTATED | 0 | 3 | 0 |
1Q LOSS WILD-TYPE | 178 | 125 | 192 |
P value = 0.0166 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
1Q LOSS MUTATED | 0 | 3 | 0 |
1Q LOSS WILD-TYPE | 163 | 117 | 185 |
P value = 0.00231 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
2P LOSS MUTATED | 0 | 0 | 10 |
2P LOSS WILD-TYPE | 132 | 138 | 219 |
P value = 0.00198 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
2P LOSS MUTATED | 0 | 9 | 1 | 0 | 0 |
2P LOSS WILD-TYPE | 46 | 138 | 83 | 42 | 180 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
2P LOSS MUTATED | 0 | 10 | 0 | 0 |
2P LOSS WILD-TYPE | 158 | 157 | 58 | 114 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
2P LOSS MUTATED | 0 | 10 | 0 | 0 | 0 |
2P LOSS WILD-TYPE | 104 | 124 | 86 | 95 | 78 |
P value = 0.0134 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
2P LOSS MUTATED | 1 | 6 | 0 | 3 |
2P LOSS WILD-TYPE | 164 | 139 | 119 | 66 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
2P LOSS MUTATED | 0 | 10 | 0 |
2P LOSS WILD-TYPE | 178 | 118 | 192 |
P value = 0.00139 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
2P LOSS MUTATED | 1 | 7 | 0 | 0 |
2P LOSS WILD-TYPE | 130 | 118 | 108 | 104 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
2P LOSS MUTATED | 0 | 8 | 0 |
2P LOSS WILD-TYPE | 163 | 112 | 185 |
P value = 0.00202 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
2Q LOSS MUTATED | 0 | 0 | 10 |
2Q LOSS WILD-TYPE | 132 | 138 | 219 |
P value = 0.00168 (Fisher's exact test), Q value = 0.0082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
2Q LOSS MUTATED | 0 | 9 | 1 | 0 | 0 |
2Q LOSS WILD-TYPE | 46 | 138 | 83 | 42 | 180 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
2Q LOSS MUTATED | 0 | 10 | 0 | 0 |
2Q LOSS WILD-TYPE | 158 | 157 | 58 | 114 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
2Q LOSS MUTATED | 0 | 10 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 104 | 124 | 86 | 95 | 78 |
P value = 0.0136 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
2Q LOSS MUTATED | 1 | 6 | 0 | 3 |
2Q LOSS WILD-TYPE | 164 | 139 | 119 | 66 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
2Q LOSS MUTATED | 0 | 10 | 0 |
2Q LOSS WILD-TYPE | 178 | 118 | 192 |
P value = 0.0013 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
2Q LOSS MUTATED | 1 | 7 | 0 | 0 |
2Q LOSS WILD-TYPE | 130 | 118 | 108 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
2Q LOSS MUTATED | 0 | 8 | 0 |
2Q LOSS WILD-TYPE | 163 | 112 | 185 |
P value = 0.0164 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
3P LOSS MUTATED | 0 | 3 | 0 |
3P LOSS WILD-TYPE | 178 | 125 | 192 |
P value = 0.0168 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
3P LOSS MUTATED | 0 | 3 | 0 |
3P LOSS WILD-TYPE | 163 | 117 | 185 |
P value = 0.048 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
3Q LOSS MUTATED | 0 | 4 | 0 | 0 | 0 |
3Q LOSS WILD-TYPE | 104 | 130 | 86 | 95 | 78 |
P value = 0.00409 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
3Q LOSS MUTATED | 0 | 4 | 0 |
3Q LOSS WILD-TYPE | 178 | 124 | 192 |
P value = 0.00411 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
3Q LOSS MUTATED | 0 | 4 | 0 |
3Q LOSS WILD-TYPE | 163 | 116 | 185 |
P value = 0.0405 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
6P LOSS MUTATED | 1 | 3 | 0 |
6P LOSS WILD-TYPE | 162 | 117 | 185 |
P value = 0.0197 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
6Q LOSS MUTATED | 0 | 0 | 7 |
6Q LOSS WILD-TYPE | 132 | 138 | 222 |
P value = 0.0297 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
6Q LOSS MUTATED | 0 | 6 | 1 | 0 | 0 |
6Q LOSS WILD-TYPE | 46 | 141 | 83 | 42 | 180 |
P value = 0.047 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
