tcga_participant_barcode CLI_years_to_birth CLI_vital_status CLI_days_to_death CLI_days_to_last_followup CLI_tumor_tissue_site CLI_pathologic_stage CLI_pathology_T_stage CLI_pathology_N_stage CLI_pathology_M_stage CLI_gender CLI_date_of_initial_pathologic_diagnosis CLI_radiation_therapy CLI_race CLI_ethnicity CLUS_CN_cNMF CLUS_Methlyation_cNMF CLUS_mRNAseq_cNMF CLUS_mRNAseq_cHierarchical CLUS_miRseq_cNMF CLUS_miRseq_cHierarchical CLUS_miRseq_Mature_cNMF CLUS_miRseq_Mature_cHierarchical SMG_mutsig2.0_BAP1 SMG_mutsig2.0_CYSLTR2 SMG_mutsig2.0_EIF1AX SMG_mutsig2.0_GNA11 SMG_mutsig2.0_GNAQ SMG_mutsig2.0_RAB38_cosmic SMG_mutsig2.0_RGAG4_cosmic SMG_mutsig2.0_SF3B1 SMG_mutsig.CV_BAP1 SMG_mutsig.CV_EIF1AX SMG_mutsig.CV_GNA11 SMG_mutsig.CV_GNAQ SMG_mutsig.CV_RAB38_cosmic SMG_mutsig.CV_RGAG4_cosmic SMG_mutsig.2CV_BAP1 SMG_mutsig.2CV_CYSLTR2 SMG_mutsig.2CV_EIF1AX SMG_mutsig.2CV_GNA11 SMG_mutsig.2CV_GNAQ SMG_mutsig.2CV_RAB38_cosmic SMG_mutsig.2CV_RGAG4_cosmic SMG_mutsig.2CV_SF3B1 rate_non rate_sil MutsigCateg_*CpG->T MutsigCateg_Gp*Cp(A/C/T)->T MutsigCateg_(A/C/T)p*Cp(A/C/T)->T MutsigCateg_A->G MutsigCateg_transver SMG_BAP1_mRNA SMG_CYSLTR2_mRNA SMG_EIF1AX_mRNA SMG_GNA11_mRNA SMG_GNAQ_mRNA SMG_RAB38_mRNA SMG_RGAG4_mRNA SMG_SF3B1_mRNA Amp_6p24.3 Amp_8q24.22 Amp_17q25.3 Del_1p36.12 Del_1p12 Del_2q37.2 Del_3p25.2 Del_3p25.1 Del_3p22.2 Del_3p14.2 Del_3q24 Del_3q29 Del_6q25.2 Del_6q27 Del_8p11.22 Del_11p15.1 Del_11q24.3 Del_16q12.1 Del_16q23.3 Del_16q24.3 Del_17q12 CN_10p_Amp CN_10q_Amp CN_11p_Amp CN_11q_Amp CN_12p_Amp CN_12q_Amp CN_13q_Amp CN_14q_Amp CN_15q_Amp CN_16p_Amp CN_16q_Amp CN_17p_Amp CN_17q_Amp CN_18p_Amp CN_18q_Amp CN_19p_Amp CN_19q_Amp CN_1p_Amp CN_1q_Amp CN_20p_Amp CN_20q_Amp CN_21q_Amp CN_22q_Amp CN_2p_Amp CN_2q_Amp CN_3p_Amp CN_3q_Amp CN_4p_Amp CN_4q_Amp CN_5p_Amp CN_5q_Amp CN_6p_Amp CN_6q_Amp CN_7p_Amp CN_7q_Amp CN_8p_Amp CN_8q_Amp CN_9p_Amp CN_9q_Amp CN_Xp_Amp CN_Xq_Amp CN_10p_Del CN_10q_Del CN_11p_Del CN_11q_Del CN_12p_Del CN_12q_Del CN_13q_Del CN_14q_Del CN_15q_Del CN_16p_Del CN_16q_Del CN_17p_Del CN_17q_Del CN_18p_Del CN_18q_Del CN_19p_Del CN_19q_Del CN_1p_Del CN_1q_Del CN_20p_Del CN_20q_Del CN_21q_Del CN_22q_Del CN_2p_Del CN_2q_Del CN_3p_Del CN_3q_Del CN_4p_Del CN_4q_Del CN_5p_Del CN_5q_Del CN_6p_Del CN_6q_Del CN_7p_Del CN_7q_Del CN_8p_Del CN_8q_Del CN_9p_Del CN_9q_Del CN_Xp_Del CN_Xq_Del mRNA_CNMF_ANKRD30B_3.61_1 mRNA_CNMF_H1FX_-1.36_1 mRNA_CNMF_IRF6_-2.57_1 mRNA_CNMF_LOC401052_-1.42_1 mRNA_CNMF_PARP3_-0.85_1 mRNA_CNMF_LIMS2_-2.29_1 mRNA_CNMF_VAV2_0.86_1 mRNA_CNMF_GAB1_0.85_1 mRNA_CNMF_CADM1_2.19_1 mRNA_CNMF_APLP2_0.7_1 mRNA_CNMF_CLIP3_1.87_2 mRNA_CNMF_CSDC2_4.24_2 mRNA_CNMF_VAT1L_5.28_2 mRNA_CNMF_C1QL1_2.59_2 mRNA_CNMF_CRABP1_5.93_2 mRNA_CNMF_AGBL2_-1.3_2 mRNA_CNMF_ELL2_-1.02_2 mRNA_CNMF_FAM103A1_-0.4_2 mRNA_CNMF_RPS10P7_-0.58_2 mRNA_CNMF_SLC35D2_0.51_3 mRNA_CNMF_FAM189A2_0.82_3 mRNA_CNMF_SASH3_-1.58_3 mRNA_CNMF_MPRIP_0.62_3 mRNA_CNMF_CCDC90A_0.46_3 mRNA_CNMF_JDP2_-0.55_3 mRNA_CNMF_TMEM163_-1.49_3 mRNA_CNMF_RABL2B_0.44_3 mRNA_CNMF_BIN2_-1.71_3 mRNA_CNMF_HLCS_-0.7_3 mRNA_CNMF_CD52_3.16_4 mRNA_CNMF_ATPIF1_0.71_4 mRNA_CNMF_LY9_3.46_4 mRNA_CNMF_UBASH3A_3.5_4 mRNA_CNMF_PSMB10_1.27_4 mRNA_CNMF_EPPK1_-1.87_4 mRNA_CNMF_PERP_-2.03_4 mRNA_CNMF_CPS1_-4.08_4 mRNA_CNMF_WDR90_-0.55_4 mRNA_CNMF_TSPAN14_-0.8_4 Amp_ASPSCR1_17q25.3_mRNA Amp_BPTF_17q25.3_mRNA Amp_BRIP1_17q25.3_mRNA Amp_CANT1_17q25.3_mRNA Amp_CBX8_17q25.3_mRNA Amp_CD79B_17q25.3_mRNA Amp_CLTC_17q25.3_mRNA Amp_DDX5_17q25.3_mRNA Amp_DEK_6p24.3_mRNA Amp_EXT1_8q24.22_mRNA Amp_FOXK2_17q25.3_mRNA Amp_H3F3B_17q25.3_mRNA Amp_HLF_17q25.3_mRNA Amp_IRF4_6p24.3_mRNA Amp_MSI2_17q25.3_mRNA Amp_MYC_8q24.22_mRNA Amp_NDRG1_8q24.22_mRNA Amp_NEDD9_6p24.3_mRNA Amp_PARP10_8q24.22_mRNA Amp_PRKAR1A_17q25.3_mRNA Amp_RAD21_8q24.22_mRNA Amp_RECQL4_8q24.22_mRNA Amp_RNF43_17q25.3_mRNA Amp_TUBD1_17q25.3_mRNA Del_ARHGEF12_11q24.3_mRNA Del_BRCA1_17q12_mRNA Del_CBFA2T3_16q24.3_mRNA Del_CBL_11q24.3_mRNA Del_CDK12_17q12_mRNA Del_COL1A1_17q12_mRNA Del_DDX6_11q24.3_mRNA Del_ERBB2_17q12_mRNA Del_ETV4_17q12_mRNA Del_FAM46C_1p12_mRNA Del_FANCA_16q24.3_mRNA Del_FHIT_3p14.2_mRNA Del_FLI1_11q24.3_mRNA Del_KCNJ5_11q24.3_mRNA Del_LASP1_17q12_mRNA Del_MDS2_1p36.12_mRNA Del_MLLT6_17q12_mRNA Del_NF1_17q12_mRNA Del_PAFAH1B2_11q24.3_mRNA Del_PCSK7_11q24.3_mRNA Del_RARA_17q12_mRNA Del_SMARCE1_17q12_mRNA Del_STAT3_17q12_mRNA Del_STAT5B_17q12_mRNA Del_SUZ12_17q12_mRNA Del_TAF15_17q12_mRNA TCGA-RZ-AB0B 47 1 149 NA choroid stage iv t4b NA m1 female 2013 NA white NA 1 1 1 1 1 1 1 1 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 5.202077e-07 1.040415e-07 33.3333333333333 0 11.1111111111111 5.55555555555556 50 10.809518 6.825035 10.463161 9.447417 10.907520 12.228911 7.175277 12.304706 0.0042065 2.8747000 0.0351000 -0.4686500 -0.4686500 -0.0033243 -0.9068400 -0.9068400 -0.8882700 -0.8882700 -0.8882700 -0.8927100 0.0102850 0.0102850 0.1386500 -0.0111980 -0.0119460 -0.3149400 -0.3092100 -0.3192800 0.0351000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.188 -0.315 0.000 0.000 0.000 0.000 0.000 0.000 0.150 0.618 0.000 0.000 0.000 0.000 0.000 0.000 -0.888 -0.888 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.139 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.188 -0.315 0.000 0.000 0.000 0.000 0.000 0.000 0.150 0.618 0.000 0.000 0.000 0.000 0.000 0.000 -0.888 -0.888 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.139 0.139 0.000 0.000 0.000 0.000 8.844400 8.983360 2.731053 3.554184 7.440010 7.910203 11.623076 11.041497 10.153447 14.132267 9.771235 4.554184 7.538414 6.569778 8.325240 3.118077 7.052987 7.585208 7.215494 9.738841 9.424010 5.569777 11.744006 8.420788 8.187966 1.030619 7.376290 4.585209 9.491075 4.703045 10.309649 2.490057 1.352533 10.651297 4.240070 10.468891 3.278550 8.818522 12.682568 9.860342 10.721927 4.278550 10.083866 8.530465 8.932994 13.488962 13.237634 10.526474 10.777134 11.162798 12.780593 5.674475 11.173045 9.527473 12.064902 13.343573 7.254620 12.183855 13.296088 13.122714 8.902524 4.316023 6.096709 11.821375 6.907136 4.422939 9.731926 10.426689 10.604266 12.092328 10.248577 8.704811 5.440009 6.572103 7.024972 7.600475 3.554184 11.573409 NA 11.289480 11.169851 8.744865 10.060300 9.892482 11.048819 12.152476 10.888211 9.107435 11.925248 TCGA-V3-A9ZX 56 0 NA 470 choroid stage iib t2b nx mx male 2013 no white not hispanic or latino 2 1 2 1 2 1 2 1 5 0 0 4 0 0 0 0 5 0 4 0 0 0 5 0 0 4 0 0 0 0 2.080831e-07 6.936103e-08 12.5 12.5 12.5 0 62.5 9.532983 10.579187 10.128577 9.384769 10.362124 13.186962 6.839462 12.007277 0.63074000 2.80950000 -0.00983830 -0.00097017 -0.00097017 0.02927400 -0.78446000 -0.78446000 -0.78446000 -0.78446000 -0.78446000 -0.78446000 -0.67417000 -0.67417000 -0.81474000 -0.01587900 -0.01587900 -0.70747000 -0.70747000 -0.70747000 -0.00983830 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.707 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.784 -0.784 0.000 0.000 0.000 0.000 0.631 -0.674 0.000 0.000 2.056 2.871 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.707 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.784 -0.784 0.000 0.000 0.000 0.000 0.631 -0.674 0.000 0.000 2.056 2.871 0.000 0.000 0.000 0.000 5.558369 9.475289 2.591536 2.302027 8.029949 8.757812 11.267492 10.122917 10.293235 13.715774 10.362724 5.176498 9.416349 6.694345 9.448385 2.832546 7.524421 7.659581 6.187386 10.175814 10.119368 8.763280 11.564906 9.043495 7.541495 2.717057 7.573429 6.886991 9.165527 6.549956 10.992415 4.886989 5.176498 11.025026 3.038998 7.316979 2.939452 8.570895 11.870407 9.886156 10.781809 4.804529 10.576601 8.587431 10.928549 13.581123 13.013122 10.709060 11.067637 11.121143 12.770766 6.739434 11.916125 9.073151 12.627084 13.332926 7.996290 12.777762 12.687292 13.177692 9.348849 7.471953 6.866813 11.621951 8.228529 4.302027 9.239321 10.510398 10.874413 12.141757 10.676585 9.350061 5.990084 6.465795 7.026922 7.176497 3.038998 11.953080 NA 11.224861 10.725961 8.545731 9.989276 9.522273 10.812463 12.349758 10.946686 9.103647 11.990667 TCGA-V3-A9ZY 54 0 NA 459 choroid stage iib t3a nx mx male 2013 no white not hispanic or latino 1 2 3 2 3 2 3 2 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 5.202077e-07 1.734026e-07 35 0 15 20 30 12.2660684 -0.4542293 8.6930290 10.1878759 9.5542527 12.7654464 7.8032122 10.5833711 0.9942600 -0.0058140 0.0126550 -0.0013858 -0.0013858 0.0225850 -0.0091286 -0.0091286 -0.0091286 -0.0112660 -0.0112660 -0.0112660 0.9955100 0.9955100 -0.0058140 0.0019418 0.0019418 0.0200630 0.0200630 0.0200630 0.0126550 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.953 0.953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.953 0.953 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.1307991 12.1713047 6.5792465 5.4284674 8.8587071 12.2107158 9.8090933 8.8196197 6.7552775 12.6422098 9.1289068 1.1307991 2.5458201 5.9033758 1.5458201 3.7157506 7.6904820 7.9455931 6.6751074 11.0854676 10.8784202 6.3402400 12.9899331 8.4100103 7.9678891 0.5458696 8.1156799 4.3007095 8.1232528 5.1896823 9.7770453 1.5458201 1.5458201 10.4413993 4.9720906 9.9970352 8.4971089 8.8587071 12.9958754 10.764993 10.345106 2.353182 10.726355 8.957335 9.104245 11.843600 12.266923 9.318963 9.423875 11.347532 12.615945 6.160533 10.839296 7.452715 12.407493 11.588851 9.921950 11.117577 12.157310 9.733176 7.189680 7.595673 5.715748 10.955745 5.695571 4.189682 9.656960 9.548639 8.253183 11.298623 10.835843 9.827754 3.005256 6.315860 8.781838 6.204035 4.130783 12.633453 NA 11.339834 9.706956 7.092719 9.795530 10.935455 10.148523 11.786019 10.785423 7.287291 12.417344 TCGA-V4-A9E5 51 0 NA 2499 choroid stage iiib t4b n0 m0 female 2008 no white not hispanic or latino 1 3 3 2 4 3 3 2 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 4 0 0 4 2.774441e-07 6.936103e-08 28.5714285714286 0 0 21.4285714285714 50 12.5741812 0.6643008 9.4732522 9.8254199 9.8114930 13.7043209 6.9496902 9.7504243 1.985300 0.955910 0.066778 0.091880 -0.018216 -0.012091 -0.029763 -0.029763 -0.029763 -0.029763 -0.057654 -0.044957 0.961650 0.961650 0.954370 0.997790 1.030800 -0.931860 -1.054100 -1.125300 0.066778 0.000 0.000 0.998 0.998 0.000 0.000 0.000 0.000 0.000 -0.139 -1.293 0.000 0.000 0.000 0.000 0.102 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.947 0.947 0.000 0.000 1.985 0.909 0.000 0.000 0.954 0.954 0.000 0.000 0.195 0.195 0.000 0.000 0.998 0.998 0.000 0.000 0.000 0.000 0.000 -0.139 -1.293 0.000 0.000 0.000 0.000 0.102 0.102 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.947 0.947 0.000 0.000 1.985 0.909 0.000 0.000 0.954 0.954 0.000 0.000 0.195 0.195 0.6643008 11.9459284 6.8140351 5.9496913 9.1661252 12.5121284 10.1061948 10.4521907 5.2188780 14.0267799 7.6977113 6.4456473 6.0905528 5.7517502 7.3224996 4.8342106 8.1481038 8.0041379 6.9216755 10.5300214 11.6203012 5.7086811 13.2556936 8.5950254 7.2417172 -0.3356992 8.4051819 2.2492633 7.5591055 5.5469315 9.7004617 0.6643008 2.6642780 9.3472827 5.5469315 9.8051178 9.3785335 9.9850887 13.6642000 10.8398377 9.8241594 0.6643008 11.0245865 8.9404126 8.1561412 11.5560718 11.4398984 9.4191756 