Clinical Features CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q22 42 (75%) 14 0.67971 0.841 0.43061 0.682 0.077239 0.397 0.48657 0.704 0.45876 0.689 0.2945 0.612 0.13004 0.451 0.18672 0.515 0.058939 0.39 0.26699 0.598 amp_2p14 28 (50%) 28 0.38398 0.652 0.087099 0.397 0.94678 0.983 0.48899 0.704 0.01367 0.292 0.079969 0.397 0.31357 0.613 0.24803 0.58 0.25227 0.587 0.36174 0.635 amp_2q13 29 (52%) 27 0.43227 0.682 0.097229 0.417 0.50509 0.711 0.48825 0.704 0.0077299 0.232 0.31619 0.614 1 1 0.66496 0.828 0.72122 0.865 0.72807 0.867 amp_3p25.1 20 (36%) 36 0.01034 0.239 0.7538 0.877 0.76173 0.877 0.054019 0.39 0.31982 0.615 0.11346 0.446 0.04227 0.379 0.065249 0.39 0.22895 0.562 0.067129 0.39 amp_3q26.2 37 (66%) 19 0.00051999 0.104 0.0056899 0.232 0.44976 0.689 0.12873 0.451 0.26236 0.598 0.15844 0.478 1 1 0.24243 0.573 0.059359 0.39 0.18443 0.513 amp_4p16.3 25 (45%) 31 0.0019 0.163 0.45644 0.689 0.7095 0.862 0.01001 0.239 0.16255 0.48 0.1872 0.515 0.73821 0.872 0.28913 0.61 0.84472 0.927 0.53187 0.729 amp_5p13.2 26 (46%) 30 0.091949 0.4 0.5445 0.737 0.23253 0.562 0.3082 0.613 0.12653 0.45 0.055629 0.39 0.26355 0.598 0.04585 0.387 0.32674 0.615 0.17524 0.496 amp_6p24.2 37 (66%) 19 0.4493 0.689 0.98023 1 0.98787 1 0.32609 0.615 0.83031 0.918 0.35565 0.63 0.72336 0.865 0.49698 0.709 0.76875 0.877 0.76761 0.877 amp_8p11.21 33 (59%) 23 0.35061 0.629 0.72727 0.867 0.14993 0.471 0.091979 0.4 0.43544 0.682 0.55669 0.749 0.68685 0.846 1 1 0.64126 0.81 0.60103 0.781 amp_8q11.23 38 (68%) 18 0.060969 0.39 0.082279 0.397 0.31168 0.613 0.20135 0.533 0.0471 0.387 0.16633 0.482 1 1 0.92229 0.975 0.73693 0.872 0.85678 0.933 amp_8q24.21 42 (75%) 14 0.01409 0.292 0.75269 0.877 0.46369 0.689 0.95213 0.987 0.21074 0.54 0.33675 0.626 0.050399 0.39 0.03258 0.377 0.059849 0.39 0.01503 0.301 amp_8q24.21 40 (71%) 16 0.0069099 0.232 0.44607 0.689 0.32543 0.615 0.64513 0.813 0.0089999 0.239 0.11774 0.446 0.061119 0.39 0.063309 0.39 0.086139 0.397 0.02215 0.319 amp_10q22.2 26 (46%) 30 0.20954 0.54 0.73194 0.869 0.3031 0.613 0.34418 0.629 0.93153 0.976 0.92515 0.976 0.35214 0.629 0.73948 0.872 0.35288 0.629 0.42789 0.681 amp_11q13.1 19 (34%) 37 0.323 0.615 0.78812 0.886 0.42236 0.677 0.2695 0.598 0.10898 0.446 0.30363 0.613 0.58232 0.77 1 1 0.51401 0.721 0.97521 1 amp_12q12 22 (39%) 34 0.23317 0.562 0.23176 0.562 0.59705 0.78 0.078629 0.397 0.31372 0.613 0.40879 0.677 0.50122 0.71 1 1 0.52895 0.729 