Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1q gain 8 (10%) 72 0.81432 0.895 0.49412 0.684 0.80323 0.887 0.80262 0.887 0.37358 0.569 0.058759 0.228 0.83779 0.908 0.95172 0.991 2p gain 10 (12%) 70 0.02862 0.145 0.54917 0.737 0.059099 0.228 0.11689 0.341 0.22388 0.45 0.85098 0.92 0.70558 0.843 0.00312 0.0256 2q gain 8 (10%) 72 0.01069 0.0658 0.22244 0.45 0.053829 0.222 0.1113 0.332 0.059259 0.228 0.19398 0.415 0.29797 0.506 7.9999e-05 0.0011 4p gain 7 (9%) 73 0.00143 0.0133 0.24464 0.469 0.14349 0.361 0.12036 0.341 0.32934 0.531 0.3679 0.568 0.32634 0.531 0.43295 0.637 4q gain 4 (5%) 76 0.0057499 0.0442 0.3087 0.513 0.099399 0.331 0.34488 0.542 0.62759 0.789 0.82582 0.901 0.78946 0.883 0.6275 0.789 5p gain 3 (4%) 77 0.18833 0.412 0.1795 0.406 0.2904 0.505 0.10894 0.332 0.2807 0.496 0.27842 0.496 0.48703 0.679 0.77022 0.88 5q gain 3 (4%) 77 0.18749 0.412 0.17952 0.406 0.29212 0.505 0.10754 0.332 0.28137 0.496 0.27662 0.496 0.4878 0.679 0.77186 0.88 6p gain 38 (48%) 42 0.04158 0.179 0.0066999 0.0496 0.00034 0.00389 0.00013 0.00168 2e-05 0.000308 9.9999e-06 0.000174 0.00027 0.00318 9.9999e-06 0.000174 6q gain 16 (20%) 64 0.6038 0.781 0.01439 0.0822 0.0191 0.105 0.00101 0.0101 0.00088999 0.00913 2e-04 0.00242 0.01006 0.0643 0.00088999 0.00913 7p gain 9 (11%) 71 0.24544 0.469 0.40323 0.602 1 1 0.7411 0.877 0.3396 0.539 0.18079 0.406 0.89853 0.958 0.46511 0.662 7q gain 8 (10%) 72 0.10278 0.332 0.11972 0.341 0.95705 0.994 0.44793 0.649 0.37326 0.569 0.33039 0.531 0.97365 1 0.77805 0.883 8p gain 39 (49%) 41 9.9999e-06 0.000174 0.00011 0.00147 0.00108 0.0105 5.9999e-05 0.000857 0.00275 0.0239 0.00051999 0.00562 0.03165 0.154 0.0082599 0.056 8q gain 53 (66%) 27 9.9999e-06 0.000174 2e-05 0.000308 0.00017 0.00212 9.9999e-06 0.000174 2e-05 0.000308 9.9999e-06 0.000174 0.0099499 0.0643 5.9999e-05 0.000857 9p gain 5 (6%) 75 0.48174 0.679 0.092579 0.325 0.2947 0.505 0.22486 0.45 0.28788 0.503 1 1 0.29825 0.506 0.56578 0.757 9q gain 4 (5%) 76 0.80417 0.887 0.16247 0.385 0.67816 0.827 0.53661 0.723 0.3303 0.531 0.75463 0.88 0.28639 0.502 0.47319 0.669 11p gain 10 (12%) 70 0.0082399 0.056 0.16273 0.385 0.73047 0.867 0.38273 0.577 0.6457 0.804 0.30938 0.513 0.13414 0.358 0.0063799 0.0482 11q gain 10 (12%) 70 0.098979 0.331 0.72678 0.865 1 1 0.82865 0.901 0.69894 0.84 0.11649 0.341 0.094239 0.328 0.03826 0.169 12p gain 3 (4%) 77 0.14078 0.358 0.18005 0.406 0.10486 0.332 0.01013 0.0643 0.091029 0.322 0.27121 0.496 0.10972 0.332 0.13966 0.358 12q gain 3 (4%) 77 0.13983 0.358 0.18176 0.406 0.10534 0.332 0.0091899 0.0613 0.090329 0.322 0.27362 0.496 0.10899 0.332 0.13782 0.358 13q gain 6 (8%) 74 0.02509 0.132 0.68263 0.83 0.87806 0.942 0.75122 0.88 0.91433 0.964 0.5191 0.705 0.00156 0.0139 0.0077699 0.0553 14q gain 3 (4%) 77 0.1415 0.358 1 1 0.10448 0.332 0.32582 0.531 0.91619 0.964 0.59202 0.776 0.68885 0.832 0.5834 0.769 16p gain 4 (5%) 76 1 1 0.45474 0.652 0.82831 0.901 0.43826 0.642 0.78797 0.883 0.47362 0.669 0.38654 0.579 0.74834 0.88 17p gain 8 (10%) 72 0.00035 0.00389 0.26048 0.487 0.45713 0.653 0.21708 0.45 0.60247 0.781 0.058009 0.228 0.1887 0.412 0.03959 0.172 17q gain 9 (11%) 71 0.00146 0.0133 0.22299 0.45 0.32977 0.531 0.30618 0.513 0.5319 0.719 0.0283 0.145 0.28133 0.496 0.0383 