10.3269565 11.1671199 12.8831540 4.9496890 10.1700997 7.9263832 12.0091388 13.7614149 11.7600148 11.6582879 12.8339000 10.7636359 8.3153398 8.2111826 3.8342157 10.644428 5.249252 2.986211 9.264201 9.568170 8.801279 10.921086 11.755062 10.244547 5.571179 5.918277 9.514475 3.664289 4.834211 12.610463 NA 11.044208 9.277156 6.606802 11.092308 10.267914 9.781931 10.669913 10.817207 7.047992 13.064901 TCGA-V4-A9E7 76 1 415 NA choroid stage iiia t4a n0 m0 male 2011 no white NA 2 1 1 1 5 4 1 3 5 0 0 0 4 0 0 0 5 0 0 4 0 0 5 0 0 0 4 0 0 0 4.508467e-07 1.040415e-07 31.25 12.5 18.75 6.25 31.25 10.301424 NA 9.368538 9.542066 10.341007 13.286725 7.512990 11.460957 0.010982 2.609800 -0.065313 -1.044400 0.014190 -0.076984 -1.012500 -1.012500 -1.012500 -1.010800 -0.994050 -0.994050 -0.898780 -0.971240 -1.046800 -0.025483 -0.025483 -0.946520 -0.963650 -1.009300 -0.048748 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.864 0.000 0.000 0.000 0.000 0.000 0.000 -0.999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.994 -0.994 1.077 0.101 0.000 0.000 0.000 -0.899 0.000 0.000 0.144 1.190 0.000 0.000 -0.237 -0.237 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.864 0.000 0.000 0.000 0.000 0.000 0.000 -0.999 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.994 -0.994 1.077 0.101 0.000 0.000 0.000 -0.899 0.000 0.000 0.144 1.190 0.000 0.000 -0.237 -0.237 6.7266283 10.3317124 0.2508403 4.2508934 8.6389123 7.8508075 11.0057824 9.4688525 8.9055308 13.6562358 10.6745360 0.2508403 0.2508403 6.5270187 3.0582472 3.7103271 6.7427473 7.5082829 6.4892989 10.0590547 10.1890042 3.5728169 12.0634733 8.5773242 8.2565196 NA 8.1304779 1.5728412 8.9180063 2.9513267 10.4208199 1.8358432 NA 9.6528410 3.0582472 6.5270187 2.0582472 8.8358575 12.1513843 10.998668 10.495259 4.295290 10.273263 8.782276 10.108876 12.790902 12.914786 9.955663 10.713908 11.044905 12.801882 1.572841 12.140209 8.677160 12.756334 12.758318 8.658163 12.216499 12.462023 12.285692 9.470063 5.083784 5.479712 11.4727840 7.5996228 2.8358635 9.4566881 10.0032755 6.3061766 12.0047383 10.6860442 9.2466620 2.9513267 6.6624904 7.3646372 5.6602869 2.7103271 12.2272800 -0.7490384 11.2134294 10.6356786 7.5082829 9.6378459 10.8264341 10.8216993 11.5446538 11.0774434 8.1057634 12.2487800 TCGA-V4-A9E8 49 1 808 NA choroid stage iiia t4a n0 m0 male 2011 no white not hispanic or latino 3 4 4 1 5 3 1 4 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 4.161662e-07 1.387221e-07 12.5 6.25 18.75 18.75 43.75 8.645282 9.330017 8.173328 9.307684 8.923083 13.597753 8.217124 10.605556 0.766960 0.741210 0.602570 -0.108240 -0.023018 0.326900 -0.444800 -0.444800 -0.427240 -0.427240 -0.415970 -0.415970 -0.861610 -0.861610 0.727540 0.311680 0.308730 -0.096704 -0.096704 -0.096704 0.639380 0.000 0.000 0.312 0.312 0.000 0.000 0.759 0.730 0.000 0.000 0.000 0.618 0.618 0.000 0.000 -0.126 -0.126 0.000 0.000 0.985 0.985 1.080 -0.491 0.327 0.327 -0.427 -0.427 0.000 0.000 0.000 0.000 0.767 -0.862 0.000 0.000 0.796 0.796 0.000 0.000 0.000 0.000 0.000 0.000 0.312 0.312 0.000 0.000 0.759 0.730 0.000 0.000 0.000 0.618 0.618 0.000 0.000 -0.126 -0.126 0.000 0.000 0.985 0.985 1.080 -0.491 0.327 0.327 -0.427 -0.427 0.000 0.000 0.000 0.000 0.767 -0.862 0.000 0.000 0.796 0.796 0.000 0.000 0.000 0.000 -0.01654119 10.49129835 0.98353178 3.68394343 9.15092188 10.62103425 10.71736643 9.38864504 9.16341269 13.70150133 12.09789673 NA 3.15343246 7.00587153 NA 3.15343246 5.81639491 7.18317583 5.93769984 8.97502538 9.91719438 8.30993331 12.77710699 8.14841048 8.48732958 3.44293023 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NA choroid stage iiib t4c n0 m0 male 2012 yes white not hispanic or latino 2 1 1 1 5 4 1 1 6 0 0 4 0 0 0 0 6 0 4 0 0 0 6 0 0 4 0 0 0 0 6.936103e-07 1.734026e-07 12 20 28 4 36 11.054750 5.172963 10.489505 8.938128 9.996500 12.557427 6.778867 12.037586 0.81386000 3.65690000 -0.00075872 -0.00062440 -0.00062440 -0.01965800 -0.78602000 -0.78602000 -0.78391000 -0.78391000 -0.79073000 -0.79073000 -0.84607000 -0.84607000 -0.95352000 -0.01801000 -0.01801000 -0.53708000 -0.53708000 -0.53708000 0.00131670 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.537 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.983 0.000 -0.786 -0.786 1.405 0.000 0.000 0.000 -0.032 -0.846 0.000 0.000 2.703 3.657 -0.250 -0.250 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.537 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.983 0.000 -0.786 -0.786 1.405 0.000 0.000 0.000 -0.032 -0.846 0.000 0.000 2.703 3.657 -0.250 -0.250 0.000 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9.499054 9.294099 11.257181 13.923033 6.951633 12.138693 0.616790 1.192800 0.531860 -0.646120 -0.646120 -0.020908 -0.662280 -0.662280 -0.651080 -0.651080 -0.651080 -0.651080 0.616790 0.616790 -0.075211 0.557260 0.557260 0.556910 0.557440 0.564010 0.531860 0.000 0.000 0.557 0.557 0.580 0.580 0.000 0.585 0.576 0.557 0.557 0.532 0.532 0.578 0.578 0.000 0.000 -0.631 0.000 0.539 0.539 0.566 0.000 0.000 0.000 -0.651 -0.651 0.000 0.000 0.605 0.605 0.617 0.617 0.000 0.000 0.000 1.193 0.000 0.000 0.145 0.145 0.000 0.000 0.557 0.557 0.580 0.580 0.000 0.585 0.576 0.557 0.557 0.532 0.532 0.578 0.578 0.000 0.000 -0.631 0.000 0.539 0.539 0.566 0.000 0.000 0.000 -0.651 -0.651 0.000 0.000 0.605 0.605 0.617 0.617 0.000 0.000 0.000 1.193 0.000 0.000 0.145 0.145 7.0563310 9.9169629 2.1494545 3.0754471 8.6556491 9.4632307 10.8112187 10.8942745 8.5451888 14.0620680 9.4068285 0.8274939 4.0754385 5.1494423 1.6348720 2.4124835 9.2464193 8.2785586 6.5279524 10.2160680 10.7526960 3.9568001 12.5168553 8.4087131 8.5672929 2.1494545 7.8275123 2.9149663 9.4963974 2.6348720 10.0326949 -0.1725061 NA 10.0937133 7.1267210 8.7070958 6.7990562 8.2704561 12.5345480 10.831030 10.862999 3.471370 10.299696 8.800492 8.849880 13.431486 13.492904 10.137557 9.896962 11.237964 13.334316 4.149438 12.596007 10.386890 13.148243 13.504461 12.426379 11.368367 14.112987 12.429861 7.793297 5.094299 6.442222 12.117675 6.902242 5.758250 9.038184 10.599002 12.586881 12.013472 10.943856 6.746376 4.286948 7.349663 6.548612 5.710156 4.582399 12.606308 -1.172344 11.230525 11.499717 9.336298 9.774324 10.097224 11.241405 11.944019 10.918948 9.160668 12.656740 TCGA-V4-A9EQ 64 1 455 NA choroid stage iiia t4a n0 m0 male 2010 no white not hispanic or latino 1 1 1 1 5 4 1 3 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 3.468052e-07 1.734026e-07 13.3333333333333 13.3333333333333 20 26.6666666666667 26.6666666666667 7.972754 1.275782 8.428071 10.295377 9.607823 13.158716 8.185679 10.479134 0.0126150 1.5197000 0.0039844 -0.8376800 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10.818543 9.235279 4.458159 6.937754 8.320943 6.058548 2.503959 11.943011 NA 10.849365 10.114062 7.440598 9.675987 10.473346 10.302431 11.401805 10.578770 7.803168 12.495659 TCGA-V4-A9F7 78 0 NA 1256 choroid stage iib t3a n0 m0 female 2011 no white not hispanic or latino 4 4 3 2 4 3 3 2 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 4.855272e-07 1.387221e-07 22.2222222222222 11.1111111111111 16.6666666666667 22.2222222222222 27.7777777777778 11.969099 -1.120294 10.461015 9.421878 11.049113 12.913581 6.780680 12.586418 0.9713100 -0.0031859 -0.0091286 -0.0033243 -0.0022168 0.0015255 -0.0025806 -0.0025806 -0.0025806 -0.0025806 0.0044411 0.0044411 0.0023581 0.0023581 -0.0031859 -0.0015243 0.0047190 -0.0013858 -0.0013858 -0.0013858 -0.0091286 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.969 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 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11.806110 -1.120294 11.413874 10.831099 8.037161 9.423561 10.411195 11.175870 10.973892 10.998431 9.300827 12.359215 TCGA-V4-A9F8 68 0 NA 597 choroid stage iiia t4a n0 m0 male 2012 no white not hispanic or latino 3 1 1 1 5 4 6 4 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 5.202077e-07 2.080831e-07 13.6363636363636 9.09090909090909 18.1818181818182 27.2727272727273 31.8181818181818 11.605424 2.101583 7.668413 10.313973 9.279516 13.385150 7.785295 10.419915 0.02721600 1.20360000 0.02300500 -0.97217000 -0.97217000 -0.01257600 -0.97959000 -0.97959000 -0.97466000 -0.97466000 -0.97466000 -0.97409000 0.01217000 0.01217000 0.58274000 0.57326000 0.57326000 -0.00055444 -0.00055444 -0.00055444 0.02300500 0.000 0.000 0.573 0.573 0.000 0.000 0.578 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.975 -0.975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.583 1.150 0.000 0.000 0.000 0.000 0.000 0.000 0.573 0.573 0.000 0.000 0.578 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.975 -0.975 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.583 1.150 0.000 0.000 0.000 0.000 3.9495910 10.8274756 0.7796379 2.3646285 7.9595789 10.0476271 10.8940631 10.3419125 8.5511595 14.9032661 10.8013441 3.2391078 2.9495910 7.7796701 3.8671354 2.1015828 6.1719874 6.7569499 6.5610297 9.8960140 11.4076598 6.5870244 13.1483129 7.9294170 8.8457591 4.5345597 7.8881947 4.3646355 8.4343059 5.6376508 8.9268750 1.7796800 2.1015828 10.8691206 6.2715228 9.0417648 8.2226133 9.8444128 11.3800476 11.033518 10.372127 2.587029 11.144352 8.837662 10.027598 12.366041 11.924010 8.527863 10.257428 11.258440 12.777908 4.587023 11.804117 8.176275 12.786171 14.085091 11.125075 12.742385 12.376093 10.347626 9.208030 2.779680 4.239100 11.698161 5.364632 5.949596 9.716308 10.153623 13.238461 11.122300 11.879018 9.552809 4.303233 7.928502 7.998839 6.379583 4.867130 13.065650 NA 11.524924 9.967022 7.728037 10.352465 11.093120 10.015684 11.870113 10.905729 6.919221 12.887051 TCGA-VD-A8K7 39 0 NA 1459 choroid stage iiia t4a nx mx male 2011 no NA NA 4 2 3 2 3 2 3 2 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 2.080831e-07 6.936103e-08 25 25 25 12.5 12.5 11.835379 2.177886 10.649557 9.825340 10.691609 12.687756 6.492577 13.120763 1.7089000 0.0012481 -0.0069195 -0.0047079 -0.0047079 0.0048579 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.0036511 0.0036511 0.0012481 -0.0033243 -0.0033243 -0.0044312 -0.0044312 -0.0044312 -0.0069195 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.702 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.702 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 7.4181959 10.3035535 6.9487106 5.5701988 9.2493441 9.4474759 9.1121624 10.8807470 5.7139350 12.8096954 5.2135067 -0.1440103 1.6632991 1.6632991 1.6632991 4.6888462 9.3174330 8.2607121 7.4143740 10.4993589 10.7777946 3.9434150 12.0782957 9.0678420 6.4105429 2.1778859 8.3470451 4.0258793 8.6761327 3.4998076 10.2685235 -0.1440103 NA 9.0196032 7.1913435 11.4688221 9.6888437 9.5177318 13.2349258 9.730167 11.750961 3.810145 10.091968 7.440916 5.738598 12.878668 13.609014 11.679321 8.805780 10.600367 12.381352 8.035863 11.836986 8.537192 12.793787 13.479264 12.396082 10.540702 14.507033 12.144523 6.323559 9.205788 6.938102 11.8691018 7.0556263 3.8559498 8.7537991 10.1744964 6.4925775 12.0263482 10.2331641 8.9274159 5.8217383 5.4560143 7.9513506 5.5974209 0.8559897 11.3510591 NA 11.6434481 10.9179997 8.4181959 9.0642246 