6Q LOSS MUTATED | 1 | 6 | 0 | 0 |
6Q LOSS WILD-TYPE | 157 | 161 | 58 | 114 |
P value = 0.0186 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
6Q LOSS MUTATED | 1 | 6 | 0 | 0 | 0 |
6Q LOSS WILD-TYPE | 103 | 128 | 86 | 95 | 78 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
6Q LOSS MUTATED | 1 | 6 | 0 |
6Q LOSS WILD-TYPE | 177 | 122 | 192 |
P value = 0.0408 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
6Q LOSS MUTATED | 2 | 5 | 0 | 0 |
6Q LOSS WILD-TYPE | 129 | 120 | 108 | 104 |
P value = 0.00097 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
6Q LOSS MUTATED | 1 | 6 | 0 |
6Q LOSS WILD-TYPE | 162 | 114 | 185 |
P value = 0.0472 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
8P LOSS MUTATED | 0 | 4 | 0 | 0 | 0 |
8P LOSS WILD-TYPE | 104 | 130 | 86 | 95 | 78 |
P value = 0.0434 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
8P LOSS MUTATED | 0 | 2 | 0 | 2 |
8P LOSS WILD-TYPE | 165 | 143 | 119 | 67 |
P value = 0.00435 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
8P LOSS MUTATED | 0 | 4 | 0 |
8P LOSS WILD-TYPE | 178 | 124 | 192 |
P value = 0.0399 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
8P LOSS MUTATED | 0 | 3 | 0 | 0 |
8P LOSS WILD-TYPE | 131 | 122 | 108 | 104 |
P value = 0.017 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
8P LOSS MUTATED | 0 | 3 | 0 |
8P LOSS WILD-TYPE | 163 | 117 | 185 |
P value = 0.0472 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
8Q LOSS MUTATED | 0 | 4 | 0 | 0 | 0 |
8Q LOSS WILD-TYPE | 104 | 130 | 86 | 95 | 78 |
P value = 0.0418 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
8Q LOSS MUTATED | 0 | 2 | 0 | 2 |
8Q LOSS WILD-TYPE | 165 | 143 | 119 | 67 |
P value = 0.00404 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
8Q LOSS MUTATED | 0 | 4 | 0 |
8Q LOSS WILD-TYPE | 178 | 124 | 192 |
P value = 0.0417 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
8Q LOSS MUTATED | 0 | 3 | 0 | 0 |
8Q LOSS WILD-TYPE | 131 | 122 | 108 | 104 |
P value = 0.0166 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
8Q LOSS MUTATED | 0 | 3 | 0 |
8Q LOSS WILD-TYPE | 163 | 117 | 185 |
P value = 0.0242 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
9P LOSS MUTATED | 9 | 1 | 9 |
9P LOSS WILD-TYPE | 123 | 137 | 220 |
P value = 0.00842 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
9P LOSS MUTATED | 7 | 10 | 2 |
9P LOSS WILD-TYPE | 171 | 118 | 190 |
P value = 0.0173 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
9P LOSS MUTATED | 7 | 8 | 0 | 2 |
9P LOSS WILD-TYPE | 124 | 117 | 108 | 102 |
P value = 0.0252 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
9P LOSS MUTATED | 7 | 8 | 2 |
9P LOSS WILD-TYPE | 156 | 112 | 183 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
9Q LOSS MUTATED | 14 | 1 | 10 |
9Q LOSS WILD-TYPE | 118 | 137 | 219 |
P value = 0.035 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
9Q LOSS MUTATED | 4 | 11 | 6 | 0 | 4 |
9Q LOSS WILD-TYPE | 42 | 136 | 78 | 42 | 176 |
P value = 0.00745 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
9Q LOSS MUTATED | 11 | 11 | 3 |
9Q LOSS WILD-TYPE | 167 | 117 | 189 |
P value = 0.0108 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
9Q LOSS MUTATED | 11 | 9 | 1 | 2 |
9Q LOSS WILD-TYPE | 120 | 116 | 107 | 102 |
P value = 0.0171 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
9Q LOSS MUTATED | 11 | 9 | 3 |
9Q LOSS WILD-TYPE | 152 | 111 | 182 |
P value = 0.0323 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
10P LOSS MUTATED | 0 | 6 | 0 | 1 |
10P LOSS WILD-TYPE | 158 | 161 | 58 | 113 |
P value = 0.0157 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
10P LOSS MUTATED | 0 | 6 | 0 | 1 | 0 |
10P LOSS WILD-TYPE | 104 | 128 | 86 | 94 | 78 |
