Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold 01BR001 01BR008 01BR009 01BR010 01BR015 01BR017 01BR018 01BR020 01BR023 01BR025 01BR026 01BR027 01BR030 01BR031 01BR032 01BR033 01BR040 01BR042 01BR043 03BR002 03BR004 03BR005 03BR006 03BR010 03BR011 03BR013 05BR001 05BR003 05BR004 05BR005 05BR009 05BR016 05BR026 05BR029 05BR038 05BR042 05BR043 05BR044 05BR045 06BR003 06BR005 06BR006 06BR014 09BR001 09BR004 09BR005 09BR007 11BR003 11BR004 11BR006 11BR009 11BR010 11BR011 11BR012 11BR013 11BR014 11BR015 11BR016 11BR017 11BR018 11BR019 11BR020 11BR022 11BR023 11BR024 11BR025 11BR027 11BR028 11BR030 11BR031 11BR032 11BR036 11BR038 11BR040 11BR042 11BR043 11BR044 11BR047 11BR049 11BR050 11BR051 11BR053 11BR054 11BR055 11BR056 11BR058 11BR059 11BR060 11BR072 11BR073 11BR074 11BR075 11BR080 13BR009 14BR005 14BR008 14BR014 15BR003 16BR012 18BR002 18BR003 18BR004 18BR006 18BR007 18BR009 18BR010 18BR016 18BR017 18BR019 20BR001 20BR002 20BR005 20BR006 20BR007 20BR008 21BR001 21BR002 21BR010 22BR005 22BR006 CPT000814 CPT001846 Amplification Peak 1 1p35.2 chr1:32042906-32101921(probes 2507:2513) chr1:32050237-32092446(probes 2508:2512) chr1:32050237-32120870(probes 2508:2515) 0.056151 0.20111 0: t<0.1; 1: 0.10.9 2 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 1 0 0 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 Amplification Peak 2 1p34.2 chr1:40820677-46134498(probes 3207:3723) chr1:43779672-43830954(probes 3470:3475) chr1:41327523-45336225(probes 3255:3633) 0.012035 0.087521 0: t<0.1; 1: 0.10.9 2 1 2 1 1 0 1 0 0 0 1 1 0 2 1 1 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 1 0 1 1 0 1 1 Amplification Peak 3 1q23.2 chr1:153265039-175066685(probes 10224:12314) chr1:159277631-159783311(probes 10806:10856) chr1:120524472-249250621(probes 9931:18180) 2.6341e-11 1.2177e-06 0: t<0.1; 1: 0.10.9 1 1 2 1 1 0 2 1 0 0 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 0 0 2 1 1 1 1 1 0 1 2 1 2 1 1 1 0 1 2 2 1 2 1 1 1 0 1 0 2 1 0 1 0 0 1 0 1 1 2 2 0 1 0 1 0 1 0 1 0 1 1 0 1 1 1 2 0 1 1 0 1 2 1 0 1 1 1 2 2 1 0 1 2 1 1 1 1 1 0 0 1 1 1 0 2 1 2 1 1 1 1 1 0 1 2 1 Amplification Peak 4 1q42.13 chr1:154154497-237547920(probes 10311:17581) chr1:226825417-227387305(probes 16660:16714) chr1:120524472-249250621(probes 9931:18180) 9.1629e-09 0.002389 0: t<0.1; 1: 0.10.9 2 1 1 1 1 1 1 0 0 1 1 0 0 1 1 1 1 1 1 1 1 1 2 1 2 1 0 0 2 0 1 1 1 0 1 1 2 0 1 2 1 1 0 1 1 2 2 1 1 1 1 2 1 0 2 1 0 1 0 0 1 1 1 1 1 2 0 1 0 1 1 1 0 1 0 1 1 0 1 1 1 1 0 2 1 0 0 2 1 1 1 1 1 2 2 1 0 1 2 1 1 1 1 1 0 0 1 0 0 0 2 1 2 1 1 1 1 1 2 1 1 0 Amplification Peak 5 2q11.1 chr2:95471289-99976661(probes 24936:25253) chr2:96688702-96781215(probes 25023:25024) chr2:95847333-98460409(probes 24980:25131) 0.027642 0.027642 0: t<0.1; 1: 0.10.9 1 0 1 1 0 1 2 1 0 0 0 1 0 1 0 0 2 1 1 0 0 0 1 2 0 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 1 0 0 1 0 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 Amplification Peak 6 3q26.32 chr3:178552266-178969743(probes 49529:49552) chr3:178561070-178935793(probes 49530:49547) chr3:176689752-179133293(probes 49527:49564) 0.0024062 0.0024062 0: t<0.1; 1: 0.10.9 0 0 1 0 2 1 1 0 0 1 1 1 1 1 0 1 0 2 1 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 2 0 0 0 0 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 2 1 0 2 0 0 0 1 1 0 0 0 1 0 0 1 1 1 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 2 0 1 2 0 1 1 1 1 1 1 1 Amplification Peak 7 6p22.1 chr6:1-64420472(probes 78754:83371) chr6:30113820-30228356(probes 81187:81193) chr6:29759909-30240406(probes 81179:81196) 0.21301 0.21301 0: t<0.1; 1: 0.10.9 1 1 2 1 1 0 1 1 0 0 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 1 Amplification Peak 8 7q36.1 chr7:149475189-149529933(probes 101991:101999) chr7:149477495-149524966(probes 101992:101997) chr7:148984762-150031138(probes 101945:102003) 0.0018785 0.0018785 0: t<0.1; 1: 0.10.9 1 1 1 0 0 1 0 1 0 1 1 0 1 2 0 1 1 2 0 2 0 0 1 1 0 0 0 0 0 1 1 1 0 1 1 1 2 0 0 1 1 1 1 0 1 2 1 0 0 1 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 1 1 1 1 2 2 0 0 0 0 1 0 1 1 1 0 1 1 0 0 1 0 1 0 1 1 0 1 1 0 0 1 0 1 1 1 0 0 1 1 0 1 0 1 1 0 1 1 1 0 1 0 1 0 2 Amplification Peak 9 8p11.23 chr8:37422222-37917437(probes 104809:104834) chr8:37672451-37732436(probes 104820:104826) chr8:35453125-42403493(probes 104768:105146) 2.6381e-08 2.6381e-08 0: t<0.1; 1: 0.10.9 2 1 0 1 0 0 0 2 2 1 0 0 1 1 0 0 1 2 0 2 0 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 1 1 0 2 0 0 0 2 2 1 2 0 0 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 2 0 0 0 1 0 0 0 0 0 0 1 1 1 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 1 1 1 1 Amplification Peak 10 8q24.21 chr8:126448482-130771681(probes 110816:110856) chr8:127569169-128968800(probes 110817:110849) chr8:72383130-146364022(probes 106966:111958) 5.1296e-14 5.1296e-14 0: t<0.1; 1: 0.10.9 2 1 2 1 2 1 2 2 2 1 2 2 1 1 0 1 1 2 1 1 2 0 2 0 0 2 1 0 0 1 0 1 0 2 0 1 2 1 1 1 2 1 1 0 2 0 1 1 1 1 1 1 2 0 2 1 2 1 1 0 0 1 0 2 1 2 0 1 1 1 0 2 0 0 1 2 2 1 1 0 1 2 0 0 2 1 1 0 0 2 1 1 2 2 2 0 2 0 0 1 0 0 2 1 0 2 1 1 0 2 2 1 2 2 1 2 0 0 1 1 1 1 Amplification Peak 11 9p24.3 chr9:1-35194(probes 111959:111964) chr9:1-34837(probes 111959:111963) chr9:1-793959(probes 111959:111966) 0.0087466 0.0087466 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 1 1 0 0 0 0 0 1 2 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 2 2 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 Amplification Peak 12 10p15.1 chr10:2687843-13221943(probes 120663:121171) chr10:4872952-5037535(probes 120733:120749) chr10:1-14573851(probes 120515:121254) 2.2074e-05 2.2074e-05 0: t<0.1; 1: 0.10.9 1 1 1 0 0 1 1 1 0 1 1 1 0 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 1 2 1 0 2 1 0 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 1 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 0 1 0 2 0 Amplification Peak 13 11p13 chr11:34064144-36669635(probes 132357:132565) chr11:35684995-36322773(probes 132485:132538) chr11:31131859-42220099(probes 132092:132570) 0.00016723 0.00018287 0: t<0.1; 1: 0.10.9 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 2 1 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 2 1 0 1 1 0 0 0 2 2 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 Amplification Peak 14 11q13.3 chr11:69914979-70275188(probes 134327:134363) chr11:70026137-70049708(probes 134337:134337) chr11:66555688-83574140(probes 134065:135143) 9.3191e-18 9.5491e-18 0: t<0.1; 1: 0.10.9 0 0 0 0 1 0 2 0 1 0 0 2 0 1 2 0 0 2 0 0 0 0 0 2 2 2 0 1 0 0 0 0 2 0 0 1 1 0 2 1 0 0 0 2 2 1 1 0 0 0 0 2 0 0 1 0 2 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 1 Amplification Peak 15 