10.8083309 11.0380375 12.0829678 10.9480500 9.4798350 12.2293626 TCGA-VD-A8K8 56 1 1377 NA choroid stage iib t3a nx mx female 2011 no NA NA 1 1 4 1 5 4 7 3 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 5.548882e-07 1.387221e-07 20 5 15 15 45 10.920208 8.776745 10.364031 9.517658 10.604384 12.892848 8.194686 11.990309 0.0130740 2.3289000 -0.0027707 -0.0200010 0.0000000 -0.0011087 -0.9752500 -0.9752500 -1.2929000 -0.9530400 -0.9544900 -0.9544900 0.0130740 0.0130740 -0.9038800 -0.0127130 -0.0127130 -0.0062286 -0.0062286 -0.0151520 -0.0027707 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.954 -0.954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.425 2.329 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.954 -0.954 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.425 2.329 0.000 0.000 0.000 0.000 8.104937 9.681852 2.306816 3.023025 8.097511 7.132453 11.634686 10.789765 9.820822 13.450697 9.901937 -1.500626 0.499476 5.143316 NA 3.925724 7.095648 7.935566 6.171883 10.165682 9.700356 8.377509 11.578609 8.482451 7.546582 1.306787 7.764299 6.807797 9.045388 7.372902 10.716204 3.747387 5.369822 11.994688 4.143312 7.689282 5.007254 8.383628 12.016020 10.009728 10.573265 5.099371 10.466684 8.301974 10.234168 13.197403 13.021672 10.436096 10.688974 10.939549 13.197837 3.925724 12.444079 8.784860 12.278459 13.247389 8.341808 12.547349 13.261321 12.696673 8.581607 5.510687 6.586921 11.746792 6.843754 3.543855 9.368281 10.128359 8.784860 12.159900 10.494872 9.633242 4.728274 7.432559 7.192945 7.199898 3.023025 11.873275 NA 11.512083 10.769169 8.534257 9.929064 10.209403 10.881812 12.660432 11.085125 9.151407 12.111751 TCGA-VD-A8K9 71 0 NA 1424 choroid stage iia t2a nx mx female 2011 no NA NA 4 4 3 2 4 3 7 2 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 4 0 0 4 2.774441e-07 2.080831e-07 28.5714285714286 21.4285714285714 0 21.4285714285714 28.5714285714286 12.0896568 0.9073522 10.7390105 9.7503655 10.4589026 12.9181944 5.5854583 12.2818827 2.34810000 2.33010000 0.00180300 -0.00207840 -0.00373950 -0.98681000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 -0.98679000 -1.01960000 -0.01056400 -0.00733390 -0.00733390 0.00013863 0.00013863 0.00013863 0.00180300 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.850 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.329 2.329 0.000 0.000 0.000 0.853 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.850 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.329 2.329 0.000 0.000 0.000 0.853 0.000 0.000 0.000 0.000 6.7553830 9.7089333 6.3668188 5.7851320 8.4619754 11.9894026 9.7641234 10.1652458 6.0853035 13.6887053 7.5338257 2.6729231 -1.4146528 3.1704218 NA 4.6298520 9.7421737 8.2148150 7.5102713 10.5005910 11.2340408 4.3668188 12.3510554 9.1381277 7.0652384 0.5854433 8.7167752 3.5854553 8.0753064 2.0448837 10.7469053 -1.4146528 NA 10.0376997 7.0813141 9.1974054 8.9637533 9.1100001 13.1031894 10.434473 10.520992 4.044892 10.281991 7.693983 9.565598 13.129880 13.219419 11.199248 10.771573 10.697572 12.543558 6.533827 13.082811 8.933080 13.656502 13.222366 11.568452 12.456883 13.571612 12.745008 8.166659 9.827442 6.699200 11.387975 8.474202 2.285905 9.046938 10.620601 7.254344 11.773584 10.637007 9.756009 5.618882 6.222735 5.693983 5.200167 2.392812 12.141006 NA 11.455631 10.347425 8.426236 9.508511 10.077812 10.928644 11.492537 10.888668 9.110979 12.264499 TCGA-VD-A8KA 22 0 NA 1178 choroid stage iib t3a nx mx male 2011 no NA NA 4 4 3 2 4 3 3 2 0 0 0 4 0 0 0 4 0 0 4 0 0 0 0 0 0 4 0 0 0 4 5.895688e-07 6.936103e-08 15.7894736842105 5.26315789473684 5.26315789473684 10.5263157894737 63.1578947368421 12.278350 NA 9.247393 10.220239 10.662431 12.970541 6.655828 11.661813 1.81580000 1.76270000 0.06562100 -1.03290000 -0.97169000 -0.01302300 -0.20252000 -0.20252000 -0.20252000 -0.22537000 -0.22537000 -0.22537000 -0.00709160 -0.00709160 -0.00044998 0.00941480 0.00941480 -0.01398700 -0.01398700 -0.01398700 0.05478600 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.225 -0.225 0.000 0.000 0.000 0.000 0.432 0.000 0.000 0.000 0.000 0.928 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.972 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.225 -0.225 0.000 0.000 0.000 0.000 0.432 0.000 0.000 0.000 0.000 0.928 0.000 0.000 0.000 0.000 4.7456246 11.3222717 3.4726047 6.0169264 8.0650628 12.0497201 10.8720620 9.8042695 4.9100131 13.8536081 8.5041925 2.9750982 2.5880850 5.3139097 0.4725917 3.7456246 8.9002679 7.9456352 7.0169264 10.5596268 11.9318668 3.6950027 12.8307993 8.8706372 7.7945341 0.4725917 8.4163711 2.0575542 7.9238171 2.7945406 9.3191410 -0.1123188 -1.1124747 10.2949112 6.1822652 10.8848229 10.0214280 9.9169307 13.4335732 10.771432 11.061633 3.841842 10.488486 8.070038 9.914167 12.764256 13.007719 10.263769 10.630374 11.013380 12.897647 5.818380 12.178238 8.586348 13.045464 13.380185 11.426560 12.268646 13.149077 12.088081 8.517000 8.992242 5.330587 11.763009 7.524268 3.642528 9.881290 10.466016 9.404328 11.977756 11.059758 9.813940 2.472618 6.594242 7.480100 4.794535 2.347070 12.868319 -1.112475 11.566904 10.414632 8.089767 9.850279 10.708620 10.657894 11.192565 11.450363 8.202793 12.794534 TCGA-VD-A8KB 66 0 NA 1354 choroid stage iib t3a nx mx female 2011 no NA NA 4 4 3 2 4 3 7 2 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 4 0 0 4 5.548882e-07 3.121246e-07 20 12 24 4 40 12.4852131 -0.8122323 9.5485707 10.1162419 9.8189007 12.9552874 5.8742240 11.6285928 1.5759000 1.9512000 0.8816600 -0.0230990 -0.0154050 -0.0465440 0.0041632 0.0041632 -0.0134020 0.0620800 0.0620800 0.0620800 -1.0385000 -1.0385000 -0.0062286 -0.0220580 -0.2088300 -0.0354480 -0.0354480 -0.0354480 -0.0425170 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.520 0.513 0.000 0.000 1.076 1.076 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.520 0.513 0.000 0.000 1.076 1.076 0.000 0.000 0.000 0.000 NA 11.3944327 1.7726880 6.1065870 8.9625106 12.2952676 10.3763124 10.1692909 5.3576470 12.9222215 7.9853849 -0.8122323 1.5096452 4.9690814 -0.8122323 4.5096515 8.4403892 7.8985300 7.0946140 10.2066192 12.2736939 3.6471533 12.8163969 8.8134323 7.1360909 0.7726458 8.3421365 1.7726880 8.1448254 1.5096452 10.5096517 -0.8122323 -0.8122323 9.9658007 5.3775472 7.4915044 8.8495017 9.6705316 12.5156972 10.972767 10.492645 4.509652 11.115502 9.219769 8.609788 13.002106 13.125189 10.126568 10.579504 11.560045 13.555821 5.509652 8.259186 8.058088 12.659018 13.206880 11.692543 12.230922 13.199562 11.815253 8.653290 10.056546 6.605576 11.3716691 7.3725987 5.4731245 9.0174462 10.4556807 10.8056501 11.7639717 11.3986993 9.3131370 2.9950865 7.1505038 7.7499659 4.3971800 0.7726458 13.0952715 -0.8122323 11.7377489 9.9641566 7.4591865 9.0121256 11.0757057 10.7399124 11.0821624 11.0957408 7.9525951 12.8476080 TCGA-VD-A8KD 72 1 114 NA choroid stage iv t4a nx m1 male 2012 no NA NA 1 1 4 1 5 4 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5.895688e-07 2.427636e-07 25 4.16666666666667 4.16666666666667 12.5 54.1666666666667 10.943259 9.944461 10.360250 9.498859 10.976255 12.641801 7.680826 12.498756 0.01391100 1.06970000 0.01642500 -0.77150000 0.00972760 -0.00097017 -0.80385000 -0.80385000 -0.80385000 -0.80385000 -0.80385000 -0.80385000 0.02244400 0.02244400 0.55324000 -0.01106000 -0.01106000 -0.01120900 -0.01120900 -0.00152430 0.01642500 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.804 -0.804 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.070 1.070 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.804 -0.804 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.070 1.070 0.000 0.000 0.000 0.000 9.362500 9.448904 1.522407 2.522407 8.756701 7.869860 10.956727 10.556606 8.857149 13.702039 10.010237 1.300007 4.329755 4.962970 3.107353 4.924494 8.376820 7.902394 5.962970 10.540001 10.070393 8.882460 11.657740 8.301882 7.582320 1.522407 7.703101 7.797191 8.889967 8.596156 9.992329 6.715042 5.914715 12.265548 4.300007 9.799186 3.300007 8.723471 11.545755 9.896815 11.056005 4.036969 9.995813 8.318668 9.638369 13.056561 13.404494 10.485293 10.080817 10.993201 13.100904 4.962970 12.426494 8.200871 12.280501 12.868356 8.820950 12.256743 13.032101 11.968885 7.300004 5.802503 6.657556 11.709749 6.849468 5.621932 9.491475 10.003331 10.284897 11.871441 10.464911 8.653151 9.132894 6.069775 6.764890 7.689456 5.314954 12.098881 NA 11.694110 10.884340 8.499676 9.703158 10.015966 11.029908 12.797523 11.350987 9.123372 11.965488 TCGA-VD-A8KE 74 0 NA 821 choroid stage iia t2a nx mx female 2012 no NA NA 1 2 3 2 4 3 7 2 0 0 4 0 4 0 0 0 0 4 0 4 0 0 0 0 4 0 4 0 0 0 6.242493e-07 3.121246e-07 11.1111111111111 7.40740740740741 22.2222222222222 18.5185185185185 40.7407407407407 12.232172 3.947245 9.163409 10.134344 10.818038 12.937206 7.502895 11.322887 0.9668900 -0.0026503 0.0373400 -0.0025118 -0.0025118 0.0102670 -0.0050024 -0.0050024 -0.0050024 -0.0050024 -0.0076936 -0.0076936 0.9662000 0.9662000 -0.0026503 0.0017849 0.0017849 0.0081778 0.0040468 0.0040468 0.0373400 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.966 0.966 0.000 0.000 0.000 0.000 0.960 0.960 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.966 0.966 0.000 0.000 0.000 0.000 0.960 0.960 0.000 0.000 3.4815831 11.7369506 4.8706261 5.2790924 8.6361617 12.4099269 9.8706270 9.2616949 7.1336611 12.9483167 8.0200049 1.0892947 4.4468186 4.2185487 -0.9107731 3.4815831 7.7002920 8.0288465 6.3180854 10.9688506 11.9333846 5.9596311 12.8494675 9.1925552 7.0722613 0.6741894 8.8273595 3.4815831 7.9565463 3.7331265 9.9642487 1.4112093 NA 10.5181509 5.6591225 9.7581522 2.5487079 8.1951758 12.9173046 10.521809 10.468104 2.996154 10.753715 8.446819 7.909446 12.643496 12.774126 9.046369 9.599042 11.083621 12.585247 7.356054 13.141835 8.420184 12.472972 12.212257 9.657223 10.666224 12.906151 10.048545 6.176730 9.358394 6.187299 11.460772 6.850818 3.337197 9.691966 10.046369 11.029214 11.678684 10.839137 9.206910 3.947245 6.907338 8.440206 6.043463 5.971911 12.787646 NA 11.594831 10.420184 8.171417 9.860295 10.863643 10.297502 11.801579 11.174408 8.037635 12.486006 TCGA-VD-A8KF 68 1 40 NA choroid stage iiib t4b nx mx male 2013 no NA NA 1 3 1 1 6 4 7 3 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 2.427636e-07 1.040415e-07 30 10 10 0 50 8.220064 6.622501 10.631176 9.586462 10.872093 12.915428 8.299386 12.577412 0.0049969 1.0281000 -0.0331320 -0.0020784 -0.0020784 0.0040243 -1.1154000 -1.1154000 -1.0724000 -1.0724000 -1.0714000 -1.0612000 0.0049969 0.0049969 -0.8921200 -0.0160170 0.0000000 -0.0190400 -0.0190400 -0.0190400 -0.0331320 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -1.071 -1.071 0.000 0.000 0.000 0.000 0.000 0.000 1.055 1.055 -0.892 0.135 0.000 0.000 0.000 0.000 0.000 0.000 0.000 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11.718685 -1.210229 11.724039 11.087387 8.862414 9.378260 10.325858 11.017528 12.764474 11.294926 9.474360 11.864923 TCGA-VD-A8KG 47 0 NA 19 choroid stage iia t2a nx mx female 2012 no NA NA 4 4 3 2 4 3 NA NA 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 