P value = 0.00081 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
10P LOSS MUTATED | 1 | 6 | 0 |
10P LOSS WILD-TYPE | 177 | 122 | 192 |
P value = 0.0415 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
10P LOSS MUTATED | 2 | 5 | 0 | 0 |
10P LOSS WILD-TYPE | 129 | 120 | 108 | 104 |
P value = 0.00118 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
10P LOSS MUTATED | 1 | 6 | 0 |
10P LOSS WILD-TYPE | 162 | 114 | 185 |
P value = 0.0472 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
10Q LOSS MUTATED | 0 | 5 | 0 | 1 | 0 |
10Q LOSS WILD-TYPE | 104 | 129 | 86 | 94 | 78 |
P value = 0.00424 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
10Q LOSS MUTATED | 1 | 5 | 0 |
10Q LOSS WILD-TYPE | 177 | 123 | 192 |
P value = 0.0041 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
10Q LOSS MUTATED | 1 | 5 | 0 |
10Q LOSS WILD-TYPE | 162 | 115 | 185 |
P value = 0.0299 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
11P LOSS MUTATED | 0 | 6 | 1 | 0 | 0 |
11P LOSS WILD-TYPE | 46 | 141 | 83 | 42 | 180 |
P value = 0.0145 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
11P LOSS MUTATED | 0 | 6 | 1 | 0 |
11P LOSS WILD-TYPE | 158 | 161 | 57 | 114 |
P value = 0.0185 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
11P LOSS MUTATED | 1 | 6 | 0 | 0 | 0 |
11P LOSS WILD-TYPE | 103 | 128 | 86 | 95 | 78 |
P value = 0.00093 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
11P LOSS MUTATED | 1 | 6 | 0 |
11P LOSS WILD-TYPE | 177 | 122 | 192 |
P value = 0.0413 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
11P LOSS MUTATED | 2 | 5 | 0 | 0 |
11P LOSS WILD-TYPE | 129 | 120 | 108 | 104 |
P value = 0.00139 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
11P LOSS MUTATED | 1 | 6 | 0 |
11P LOSS WILD-TYPE | 162 | 114 | 185 |
P value = 0.0155 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
11Q LOSS MUTATED | 1 | 7 | 1 | 0 | 0 |
11Q LOSS WILD-TYPE | 45 | 140 | 83 | 42 | 180 |
P value = 0.0398 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
11Q LOSS MUTATED | 1 | 7 | 1 | 0 |
11Q LOSS WILD-TYPE | 157 | 160 | 57 | 114 |
P value = 0.0189 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
11Q LOSS MUTATED | 1 | 7 | 0 | 0 | 1 |
11Q LOSS WILD-TYPE | 103 | 127 | 86 | 95 | 77 |
P value = 0.00209 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
11Q LOSS MUTATED | 1 | 7 | 1 |
11Q LOSS WILD-TYPE | 177 | 121 | 191 |
P value = 0.0119 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
11Q LOSS MUTATED | 2 | 6 | 0 | 0 |
11Q LOSS WILD-TYPE | 129 | 119 | 108 | 104 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
11Q LOSS MUTATED | 1 | 7 | 0 |
11Q LOSS WILD-TYPE | 162 | 113 | 185 |
P value = 0.0132 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
13Q LOSS MUTATED | 3 | 0 | 11 |
13Q LOSS WILD-TYPE | 129 | 138 | 218 |
P value = 0.0075 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 64 | 42 | 49 |
13Q LOSS MUTATED | 1 | 1 | 6 | 1 |
13Q LOSS WILD-TYPE | 63 | 63 | 36 | 48 |
P value = 0.0116 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
13Q LOSS MUTATED | 0 | 9 | 2 | 3 |
13Q LOSS WILD-TYPE | 158 | 158 | 56 | 111 |
P value = 0.00858 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
13Q LOSS MUTATED | 0 | 9 | 2 | 3 | 0 |
13Q LOSS WILD-TYPE | 104 | 125 | 84 | 92 | 78 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
13Q LOSS MUTATED | 0 | 9 | 5 |
13Q LOSS WILD-TYPE | 178 | 119 | 187 |
P value = 0.01 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
13Q LOSS MUTATED | 1 | 9 | 2 | 1 |
13Q LOSS WILD-TYPE | 130 | 116 | 106 | 103 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
13Q LOSS MUTATED | 0 | 9 | 4 |
13Q LOSS WILD-TYPE | 163 | 111 | 181 |