12p13.33 chr12:1-92091(probes 138932:138937) chr12:1-90952(probes 138932:138936) chr12:1-7505087(probes 138932:139489) 1.1773e-13 4.1601e-13 0: t<0.1; 1: 0.10.9 1 1 1 0 0 0 1 2 0 0 1 0 0 0 1 0 1 1 0 0 0 0 2 2 0 0 0 0 0 0 0 2 0 2 0 1 2 2 2 0 1 0 0 0 1 0 1 0 0 0 2 0 0 1 2 0 0 1 1 0 2 0 0 1 1 1 0 2 2 0 0 0 0 0 0 2 0 2 0 0 0 2 0 1 2 0 1 2 0 1 0 0 2 0 0 2 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 2 1 0 Amplification Peak 16 12p11.21 chr12:29911327-32744825(probes 141178:141314) chr12:31862388-32136390(probes 141263:141263) chr12:29920920-39348983(probes 141179:141348) 0.0028393 0.0090891 0: t<0.1; 1: 0.10.9 0 2 1 0 0 0 0 1 0 0 1 1 0 2 1 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 0 2 0 Amplification Peak 17 13q34 chr13:111362010-115169878(probes 155413:155623) chr13:113883798-114844944(probes 155565:155608) chr13:103411262-115169878(probes 154751:155623) 0.00073724 0.00073724 0: t<0.1; 1: 0.10.9 0 1 2 1 1 0 2 0 0 0 1 1 0 1 0 2 0 0 1 0 1 0 2 0 0 0 0 0 0 0 1 0 0 2 0 2 1 1 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 Amplification Peak 18 14q11.2 chr14:1-27065790(probes 155624:156100) chr14:21449220-21488188(probes 155696:155698) chr14:1-29237220(probes 155624:156101) 0.011108 0.015772 0: t<0.1; 1: 0.10.9 1 1 1 0 1 0 1 0 1 1 1 1 1 1 0 0 0 2 0 0 1 0 2 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 1 0 1 0 0 0 0 0 0 1 0 2 0 1 1 1 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 1 0 0 1 0 1 Amplification Peak 19 14q32.31 chr14:101505145-101533099(probes 161973:161980) chr14:101518824-101530873(probes 161976:161979) chr14:101514278-102023794(probes 161974:161982) 0.088008 0.13469 0: t<0.1; 1: 0.10.9 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 2 2 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 Amplification Peak 20 15q26.3 chr15:88999049-102531392(probes 167757:168760) chr15:102506353-102531392(probes 168754:168760) chr15:102506353-102531392(probes 168754:168760) 0.071981 0.071981 0: t<0.1; 1: 0.10.9 0 0 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 1 0 0 Amplification Peak 21 16p13.3 chr16:1-2831549(probes 168761:168944) chr16:766592-904169(probes 168773:168776) chr16:1-2851436(probes 168761:168946) 0.015772 0.015772 0: t<0.1; 1: 0.10.9 0 1 0 0 1 0 2 1 0 1 1 0 1 1 0 0 1 1 0 1 2 1 1 0 1 0 0 0 2 1 1 0 0 0 0 1 0 1 2 1 2 0 2 1 1 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 1 0 1 2 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 2 1 2 0 1 0 0 2 1 1 0 0 2 1 0 1 0 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 1 0 1 1 1 0 1 1 1 Amplification Peak 22 17q12 chr17:37677184-38032998(probes 175979:176013) chr17:37842225-37903076(probes 175997:176002) chr17:35993384-39334965(probes 175838:176128) 1.9403e-22 3.2091e-18 0: t<0.1; 1: 0.10.9 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 2 0 0 1 1 0 0 2 1 2 0 1 2 2 1 0 2 1 0 2 2 0 0 0 0 0 0 0 2 0 1 0 0 2 0 2 2 1 0 1 2 0 0 0 1 0 0 0 0 1 0 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 2 0 1 2 0 0 1 Amplification Peak 23 17q24.2 chr17:64299057-67510890(probes 177926:178142) chr17:65040151-65074534(probes 177963:177963) chr17:54939596-70643761(probes 177082:178155) 3.1992e-07 0.0035335 0: t<0.1; 1: 0.10.9 1 0 0 0 0 1 1 1 2 1 0 0 1 0 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 1 0 0 2 1 0 0 2 0 0 1 0 0 1 1 2 0 2 0 0 0 0 0 0 1 0 1 0 1 2 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 2 0 1 0 1 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 Amplification Peak 24 19q13.13 chr19:33639748-40881781(probes 186373:187089) chr19:38202516-38709198(probes 186819:186862) chr19:37838739-40895576(probes 186786:187091) 0.004807 0.004807 0: t<0.1; 1: 0.10.9 0 0 1 0 1 2 2 2 0 0 2 1 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 2 0 1 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 0 Amplification Peak 25 20q13.31 chr20:50775407-56740418(probes 192041:192409) chr20:56137776-56188264(probes 192351:192356) chr20:50721230-57591050(probes 192039:192478) 0.0015232 0.0015232 0: t<0.1; 1: 0.10.9 0 1 1 1 1 0 0 1 2 1 0 0 0 0 0 1 1 0 1 1 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 2 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 1 1 1 1 1 0 2 1 2 0 1 0 0 1 1 1 0 1 0 1 2 0 1 1 1 1 1 0 0 0 1 1 1 0 0 1 0 1 2 0 0 2 1 1 1 0 2 0 0 1 0 1 1 1 1 0 0 1 0 1 1 Deletion Peak 1 1p36.21 chr1:12677257-17346451(probes 874:1167) chr1:13931375-14037373(probes 898:907) chr1:1-40376603(probes 1:3167) 1.8666e-11 1.8666e-11 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 1 0 1 1 0 1 1 1 1 0 0 0 1 1 1 0 1 1 1 0 1 0 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 1 0 1 1 0 1 1 1 0 1 0 1 1 0 0 0 0 1 1 1 1 1 1 0 0 0 1 1 0 0 1 1 0 1 1 1 0 1 0 0 0 Deletion Peak 2 1q25.1 chr1:174985330-175134711(probes 12307:12322) chr1:175024905-175134711(probes 12311:12322) chr1:175054587-175125154(probes 12314:12321) 4.1592e-05 0.0010767 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 Deletion Peak 3 1q42.13 chr1:228346121-228806043(probes 16780:16807) chr1:228354622-228806043(probes 16781:16807) chr1:228451955-228461586(probes 16795:16796) 0.013587 0.096339 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 Deletion Peak 4 2q11.2 chr2:99815771-100022927(probes 25247:25262) chr2:99824974-99977946(probes 25248:25254) chr2:99944049-99976661(probes 25252:25253) 2.5799e-58 2.9385e-56 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 Deletion Peak 5 2q22.3 chr2:145088480-148693935(probes 28571:28916) chr2:146074346-148482824(probes 28665:28899) chr2:145270159-148683945(probes 28592:28915) 8.6777e-07 0.025679 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 Deletion Peak 6 3p14.3 chr3:49934011-78174118(probes 40481:42624) chr3:57080154-57128329(probes 41193:41196) chr3:49934011-77637035(probes 40481:42570) 0.00046358 0.00046358 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 1 1 0 1 0 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 1 0 Deletion Peak 7 3q29 chr3:194071059-198022430(probes 50693:50870) chr3:196220679-198022430(probes 50834:50870) chr3:194180674-198022430(probes 50706:50870) 0.021155 0.020638 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 Deletion Peak 8 4p15.32 chr4:1-41263759(probes 50871:53543) chr4:15951269-16097273(probes 51942:51955) chr4:8621168-36099130(probes 51524:53118) 0.0060174 0.0057187 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 0 1 0 1 0 0 1 1 0 1 0 1 1 0 1 1 0 0 0 0 1 0 1 0 0 0 1 1 0 1 1 1 1 0 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 1 1 1 0 0 1 0 0 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 1 Deletion Peak 9 4q25 chr4:113435945-113970926(probes 