5.202077e-07 1.734026e-07 20 10 10 25 35 12.4622685 0.2618317 9.1617411 10.1455422 9.4225925 13.8952922 6.5472832 10.7223366 3.44340000 1.73140000 0.00277450 0.00000000 0.00000000 0.00597000 -0.01304900 -0.01304900 0.00541390 0.00064041 0.00064041 -0.00470790 -0.04563500 -0.04563500 -0.01285100 0.88774000 -1.03220000 -0.00321920 -0.00321920 -0.01450300 0.00277450 0.000 0.000 0.955 0.955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.629 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.731 0.000 0.000 0.120 0.120 0.000 0.000 0.955 0.955 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.629 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.731 0.000 0.000 0.120 0.120 4.034471 11.166515 6.571736 5.184713 8.689543 13.718706 10.355958 9.455817 6.377358 13.183660 8.591303 3.320773 -1.323011 4.905736 NA 2.484267 8.094771 8.144524 6.516122 10.615028 11.988383 6.985257 13.481604 9.360790 8.150624 1.676899 8.438470 4.905736 9.163753 5.915323 10.346689 2.377346 1.846834 11.220192 5.886372 9.974408 7.352875 8.550362 12.203417 10.913530 9.049783 1.998845 10.697551 8.594290 8.586811 12.414271 12.196309 9.573251 10.306730 10.900920 12.539943 4.431803 12.861948 8.420070 13.034608 14.376274 11.930618 12.138526 12.581929 10.781514 7.927217 9.583057 5.276832 11.257648 6.998847 3.924841 9.448408 9.944290 9.167769 11.368662 11.150117 9.306275 4.905736 6.619023 7.659912 5.743009 4.886370 12.489597 -1.323011 11.066012 9.937838 8.479435 10.509792 9.865507 10.018437 11.103707 11.274272 7.160734 12.512969 TCGA-VD-A8KH 69 0 NA 1158 choroid stage iiib t4b nx mx male 2012 no NA NA 6 2 3 3 2 2 4 1 0 0 0 4 0 0 0 4 0 0 4 0 0 0 0 0 0 4 0 0 0 4 5.202077e-07 2.427636e-07 31.8181818181818 4.54545454545455 18.1818181818182 4.54545454545455 40.9090909090909 10.8340459 -0.2838431 10.3814141 9.3814142 10.9875412 12.7258194 7.7713607 12.1680620 0.0011093 0.8796600 0.0303100 -0.9591900 0.0140510 -0.0154660 0.0366530 0.0366530 0.0562280 -0.9938800 -0.9828000 -0.9809000 0.0011093 0.0011093 -0.0102320 -0.0099565 -0.0099565 0.0305910 0.0305910 0.0348180 0.0432990 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.920 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.103 0.103 0.000 0.880 -0.938 -0.938 -0.141 -0.141 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.920 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.103 0.103 0.000 0.880 -0.938 -0.938 -0.141 -0.141 7.437178 9.301980 6.555282 5.749502 7.868363 8.512118 10.502348 9.874057 8.811475 15.028465 8.661522 3.670274 7.104095 5.416519 6.819365 4.824605 8.287831 7.388504 6.808836 10.388945 10.542229 4.443998 11.606912 8.828518 7.187754 2.716069 8.366807 3.670274 9.432898 2.964010 10.322946 -1.283843 NA 10.187245 5.430322 11.819858 9.686903 9.584901 13.495746 10.419982 10.661888 4.598722 10.049793 7.808836 8.962819 12.972656 13.465162 10.495798 9.905285 10.818382 12.621653 5.845362 11.775423 8.469295 12.443573 13.006241 10.230299 11.650322 13.708176 12.180877 7.913295 9.205926 6.529860 11.827540 7.947299 4.073632 9.831122 10.189784 9.599485 11.938420 10.178580 10.937665 5.586444 6.810104 6.652716 5.749502 2.301032 11.433112 -1.283843 11.707246 10.464271 8.133931 8.824943 11.511712 11.105172 12.514955 10.962522 8.969926 12.508157 TCGA-VD-A8KI 68 1 1113 NA choroid stage iib t3a nx mx male 2012 no NA NA 5 1 4 1 5 4 1 1 5 0 0 0 7 0 0 0 5 0 0 7 0 0 5 0 0 0 7 0 0 0 6.242493e-07 2.774441e-07 14.8148148148148 18.5185185185185 14.8148148148148 25.9259259259259 25.9259259259259 7.580436 10.499299 8.591130 9.255552 9.124756 13.172002 7.136486 10.853454 0.8916600 2.4175000 -0.0583270 -0.0056512 -0.0056512 0.0263730 -0.9174600 -0.9174600 -0.9174600 -0.9174600 -0.9050200 -0.9297100 -0.9474900 -0.9474900 -0.9671000 -0.0142280 -0.0173910 -0.0496950 -0.0496950 -0.0496950 -0.0583270 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.806 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.905 -0.905 0.000 0.000 0.000 0.000 0.892 -0.013 0.000 0.000 1.510 2.477 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.806 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.905 -0.905 0.000 0.000 0.000 0.000 0.892 -0.013 0.000 0.000 1.510 2.477 0.000 0.000 0.000 0.000 3.888558 9.954647 1.188148 3.358045 8.042986 8.917739 10.968248 10.292061 8.121809 13.211872 10.156065 NA 1.188148 6.307059 NA 1.188148 6.199345 7.795448 5.888558 9.734048 11.822021 6.337864 11.999091 8.754172 7.765547 0.773068 7.679971 4.275581 8.934632 4.614380 11.079902 1.773068 2.358030 10.940499 3.831979 6.810169 2.888558 8.204926 11.619354 10.743186 9.788031 1.773068 10.528525 8.485034 10.919437 12.696160 12.343094 9.003501 10.478137 10.950085 12.559214 4.275581 12.652281 8.865838 11.599894 13.326870 6.810169 12.689084 12.239667 11.313205 9.079902 6.995473 4.888558 10.990230 5.358045 4.188116 8.661824 10.094257 9.731150 11.595386 11.409705 9.566413 3.888558 6.235786 7.082936 5.118854 2.188116 12.496457 NA 11.290750 9.939662 7.101007 10.265702 9.990634 10.171824 11.444032 10.393300 7.392689 12.485751 TCGA-VD-A8KJ 53 0 NA 1150 choroid stage iib t3a nx mx male 2011 no NA NA 4 4 3 2 2 2 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5.895688e-07 3.468052e-08 16.6666666666667 16.6666666666667 11.1111111111111 22.2222222222222 33.3333333333333 11.8572085 -0.2060625 10.1937939 9.6053567 10.3595602 13.4421148 6.3638369 12.5425942 1.7073000 1.3946000 0.0061937 -0.0064208 -0.0064208 0.4779700 -0.0713910 -0.0713910 -0.0713910 -0.0713910 -0.0805180 -0.0805180 1.5765000 -1.0184000 -1.0361000 -0.0080783 -0.0080783 0.0170610 0.0208480 -0.0026863 0.0228100 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.486 0.486 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -1.008 -1.008 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.486 0.486 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -1.008 -1.008 0.000 0.000 0.000 0.000 3.041909 10.529961 3.494416 5.269714 9.089751 10.914220 10.343285 9.678153 5.186298 12.835898 7.070106 3.186295 6.371411 4.494422 6.203373 3.494416 8.860071 8.081694 6.771262 9.760487 10.546781 4.724721 12.315214 9.500478 7.386439 1.963918 8.281822 3.601340 8.499614 3.115916 10.387373 -1.205896 -1.205896 10.466849 7.862760 7.408691 6.765525 9.199123 12.908700 10.136057 10.542594 4.902508 10.207610 8.027602 9.233813 13.100542 13.200652 10.834272 10.152084 10.907724 12.623011 7.008301 11.753260 8.637903 13.422598 12.654099 10.340394 11.689368 13.430833 12.297677 8.501341 9.090898 6.838376 11.386906 7.337013 4.748177 9.240031 10.485289 10.749995 11.850112 10.657007 9.396681 3.317550 7.148540 7.936089 6.060769 2.700884 12.060915 NA 11.384101 10.419234 8.287837 9.100944 10.028201 10.778756 11.845021 10.637903 9.190587 12.012545 TCGA-VD-A8KK 54 0 NA 64 choroid stage iiia t4a nx mx male 2013 no NA NA 1 3 4 3 5 4 4 1 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 5.548882e-07 1.387221e-07 20 15 5 30 30 8.689503 7.393063 9.287936 8.753045 10.192799 12.538214 7.591513 11.321946 0.0137720 1.0015000 -0.0242510 -0.0019399 -0.0019399 0.0041632 -0.9575300 -1.0123000 -0.9253300 -0.9165700 -0.9165700 -0.9165700 0.0137720 0.0137720 -0.0136770 -0.0107840 -0.0105080 -0.0353120 -0.0491540 -0.0491540 -0.0242510 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.000 0.000 0.000 -0.917 -0.917 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.244 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.117 0.000 0.000 0.000 -0.917 -0.917 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.244 0.000 0.000 0.000 0.000 6.2897220 10.3388702 1.2164859 3.8014381 7.6759048 9.4863793 11.1293628 10.0546270 8.1745427 13.7119955 10.6649340 1.2164859 5.7400344 7.8603297 -0.3684766 3.2164704 7.2164733 7.4452922 5.8014355 10.4540818 10.9180688 6.4128713 12.0757494 9.0130541 7.7607938 2.8014277 7.8506794 4.5857077 8.6201956 5.3039378 11.3712916 2.4388783 2.4388783 11.6364337 4.2753647 6.2164743 2.6315001 8.6116504 12.2861470 11.092990 9.545896 3.953442 9.875875 8.737419 11.274465 12.273111 12.422470 9.064053 9.940987 11.025974 12.753854 3.801438 11.996740 7.791382 11.772660 11.786329 7.902974 11.915757 12.096567 11.117340 9.203264 5.155073 5.216474 11.099626 6.935291 4.331949 8.848257 9.514154 11.923545 12.037450 10.773618 9.425927 5.023828 7.554482 8.349187 6.331951 3.090938 12.454878 NA 11.299953 10.021680 6.642738 9.924327 11.030255 10.758861 11.635029 10.554095 7.811420 12.587887 TCGA-VD-A8KL 77 0 NA 638 choroid stage iib t3a nx mx female 2013 no NA NA 3 1 2 3 1 1 6 4 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 7.282908e-07 6.936103e-08 26.0869565217391 8.69565217391304 17.3913043478261 17.3913043478261 30.4347826086957 11.326088 6.548805 8.853215 8.992320 9.309209 13.311158 7.971595 11.064233 0.6822900 1.3410000 0.6446300 -0.0051707 -0.0051707 0.5244400 -0.6893700 -0.6893700 -0.6893700 -0.6893700 -0.6897100 -0.6897100 -0.0051707 -0.0051707 1.3303000 0.3879400 0.3879400 -0.0068293 -0.0068293 -0.0068293 0.6446300 0.000 0.000 0.388 0.388 0.630 0.630 0.655 0.000 0.000 0.000 0.000 0.645 0.645 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.656 0.656 0.524 0.524 -0.689 -0.689 0.000 0.000 0.000 0.000 0.682 0.000 0.664 0.664 1.330 1.330 -0.698 -0.698 0.135 0.135 0.000 0.000 0.388 0.388 0.630 0.630 0.655 0.000 0.000 0.000 0.000 0.645 0.645 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.656 0.656 0.524 0.524 -0.689 -0.689 0.000 0.000 0.000 0.000 0.682 0.000 0.664 0.664 1.330 1.330 -0.698 -0.698 0.135 0.135 3.2757818 9.8990582 1.6908193 3.2757818 8.7703087 10.8456419 10.1223215 9.7596021 7.1337669 14.1777217 10.4795421 3.4981743 5.3632482 6.8707334 4.1502591 2.0127474 6.8904965 7.4981791 6.2454120 9.1826769 10.7908290 4.2143891 13.1385528 8.5205464 8.3382822 3.3912591 8.2944503 1.2757818 8.2981542 2.6908193 10.9762260 1.6908193 -0.3091807 10.4787263 7.5425730 6.3201796 7.2981542 8.3632491 11.9646194 11.283281 10.219278 3.275782 10.639921 9.609687 10.704147 12.576520 12.238441 8.673818 9.836756 11.400769 13.054548 4.275789 11.947032 8.656608 12.470748 12.247090 9.849434 12.039552 12.629485 10.720801 8.087428 7.091703 5.799349 11.253066 6.334681 5.083141 8.788856 10.143065 12.705193 11.156900 11.556557 9.507808 4.445713 6.268404 8.301849 5.012752 2.275782 12.763124 NA 11.344117 10.306453 6.976226 10.169836 11.087429 10.823966 11.578044 10.815591 7.405069 13.106302 TCGA-VD-A8KM 65 0 NA 4 choroid stage iib t3a nx mx male 2013 no NA NA 1 1 4 1 5 4 1 3 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 4.855272e-07 2.427636e-07 23.8095238095238 4.76190476190476 23.8095238095238 14.2857142857143 33.3333333333333 9.075319 11.258069 9.891719 8.768685 10.122430 12.541973 7.108211 12.106116 0.4708400 1.3587000 -0.0084385 -0.0165670 -0.0011087 0.0031910 -0.4767000 -0.4767000 -0.4767000 -0.4767000 -0.4726800 -0.4726800 0.0047190 0.0047190 -0.4921400 -0.0044312 -0.0037395 -0.4832300 -0.4832300 -0.5100100 -0.0084385 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.469 -0.014 0.000 0.000 0.000 0.000 0.000 0.000 0.000 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5.250723 6.285998 