0.95384 0.987 amp_12q15 17 (30%) 39 0.52964 0.729 0.66136 0.826 0.8312 0.918 0.70788 0.862 0.12201 0.446 0.69847 0.855 0.49708 0.709 0.16433 0.482 0.57081 0.758 0.23097 0.562 amp_13q31.3 25 (45%) 31 0.48612 0.704 0.48144 0.703 0.22755 0.562 0.38521 0.652 0.23035 0.562 0.11634 0.446 0.0071599 0.232 0.03706 0.379 0.02462 0.32 0.053399 0.39 amp_16p11.2 20 (36%) 36 0.01701 0.309 0.075479 0.397 0.0099399 0.239 0.066699 0.39 0.76603 0.877 0.072739 0.397 0.77573 0.878 0.41105 0.677 0.58452 0.771 0.20913 0.54 amp_17q12 27 (48%) 29 1 1 0.17189 0.493 0.93412 0.976 0.76368 0.877 0.32171 0.615 0.46132 0.689 0.13472 0.458 0.78304 0.883 0.49843 0.709 1 1 amp_17q25.1 32 (57%) 24 0.35326 0.629 0.12287 0.447 0.85238 0.931 0.7235 0.865 0.59997 0.781 0.30726 0.613 0.60874 0.787 0.71932 0.865 0.27776 0.602 0.66013 0.826 amp_19p13.2 19 (34%) 37 0.087419 0.397 0.35048 0.629 0.41722 0.677 0.66257 0.826 0.73309 0.869 0.32348 0.615 0.19965 0.533 0.2763 0.601 0.061059 0.39 0.27004 0.598 amp_19q12 45 (80%) 11 0.00027 0.104 0.00037 0.104 0.18471 0.513 0.24828 0.58 0.51824 0.725 0.01998 0.319 0.45676 0.689 0.5017 0.71 0.2971 0.612 0.43324 0.682 amp_20q11.21 48 (86%) 8 0.0065599 0.232 0.096529 0.417 0.1133 0.446 0.41462 0.677 0.46359 0.689 0.42298 0.677 0.081669 0.397 0.14021 0.458 0.27462 0.6 0.27477 0.6 amp_20q11.21 48 (86%) 8 0.086099 0.397 0.070399 0.395 0.0468 0.387 0.41574 0.677 0.16204 0.48 0.31717 0.614 0.15892 0.478 0.34985 0.629 0.27318 0.6 0.55808 0.749 amp_xp11.21 28 (50%) 28 0.1424 0.462 0.30782 0.613 0.18023 0.508 0.15573 0.478 0.2425 0.573 0.29903 0.612 0.03192 0.377 0.10129 0.427 0.49811 0.709 0.065339 0.39 del_1p36.21 19 (34%) 37 0.18829 0.516 0.063799 0.39 0.77502 0.878 0.89637 0.959 0.59803 0.78 0.081579 0.397 0.051339 0.39 0.02422 0.32 0.28833 0.61 0.058649 0.39 del_2q22.1 11 (20%) 45 0.29076 0.61 0.33315 0.621 0.75533 0.877 0.47273 0.695 0.17418 0.495 0.16784 0.484 0.01837 0.319 0.55384 0.747 0.45893 0.689 0.91931 0.975 del_3p14.2 37 (66%) 19 0.41924 0.677 0.56247 0.753 0.70159 0.857 0.76883 0.877 0.5034 0.711 0.47238 0.695 1 1 0.76886 0.877 0.36025 0.634 0.90113 0.959 del_3q13.31 22 (39%) 34 0.19231 0.524 0.52115 0.726 0.21748 0.555 0.12129 0.446 0.64012 0.81 0.066579 0.39 0.49868 0.709 0.45569 0.689 0.87574 0.947 0.82478 0.915 del_4q22.1 37 (66%) 19 0.03265 0.377 0.067499 0.39 0.13831 0.458 0.23781 0.571 0.11861 0.446 0.15374 0.475 0.0203 0.319 0.12556 0.45 0.0073199 0.232 0.057019 