58993:59011) chr4:113568236-113970926(probes 59009:59011) chr4:113569071-113980885(probes 59011:59012) 3.8865e-18 2.2061e-16 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 Deletion Peak 10 4q33 chr4:170191694-170549655(probes 63660:63700) chr4:170301489-170549655(probes 63671:63700) chr4:170428031-170455441(probes 63686:63687) 2.3986e-05 0.00081881 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 1 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 0 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 1 0 Deletion Peak 11 5q13.2 chr5:68721792-70888563(probes 69640:69662) chr5:68731562-70761362(probes 69641:69642) chr5:56233466-81313402(probes 68672:70628) 5.8426e-05 5.8426e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 1 1 1 1 1 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 1 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 Deletion Peak 12 6p22.1 chr6:27370258-27925489(probes 80984:81002) chr6:27430098-27839887(probes 80990:80996) chr6:25983655-27944598(probes 80910:81004) 1.6717e-14 1.6717e-14 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 1 0 1 1 0 0 1 0 1 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 Deletion Peak 13 6q26 chr6:160931352-161127530(probes 90617:90631) chr6:160940811-161127530(probes 90618:90631) chr6:155136901-171115067(probes 90092:91081) 1.8676e-09 1.9081e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 Deletion Peak 14 7q11.23 chr7:74867286-75038052(probes 96170:96189) chr7:74973526-75038052(probes 96183:96189) chr7:55863696-75216110(probes 95307:96214) 6.6878e-33 3.5841e-31 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 0 Deletion Peak 15 7q22.1 chr7:99801692-99974170(probes 97957:97972) chr7:99913438-99964267(probes 97970:97971) chr7:99831263-99984073(probes 97960:97973) 2.8656e-06 0.013587 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 Deletion Peak 16 8p23.1 chr8:1-8650017(probes 102622:102906) chr8:6774939-8570310(probes 102897:102898) chr8:1-37914688(probes 102622:104833) 6.8189e-18 1.4637e-10 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 1 1 1 1 1 0 1 0 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 1 1 Deletion Peak 17 8p21.2 chr8:24350073-25111178(probes 104107:104117) chr8:24793568-25111178(probes 104114:104117) chr8:1-37914688(probes 102622:104833) 1.1138e-14 4.5414e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 1 1 1 1 1 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 1 1 1 0 0 1 1 1 1 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 1 1 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 1 Deletion Peak 18 9p21.3 chr9:20613198-26806001(probes 113086:113356) chr9:21471551-22019612(probes 113161:113183) chr9:19622279-26129928(probes 113056:113313) 0.00051218 0.00048739 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 1 1 1 1 1 0 1 0 1 1 1 0 0 0 0 0 1 0 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 Deletion Peak 19 9q22.32 chr9:99060722-99219443(probes 116992:117010) chr9:99068340-99160460(probes 116993:117004) chr9:99083575-99180121(probes 116995:117006) 0.011689 0.015349 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 0 0 1 0 1 1 0 1 1 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 1 Deletion Peak 20 9q34.13 chr9:130904022-141213431(probes 119626:120514) chr9:135446658-135979089(probes 120066:120114) chr9:134585039-135996449(probes 119993:120116) 0.16518 0.23266 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 1 0 1 1 0 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 1 Deletion Peak 21 10p13 chr10:11375582-32740709(probes 120998:122638) chr10:14958481-16576190(probes 121296:121382) chr10:14563248-19641079(probes 121254:121580) 0.055863 0.058713 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 0 1 Deletion Peak 22 10q21.3 chr10:54053539-135534747(probes 123715:129850) chr10:70209895-70256989(probes 124670:124673) chr10:70206112-70305942(probes 124669:124678) 0.10905 0.11098 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 Deletion Peak 23 11p15.5 chr11:1-470166(probes 129851:129859) chr11:170384-470166(probes 129856:129859) chr11:1-480096(probes 129851:129860) 2.3976e-07 3.5611e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 Deletion Peak 24 11p11.12 chr11:48371312-56043604(probes 133139:133210) chr11:49036565-49069250(probes 133148:133151) chr11:48997300-50003572(probes 133140:133208) 0.050944 0.11802 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 1 1 0 0 0 Deletion Peak 25 11q13.3 chr11:69589684-70049708(probes 134293:134337) chr11:69607478-69650714(probes 134295:134298) chr11:69588166-69978663(probes 134292:134330) 4.533e-39 3.7655e-26 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 1 0 1 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 1 1 Deletion Peak 26 11q13.4 chr11:70858270-71432906(probes 134406:134428) chr11:71146133-71248181(probes 134407:134416) chr11:71193930-71222606(probes 134412:134413) 5.7596e-08 5.8426e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 Deletion Peak 27 11q22.3 chr11:100837270-126300387(probes 136044:138385) chr11:107647795-107966297(probes 136588:136589) chr11:78780879-135006516(probes 135056:138931) 7.8663e-13 6.6939e-10 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 0 1 0 1 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 0 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 Deletion Peak 28 12p13.31 chr12:7857368-8224886(probes 139525:139539) chr12:7937856-8224886(probes 139534:139539) chr12:7653898-8836863(probes 139504:139574) 1.1734e-05 0.00057864 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 Deletion Peak 29 12p13.2 chr12:11144954-12232453(probes 139771:139815) chr12:11402139-11596606(probes 139777:139778) chr12:11144954-11949362(probes 139771:139804) 0.00020333 0.010977 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 Deletion Peak 30 12q24.11 chr12:111323829-111783681(probes 147501:147542) chr12:111333739-111376129(probes 147502:147505) chr12:109999659-123016541(probes 147368:148455) 9.0561e-05 0.048944 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 1 Deletion Peak 31 12q24.21 chr12:116280850-117002527(probes 147922:147962) chr12:116572493-116600973(probes 147945:147946) chr12:109999659-123016541(probes 147368:148455) 1.9469e-07 7.9926e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 1 0 0 1 0 1 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 1 Deletion Peak 32 13q12.11 chr13:1-21720943(probes 149148:149250) chr13:1-20131472(probes 149148:149170) chr13:1-21751225(probes 149148:149255) 0.0021068 0.04294 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 1 0 0 1 1 1 1 0 1 