11.3960370 7.1121475 7.3836741 9.4356471 9.9912550 12.5361250 12.0447525 10.4046886 7.0437229 10.6121020 6.2747332 6.2790125 9.0753192 5.8116791 12.2471473 0.1774714 10.9025559 10.5532373 8.3339782 10.2107041 9.7301428 10.8796465 12.1012964 10.8695080 8.9933908 11.6428701 TCGA-VD-A8KN 60 0 NA 68 choroid stage iia t2a nx mx female 2013 no NA NA 5 1 4 1 5 1 1 1 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 4.161662e-07 6.936103e-08 26.6666666666667 20 6.66666666666667 6.66666666666667 40 8.215563 8.784821 9.493929 9.532055 10.693926 13.057897 7.774814 11.876189 0.14384000 1.85190000 -0.00733390 0.00305220 0.00305220 -0.00013862 -0.92406000 -0.92406000 -0.92406000 -0.92406000 -0.92406000 -0.92406000 -0.10985000 -0.10985000 -0.03313200 -0.01381500 -0.01381500 -0.08768600 -0.10355000 -0.10355000 -0.00733390 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.924 -0.924 0.000 0.000 0.000 0.000 0.144 0.034 0.000 0.000 1.852 1.852 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.924 -0.924 0.000 0.000 0.000 0.000 0.144 0.034 0.000 0.000 1.852 1.852 0.000 0.000 0.000 0.000 7.7132676 9.7289021 1.8306204 3.0232731 8.5429061 9.6425727 11.2622715 10.8213365 8.0260846 13.4495345 10.7935207 -0.9768156 3.4827063 5.3451976 1.3452260 1.8306204 7.6562647 7.6453219 6.5231150 9.6553561 11.0341475 8.3564251 12.3321776 8.4888363 8.0260846 3.0232731 7.9150536 6.6671257 8.7664212 6.6956946 10.7647368 4.1525566 4.0676645 10.9723669 4.0232731 5.7375164 3.4827063 8.7545889 12.4628410 10.192569 10.258087 4.449535 10.436369 8.602586 9.890549 13.196010 12.922627 9.685048 10.595496 10.982910 12.852497 5.363118 11.813618 8.817686 12.372413 12.594548 10.196947 12.253591 13.076347 12.361726 8.374209 6.546831 6.203180 11.8156534 6.8687596 5.0005499 9.5141207 10.4262818 11.3181777 12.1188316 11.0508303 9.1133822 4.9059140 6.4240638 7.2180265 7.4990031 6.5231150 12.4424399 -0.9768156 11.1130513 10.9763749 8.3429418 9.7437962 10.0758378 10.6236473 12.1817217 11.2284521 8.4682848 12.2281465 TCGA-VD-A8KO 51 0 NA 795 choroid stage iia t2a nx mx male 2012 no NA NA 4 2 3 2 4 3 NA NA 0 0 2 0 4 0 0 0 0 2 0 4 0 0 0 0 2 0 4 0 0 0 3.121246e-07 1.040415e-07 33.3333333333333 8.33333333333333 8.33333333333333 8.33333333333333 41.6666666666667 11.312668 NA 10.659309 9.638734 11.205158 13.771959 5.314831 12.774375 1.01650000 -0.00201580 -0.00553750 -0.00083160 -0.00083160 -0.00069303 -0.00277070 -0.00277070 0.00569190 0.00235810 0.00185940 0.00185940 0.00638710 0.00249690 0.00555290 -0.00263220 1.01730000 -0.00235530 -0.01780300 -0.01780300 -0.00553750 0.000 0.000 0.000 1.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.010 0.000 0.000 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8.061644 5.147376 3.372938 11.583413 NA 11.367585 11.369073 9.532274 9.770809 9.609829 11.038270 11.227638 10.925502 9.778747 12.125535 TCGA-VD-AA8M 64 0 NA 6 choroid stage iia t2a n0 m0 male 2013 no NA NA 4 4 3 2 4 3 6 2 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 7.629713e-07 1.040415e-07 20 4 12 32 32 12.2532029 -0.5160166 9.0270166 10.3810739 9.9688077 13.0592877 6.5714478 10.8282807 0.0539480 -0.0019399 0.1867700 0.0358060 0.0042449 0.0000000 0.0091705 0.0091705 0.0091705 -0.0086404 -0.0125300 -0.0125300 -0.0036011 -0.0036011 -0.0019399 0.0036808 0.0036808 -0.0548250 -0.0548250 -0.0548250 -1.2929000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.0689459 11.7419619 3.7319109 4.3908740 9.1861576 12.0486107 9.4028481 9.4439868 6.2653450 12.8863308 8.7223895 -0.5160166 6.1278417 5.3168734 2.8059115 2.6539084 7.2718878 7.9060494 6.7223895 10.9907883 10.6824299 5.3168734 13.1007634 8.8997267 7.5392674 -0.5160166 8.2848847 3.2913383 7.9515901 3.9434150 9.5964244 -0.5160166 -0.5160166 10.4176755 4.6132664 9.0424055 9.3772865 8.3481709 12.6507756 10.684270 9.700731 2.653908 10.948020 8.683657 8.338853 12.495562 12.508605 8.646376 9.768231 11.247197 12.494338 7.225451 12.362994 8.184425 12.873616 12.650305 9.211905 11.407684 12.624655 10.129643 7.091315 9.076442 6.341966 11.176164 5.414721 3.943415 9.770543 9.396874 9.610689 11.309341 9.838234 9.555447 4.693437 6.016924 9.220387 5.341964 5.316873 11.937770 NA 10.509124 8.969814 8.023144 9.424005 9.489609 9.258772 10.569457 10.027017 6.731912 11.473024 TCGA-VD-AA8N 86 0 NA 44 choroid stage iib t3a n0 m0 male 2013 no NA NA 5 1 4 1 1 1 2 1 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 2.774441e-07 6.936103e-08 27.2727272727273 27.2727272727273 9.09090909090909 18.1818181818182 18.1818181818182 10.786501 6.429731 9.122754 9.030635 10.152197 13.400125 7.903663 11.006657 0.0069435 1.5970000 -0.0271240 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3.259800 11.141226 1.937872 6.364143 NA 7.937878 11.087625 10.619117 9.429731 2.522834 10.216328 8.477037 11.781799 12.679767 12.498689 8.492467 10.161880 10.867137 12.492947 4.397310 11.285500 8.976797 11.799741 11.722513 7.522840 12.262059 12.051620 11.380822 8.035910 5.581734 5.844770 10.873043 5.692765 3.745237 8.960246 9.943503 11.795082 11.497255 10.717598 9.237086 5.397310 5.706064 7.868616 7.003968 4.522840 12.571782 NA 11.002621 9.868616 6.492467 9.561906 10.277728 10.503932 11.713489 10.585337 7.364143 12.316715 TCGA-VD-AA8O 77 1 606 NA choroid stage iib t3a n0 m0 male 2013 no NA NA 3 1 4 1 5 1 1 3 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 5.202077e-07 1.040415e-07 33.3333333333333 5.55555555555556 22.2222222222222 5.55555555555556 33.3333333333333 9.068855 8.847340 8.360275 9.191604 9.926957 12.672707 7.483892 11.037361 0.0095883 0.5825600 0.5048100 -0.6220900 -0.5796000 0.0000000 -0.5741700 -0.5741700 -0.5781200 -0.5718000 -0.5709100 -0.5709100 0.0425900 0.0425900 0.5825600 -0.0052610 -0.0052610 0.0077783 0.0077783 -0.0236700 0.5048100 -0.576 -0.576 0.000 0.000 -0.582 -0.582 0.000 0.576 -0.597 0.000 0.000 0.518 0.518 -0.577 -0.577 0.000 0.000 -0.076 0.499 0.525 0.525 0.564 0.000 0.000 0.000 -1.293 -1.293 -0.559 -0.559 0.000 0.000 0.000 0.000 0.588 0.588 0.583 0.583 -0.593 -0.593 -0.144 -0.144 -0.576 -0.576 0.000 0.000 -0.582 -0.582 0.000 0.576 -0.597 0.000 0.000 0.518 0.518 -0.577 -0.577 0.000 0.000 -0.076 0.499 0.525 0.525 0.564 0.000 0.000 0.000 -1.293 -1.293 -0.559 -0.559 0.000 0.000 0.000 0.000 0.588 0.588 0.583 0.583 -0.593 -0.593 -0.144 -0.144 5.9094227 10.3674275 1.9708169 4.8777148 8.6314128 9.0060800 9.7323740 9.0618172 8.7234821 14.3073758 12.2923751 -0.6141825 0.3858175 7.5607860 0.3858175 2.5557916 6.6242647 7.1606470 5.7077870 10.2219107 9.5940947 7.5406783 12.7777751 8.8837121 7.8534661 5.0582862 8.7032727 5.1407459 9.6266516 6.1932158 10.3886753 6.1273279 2.5557916 12.0609352 2.1932040 6.6146789 -0.6141825 8.7738777 11.7215298 11.210421 9.864630 2.193204 10.700444 9.538145 11.151975 13.170802 12.644279 8.756548 10.221121 10.920163 13.474980 4.086300 10.247723 8.980185 11.542891 12.278403 10.553278 11.916267 12.850151 11.148242 7.873700 4.812123 5.494384 11.370991 6.955716 3.086308 8.972700 10.288989 9.465345 11.236828 11.149902 7.328375 3.086308 6.475020 8.565769 5.925019 4.473326 12.758181 NA 10.804767 10.942845 7.881715 10.218924 10.631413 10.901560 12.361171 11.832944 8.044072 12.506098 TCGA-VD-AA8P 64 0 NA 86 choroid stage iib t3a n0 m0 female 2013 no NA NA 1 3 2 3 3 4 5 3 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 4.508467e-07 6.936103e-08 6.25 12.5 6.25 25 50 11.047034 1.775978 9.583315 10.024678 10.625104 12.998855 8.055183 11.422518 0.0174040 1.0097000 -0.0156040 -0.9892000 -0.9894800 -0.0173910 -1.0046000 -1.0046000 -0.9903900 -0.9903900 -0.9903900 -1.0026000 0.0421660 0.0421660 -0.0138150 -0.0067813 -0.0067813 -0.0201380 -0.0201380 -0.0201380 -0.0156040 0.000 0.000 0.000 0.000 0.000 0.000 0.000 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12.852441 11.637819 8.124688 1.775978 4.945884 12.106877 6.448386 4.512928 9.291659 10.417409 10.208502 11.652732 11.620665 9.385754 2.891439 6.940062 7.457784 6.121734 4.918916 12.490205 NA 10.490778 11.043527 8.173991 9.538785 11.167561 10.744626 11.915724 11.138999 8.168277 12.075168 TCGA-VD-AA8Q 71 1 636 NA choroid stage iib t3a n0 m0 male 2013 no NA NA 4 4 2 3 6 2 6 2 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 5.202077e-07 1.734026e-07 19.047619047619 9.52380952380952 4.76190476190476 14.2857142857143 52.3809523809524 12.132405 NA 9.110982 7.556393 10.493031 11.980560 7.736302 11.257700 -0.00138580 -0.00691950 0.00583090 0.00805670 0.00277450 -0.00069303 0.00499690 0.00499690 0.00499690 0.00499690 0.00152850 0.00805670 0.00069327 0.00069327 -0.00691950 -0.00949070 -0.01547100 -0.00055444 -0.01311400 -0.01311400 -0.77948000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.814 -0.814 0.000 0.000 0.000 0.000 0.000 0.000 0.972 0.972 0.000 0.000 0.000 0.000 0.000 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6.999337 4.804322 5.319806 10.013774 6.913945 6.284314 12.096521 NA 10.844106 9.072093 4.726319 9.620489 10.625172 9.787614 10.500373 9.864732 7.064188 12.088749 TCGA-VD-AA8R 78 0 NA 6 choroid stage iib t3a n0 m0 female 2013 no NA NA 4 2 3 2 3 2 NA NA 0 0 5 4 0 0 0 0 0 5 4 0 0 0 0 0 5 4 0 0 0 0 3.468052e-07 1.387221e-07 35.7142857142857 7.14285714285714 14.2857142857143 28.5714285714286 14.2857142857143 11.6936105 -0.2090612 10.1718607 10.0814535 10.9488371 12.8962761 7.6735013 11.7039350 0.00263570 0.00138680 0.00000000 -0.00142200 -0.00142200 -0.00740130 0.00221930 0.00221930 0.00221930 0.00221930 0.00221930 0.00221930 0.00180300 0.00180300 0.00138680 0.00166420 0.00166420 -0.00041585 -0.00041585 -0.00041585 0.00000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.3758179 10.5449109 6.2584643 5.2338037 9.0411570 9.4826021 9.5365330 9.5085350 6.3907708 12.9493894 10.0340326 NA 1.3758457 5.4773600 2.8783134 3.6488450 7.8783213 8.4238538 6.5590436 11.1062913 9.5474149 3.9607804 12.5420888 8.3492795 6.6174072 0.3758457 8.2429145 0.7908554 9.2002496 0.7908554 9.7289679 -1.2092280 NA 9.4834740 6.6977488 8.8902065 8.4274834 7.7274964 12.7504984 9.723811 10.840026 4.148414 10.366398 8.187463 9.088921 12.971545 13.056107 10.334374 9.592567 10.903298 12.682927 5.661222 4.038787 8.890207 12.127644 9.972011 9.371117 10.440564 13.285839 11.354284 5.405567 7.715671 6.337754 12.118271 6.148412 2.878313 10.258464 10.305080 5.165900 12.029711 10.027471 8.463284 4.721597 5.148235 8.217124 5.250291 3.835257 11.273919 -1.209228 11.502095 10.803832 8.983152 9.009252 9.783089 10.559043 11.821008 11.481948 8.714186 12.206072 TCGA-VD-AA8S 40 0 NA 427 choroid stage iia t2a n0 m0 male 2013 no NA NA 3 4 3 2 4 3 3 2 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 2.774441e-07 0 37.5 0 37.5 0 25 12.335947 NA 8.250354 10.252338 9.572812 13.215779 8.419985 10.708582 3.65690000 0.88971000 0.87587000 -0.00110870 -0.00068732 0.81819000 0.00346870 0.00346870 0.00346870 0.00346870 -0.00441550 -0.00441550 -0.00885260 -0.00885260 0.89615000 0.00000000 0.00000000 0.00138680 0.00138680 0.00138680 0.87587000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.876 0.876 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.818 