0.169 20p gain 8 (10%) 72 0.096819 0.331 0.27977 0.496 0.1053 0.332 0.21955 0.45 0.92696 0.971 0.23866 0.466 0.20427 0.432 0.11871 0.341 20q gain 9 (11%) 71 0.069079 0.255 0.61645 0.788 0.04229 0.18 0.057809 0.228 0.68545 0.831 0.15642 0.379 0.23784 0.466 0.42696 0.63 21q gain 14 (18%) 66 0.03305 0.157 0.16769 0.392 0.069469 0.255 0.01354 0.0785 0.37326 0.569 0.29568 0.505 0.15087 0.374 0.10591 0.332 22q gain 5 (6%) 75 0.13436 0.358 0.12303 0.344 0.10686 0.332 0.071759 0.261 0.12809 0.346 0.24606 0.469 0.00313 0.0256 0.033 0.157 xp gain 10 (12%) 70 0.18969 0.412 0.03628 0.168 0.79553 0.886 0.1404 0.358 0.053259 0.222 0.37399 0.569 0.03693 0.168 0.098469 0.331 xq gain 9 (11%) 71 0.25979 0.487 0.11093 0.332 0.62877 0.789 0.02 0.108 0.055099 0.223 0.1023 0.332 0.098359 0.331 0.03156 0.154 1p loss 19 (24%) 61 0.3031 0.512 0.26177 0.487 0.078519 0.283 0.6625 0.813 0.9668 1 0.27944 0.496 0.01486 0.0837 0.03019 0.151 1q loss 3 (4%) 77 0.38227 0.577 0.1788 0.406 0.16164 0.385 0.32503 0.531 0.19235 0.414 0.04572 0.193 0.16683 0.392 0.01196 0.0714 3p loss 43 (54%) 37 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 3q loss 43 (54%) 37 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 9.9999e-06 0.000174 4q loss 3 (4%) 77 0.78867 0.883 0.77118 0.88 0.89217 0.954 0.60514 0.781 0.91618 0.964 0.27381 0.496 0.64228 0.803 0.3093 0.513 5q loss 3 (4%) 77 0.78777 0.883 0.11903 0.341 0.24563 0.469 0.17001 0.395 0.45512 0.652 0.87089 0.939 0.03855 0.169 0.58211 0.769 6q loss 17 (21%) 63 9.9999e-06 0.000174 0.01053 0.0658 0.19045 0.412 0.00465 0.0365 0.12001 0.341 0.22849 0.452 0.03374 0.159 0.00384 0.0307 8p loss 4 (5%) 76 0.80532 0.887 0.75564 0.88 0.62266 0.789 0.67364 0.824 0.44666 0.649 0.62939 0.789 0.69349 0.836 0.34525 0.542 8q loss 3 (4%) 77 0.4845 0.679 0.66027 0.813 1 1 0.78912 0.883 0.7622 0.88 0.77186 0.88 0.94968 0.991 0.58462 0.769 9p loss 8 (10%) 72 0.00138 0.0131 0.12742 0.346 0.33771 0.538 0.15365 0.377 0.33608 0.538 0.35455 0.55 0.21727 0.45 0.29277 0.505 9q loss 7 (9%) 73 0.0076899 0.0553 0.12648 0.346 0.70622 0.843 0.23889 0.466 0.42225 0.626 0.58439 0.769 0.15134 0.374 0.4495 0.649 12p loss 3 (4%) 77 0.64921 0.804 0.6619 0.813 0.24151 0.469 0.79009 0.883 0.6095 0.781 0.51967 0.705 0.90364 0.961 0.77002 0.88 13q loss 3 (4%) 77 0.87474 0.941 0.18135 0.406 0.3516 0.549 0.60232 0.781 0.60875 0.781 1 1 0.48916 0.679 0.31455 0.52 15q loss 4 (5%) 76 0.34274 0.542 0.25132 0.476 1 1 0.82664 0.901 0.44814 0.649 0.91033 0.964 0.51509 0.703 0.62908 0.789 16p loss 3 (4%) 77 0.2596 0.487 0.49951 0.687 0.35339 0.55 0.60031 0.781 0.7614 0.88 1 1 1 1 1 1 16q loss 16 (20%) 64 0.0218 0.116 0.02772 0.144 0.15443 0.377 0.01313 0.0772 0.19491 0.415 0.12612 0.346 0.069199 0.255 0.16053 0.385 19p loss 3 (4%) 77 0.2215 0.45 0.064149 0.244 0.50293 0.689 1 1 0.76082 0.88 0.22475 0.45 0.12384 0.344 0.13966 0.358 19q loss 3 (4%) 77 0.22377 0.45 0.064939 0.245 0.49922 0.687 1 1 0.75998 0.88 0.22805 0.452 0.12337 0.344 0.13928 0.358 xp loss 12 (15%) 68 0.18545 0.412 0.055149 0.223 0.40578 0.603 0.26513 0.491 0.9265 0.971 0.58036 0.769 0.03682 0.168 0.01119 0.0678 xq loss 13 (16%) 67 0.27343 0.496 0.01551 0.0862 0.21848 0.45 0.14647 0.366 0.64904 0.804 0.38358 0.577 0.0078799 0.0553 0.00313 0.0256