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 1 1 1 0 1 1 1 0 1 0 0 1 1 0 0 1 1 0 1 0 1 1 0 0 0 0 1 1 1 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 1 1 0 0 Deletion Peak 33 13q14.3 chr13:40343187-70682555(probes 150571:151979) chr13:52033406-52242054(probes 151339:151352) chr13:41134330-77526697(probes 150574:152523) 0.00015279 0.13182 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 1 0 1 0 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 1 1 1 1 1 1 0 0 1 0 1 0 Deletion Peak 34 13q21.32 chr13:31703605-110386848(probes 149980:155347) chr13:61956809-70281842(probes 151754:151945) chr13:41134330-77526697(probes 150574:152523) 0.00057864 0.15975 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 1 0 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 0 0 0 0 1 1 1 1 1 0 1 1 1 0 0 0 1 1 0 1 0 1 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 1 1 1 1 1 0 0 1 0 1 0 Deletion Peak 35 14q31.3 chr14:52734136-104559790(probes 157518:162214) chr14:73508063-103338279(probes 159429:162084) chr14:67849267-77361918(probes 158901:159799) 0.023754 0.023828 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 1 0 1 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 0 0 0 1 0 0 1 0 1 0 Deletion Peak 36 15q11.2 chr15:25342050-25543337(probes 162426:162439) chr15:25213133-25682042(probes 162411:162453) chr15:1-32964427(probes 162330:162691) 4.5518e-46 1.3215e-27 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 0 1 0 0 0 1 1 0 1 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 0 1 1 0 1 1 1 0 1 0 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 Deletion Peak 37 15q12 chr15:27044063-27233912(probes 162511:162523) chr15:27052800-27214000(probes 162512:162522) chr15:1-32964427(probes 162330:162691) 8.1146e-55 7.7715e-30 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 1 0 1 1 1 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 1 1 0 1 0 1 0 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 1 1 0 1 0 0 0 1 0 1 1 Deletion Peak 38 16p13.12 chr16:11749102-30366810(probes 169562:170618) chr16:14707349-18830542(probes 169849:169854) chr16:14736942-18820928(probes 169852:169853) 0.1621 0.21594 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 Deletion Peak 39 16q11.2 chr16:46806531-46992839(probes 170785:170803) chr16:46815800-46876660(probes 170786:170790) chr16:46649963-47639712(probes 170766:170855) 2.9267e-06 0.014153 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 1 0 1 1 1 0 0 1 0 1 0 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 1 0 Deletion Peak 40 16q22.1 chr16:67002965-67144110(probes 172014:172025) chr16:67040290-67063738(probes 172018:172019) chr16:50826563-90354753(probes 171095:173635) 5.3502e-23 6.4928e-22 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 0 1 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 0 1 1 0 0 0 1 1 0 1 0 1 1 1 1 1 0 0 Deletion Peak 41 17p13.1 chr17:10101617-11502159(probes 174443:174548) chr17:10186888-10302755(probes 174452:174458) chr17:1-16881001(probes 173636:174839) 2.6957e-09 2.6957e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 0 0 1 1 1 1 1 1 1 1 0 1 0 0 0 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 0 1 1 0 1 1 Deletion Peak 42 17q21.2 chr17:39140303-45286757(probes 176118:176562) chr17:39503139-39777017(probes 176142:176166) chr17:39193622-45295919(probes 176124:176563) 0.0017976 0.0018162 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 1 1 1 0 1 0 0 1 1 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 1 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 1 1 1 0 1 0 0 0 1 1 0 0 0 1 0 1 0 1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 0 Deletion Peak 43 18p11.31 chr18:2893532-5145656(probes 179073:179275) chr18:2960747-3438095(probes 179086:179119) chr18:2982718-3087094(probes 179087:179088) 0.19624 0.19648 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 1 1 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 1 1 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 0 0 1 1 1 1 1 1 1 0 1 0 Deletion Peak 44 18q21.33 chr18:59559987-59994420(probes 182975:183024) chr18:59824992-59984546(probes 183008:183023) chr18:59895686-59925305(probes 183016:183017) 0.015094 0.015349 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 0 0 1 1 0 1 0 1 0 1 0 1 1 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 1 0 1 1 0 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 1 1 1 1 0 0 1 0 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 1 1 0 0 1 0 0 1 1 1 1 1 1 0 1 1 0 1 0 Deletion Peak 45 19p13.3 chr19:1-3366920(probes 184050:184312) chr19:1-1881317(probes 184050:184175) chr19:1-4957618(probes 184050:184448) 0.00055785 0.19648 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 0 0 1 1 0 1 0 0 1 0 1 1 0 1 1 0 0 1 1 1 1 1 0 1 1 0 0 0 0 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 0 1 0 0 1 1 1 0 Deletion Peak 46 19p13.2 chr19:8940927-9214221(probes 184800:184822) chr19:8950216-9214221(probes 184801:184822) chr19:8987374-9067462(probes 184805:184818) 1.3832e-18 8.8797e-14 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 1 1 1 0 1 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 1 0 1 0 1 0 1 1 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 1 1 0 0 Deletion Peak 47 19p13.2 chr19:11836080-12126569(probes 185096:185107) chr19:11891779-12019592(probes 185097:185099) chr19:11908878-12029406(probes 185099:185100) 6.055e-07 0.019426 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 1 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 1 0 1 0 1 1 0 0 1 0 1 1 0 0 0 1 1 1 1 1 1 1 1 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 1 1 0 0 Deletion Peak 48 19p12 chr19:19788737-23494464(probes 185856:186010) chr19:19937181-21261723(probes 185863:185864) chr19:19805884-33687659(probes 185858:186376) 5.8793e-13 9.0561e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 1 1 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 0 1 0 0 1 0 1 1 1 1 1 1 0 0 1 0 0 0 0 1 1 0 0 Deletion Peak 49 19q13.11 chr19:33445752-33635793(probes 186351:186370) chr19:33553676-33635793(probes 186362:186370) chr19:19805884-33687659(probes 185858:186376) 1.9087e-69 2.9314e-53 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 1 0 1 0 0 1 1 1 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 1 1 1 Deletion Peak 50 19q13.2 chr19:40513357-40704370(probes 187057:187067) chr19:40522704-40704370(probes 187058:187067) chr19:40541399-40710461(probes 187060:187068) 0.0001329 0.08149 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 0 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 1 0 1 0 1 1 1 Deletion Peak 51 19q13.42 