0.818 0.000 0.000 1.709 0.000 0.000 0.000 1.740 1.740 0.000 0.000 0.896 0.896 0.873 0.873 0.220 0.220 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.876 0.876 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.818 0.818 0.000 0.000 1.709 0.000 0.000 0.000 1.740 1.740 0.000 0.000 0.896 0.896 0.873 0.873 0.220 0.220 1.4821771 11.7412071 1.1602103 6.7148307 9.1360899 14.3065719 10.6339476 9.4855474 4.9931309 12.5809917 8.5023167 3.6838087 6.7526991 6.2046357 0.7451943 1.7451943 8.5331070 7.7088328 5.8326673 11.0697600 12.3616001 6.0671332 13.7151305 9.4799140 7.8847560 1.1602103 8.5089701 2.4821771 8.2128101 4.8041000 10.2997932 2.9675929 1.7451943 10.5880785 7.2263313 10.5906945 8.3074467 8.9931320 12.7919874 11.747785 9.079105 2.619671 11.222625 9.214168 7.350067 12.417040 12.326091 9.534195 9.883903 11.316009 13.292983 6.126027 12.940269 8.359914 13.599099 13.167970 10.723915 11.650842 13.174524 10.299793 8.042885 9.822910 5.860682 10.646071 6.350066 4.445647 8.567510 10.315693 13.929667 10.947328 11.909692 8.450261 4.714833 6.950037 8.436366 6.090978 5.668037 13.539756 NA 11.820684 9.986790 6.928426 10.101796 11.102390 10.467443 11.617623 11.911158 7.774952 12.768150 TCGA-VD-AA8T 83 0 NA 49 choroid stage iia t2a n0 m0 female 2013 no NA NA 6 3 1 1 6 4 5 3 6 0 0 4 0 0 0 0 6 0 4 0 0 0 6 0 0 4 0 0 0 0 3.121246e-07 2.774441e-07 41.1764705882353 5.88235294117647 5.88235294117647 17.6470588235294 29.4117647058824 8.783641 -1.463151 11.120454 9.525585 11.028503 12.750461 8.048654 12.803687 0.0150280 0.9688400 0.0162860 -1.0696000 0.0107030 -0.0048461 -1.0361000 -1.0361000 -0.9963900 -0.9963900 -1.0077000 -0.9958800 0.0172640 0.0172640 0.9367100 -0.0229750 -0.0129890 0.0033197 0.0033197 0.0033197 0.0162860 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.996 -0.996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.937 0.937 -0.995 0.000 -0.105 -0.105 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.996 -0.996 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.937 0.937 -0.995 0.000 -0.105 -0.105 11.0222269 9.4550185 2.1218774 3.1807526 8.1143295 9.0779973 10.9300230 10.8297975 7.3248034 13.9073838 9.1861838 -0.4631513 4.5592715 6.2303875 0.5369481 4.9462911 8.2631189 7.7555853 6.6296582 10.1879524 10.5323146 4.9631643 12.4494159 8.4750099 7.8944528 1.1218774 7.9356442 4.2093286 9.5227428 4.0287548 9.6103729 2.2373496 1.7068178 9.7341174 3.8588265 10.7217761 6.4195439 9.5696352 12.0783604 10.333346 11.582660 4.822302 9.726725 8.422597 7.528423 12.765193 13.487320 10.692351 9.925456 10.590148 13.159811 6.099144 9.817092 7.852050 12.610875 12.658110 9.029755 11.439653 13.242047 12.208659 7.350682 4.746356 6.508444 12.112204 6.278368 3.858826 9.833817 10.010606 10.857419 11.945496 10.597597 7.751220 5.028755 5.083022 8.050628 6.736572 4.369788 11.555449 NA 11.900214 11.149309 8.189746 9.604207 9.987596 11.068769 12.083072 11.350081 9.245122 12.280368 TCGA-WC-A87T 64 0 NA 2600 choroid stage iib t3a n0 m0 male 2007 no white not hispanic or latino 4 2 3 2 3 2 3 2 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 4.161662e-07 6.936103e-08 35.7142857142857 7.14285714285714 7.14285714285714 7.14285714285714 42.8571428571429 11.701739 -1.191656 10.533804 9.094995 10.805617 13.014765 6.953095 11.873853 0.89648000 0.00000000 -0.01326400 -0.00235530 -0.00235530 -0.92749000 0.00235810 0.00235810 -0.00034761 -0.00034761 -0.00034761 -0.00034761 0.00194180 0.00194180 0.00000000 0.00221930 0.00221930 -0.00719580 -0.00719580 -0.00719580 -0.01326400 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9.5080098 10.8397940 4.3934025 6.5699892 9.6515732 10.2714508 9.6702997 10.2467094 5.8637204 12.4098599 7.7626338 NA 0.3934162 3.0563581 0.3934162 5.7272997 8.9077851 8.3839764 7.3042920 10.8643976 10.8962317 4.0563668 12.3585829 8.6397444 6.2596491 1.6157929 8.9518206 3.7626358 8.7509518 2.8959036 10.5749662 -1.1916561 -1.1916561 9.7017389 6.9011939 8.7213265 6.4879172 9.2472293 12.6263204 9.758264 11.491871 5.589796 9.514933 8.070532 8.380190 12.405675 13.655005 10.981802 9.309279 10.603259 13.390462 8.032439 11.936109 8.137112 11.600414 11.235488 8.424986 10.511043 13.079682 11.626810 6.927379 9.247229 6.400895 11.697181 6.993610 2.615793 9.442341 9.779981 6.148287 12.101334 10.091526 7.027606 1.978379 6.807931 8.873180 5.522684 2.130371 11.520104 NA 11.374015 10.710812 8.034850 9.118562 9.940937 11.335670 11.383267 10.889255 9.468433 12.061989 TCGA-WC-A87U 73 1 1581 NA choroid stage iiia t3b n0 m0 male 2007 no white not hispanic or latino 4 2 3 2 4 3 3 2 0 0 4 0 4 0 0 0 0 4 0 4 0 0 0 0 4 0 4 0 0 0 4.855272e-07 1.387221e-07 11.1111111111111 27.7777777777778 22.2222222222222 5.55555555555556 33.3333333333333 11.7063039 -0.8991569 10.4545226 9.1148449 10.7464828 13.1026723 7.0838176 12.1699384 1.07480000 0.00152550 -0.00277070 -0.00180140 -0.00180140 -0.00112430 -0.00033463 -0.00033463 -0.00033463 -0.00033463 0.00541390 -0.00401620 -0.00069303 -0.00069303 -0.00037656 0.00221930 0.00221930 0.00249690 0.00249690 0.00249690 -0.00277070 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.062 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 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10.511806 7.604650 9.121874 10.059377 11.160169 11.398600 10.898891 9.059377 12.379129 TCGA-WC-A87W 57 0 NA 1703 choroid stage iia t2a n0 m0 female 2010 no white not hispanic or latino 4 3 3 2 4 3 5 2 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 2.774441e-07 1.040415e-07 18.1818181818182 0 18.1818181818182 27.2727272727273 36.3636363636364 11.750499 1.551688 11.367544 9.894730 10.920833 12.927208 7.232188 12.672496 0.9577500 0.0207630 -0.0026322 -1.0475000 -1.0011000 0.0454240 0.0065262 0.0065262 0.0065262 0.0065262 0.0065262 0.0065262 0.0016642 0.0016642 0.0207630 0.0020805 0.0020805 -0.0095738 -0.0091286 -0.0146410 -0.0026322 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.949 0.922 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.104 -0.104 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.983 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.949 0.922 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.104 -0.104 8.636132 11.597268 3.444786 4.873631 8.968350 10.255607 10.329780 11.323900 7.883899 12.994795 8.619330 2.329325 5.084196 4.810438 5.119389 3.329310 8.357217 8.130211 6.698545 10.579214 11.274511 5.084196 12.832557 8.695633 7.721628 2.066261 8.437400 3.953805 8.878774 2.651247 9.224129 -1.255667 NA 9.288347 5.651238 10.008204 9.931082 9.752076 12.622303 9.728054 12.486868 5.136667 10.043556 8.759763 6.321777 12.773290 13.188134 11.431943 9.975569 10.522836 13.973730 7.886455 12.372908 8.422068 13.520833 12.161014 10.886774 10.653866 13.359001 12.011859 7.271825 8.093076 6.344260 12.085589 7.232188 2.831816 9.770872 10.204804 11.483707 12.333063 11.355373 9.171661 3.602326 6.727057 7.741528 6.366399 4.136667 12.327313 NA 11.605435 11.161673 8.796916 9.142536 11.080576 11.307306 11.287863 11.470140 9.456875 12.336805 TCGA-WC-A87Y 59 1 1314 NA choroid NA t3 n0 m0 male 2011 yes white not hispanic or latino 6 1 2 3 2 1 2 1 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 3.814857e-07 1.387221e-07 20 26.6666666666667 13.3333333333333 20 20 9.391382 9.173315 10.259253 9.361364 11.155387 12.814145 8.253136 12.081501 0.00694350 1.58110000 0.00041593 0.00166420 0.00166420 -0.00360110 -0.70625000 -0.70625000 -0.70625000 -0.70001000 -0.70118000 -0.70118000 0.00875280 0.00875280 -0.26793000 -0.01174900 -0.00885260 -0.00304750 -0.00304750 -0.00304750 0.00041593 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.701 -0.701 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.334 1.602 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.701 -0.701 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.334 1.602 0.000 0.000 0.000 0.000 9.116041 9.689723 5.164650 3.490057 8.387664 8.211676 11.877571 10.660361 10.751061 13.840268 11.008780 7.177629 11.245195 8.476111 11.890602 3.181929 7.367040 7.539950 6.028017 10.302352 10.333126 8.018430 11.820106 8.203239 7.422606 3.877077 8.180511 7.061074 9.571790 6.834006 11.115198 3.999062 4.979435 11.430760 4.344196 8.232555 3.490057 8.507288 12.222805 9.982520 10.861073 3.743806 10.154293 8.396942 9.919538 13.427708 13.292505 10.109283 10.432565 10.642531 13.260397 9.058738 11.324643 9.485709 12.049649 12.702126 8.519232 12.179511 13.286839 12.330221 7.847603 6.313173 6.684429 11.9802075 6.7203482 5.0750148 9.3895240 10.0784772 9.8209678 11.9593796 10.7445344 8.9794358 6.4830983 6.8230895 7.0327852 7.7896112 4.9794355 11.8818727 0.7896041 11.3691628 11.0648626 8.6460366 10.0308317 10.1564797 10.8550273 12.5390616 11.0677702 9.1182860 11.9903565 TCGA-WC-A880 63 0 NA 1258 choroid stage iiia t4a n0 m0 male 2011 no white not hispanic or latino 4 4 3 2 4 3 3 2 0 0 5 0 4 0 0 0 0 5 0 4 0 0 0 0 5 0 4 0 0 0 3.468052e-07 1.040415e-07 0 7.69230769230769 38.4615384615385 15.3846153846154 38.4615384615385 11.9174822 -0.9129446 9.9238064 9.9308881 10.3151844 13.1905007 5.2964207 11.8259037 0.92290000 0.00069327 -0.00719580 -0.00235530 -0.00235530 0.00166420 -0.00288020 -0.00288020 -0.00288020 -0.00288020 0.00000000 0.00000000 -0.00235530 -0.00235530 0.00235810 0.00083195 -0.97338000 0.00013863 0.00013863 0.00013863 -0.00719580 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.428 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.428 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.40887487 11.18104470 6.52990994 5.39074678 8.68687971 12.49450034 9.13817604 9.60954851 3.73082470 11.78110722 5.68687866 0.08691961 0.08691961 1.67192738 1.40887487 3.47928231 9.37928868 8.47601748 6.71632425 11.25626572 11.16645178 5.90714545 13.10194640 9.17707938 7.59871952 0.67192738 8.81282741 4.37236710 7.97875049 4.25688989 10.15238309 1.67192738 1.08698752 10.05130793 5.57882100 10.44506866 3.47928231 7.92931759 12.89381867 10.005830 10.459832 3.479282 10.531982 8.274319 7.005830 12.977041 13.264387 10.181705 9.385030 11.120734 12.754079 8.131361 13.093381 8.748745 12.629394 12.767436 9.766447 10.073520 13.556482 10.926163 6.153055 9.895127 6.334895 10.327758 7.390748 3.086971 8.161109 10.172440 9.563713 10.977611 10.389606 8.679424 3.894323 6.743248 7.903951 5.578821 4.671927 12.214639 NA 11.175093 10.493172 7.633861 8.716597 10.030947 10.689666 10.982921 11.073165 8.808066 12.234490 TCGA-WC-A881 75 0 NA 1065 choroid stage iib t3a n0 m0 male 2011 no white not hispanic or latino 4 4 3 2 4 3 3 2 0 0 0 4 0 0 0 4 0 0 4 0 0 0 0 0 0 4 0 0 0 4 3.814857e-07 1.387221e-07 33.3333333333333 0 13.3333333333333 13.3333333333333 40 11.859342 NA 10.094997 7.948476 10.105074 12.839527 5.768568 12.391306 0.9443100 1.7692000 0.0409340 -0.9419300 0.0039263 0.0071236 0.0089330 0.0089330 0.0000000 0.0000000 0.0000000 -0.0089619 -0.9815800 -0.9815800 -0.0085359 -0.0074474 0.0108830 -0.9500400 -0.9657200 -0.9657200 0.0409340 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.950 0.000 0.000 0.000 0.000 0.000 0.000 -0.942 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.944 -0.959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.950 0.000 0.000 0.000 0.000 0.000 0.000 -0.942 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.944 -0.959 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 5.4690068 11.3164261 NA 5.9384928 8.7657472 11.2728900 10.7444156 10.1436071 7.2279990 12.9539077 10.6101320 0.7685866 4.7685655 4.5759234 3.5759174 4.8560296 8.1651723 8.5301187 7.1261201 10.2310698 11.5927308 5.7685681 11.7853759 8.8692298 7.0353545 3.0904978 8.5499275 4.8129602 8.2483479 5.6014588 9.9901547 3.9384928 NA 10.2950668 3.7685655 9.6814570 10.1979743 9.2862371 11.4128745 10.714011 10.222867 3.090498 9.725670 9.219779 9.690409 11.925599 13.110503 10.184309 11.009359 10.684447 12.603631 5.675457 11.883936 7.072348 12.800958 12.175304 11.238209 12.362659 11.906519 12.233624 8.925915 8.090496 6.440994 11.2057995 7.4690076 3.6754546 9.2341341 9.8480523 8.0069723 12.0890861 10.5392315 9.5100346 3.4690133 5.0149756 8.8129618 6.1436077 4.9384928 12.2666688 -0.2314134 11.4733358 10.0446921 5.8770915 9.1039133 10.6373902 11.0859802 10.4223084 10.9663986 8.6358462 12.5367519 TCGA-WC-A882 50 0 NA 1112 choroid stage iib t2b n0 m0 female 2012 no white not hispanic or latino 1 2 2 3 1 1 2 4 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 4.161662e-07 6.936103e-08 33.3333333333333 6.66666666666667 13.3333333333333 6.66666666666667 40 11.5137078 0.5207491 8.6345116 10.0753583 9.3473180 12.5828156 9.4426104 10.0384388 0.0277780 0.6701100 0.0112610 -0.6628100 -0.6628100 0.1885200 -0.6655900 -0.6655900 -0.6655900 -0.6655900 -0.9201700 -0.8690800 0.0277780 0.0277780 -0.0138150 -0.0085766 -0.0085766 -0.0048461 -0.0048461 -0.0048461 0.0112610 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.663 0.000 0.000 0.000 -0.699 0.000 0.189 0.189 -0.666 -0.920 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.662 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.663 0.000 0.000 0.000 -0.699 0.000 0.189 0.189 -0.666 -0.920 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.662 0.000 0.000 0.000 0.000 5.8061719 11.5347899 3.8426973 4.7686978 9.8628441 11.5284976 9.8958088 8.5486755 6.6292940 13.4199375 11.0791901 5.2756552 7.6082326 6.4980498 8.0753583 2.1057451 7.3409485 7.3787500 5.8061719 10.1931948 11.7290038 7.4396323 12.4544601 8.4515066 8.1646254 2.5207742 8.2486899 5.4276598 8.1501260 6.6292940 10.1243957 3.8426973 0.5207491 11.3764166 4.9801990 9.4544601 7.7204420 9.8783215 13.1414475 11.4492878 10.2739862 0.5207491 10.3957508 8.2142565 8.8381822 11.0550723 11.7081215 8.7204416 10.0540992 11.2427231 12.5005519 5.6082326 9.9678526 8.0443313 11.3224778 11.1646256 9.9343974 12.4941080 11.7210550 9.9322805 8.2418688 7.8870914 3.8426973 10.596249 5.806172 5.378751 9.634512 9.751991 12.976867 10.715526 11.376417 11.261393 4.690696 5.843059 9.785212 5.427660 6.012622 13.246562 NA 11.022607 9.639710 5.328126 8.960683 11.642303 9.932280 11.461817 10.713062 6.608233 12.625368 TCGA-WC-A883 76 1 241 NA choroid stage iiia t3c n0 m0 female 2012 no white not hispanic or latino 6 1 2 3 2 1 1 1 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 3.468052e-07 1.387221e-07 20 20 13.3333333333333 13.3333333333333 33.3333333333333 9.743392 1.130536 10.540975 7.527128 10.567755 12.469956 7.692766 12.100090 0.0041632 3.0354000 0.0238470 -0.8948800 -0.9041900 -0.0045695 -0.9092800 -0.9092800 -0.9092800 -0.9092800 -0.9060100 -0.9060100 0.0041632 0.0041632 -0.0170200 -0.9271100 -0.0038779 0.0129340 0.0129340 0.0129340 0.0238470 0.000 0.000 -0.909 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.047 0.848 -0.090 0.852 0.844 0.000 0.000 0.000 -0.906 -0.906 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.239 0.000 0.000 0.000 0.000 0.000 0.000 -0.909 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.047 0.848 -0.090 0.852 0.844 0.000 0.000 0.000 -0.906 -0.906 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 1.239 0.000 0.000 0.000 0.000 9.3265106 10.8920746 2.7154761 4.2179829 7.1135172 8.1473316 10.9760134 10.3496919 8.9491056 14.0113026 10.4479360 6.5981284 8.9775807 8.4748193 8.5567881 0.7154541 7.2232806 7.9086004 7.4251437 9.7842641 9.1598106 5.8029480 12.0056968 9.4737090 8.3593419 4.4880779 7.6540853 5.2802697 8.4434065 6.1078029 10.6609297 3.3004459 1.1305356 11.0642140 4.5228404 10.1375507 3.6540803 8.9378784 12.6798267 10.683673 9.950702 5.174918 9.758057 9.028369 7.514228 12.515307 13.082354 10.038165 10.794526 11.171840 13.524249 6.539914 11.414191 8.399650 12.635839 13.744773 8.344843 11.930007 12.470373 12.671499 10.366538 5.573465 5.924938 11.6696822 7.2802706 4.9885029 9.5012108 9.7571450 14.2457296 11.9182219 10.5104432 9.6293726 5.0612621 8.3480208 7.8618425 7.1305232 3.5228467 12.3066965 -0.8695962 11.1315796 10.6178610 6.9822726 9.6602468 11.0467761 11.0434127 10.7197063 10.9410950 8.4770369 12.1299949 TCGA-WC-A884 35 0 NA 12 choroid stage iiib t4b n0 m0 female 2013 no white not hispanic or latino 4 4 2 3 4 3 2 4 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 0 4 4 0 0 0 0 4.855272e-07 3.468052e-08 40 6.66666666666667 6.66666666666667 13.3333333333333 33.3333333333333 11.924734 3.661214 9.087475 9.796752 10.058001 12.797532 7.722610 11.244865 0.87169000 -0.00069303 2.78460000 -0.00774820 0.14251000 0.00013863 -0.00373950 -0.00373950 -0.00373950 -0.00373950 -0.00373950 -0.00373950 -0.00406020 -0.00406020 -0.00069303 -0.00041585 -0.25261000 -0.86097000 -0.82709000 0.16370000 -0.89779000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.139 -0.684 0.000 0.000 0.000 0.000 0.000 0.000 0.143 0.143 0.000 0.000 1.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.872 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.139 -0.684 0.000 0.000 0.000 0.000 0.000 0.000 0.143 0.143 0.000 0.000 1.131 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.872 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 2.597078 11.585248 6.385576 5.676806 8.572276 11.746365 9.510513 9.480834 8.857037 13.202559 10.529965 7.074286 10.094750 8.251390 11.170727 2.597078 8.709401 8.315067 6.376052 11.073549 10.908725 8.071338 12.672923 9.545978 8.354394 3.385569 8.337246 6.547039 8.954631 7.182042 10.372465 4.495203 4.563915 10.114928 5.423050 10.090389 7.235680 8.490795 12.881956 11.078328 10.977245 5.044538 11.866206 9.147476 10.567055 13.427955 12.964097 9.385575 9.754197 10.129878 13.745498 7.676807 12.152540 9.009553 11.221460 12.035115 10.879536 10.953031 13.566793 10.435132 7.486376 9.910787 7.074286 11.240608 6.722611 4.629502 9.667078 9.426514 13.423267 11.750286 10.518109 8.148875 5.995629 6.908939 8.801206 6.905832 6.899199 11.964593 NA 10.238310 10.333635 8.195639 9.967838 10.057256 9.731039 11.223452 9.877428 7.445987 12.325773 TCGA-WC-A885 60 0 NA 686 choroid stage iia t2a n0 m0 male 2013 no white not hispanic or latino 4 4 3 2 4 3 3 2 0 0 0 0 4 0 0 4 0 0 0 4 0 0 0 0 0 0 4 0 0 4 6.589298e-07 3.121246e-07 35.7142857142857 10.7142857142857 10.7142857142857 17.8571428571429 25 12.391215 NA 8.842491 9.823919 9.645045 12.934290 7.370423 10.650805 1.53010000 1.02870000 0.84968000 -0.00747200 -0.00747200 -0.01393600 -0.00055444 -0.00055444 -0.00055444 -0.00055444 -0.00055444 -0.00055444 -0.00013862 -0.00013862 0.07527100 -0.00595220 -0.00871460 -0.00719580 -0.00719580 -0.00719580 -0.01085300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.09430364 12.13458839 3.55372912 6.11666626 8.63345737 13.25353933 9.52684056 9.04558331 4.55372912 13.35742113 8.25920562 0.09423607 0.09423607 4.41622498 1.67924362 3.67926614 8.28905565 8.13321775 6.97694211 10.97464747 11.69606947 3.55372912 12.83429019 9.45624249 7.00118973 NA 8.17111423 1.09430364 7.33270346 3.09430364 10.71084749 1.09430364 NA 10.76495492 4.79473816 10.03093662 8.51636348 8.94604771 13.00231594 12.003442 10.226156 2.901649 10.869086 8.574079 10.180435 12.725930 12.567243 9.615899 9.935077 11.332703 13.570792 6.766724 12.404343 8.303752 13.044125 12.364886 10.071579 11.904067 13.275451 10.927972 7.723655 10.497311 5.379701 10.737253 7.342226 2.679266 8.629574 9.834079 9.906476 11.116667 11.056472 10.447446 1.094304 6.940792 7.964663 2.416218 2.901649 12.847097 NA 11.078005 9.298870 6.738154 9.893467 10.961577 10.524751 10.575089 10.421851 7.323117 13.050130 TCGA-WC-A888 76 1 575 NA choroid stage iib t3a n0 m0 male 2013 no white not hispanic or latino 1 1 4 1 5 4 1 3 4 0 0 4 0 0 0 0 4 0 4 0 0 0 4 0 0 4 0 0 0 0 5.202077e-07 1.387221e-07 26.3157894736842 5.26315789473684 21.0526315789474 21.0526315789474 26.3157894736842 11.058344 8.924546 9.997302 8.355326 10.275132 12.688783 7.525996 11.840753 0.0133530 1.3097000 -0.0038779 -0.0202750 -0.0011087 0.0038854 -0.7658700 -0.7658700 -0.7658700 -0.7658700 -0.7658700 -0.7658700 0.0133530 0.0133530 -0.4290900 0.1147700 -0.0060904 -0.0161540 -0.0161540 -0.0161540 -0.0038779 0.000 0.000 0.115 0.115 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.766 -0.766 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.882 1.311 0.000 0.000 0.000 0.000 0.000 0.000 0.115 0.115 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.766 -0.766 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.882 1.311 0.000 0.000 0.000 0.000 8.558418 10.445549 2.192099 3.777062 8.362021 10.002667 10.882094 9.956967 9.469770 13.564417 10.249185 1.607153 5.033397 6.130694 5.561329 4.964685 7.787042 7.946448 5.910915 10.704507 10.458882 9.020761 11.597237 8.759418 7.821452 2.192099 8.059580 7.951429 8.958072 8.828720 11.584413 6.973455 6.388493 12.526369 4.250992 9.286613 1.607153 8.540824 12.051630 10.543771 10.140463 3.607129 9.872748 8.635039 10.626029 12.634521 13.061818 9.419310 10.339301 10.757515 13.261210 3.414487 11.853280 8.070658 11.473639 11.831135 8.852686 12.325238 12.236034 10.671202 7.840753 6.192096 6.440024 11.3657727 6.6839490 5.7969585 8.8621615 9.4384403 10.5102618 12.0276197 10.6779249 8.7720400 7.7820586 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12.277448 NA 11.183941 10.214089 7.736798 9.609755 9.954978 10.683785 11.201572 10.940441 8.425868 11.970040 TCGA-WC-AA9A 70 1 453 NA choroid stage iia t2a nx NA female 2011 no white not hispanic or latino 3 3 1 1 5 4 5 3 4 0 0 4 0 0 0 4 4 0 4 0 0 0 4 0 0 4 0 0 0 4 3.468052e-07 6.936103e-08 23.0769230769231 15.3846153846154 7.69230769230769 0 53.8461538461538 10.782682 NA 10.451501 7.987954 10.924930 12.688189 7.279156 12.069129 0.0077783 0.9906300 0.0589370 -1.0429000 -1.0398000 -0.0147860 -1.0681000 -1.0681000 -1.0300000 -1.0375000 -1.0375000 -1.0375000 0.0077783 0.0077783 0.9921900 -0.0089906 -0.0089906 -1.0531000 -1.0707000 -1.2929000 0.0307320 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.995 0.000 0.000 0.000 0.000 0.000 0.000 -1.021 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -1.038 -1.038 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.992 0.992 0.000 0.000 -0.146 -0.146 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.995 0.000 0.000 0.000 0.000 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60 0 NA 838 choroid stage iia t2a nx NA male 2013 