P value = 0.012 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
15Q LOSS MUTATED | 0 | 7 | 1 | 0 | 0 |
15Q LOSS WILD-TYPE | 46 | 140 | 83 | 42 | 180 |
P value = 0.00124 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
15Q LOSS MUTATED | 0 | 8 | 0 | 0 |
15Q LOSS WILD-TYPE | 158 | 159 | 58 | 114 |
P value = 0.00022 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
15Q LOSS MUTATED | 0 | 8 | 0 | 0 | 0 |
15Q LOSS WILD-TYPE | 104 | 126 | 86 | 95 | 78 |
P value = 0.014 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
15Q LOSS MUTATED | 1 | 3 | 0 | 4 |
15Q LOSS WILD-TYPE | 164 | 142 | 119 | 65 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
15Q LOSS MUTATED | 0 | 8 | 0 |
15Q LOSS WILD-TYPE | 178 | 120 | 192 |
P value = 0.0043 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
15Q LOSS MUTATED | 1 | 6 | 0 | 0 |
15Q LOSS WILD-TYPE | 130 | 119 | 108 | 104 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
15Q LOSS MUTATED | 0 | 7 | 0 |
15Q LOSS WILD-TYPE | 163 | 113 | 185 |
P value = 0.031 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
19P LOSS MUTATED | 0 | 5 | 0 | 0 | 0 |
19P LOSS WILD-TYPE | 46 | 142 | 84 | 42 | 180 |
P value = 0.0242 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
19P LOSS MUTATED | 0 | 5 | 0 | 0 |
19P LOSS WILD-TYPE | 158 | 162 | 58 | 114 |
P value = 0.0141 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
19P LOSS MUTATED | 0 | 5 | 0 | 0 | 0 |
19P LOSS WILD-TYPE | 104 | 129 | 86 | 95 | 78 |
P value = 0.0428 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
19P LOSS MUTATED | 0 | 4 | 0 | 1 |
19P LOSS WILD-TYPE | 165 | 141 | 119 | 68 |
P value = 0.00104 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
19P LOSS MUTATED | 0 | 5 | 0 |
19P LOSS WILD-TYPE | 178 | 123 | 192 |
P value = 0.00226 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
19P LOSS MUTATED | 0 | 5 | 0 | 0 |
19P LOSS WILD-TYPE | 131 | 120 | 108 | 104 |
P value = 0.00107 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
19P LOSS MUTATED | 0 | 5 | 0 |
19P LOSS WILD-TYPE | 163 | 115 | 185 |
P value = 0.0295 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
21Q LOSS MUTATED | 4 | 4 | 0 |
21Q LOSS WILD-TYPE | 174 | 124 | 192 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 132 | 138 | 229 |
22Q LOSS MUTATED | 75 | 0 | 14 |
22Q LOSS WILD-TYPE | 57 | 138 | 215 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 147 | 84 | 42 | 180 |
22Q LOSS MUTATED | 3 | 46 | 9 | 2 | 29 |
22Q LOSS WILD-TYPE | 43 | 101 | 75 | 40 | 151 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 158 | 167 | 58 | 114 |
22Q LOSS MUTATED | 8 | 47 | 8 | 26 |
22Q LOSS WILD-TYPE | 150 | 120 | 50 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 134 | 86 | 95 | 78 |
22Q LOSS MUTATED | 9 | 42 | 13 | 23 | 2 |
22Q LOSS WILD-TYPE | 95 | 92 | 73 | 72 | 76 |
P value = 0.00478 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 165 | 145 | 119 | 69 |
22Q LOSS MUTATED | 21 | 40 | 19 | 9 |
22Q LOSS WILD-TYPE | 144 | 105 | 100 | 60 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 178 | 128 | 192 |
22Q LOSS MUTATED | 21 | 40 | 28 |
22Q LOSS WILD-TYPE | 157 | 88 | 164 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 131 | 125 | 108 | 104 |
22Q LOSS MUTATED | 17 | 39 | 8 | 17 |
22Q LOSS WILD-TYPE | 114 | 86 | 100 | 87 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 120 | 185 |
22Q LOSS MUTATED | 21 | 38 | 22 |
22Q LOSS WILD-TYPE | 142 | 82 | 163 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/22511440/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/22542946/THCA-TP.transferedmergedcluster.txt
-
Number of patients = 499
-
Number of significantly arm-level cnvs = 59
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.