chr19:53885534-54385653(probes 188179:188182) chr19:54022038-54385653(probes 188181:188182) chr19:52659460-55677501(probes 188123:188284) 1.5188e-12 2.9854e-09 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 1 0 1 0 1 0 0 0 0 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 0 1 0 0 1 0 1 1 1 1 1 0 0 0 1 1 0 1 0 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 1 0 1 1 1 1 1 1 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 1 1 1 Deletion Peak 52 20p11.1 chr20:25834498-29900943(probes 190307:190334) chr20:25974471-29900943(probes 190320:190334) chr20:25984469-26114198(probes 190321:190322) 0.030003 0.029455 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 53 22q11.1 chr22:1-18264873(probes 195138:195212) chr22:1-17846828(probes 195138:195175) chr22:1-18075722(probes 195138:195192) 0.19624 0.19648 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 1 1 1 1 1 0 0 1 1 1 0 0 1 0 0 1 0 1 0 1 1 0 0 0 1 1 0 1 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 Amplification Peak 1 - CN values 1p35.2 chr1:32042906-32101921(probes 2507:2513) chr1:32050237-32092446(probes 2508:2512) chr1:32050237-32120870(probes 2508:2515) 0.056151 0.20111 Actual Copy Change Given 1.2875 0.15099 -0.085457 0.11844 -0.33676 -0.13081 -0.019314 -0.2589 -0.63396 -0.07881 -0.070804 0.28945 0.35545 0.046275 0.81864 0.45717 -0.13005 0.2176 -0.015191 -0.12351 -0.15067 0.030071 0.013911 -0.67683 -0.30181 -0.44167 -0.017941 0 2.084 2.3349 -0.12356 -0.69776 0.0038297 0.047694 -0.0055375 0.018103 0.17046 -0.038442 0.050534 -0.074822 0.22068 0.022304 0 0.4657 -0.17107 0.05908 -0.35396 -0.035034 -0.17457 -0.39675 -0.047936 0.064797 -0.28049 -0.67958 0.7683 -0.016567 0.080601 0.066229 0.022304 0.027919 -0.0096806 -0.11087 -0.16217 0.13007 -0.013815 -0.1609 -0.07214 -0.10834 0.12727 0.029325 0.044857 -0.065447 -0.057385 -0.010509 0.10526 -0.37887 -0.40672 -0.013518 -0.045228 0.026514 -0.32286 -0.30651 -0.027535 -0.28924 -0.33445 0.55711 0.084932 -0.50619 0.0055547 -0.034359 0.015308 2.7535 0.48802 -0.20498 -0.020687 0.12874 -0.0055375 0.012516 0.13022 0.19619 0.056228 -0.67591 -0.081472 0.24078 -0.0013858 0.14503 -0.021717 -0.28644 -0.069466 0 0.24389 -0.23214 -0.065447 -0.33791 -0.20622 -0.3112 0.45037 0.30137 0.047694 -0.043702 0.62989 0.65185 Amplification Peak 2 - CN values 1p34.2 chr1:40820677-46134498(probes 3207:3723) chr1:43779672-43830954(probes 3470:3475) chr1:41327523-45336225(probes 3255:3633) 0.012035 0.087521 Actual Copy Change Given 1.8291 0.15099 0.98349 0.11844 0.54206 -0.13081 0.51577 -0.15195 -0.63396 -0.07881 0.52625 0.8481 0.016705 1.4822 0.81864 0.83235 1.093 1.1102 0.027919 -0.12351 0.056228 0.030071 0.28628 -0.67683 -0.26973 -0.44167 0.012516 0 0.061937 0.034959 0.089272 -0.52777 0.0038297 0.0055529 -0.0055375 0.018103 0.19466 -0.038442 2.5567 -0.074822 0.16595 0.022304 0 0.4657 -0.17107 0.05908 -0.35396 -0.035034 0.2365 -0.024798 -0.047936 0.064797 -0.28049 -0.47691 0.45888 -0.016567 0.080601 0.066229 0.022304 0.027919 -0.0096806 0 -0.16217 0.13007 0.080601 0.096525 -0.07214 -0.10834 0.12727 0.029325 0.044857 -0.013815 0.5865 -0.010509 0.17046 -0.37775 -0.40672 -0.013518 -0.045228 0.026514 -0.195 -0.30651 -0.027535 -0.28924 0.14652 0.04275 -0.12875 0.84218 0.0055547 0.05908 0.015308 -0.027535 -0.15067 0.071966 -0.020687 -0.028901 -0.0055375 0.012516 -0.17866 0.19619 0.056228 -0.67591 -0.081472 0.24078 -0.0013858 0.14503 -0.021717 -0.16472 0.026514 0 0.24389 0.88386 -0.065447 0.12874 -0.20622 0.83039 0.050534 0.25245 0.38667 -0.043702 0.14652 0.30218 Amplification Peak 3 - CN values 1q23.2 chr1:153265039-175066685(probes 10224:12314) chr1:159277631-159783311(probes 10806:10856) chr1:120524472-249250621(probes 9931:18180) 2.6341e-11 1.2177e-06 Actual Copy Change Given 0.86592 0.73777 2.9007 0.32785 0.41459 0.000575 1.2221 0.54559 -0.031632 -0.07881 0.27048 1.0866 0.10089 1.2921 1.1231 0.45547 0.38998 2.3772 0.63171 0.17648 0.43682 0.14434 0.88386 0.75299 0.94241 0.28786 0.042024 0.02511 1.0483 0.60088 0.42167 0.73777 0.56287 0.56863 -0.0094218 0.38998 1.1602 0.10964 0.98349 0.77405 0.54912 0.16445 0 0.65305 1.0398 1.042 0.66106 0.96803 0.17685 0.31338 0.84218 0.058556 0.62079 -0.016567 1.3265 0.66845 0.083487 0.45717 -0.056038 0.012516 0.48802 0.009343 0.51228 0.36526 1.191 0.9019 0.071966 0.61172 0.036089 0.53678 -0.0027707 0.85205 0.026514 0.87468 0.0013868 0.74157 0.77599 0.036489 0.59548 0.26263 0.1105 0.94241 -0.065447 0.56977 0.18707 0.031454 0.25012 1.0189 0.54207 -0.0027707 0.82843 0.67957 0.65369 1.7711 1.2199 0.26263 -0.0055375 0.36362 1.0631 0.14801 0.62989 0.65553 0.79142 0.24078 -0.06142 0.077718 0.63003 0.39662 0.65001 0 1.5751 0.53327 1.4248 0.57219 0.23612 0.14503 0.40494 0.87486 0.03214 0.5957 3.6569 0.27837 Amplification Peak 4 - CN values 1q42.13 chr1:154154497-237547920(probes 10311:17581) chr1:226825417-227387305(probes 16660:16714) chr1:120524472-249250621(probes 9931:18180) 9.1629e-09 0.002389 Actual Copy Change Given 1.1231 0.73777 0.3473 0.27363 0.41459 0.42068 0.20534 -0.46419 -0.27093 0.17648 0.14355 0 0.026514 0.38502 0.78562 0.33755 0.38998 0.28945 0.32785 0.30058 0.34242 0.18939 3.2198 0.75299 0.94241 0.2958 0.042024 0.02511 1.0483 0.044857 0.53151 0.73777 0.45336 0.051956 0.12285 0.38998 1.1318 -0.25285 0.81084 1.1166 0.54912 0.16445 0 0.76638 0.52275 2.2164 1.0209 0.76042 0.19047 0.24078 0.64268 1.0377 0.28469 0 1.1253 0.66845 0.083487 0.71509 0.0083351 0.012516 0.13909 0.2732 0.59908 0.24856 0.6629 0.94854 0.013911 0.7283 0.069095 0.33593 0.32785 0.82702 0.026514 0.49389 0 0.87388 0.67215 0.098293 0.81669 0.26263 0.15547 0.33918 -0.0013858 1.7364 0.18707 0.00071057 0.083487 1.0189 0.38667 0.37841 0.65553 0.7283 0.75299 1.8344 1.1624 0.40327 0.023706 0.36362 1.0631 0.57219 0.58291 0.65553 0.43851 0.24078 0.011121 0.077718 0.75538 0.071966 0.016705 0 2.0587 0.11111 1.4822 0.37183 0.16295 0.14503 0.40494 0.79431 1.0042 0.70218 0.55266 -0.15067 Amplification Peak 5 - CN values 2q11.1 chr2:95471289-99976661(probes 24936:25253) chr2:96688702-96781215(probes 25023:25024) chr2:95847333-98460409(probes 24980:25131) 0.027642 0.027642 Actual Copy Change Given 0.53327 -0.33214 0.41329 0.15696 -0.34366 0.18164 1.0801 0.61897 -0.12095 -0.049289 -0.15324 0.31659 -0.05469 0.31177 0.09217 0.015308 0.91602 0.53151 0.42335 0.080601 0 0.003511 0.79723 0.98349 -0.30298 -0.015191 0.15846 0.16595 -0.0083005 0.10526 0.050534 -0.10187 0.29861 0.73019 -0.37662 0.25949 0.26577 0.029325 0.31819 -0.10658 -0.27093 0.044857 -0.030267 -0.25164 1.158 0.37891 0.040609 -0.018622 0.015643 0.0055529 0.076279 -0.1698 0.15547 0.25636 0.011121 0 -0.23092 0.13465 0.13317 -0.0013858 0.37347 0.41785 0.012516 0.042024 0.17196 0.36035 -0.037082 0.16745 0.015308 0.28945 0.027919 -0.15452 0.71509 0.0019406 0.22839 -0.07214 -0.056038 -0.019018 0.16145 0.13465 -0.19124 0.19923 0.018103 -0.049775 -0.045228 0.088566 0.39662 0.096525 -0.030265 0.047694 0.011121 0 -0.22969 -0.37999 0.0097276 -0.0069195 0.039195 0.22839 -0.070804 0.19162 0.097979 -0.2781 0.24544 0 0.20076 -0.23092 0.017053 0.067661 0.0041632 -0.0083005 2.1239 -0.11704 0.63171 0.064797 0.20381 0 0.1155 0.031426 -0.058731 -0.047766 0.080601 -0.11312 Amplification Peak 6 - CN values 3q26.32 chr3:178552266-178969743(probes 49529:49552) chr3:178561070-178935793(probes 49530:49547) chr3:176689752-179133293(probes 49527:49564) 0.0024062 0.0024062 Actual Copy Change Given -0.015191 -0.047936 0.37019 -0.01508 1.0887 0.58724 0.86195 -0.049289 0.030732 0.12727 0.16895 0.20076 0.21453 0.63353 0.082043 0.46058 -0.038442 0.96288 0.37677 0.04344 0.1901 0.025854 1.0314 0.0041632 -0.28168 -0.0069195 -0.022058 0.049114 0.046275 0.065134 -0.089434 0.1038 0.045934 0.030732 0.029325 -0.18244 0.39662 0.75872 1.3566 -1.1294e-05 0 -0.030267 0.096525 0.11844 0.26106 0.07053 0.6629 0.01043 0.03107 0.022304 1.3473 -0.14168 -0.0055375 0.25168 0.053379 0.014644 0.093621 0.087824 0.073402 0.047694 0.05908 0.074443 0.1155 -0.11574 0.31177 0.34404 0.080601 -0.26492 3.6569 0.33432 0.069095 1.0293 0.096525 0.03976 -0.21243 0.36526 0.18253 0.039501 0.018103 -0.026167 0.20076 0 0.019503 0.10912 0.56863 0.13541 0.33108 -0.33329 0.40494 0.097979 0.056228 0.066229 0.37841 0.87787 -0.032996 0.019503 -0.0083005 0 0.16745 0.27837 0.034959 0.060508 0.20228 0.4402 0.099433 0.077718 0.015655 0.07484 0.020903 0.029325 2.6268 -0.21861 0.48113 0.90996 0.096525 0.38502 0.45207 0.30297 0.13613 0.37862 0.81864 0.30697 Amplification Peak 7 - CN values 6p22.1 chr6:1-64420472(probes 78754:83371) chr6:30113820-30228356(probes 81187:81193) chr6:29759909-30240406(probes 81179:81196) 0.21301 0.21301 Actual Copy Change Given 0.18707 0.2958 1.4629 0.12874 0.36526 -0.0077279 0.84415 0.12579 0.002338 0 0.22684 0.13761 -0.042517 0.62624 0.053379 -0.068127 0.27995 0.3198 0.18253 -0.0096806 0.0097276 -0.047219 1.1954 -0.012438 0.0083351 0.0027745 -0.070804 -0.023429 0.040609 -0.050641 -0.085457 -0.016567 -0.0058694 0.674 0.19771 0.11111 -0.19124 0.0013868 -0.037082 -0.10133 -0.37324 0.0013868 0.064797 0.28786 0.45547 -0.060076 0.044857 0.32061 -0.046258 0.019503 0.55089 -0.010885 0.0069435 0.12874 0.59908 -0.026167 0.012516 0.083487 0.067661 -0.020687 -0.064106 0.045883 0.40161 0.53151 0.36526 0.12285 0.064797 0.2176 0.015308 0.018103 -0.28406 0.26577 0.10235 0.017263 -0.14168 0.31819 0.0027745 0.025413 0.034959 0 0.013911 -0.55507 0.02511 0.50297 -0.099999 -0.047243 -0.058731 1.4919 0.49493 0.04344 0.012516 -0.50308 0.19162 -0.12095 -0.030267 0.04344 -0.016567 -0.089434 0.14206 0.082043 -0.026167 -0.041159 0.060508 0.60629 -0.074811 -0.2781 -0.0010412 0 0.086377 -0.032996 0.71509 0.37019 0.60088 0.84218 0.26577 0.097979 -0.019314 0.091434 0.1901 -0.0095064 0.51926 0.67957 Amplification Peak 8 - CN values 7q36.1 chr7:149475189-149529933(probes 101991:101999) chr7:149477495-149524966(probes 101992:101997) chr7:148984762-150031138(probes 101945:102003) 0.0018785 0.0018785 Actual Copy Change Given 0.35055 0.15248 0.49493 -0.0096806 -0.27212 0.11464 -0.43409 0.55266 0.018103 0.27363 0.247 -0.20747 0.89989 1.5826 0.084932 0.10526 0.46741 1.8637 -0.14039 0.90392 -0.17866 0.037119 0.52801 0.84415 0.042024 0.022304 0.060508 -0.36079 0.022304 0.15995 0.29421 0.1155 0.055885 0.18253 0.15696 0.7549 2.2841 -0.34366 -0.35282 0.48456 0.15846 0.1155 0.19923 0.076279 0.42839 1.3219 0.28469 0.066951 0.099783 0.47426 0.10089 0.16895 0.04344 -0.030267 0.066229 0.1495 0.14801 0.65185 0.17046 0.09072 0.07484 0.12097 -0.058731 0.034959 0.07484 -0.049289 0.14801 0.14652 0.19314 0.2958 0.15846 1.9041 1.1253 0.076853 0.096525 -0.195 0.099433 0.11875 0.096525 0.10964 0.45377 0.74918 -0.028901 0.2328 0.33918 -0.12549 0.046275 0.42335 0.050536 0.31017 0.056228 0.26577 0.50012 -0.33214 0.72263 0.23767 0.047694 0.039195 0.23457 0.016705 0.13613 0.1038 0.23457 -0.40008 0.097979 0.1795 0.19504 0.079159 0.18859 0.084932 0.45547 0.22684 -0.027535 0.53678 0.24856 0.21453 -0.015191 0.29818 -0.027535 0.65025 -0.36759 1.3636 Amplification Peak 9 - CN values 8p11.23 chr8:37422222-37917437(probes 104809:104834) chr8:37672451-37732436(probes 104820:104826) chr8:35453125-42403493(probes 104768:105146) 2.6381e-08 2.6381e-08 Actual Copy Change Given 1.7869 0.45547 -0.25406 0.18102 -0.78159 -0.19197 -0.10132 3.6569 2.0083 0.78176 -0.46419 -0.3356 0.67215 0.58471 -0.031632 0.022304 0.51926 1.8584 -0.37437 3.2416 -0.39341 0.061266 -0.085457 0.034959 -0.30181 3.6569 0.23612 -0.48323 0.012516 0.4657 -0.06142 0.21914 0.010786 -0.73687 0.05908 -0.31821 -0.43626 -0.14554 1.0293 0.76253 0.74157 -0.13781 -0.63206 -0.22601 0.63902 0.022304 0.10964 0.31098 -0.23308 1.6477 0.033549 0.049058 -0.36533 3.6569 1.2445 0.15248 3.6569 0.033549 -0.29355 0.019503 -0.13393 -0.37581 -0.067737 0.44528 -0.19875 0.97935 -0.0013858 -0.58775 0.13761 -0.47797 0.012516 0.674 -0.22231 -0.017392 -0.20374 -0.38895 3.5597 0.19956 0.027919 0.029325 0.53327 1.3683 0.030732 -0.03893 0.080601 0.41247 -0.11051 -0.41003 0.012517 -0.1774 -0.06142 -0.14811 0.27679 0.12579 0.26106 0.025476 1.3035 0.0097276 -0.77821 1.2221 0.037782 0.03214 0.07053 0.073402 -0.08413 -0.79586 -0.043536 0.033549 -0.045228 0.080601 -0.31937 -0.3856 0.37841 0.07053 -0.33906 1.9641 -0.05469 -0.0020886 0.12579 0.32967 0.68701 0.24856 Amplification Peak 10 - CN values 8q24.21 chr8:126448482-130771681(probes 110816:110856) chr8:127569169-128968800(probes 110817:110849) chr8:72383130-146364022(probes 106966:111958) 5.1296e-14 5.1296e-14 Actual Copy Change Given 1.2355 0.45547 2.9075 0.18102 1.2784 0.61247 1.8238 1.2221 2.3985 0.16295 1.4176 3.6569 0.67215 0.68328 0.073402 0.43851 0.61534 1.6757 0.83628 0.21146 1.1405 0.061266 1.9504 0.034959 -0.30181 3.6569 0.23612 -0.0013858 0.012516 0.63719 -0.06142 0.21914 0.010786 1.4678 0.05908 0.77791 1.2989 0.15099 0.70757 0.76253 1.4248 0.32947 0.12874 -0.22601 3.6569 0.022304 0.15846 0.50273 0.63215 0.78176 0.77984 0.40327 2.1785 -0.12356 1.2445 0.15248 1.8132 0.26577 0.63353 0.019503 0.022304 0.85546 -0.026167 1.0801 0.30378 3.0806 0.080601 0.47084 0.30218 0.20381 0 0.93427 0.064797 0.098559 0.15995 1.6503 3.3295 0.25358 0.41919 0.029325 0.68701 1.4991 0.030732 -0.035466 0.93427 0.16929 0.25012 0 0.012517 1.0293 0.11991 0.60268 1.1667 0.93834 1.078 0.012516 1.387 0.0097276 -0.056038 0.19314 0.037782 -0.69685 1.0189 