yes white not hispanic or latino 4 4 3 2 4 3 6 2 0 0 0 4 4 0 0 4 0 0 4 4 0 0 0 0 0 4 4 0 0 4 6.242493e-07 2.080831e-07 29.1666666666667 8.33333333333333 16.6666666666667 4.16666666666667 41.6666666666667 11.868621 1.147502 10.483805 9.115613 10.471702 12.944291 4.580483 12.302593 2.335800 0.705130 -0.034904 -0.919870 -0.912440 -0.027808 0.023946 0.023946 0.027919 0.025949 0.041034 0.041034 -0.928520 -0.928520 0.703550 -0.018902 -0.018902 -0.946270 -0.946270 -0.946270 -0.034904 0.000 0.000 0.000 0.000 0.000 0.000 0.146 0.000 0.000 0.000 -0.909 0.000 0.000 0.000 0.000 -0.238 -0.238 -0.920 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.902 0.000 0.000 2.349 1.447 0.000 0.000 0.704 0.704 0.000 0.000 -0.105 -0.105 0.000 0.000 0.000 0.000 0.000 0.000 0.146 0.000 0.000 0.000 -0.909 0.000 0.000 0.000 0.000 -0.238 -0.238 -0.920 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.902 0.000 0.000 2.349 1.447 0.000 0.000 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1 2 2 3 2 1 2 1 6 0 0 4 0 0 0 0 6 0 4 0 0 0 6 0 0 4 0 0 0 0 2.080831e-07 2.427636e-07 21.4285714285714 14.2857142857143 14.2857142857143 28.5714285714286 21.4285714285714 10.304572 2.624148 9.823827 9.379042 10.137224 12.120675 8.627157 11.731982 0.0059700 0.4794200 -0.0067813 -0.0098185 -0.0098185 0.0000000 -0.4606700 -0.4606700 -0.4596100 -0.4596100 -0.4596100 -0.4596100 0.0059700 0.0059700 -0.4767000 -0.0066432 -0.0066432 -0.0063895 -0.0063895 -0.0200010 -0.0067813 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.460 -0.460 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.479 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.460 -0.460 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.003 0.479 0.000 0.000 0.000 0.000 6.7506869 11.2188521 5.9169352 3.4177040 8.6120815 8.3861488 10.6200156 9.7994128 12.3120548 14.6076705 12.3334679 9.2339487 12.0394735 10.0055530 11.7950808 3.1095779 7.2131188 7.8278774 5.5374421 9.6487399 10.4246229 6.5564677 11.6363132 8.7340721 8.9144805 7.5690125 8.8893911 5.2250589 9.0944741 3.5752397 10.8666933 0.7172981 1.3022313 10.2771187 4.5752458 8.4383627 4.6945459 8.6196390 11.4570443 9.836853 10.456200 3.240818 10.091760 8.652429 9.538240 13.164670 13.137487 9.689526 9.850406 10.852652 13.709051 10.550549 10.574467 9.590708 11.740325 12.433654 8.590708 10.687010 12.559123 11.775589 7.828399 6.887189 6.389689 11.764388 7.021044 7.540631 9.592245 9.781333 10.846547 11.965784 10.846869 7.232964 4.984052 5.580459 7.180788 7.079207 6.396743 12.141692 NA 11.941868 10.626407 8.550154 9.849191 10.550944 10.710910 12.257997 11.027308 9.143528 11.986975 TCGA-YZ-A982 79 0 NA 495 choroid stage iiib t4b nx mx female 2013 no white not hispanic or latino 3 4 2 3 2 3 6 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 8.670129e-07 3.468052e-08 34.6153846153846 11.5384615384615 15.3846153846154 7.69230769230769 30.7692307692308 12.433087 8.878960 8.792344 9.138827 10.139959 12.926965 8.919074 11.316532 1.25190000 0.63153000 0.63335000 -0.65389000 -0.65389000 1.18630000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00027728 0.00027728 0.62533000 0.60268000 0.60202000 -0.00650500 -0.00650500 -0.00650500 0.63335000 0.000 0.000 0.603 0.603 0.000 0.000 0.630 0.000 0.000 0.000 0.000 0.633 0.633 0.000 0.000 -0.609 -0.609 -0.650 0.000 0.596 0.596 0.624 0.657 0.713 0.713 0.000 0.000 0.000 0.000 -0.672 -0.672 1.252 0.000 0.000 0.000 0.625 0.625 0.000 0.000 0.000 0.000 0.000 0.000 0.603 0.603 0.000 0.000 0.630 0.000 0.000 0.000 0.000 0.633 0.633 0.000 0.000 -0.609 -0.609 -0.650 0.000 0.596 0.596 0.624 0.657 0.713 0.713 0.000 0.000 0.000 0.000 -0.672 -0.672 1.252 0.000 0.000 0.000 0.625 0.625 0.000 0.000 0.000 0.000 -0.1762506 12.3599245 0.8236678 6.1456061 8.7484897 12.2869461 11.1746164 10.3531078 7.1987171 13.9240110 11.1314472 4.9529625 7.8066708 8.2415299 9.3393770 3.2831069 6.0904639 7.4747289 6.5101771 10.1690824 10.6358545 6.9426177 13.4041714 8.5718702 7.8066708 2.1456122 9.0881199 4.2831069 8.6971212 6.5918619 9.5223818 3.9936019 2.1456122 10.4484726 6.0716039 9.2288187 8.1090795 9.1834267 11.5110529 11.091049 10.949736 2.631034 10.743285 9.235188 6.071604 12.664455 12.383293 9.626194 10.135426 10.989212 13.617281 6.127458 12.340362 8.601754 12.786935 13.243242 11.865679 12.166308 12.873696 10.990468 8.262469 6.834905 5.438386 12.096890 6.631032 4.347240 9.912465 10.650226 7.172406 11.647840 12.185895 7.968336 3.145612 7.088495 8.697121 4.777872 7.224556 13.446987 NA 11.531899 10.878282 7.718495 10.240675 11.272310 10.893127 11.546485 11.611172 7.889766 13.111678 TCGA-YZ-A983 51 0 NA 798 choroid stage iib t3a nx mx female 2013 no white not hispanic or latino 4 4 3 2 4 3 NA NA 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 0 0 0 4 0 0 0 6.242493e-07 1.734026e-07 26.0869565217391 8.69565217391304 13.0434782608696 13.0434782608696 39.1304347826087 11.6397417 0.3004166 10.1769654 9.5835368 10.7705988 12.7662698 5.8082435 12.2593635 0.96953000 0.00018632 -0.00990900 -0.00452200 -0.00452200 0.00254460 -0.00092251 -0.00092251 -0.00092251 0.00313360 0.00000000 0.00000000 -0.00037208 -0.00037208 0.00018632 -0.00064536 -0.00064536 0.00101830 -0.00783880 -0.00783880 -0.00990900 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.961 0.961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.961 0.961 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 -0.6994662 11.1819448 7.1891920 6.1584299 9.2848669 11.8195931 9.2877124 9.8337781 6.0008879 13.0656309 5.4297298 -0.6994662 -0.6994662 2.8854182 NA 4.5483750 9.1891915 8.2458921 7.1333385 11.2755798 10.8502330 5.7761830 12.9621151 8.9939353 7.1708134 2.4703807 8.2633443 4.7267114 7.9479069 4.3448427 10.5759909 1.3004752 -0.6994662 9.9878241 5.2311866 11.0469627 7.8626907 8.6291234 13.2854008 9.882590 10.316560 5.387910 10.184619 8.213338 8.081808 12.468807 13.465277 10.523243 9.634722 10.954189 12.555477 8.387911 12.611203 9.046963 13.810842 12.193181 9.729855 10.534667 13.107300 11.071521 7.534068 10.100539 6.666771 11.496743 7.429731 3.300446 9.716190 10.034311 8.937073 11.948132 10.313073 10.520827 3.944306 7.555760 8.018125 6.055337 4.585852 11.937753 NA 11.624910 10.641967 8.291970 9.413018 10.130171 10.956426 11.184237 11.069046 9.133338 11.976405 TCGA-YZ-A984 50 1 1396 NA choroid stage iib t3a nx mx female 2011 no white not hispanic or latino 3 3 2 3 1 1 2 4 6 0 0 0 0 0 0 0 6 0 0 0 0 0 6 0 0 0 0 0 0 0 3.468052e-07 1.040415e-07 23.0769230769231 15.3846153846154 23.0769230769231 7.69230769230769 30.7692307692308 8.8635210 -0.1079588 8.6733370 9.3307692 9.4037300 11.9394422 8.6232966 10.9178091 -0.0110050 0.6343400 0.5878200 -0.0176120 -0.0100400 0.5595400 -0.6641700 -0.6641700 -0.6641700 -0.6641700 -0.6641700 -0.6641700 -0.0092119 -0.0092119 0.6343400 0.6244900 -0.6903300 -0.0265230 -0.0265230 -0.0265230 0.5878200 0.000 0.000 0.624 -0.054 0.627 0.627 0.000 0.000 0.000 0.000 0.000 0.588 0.588 0.000 0.000 0.000 0.000 0.000 0.000 0.592 0.592 0.610 0.587 0.589 0.589 -0.664 -0.664 0.000 0.000 0.648 0.648 0.000 0.000 0.640 0.640 0.634 0.634 0.629 0.000 0.133 0.133 0.000 0.000 0.624 -0.054 0.627 0.627 0.000 0.000 0.000 0.000 0.000 0.588 0.588 0.000 0.000 0.000 0.000 0.000 0.000 0.592 0.592 0.610 0.587 0.589 0.589 -0.664 -0.664 0.000 0.000 0.648 0.648 0.000 0.000 0.640 0.640 0.634 0.634 0.629 0.000 0.133 0.133 NA 11.1255971 3.6993295 3.0618971 8.9607558 10.6460298 10.9814279 9.9647800 7.1207957 13.1225984 11.6075105 5.7499579 8.6928773 7.3514093 7.2670170 2.4769519 6.5213335 7.1975833 6.2842957 10.1183896 10.6642920 5.5066876 12.4872349 7.8227149 7.7374677 NA 8.4580313 3.2139071 8.3514093 4.5924152 10.2506286 1.8919635 -0.1079588 10.5403350 5.2139071 5.6733359 3.8919732 8.1819965 10.9900096 11.170427 10.360602 2.213907 10.805615 9.036636 11.087965 12.408662 12.656020 8.318242 9.484434 11.319290 13.405828 6.101432 12.217564 8.588945 12.100517 11.555091 9.867825 11.602353 12.737467 10.509445 6.990010 4.646865 4.936369 10.730394 6.051041 5.592418 8.595881 10.310884 10.111146 11.084887 11.370747 7.908786 6.834493 5.783153 8.917117 5.619897 2.476952 12.622235 NA 11.594150 10.505767 6.476941 8.775965 11.629647 10.489099 12.246778 11.376297 7.731181 12.978114 TCGA-YZ-A985 41 0 NA 1184 choroid stage iiia t4a nx mx female 2012 no white not hispanic or latino 1 3 1 3 1 1 4 4 2 0 0 4 4 0 4 4 2 0 4 4 0 4 2 0 0 4 4 0 4 4 1.362944e-05 5.756966e-06 96.2897526501767 0.706713780918728 1.41342756183746 0.88339222614841 0.706713780918728 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7.599693 7.429768 2.181834 8.153384 2.503781 8.591232 3.503769 9.896086 1.766807 1.181866 10.452136 7.170525 5.574159 2.181834 8.608105 12.030072 10.935057 10.263990 2.503781 10.695568 8.637168 10.892647 12.621152 12.487902 9.195861 9.298185 10.871839 12.569050 5.429767 12.483337 8.425015 12.101821 12.766099 9.840052 11.484480 12.814382 10.397374 7.381513 6.181840 4.825699 11.579515 6.766803 6.705403 8.875328 10.583787 10.795630 11.792865 11.213886 8.959918 4.574156 6.823097 7.909761 5.136035 4.088735 13.018088 NA 11.226235 9.703441 7.147625 9.300730 11.171235 10.557966 11.925413 10.822989 7.088731 13.428730 all_p NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.19582528301437e-07 9.30659435434575e-07 9.59517481951069e-07 9.84774300547196e-07 1.02726121389142e-06 1.0368977796801e-06 1.05376631634801e-06 1.07047142365166e-06 1.12032715032253e-06 1.14090792841273e-06 2.82895487052306e-08 8.9292700151843e-08 1.03265374074519e-07 2.56562147581526e-07 2.83593169295007e-07 1.84762309253395e-06 4.20690304523694e-06 9.69233857176082e-06 9.36641286174511e-06 9.31494584539922e-06 9.3421474956472e-06 9.34204365622759e-06 9.36853855010809e-06 9.41140782843334e-06 9.42506705306384e-06 9.42400310588648e-06 9.44778658929879e-06 9.47735640776931e-06 9.50503364568036e-06 9.46356155412945e-07 9.9594382716198e-07 1.00832307365463e-06 1.02731808602407e-06 1.05607618812174e-06 1.21752731064577e-06 1.22948563770048e-06 1.62137091037787e-06 1.98582242662825e-06 2.08658451235701e-06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA all_q NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.3e-10 6.15e-06 4.49e-12 4.49e-12 4.49e-12 0.05879115 0.05879115 4.49e-12 6.686685e-11 2.30488e-10 6.686685e-11 8.848037e-11 0.05879115 0.05879115 2.576576e-05 0.005856445 6.084333e-13 6.084333e-13 6.084333e-13 0.05879115 0.05879115 1.823841e-11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.0409e-06 8.8879e-13 0.054583 0.00034394 0.061261 0.024639 0.086468 0.013477 0.0051421 0.09134 0.0049422 0.023516 0.0054289 0.0049422 0.046377 4.661e-23 0.023516 0.016325 0.058855 0.12091 0.22482 0.985 0.985 0.00876 0.0241 0.983 0.983 0.354 0.983 0.983 0.899 0.983 0.0573 0.0573 0.983 0.983 0.983 0.983 0.983 0.147 0.0497 0.0256 5.78e-07 0.658 0.0127 0.143 0.983 0.983 0.127 0.983 0.983 0.983 0 1.73e-05 0.0241 0.122 0 0 0.438 0.899 0.00129 0.0117 0.984 0.984 0.984 0.984 0.984 0.984 0.984 0.984 0.984 0.984 6.35e-09 0.984 0.984 0.984 0.984 0.984 0.984 2.99e-11 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