0.39 del_4q34.3 37 (66%) 19 0.03787 0.379 0.02283 0.319 0.32815 0.615 0.13486 0.458 0.04128 0.379 0.04087 0.379 0.02996 0.367 0.20111 0.533 0.0068799 0.232 0.12528 0.45 del_5q12.1 26 (46%) 30 0.20733 0.539 0.0051599 0.232 0.59389 0.778 0.15923 0.478 0.62957 0.804 0.45193 0.689 0.94216 0.98 0.29679 0.612 0.56576 0.756 0.44514 0.689 del_6q26 10 (18%) 46 0.12965 0.451 0.96346 0.995 0.04974 0.39 0.080729 0.397 0.13886 0.458 0.69707 0.855 1 1 0.29836 0.612 0.17349 0.495 0.31446 0.613 del_7q11.22 12 (21%) 44 0.54239 0.736 0.80002 0.897 0.71805 0.865 0.72108 0.865 0.8403 0.923 0.83614 0.922 0.83965 0.923 0.53146 0.729 0.064659 0.39 0.751 0.877 del_7q36.2 20 (36%) 36 0.28955 0.61 0.26823 0.598 0.72349 0.865 0.5209 0.726 0.42159 0.677 0.27493 0.6 0.090349 0.4 0.04431 0.385 0.46646 0.689 0.081579 0.397 del_8p21.3 32 (57%) 24 0.03624 0.379 0.61857 0.796 0.48925 0.704 0.28203 0.604 0.34591 0.629 0.3305 0.618 0.8848 0.953 0.28405 0.607 0.4021 0.67 0.53688 0.731 del_9p23 34 (61%) 22 0.20184 0.533 0.67007 0.832 0.0050199 0.232 0.01565 0.303 0.31006 0.613 0.32451 0.615 0.82491 0.915 0.42579 0.679 0.7692 0.877 0.12122 0.446 del_9q21.13 39 (70%) 17 0.03659 0.379 0.57151 0.758 0.7704 0.877 0.45186 0.689 0.45994 0.689 0.25736 0.592 0.75668 0.877 0.32161 0.615 0.4032 0.67 0.39914 0.667 del_9q33.3 39 (70%) 17 0.46211 0.689 0.80107 0.897 0.081579 0.397 0.041 0.379 0.22666 0.562 0.13921 0.458 0.6464 0.813 0.11307 0.446 0.37796 0.648 0.25644 0.592 del_10q23.31 20 (36%) 36 0.15917 0.478 0.1479 0.467 0.92731 0.976 0.9802 1 0.37462 0.648 0.24235 0.573 0.87917 0.949 0.85224 0.931 0.5724 0.758 0.82528 0.915 del_11q14.1 26 (46%) 30 0.04907 0.39 0.63781 0.809 0.16122 0.48 0.22831 0.562 0.8207 0.915 0.92296 0.975 0.37677 0.648 0.26488 0.598 0.19923 0.533 0.075069 0.397 del_11q23.2 26 (46%) 30 0.43703 0.683 0.93407 0.976 0.61272 0.791 0.22527 0.562 0.15093 0.472 0.87053 0.943 0.51394 0.721 0.86276 0.938 0.084419 0.397 0.35714 0.63 del_12q23.1 20 (36%) 36 0.63783 0.809 0.9427 0.98 0.1215 0.446 0.062909 0.39 0.62881 0.804 0.75051 0.877 1 1 0.33792 0.626 0.62158 0.797 0.5451 0.737 del_12q24.31 20 (36%) 36 0.60238 0.781 0.75562 0.877 0.02343 0.319 0.00166 0.163 0.19703 0.533 0.25634 0.592 0.77488 0.878 0.88844 0.954 0.23281 0.562 0.93108 0.976 del_13q12.11 30 (54%) 26 0.16452 0.482 0.14489 0.467 0.43461 0.682 0.069189 0.393 0.15338 0.475 0.20603 0.539 0.35071 0.629 0.02559 0.32 0.1268 0.45 0.061889 0.39 