0.49666 0.09072 1.1188 0.12991 0.22068 -0.056038 1.8879 3.6569 0.11697 2.4661 0.91198 0.10235 1.121 0.076279 -0.0020886 0.12579 0.40515 0.5633 0.30378 Amplification Peak 11 - CN values 9p24.3 chr9:1-35194(probes 111959:111964) chr9:1-34837(probes 111959:111963) chr9:1-793959(probes 111959:111966) 0.0087466 0.0087466 Actual Copy Change Given -0.057385 0.11697 -0.035721 -0.28168 -0.25406 -0.15526 0.11844 0.54735 -0.041159 -0.13781 0.080601 0.020903 -0.16599 0.74918 1.0377 0 2.3863 -0.15195 -0.26372 0.018103 -0.099999 0.013256 0.50707 0.011121 -0.31003 -0.034359 -0.043873 -0.4232 -0.01106 -0.0083005 -0.53896 0.044857 -0.0017184 0.27995 0 0.32947 0.13022 -0.13523 -0.67131 0.13464 -0.35683 -0.074811 -0.39007 -0.28049 1.8557 0.013911 -0.23092 -0.00068689 -0.050316 -0.015191 0.31692 -0.046583 0.38171 0.18253 0.012516 0.029325 0.061398 0.35708 -0.34021 -0.024798 -0.047936 0.091769 -0.14039 0.11844 0.79336 0.17196 0.033549 -0.23214 -0.089434 0.20687 0.066229 0.26577 0.16295 -0.020139 -0.28762 1.0844 1.2625 -0.017644 -0.012438 0.053379 -0.060076 0.019503 -0.027535 0.69193 1.1932 -0.19561 -0.092081 -0.28406 0.064799 -0.17234 0.080601 0.0013868 3.6569 -0.36759 -0.023429 -0.0096806 0.039195 0 0.12727 -0.19375 0.042024 0.011121 -0.35624 -0.35282 -0.097363 0.049114 0.096886 -0.14554 -0.0083005 -0.0055375 -0.2407 -0.55307 1.093 -0.34481 -0.098682 -0.085457 0 -0.03505 0.051956 -0.013641 0.071966 -0.20995 Amplification Peak 12 - CN values 10p15.1 chr10:2687843-13221943(probes 120663:121171) chr10:4872952-5037535(probes 120733:120749) chr10:1-14573851(probes 120515:121254) 2.2074e-05 2.2074e-05 Actual Copy Change Given 0.55797 0.17498 0.52625 0.044857 0.013911 0.1264 0.84415 0.2974 -0.0041546 0.17799 0.35218 0.69447 0.027919 0.50186 -0.1698 -0.45244 0.61897 0.46913 0.0013868 -0.0096806 -0.0083005 -0.025441 1.6859 -0.076145 0.046275 -0.024798 -0.038442 -0.07881 -0.058731 0.029325 -0.068127 -0.3217 -0.033323 0.81474 0.061937 0.2642 1.7816 0.13909 0.099433 1.9723 0.20687 0.047694 -0.089434 0.05908 0.5633 -0.13781 0.4932 -0.19312 -0.11019 0.040609 0.73777 1.4319 -0.023429 -0.33906 0.16295 -0.11574 -0.073476 -0.093403 -0.10132 -0.031632 -0.090758 -0.38479 0.026514 0.52101 0.22068 -0.248 0.042024 0.2958 0.029325 -0.28287 -0.16345 1.0022 -0.042517 -0.15656 0.46741 0.084932 0.18859 -0.023133 -0.065447 -0.094724 -0.094724 2.5034 0.0027745 0.3128 0.15248 0.48202 0.064797 -0.013815 -0.17107 -0.11051 -0.15195 0.56863 0.53503 -0.4695 0.14801 0.13761 -0.1975 -0.12875 0.24856 0.28311 -0.13393 -0.088109 0.057653 -0.046583 -0.092081 0.047694 -0.059742 3.6569 -0.14939 -0.11574 1.8132 1.8106 0.33593 -0.24314 -0.29236 0.011121 -0.47056 -0.10067 0.13465 -0.020514 1.0105 0.030732 Amplification Peak 13 - CN values 11p13 chr11:34064144-36669635(probes 132357:132565) chr11:35684995-36322773(probes 132485:132538) chr11:31131859-42220099(probes 132092:132570) 0.00016723 0.00018287 Actual Copy Change Given -0.25164 0.016056 -0.10263 0.020903 0.097979 0.10733 0.54383 -0.41443 0.0083351 0.11697 0.63536 -0.012438 -0.058731 -0.1092 0.042024 0.45717 0.40494 2.463 0.18707 -0.074045 -0.034835 0.020245 0.46913 0.12043 0.070357 0.32141 0.038385 0.48802 0.030732 0.097979 0.09217 -0.004821 0.42294 -0.017941 0.059641 0.92006 0.27837 0.046275 0.13613 0.3704 0.019503 0.064326 0.0065224 1.8132 2.2752 0.12285 0.20228 0.032851 0.089619 0.096525 0.88986 0.10342 0.095072 0.14652 0.026514 0.097979 0.089272 0.04344 0.03637 0.07484 0.040609 -0.025176 0.061937 0.76255 0.17347 -0.05469 0.1495 1.7192 0.084932 -0.31704 -0.17613 -0.40672 -0.0027707 0.040794 0.063366 0.37677 0.4777 0.035264 0.057653 0.066229 -0.45136 0.1038 -0.015191 -0.047814 1.093 0.034272 -0.098682 0.48113 0.067663 0.056228 0.12579 0.03637 -0.13523 2.2164 0.044857 -0.014029 0.029325 0.09072 0.19162 0.2642 0.14206 0.11111 0.86394 -0.0027707 0.060508 0.12138 -0.033097 -0.19875 0.060508 0.097979 -0.21186 -0.17866 0.76255 -0.10526 0.073402 0.17799 0.042458 -0.26673 1.3404 0.032318 0.13465 0.50012 Amplification Peak 14 - CN values 11q13.3 chr11:69914979-70275188(probes 134327:134363) chr11:70026137-70049708(probes 134337:134337) chr11:66555688-83574140(probes 134065:135143) 9.3191e-18 9.5491e-18 Actual Copy Change Given 0.042024 -0.064106 -0.1092 -0.012438 0.55974 0.097128 1.4058 0.089272 0.71886 0.086377 0.018103 2 -0.065447 0.74727 1.5776 0.084932 -0.0096806 1.0951 -0.15835 -0.074045 0.051956 0.079923 -0.037082 3.6569 3.6569 3.0947 0.038385 0.33755 0.030732 0.047694 0.09217 -0.0013858 3.6569 0.037782 0.059641 0.33918 0.31498 0.030732 3.6569 0.2689 -0.030267 0.064326 0.012516 3.6569 1.9945 0.13465 0.22222 0.032851 0.089619 -0.37662 0.0013868 1.1037 0.095072 -0.22108 0.76255 0.039195 3.6569 0.095072 -0.01106 0.07484 0.35218 -0.025176 0.061937 3.0841 0.046275 -0.090758 -0.72544 0.22068 -0.08413 0.029325 -0.21614 0.02511 -0.19375 0.040794 0.063366 0.95878 2.952 0.010029 0.057653 0.066229 0.16445 0.037782 0.0055529 -0.037571 0.033549 0.091463 0.29421 0.66475 0.067663 0.056228 0.050534 0.03637 -0.15324 3.6569 0.044857 -0.014029 0.029325 0.097979 0.11991 0.24856 0.023706 0.054803 1.1866 0.064797 0.056228 0.12138 0.026863 -0.047936 0.060508 0.069095 1.8691 -0.13264 -0.046583 0.12579 0.034959 -0.05469 0.042458 -0.26673 0.11991 -0.012055 -0.41113 0.35545 Amplification Peak 15 - CN values 12p13.33 chr12:1-92091(probes 138932:138937) chr12:1-90952(probes 138932:138936) chr12:1-7505087(probes 138932:139489) 1.1773e-13 4.1601e-13 Actual Copy Change Given 0.18707 0.36199 0.84415 -0.057385 -0.4034 0.086977 0.52801 2.2369 -0.086784 0.037782 0.23303 -0.15452 0 -0.15921 0.12727 0.023706 0.53327 0.47255 -0.36193 -0.013815 0.04635 -0.026809 2.6686 1.9395 -0.093403 0.029325 -0.069875 0.0027745 -0.093403 -0.026167 0.057653 1.3613 0.045934 2.8206 -0.035721 0.58829 1.7218 3.6569 1.0844 -0.072151 0.26106 0.0069435 -0.5897 -0.057385 0.64634 0.015308 0.53678 0.0020867 0.019839 0.018103 1.9834 -0.0053677 0.040609 0.22993 2.302 -0.019314 0.067661 0.15397 0.52625 0.020903 1.3543 -0.24348 -0.032401 0.78369 0.31498 0.58112 -0.027314 0.96905 1.5382 -0.15452 0.07053 -1.1161 -0.015191 0.081176 0.013911 1.521 -0.40451 1.1042 -0.12486 0.019503 -0.67958 1.2989 -0.0027707 0.15344 1.5186 0 0.11844 1.7012 0.012517 0.11697 0.018103 0.027919 3.2198 0.071966 0.063366 1.4798 0.023706 0.022304 -0.88928 0.10818 0.013911 0.59548 0.3408 0.15696 -0.032394 0.011121 0.039547 0.0083351 0.018103 0.0027745 0.023706 0.86791 0.083487 0.14801 -0.049289 0.050534 -0.017941 -0.25105 0.1155 1.0422 0.38833 -0.13523 Amplification Peak 16 - CN values 12p11.21 chr12:29911327-32744825(probes 141178:141314) chr12:31862388-32136390(probes 