del_13q14.2 32 (57%) 24 0.29624 0.612 0.04014 0.379 0.22738 0.562 0.41375 0.677 0.03563 0.379 0.02041 0.319 0.30316 0.613 0.15751 0.478 0.086779 0.397 0.19343 0.525 del_14q21.1 28 (50%) 28 0.78806 0.886 0.11525 0.446 0.59164 0.777 0.1319 0.455 0.067599 0.39 0.054549 0.39 0.31307 0.613 0.3811 0.651 0.089019 0.399 0.36858 0.641 del_15q15.1 43 (77%) 13 0.16556 0.482 0.02275 0.319 0.44677 0.689 0.03955 0.379 0.39817 0.667 0.77064 0.877 0.071169 0.395 0.34733 0.629 0.1155 0.446 0.20649 0.539 del_16p13.3 33 (59%) 23 0.42057 0.677 0.63111 0.804 0.70804 0.862 0.26292 0.598 0.36635 0.639 0.23014 0.562 0.01631 0.306 0.38846 0.655 0.67852 0.841 0.71617 0.865 del_16q23.1 39 (70%) 17 0.20658 0.539 0.13963 0.458 0.46285 0.689 0.2793 0.603 0.68155 0.841 0.3934 0.661 0.30047 0.613 0.81414 0.91 0.93491 0.976 0.6212 0.797 del_17p13.1 42 (75%) 14 0.28572 0.608 0.04422 0.385 0.12987 0.451 0.23896 0.571 0.04688 0.387 0.42338 0.677 0.1081 0.446 0.18162 0.509 0.00487 0.232 0.083719 0.397 del_17q21.31 27 (48%) 29 0.36352 0.636 0.063059 0.39 0.52463 0.729 0.091449 0.4 0.29681 0.612 0.34743 0.629 0.31407 0.613 0.084999 0.397 0.056449 0.39 0.14059 0.458 del_18q22.2 26 (46%) 30 0.14742 0.467 0.52656 0.729 0.43566 0.682 0.53731 0.731 0.45754 0.689 0.35718 0.63 0.0064999 0.232 0.077129 0.397 0.0093399 0.239 0.02531 0.32 del_19p13.3 47 (84%) 9 0.13798 0.458 0.04166 0.379 0.42165 0.677 0.12124 0.446 0.12046 0.446 0.37789 0.648 0.081699 0.397 0.084569 0.397 0.0401 0.379 0.11383 0.446 del_19p13.3 44 (79%) 12 0.10052 0.427 0.1025 0.427 0.13748 0.458 0.10253 0.427 0.0073699 0.232 0.088649 0.399 0.00285 0.214 0.0092299 0.239 0.00141 0.163 0.02151 0.319 del_19q13.33 17 (30%) 39 0.11353 0.446 0.02308 0.319 0.24654 0.58 0.063609 0.39 0.00182 0.163 0.03535 0.379 0.28122 0.604 0.03821 0.379 0.14699 0.467 0.01261 0.28 del_20p12.1 9 (16%) 47 0.53412 0.73 0.69706 0.855 0.074699 0.397 0.02036 0.319 0.42004 0.677 0.52766 0.729 0.26898 0.598 0.34237 0.629 0.76568 0.877 0.4658 0.689 del_22q13.31 40 (71%) 16 0.48504 0.704 0.37157 0.644 0.11454 0.446 0.30712 0.613 0.48065 0.703 0.45798 0.689 1 1 0.35143 0.629 0.97411 1 0.58774 0.773 del_xp21.1 18 (32%) 38 0.38347 0.652 0.6594 0.826 0.91235 0.969 0.89502 0.959 0.88594 0.953 0.86795 0.942 1 1 1 1 0.85375 0.931 0.9008 0.959 del_xq25 23 (41%) 33 0.78301 0.883 0.21903 0.557 0.26499 0.598 0.069449 0.393 0.14684 0.467 0.89815 0.959 0.48163 0.703 0.56708 0.756 0.11993 0.446 0.38593 0.652