141263:141263) chr12:29920920-39348983(probes 141179:141348) 0.0028393 0.0090891 Actual Copy Change Given 0.016705 1.1821 0.75872 0 0.044857 0.066823 0.061937 0.41162 0.0097276 0.046275 0.22068 0.26577 -0.1698 3.6569 0.18102 0.058631 0.016705 0.98763 2.7109 0.02511 0.07053 0.011861 1.7633 0.0048336 0.030732 0.029325 0.0013868 0.04764 0.026514 0.0089162 0.099433 -0.20747 0.26225 -0.032996 0.22839 0.26263 -0.015191 0.012516 0.5562 -0.037093 0.26891 0.038504 -0.10132 0.079159 -0.0013858 0.015308 0.051956 0.045572 0.019839 0.018103 0.029325 0.022304 0.040609 0.22993 0.0041632 -0.017941 0.019503 0.093621 0.033549 0.020903 -0.52675 -0.28558 3.6569 -0.012438 0.31498 0.58112 0.016129 -0.33791 0 -0.40451 0.022978 0.45037 -0.17234 0.049681 -0.019314 1.7555 -0.61297 0.011422 0.37019 0.019503 -0.19249 -0.80418 -0.0027707 0.20021 0.16445 -0.014486 0.0027745 -0.093403 0.012517 0.11697 0.018103 0.061937 -0.41992 0.057653 0.027919 -0.01106 0.023706 0.054803 -0.12356 0.013911 0.013911 0.029325 0.2176 0.077718 -0.032394 0.011121 0.039547 0.0083351 0.049114 0.039195 0.023706 1.727 -0.020687 0.13022 0.03214 0.15099 0.03214 0.068368 0.12727 0.011297 1.0546 -0.13523 Amplification Peak 17 - CN values 13q34 chr13:111362010-115169878(probes 155413:155623) chr13:113883798-114844944(probes 155565:155608) chr13:103411262-115169878(probes 154751:155623) 0.00073724 0.00073724 Actual Copy Change Given -0.076145 0.64268 1.5578 0.19771 0.34242 0.020083 1.345 -0.043873 -0.6368 -0.20995 0.11257 0.11111 0.034959 0.64818 -0.77481 0.94037 -0.14168 -0.1698 0.30697 -0.11312 0.17347 -0.010328 2.3319 -0.016567 -0.66763 0.0013868 -0.026167 0.015308 -0.0096806 -0.0096806 0.11991 0.034959 0.0038297 0.97729 -0.030267 1.0209 0.43851 0.33432 -0.49892 -0.46951 -0.37211 -0.013815 0.030732 -0.34136 -0.28287 -0.045228 0.15099 0.78274 -0.23308 0.11697 0.12727 -0.38895 0.026514 1.9258 -0.74212 -0.013815 0.053379 -0.42865 -0.19875 -0.032996 0.0055529 0.052986 0.057653 0.54383 3.6569 -0.58775 -0.66855 -0.22355 -0.093403 -0.27988 -0.27452 1.093 -0.0069195 0.0061078 0.32141 -0.29355 0.3327 0.066538 -0.40893 0.012516 -0.48953 -0.35852 0.04344 -0.11882 -0.20995 -0.19489 -0.20249 0.32141 -0.074809 -0.33791 -0.020687 -0.48953 -0.038442 0.40161 -0.0055375 0.020903 -0.050641 -0.019314 -0.43843 -0.049289 -0.023429 0.023706 -0.37775 -0.093403 -0.015191 -0.0055375 0.038134 -0.21614 0.020903 -0.032996 -0.23826 0.53503 -0.096044 -0.23582 -0.16853 -0.29 -0.037082 -0.017264 -0.070804 0.042203 -0.44167 0.24233 Amplification Peak 18 - CN values 14q11.2 chr14:1-27065790(probes 155624:156100) chr14:21449220-21488188(probes 155696:155698) chr14:1-29237220(probes 155624:156101) 0.011108 0.015772 Actual Copy Change Given 0.46229 0.16295 0.71697 -0.080141 0.13761 -0.1591 0.37019 -0.19124 0.21914 0.17347 0.2974 0.15547 0.35381 0.21453 -0.027535 -0.26252 0.02511 2.2193 -0.13264 -0.11574 0.3408 0.032888 1.7921 0.16445 0.060508 0.15696 0.11991 0.17347 0.022304 0.063366 0.38171 0.086377 0.068751 -0.74647 0.033549 -0.022058 0.51054 0.31819 -0.62064 0.48973 -0.3642 -0.0013858 0.046275 0.15547 0.57219 0.027919 0.25168 -0.0020722 0.015643 0.015308 -0.045228 -0.15195 0.14503 -0.15067 0.22376 0.22222 0.26263 0.28469 0.17648 0.026514 0.33108 -0.01832 0.10235 -0.17487 -0.21738 -0.26011 -0.038442 -0.089434 0.0013868 0.27995 0.063366 1.2087 -0.18999 0.2321 0.28945 0.23923 -0.26252 -0.0052389 0 0.17196 0.095072 0.56507 0 0.18198 0.18404 -0.072792 0.093621 -0.14811 0.39164 -0.10395 0.037782 -0.44599 -0.058731 -0.33214 0.069095 -0.077478 0.14355 0.14801 0.12579 -0.056038 0.013911 0.13465 0.61534 -0.24922 0.095072 -0.20747 0.10855 0.27837 -0.012438 0.05908 -0.248 -0.031632 0.38171 -0.30534 -0.0041546 1.1383 0.17046 0.097241 0.051956 0.14076 -0.28644 0.42839 Amplification Peak 19 - CN values 14q32.31 chr14:101505145-101533099(probes 161973:161980) chr14:101518824-101530873(probes 161976:161979) chr14:101514278-102023794(probes 161974:161982) 0.088008 0.13469 Actual Copy Change Given -0.089434 -0.099999 -0.12875 -0.026167 0.061937 -0.02286 -0.05469 -0.48008 0.0041632 0.0013868 -0.35168 0.0027745 -0.29473 0.5088 -0.069466 -0.39007 0.071966 -0.16472 1.2671 -0.11574 0.27206 0.032888 -0.039801 0.039195 0.060508 0.0069435 0.11991 -0.41773 0.022304 0 0.31679 0.086377 0.048773 -0.67683 -0.0055375 -0.26853 0.18102 0.079159 -0.61489 0.10525 -0.3642 0.11111 2.6978 -0.015191 0.18253 0.027919 0.027919 -0.0020722 0.015643 -0.26252 -0.59361 -0.21119 -0.15579 -0.195 -0.022058 0.012516 0.0097276 -0.44383 0.0027745 0.026514 0.020903 -0.046957 0.020903 -0.3755 0.86592 0.73587 -0.0055375 0.13761 0 -0.017941 -0.0027707 1.1145 -0.11835 -0.047396 0.21606 0.37183 -0.081472 0.031036 0 -0.027535 0.095072 0.56507 0 -0.29397 -0.080141 -0.14745 -0.17866 -0.31587 -0.017939 2.5253 2.7371 0.46741 0.49666 -0.35168 -0.01106 -0.01106 -0.062764 -0.027535 0.12579 -0.056038 0.013911 0.022304 0.20076 -0.24922 -0.13393 -0.20747 -0.031293 0.21453 -0.076418 -0.0041546 -0.248 0.11991 0.016705 0.033549 -0.0041546 -0.11443 0.033549 -0.045916 -0.25648 -0.028729 -0.3923 0.2084 Amplification Peak 20 - CN values 15q26.3 chr15:88999049-102531392(probes 167757:168760) chr15:102506353-102531392(probes 168754:168760) chr15:102506353-102531392(probes 168754:168760) 0.071981 0.071981 Actual Copy Change Given -0.27691 -0.090758 0.62079 -0.24409 -0.36306 0.27902 -0.82599 0.039195 -0.017941 3.6569 0.011121 -0.082801 -0.15707 0.72074 -0.0055375 -0.026167 -0.11051 -0.11182 0.10089 0.044857 -0.20622 0.054134 1.4438 -0.0027707 0.018103 -0.0013858 0.29262 0.49493 0.011121 0.069095 -0.015191 -0.62159 -0.0072511 -0.57002 0.042024 0.25636 0.79023 0 -0.57299 0.13908 -0.039801 0.0083351 0.013911 0 -0.096044 0.061937 -0.11443 0.054097 -0.063784 -0.081472 0.067661 0.0027745 0.38171 -0.16726 0.054803 -1.1319 -0.46844 -0.36759 -0.10788 0.011121 0.039195 -1.0112 0.10089 0.095072 -0.90874 -0.10132 0.039195 -0.16472 0.079159 -0.32982 0.033549 -0.40008 0 0 -1.009 0.464 -0.4034 -0.0038557 0.03637 -0.015191 0.013911 0.17799 -0.034359 0.01062 0.24856 0.10893 -0.086784 0.0041632 0.0097294 -0.081472 -0.041159 0.52976 -0.10395 -0.3551 -0.0096806 0 -0.053341 -0.43518 -0.43843 -0.08413 0.054803 -0.0069195 0.067078 -1.1956 -0.05469 0.019503 0.0058987 0.012516 3.1018 -0.019314 -0.26733 -0.18244 -0.11965 -0.40008 0.044857 0.11404 0.0097276 -0.051326 -0.05469 0.30877 -0.41992 -0.21625 Amplification Peak 21 - CN values 16p13.3 chr16:1-2831549(probes 168761:168944) chr16:766592-904169(probes 168773:168776) chr16:1-2851436(probes 168761:168946) 0.015772 0.015772 Actual Copy Change Given 0.037782 0.29262 -0.13005 -0.034359 0.46741 -0.13727 1.1102 0.13761 -0.0041546 0.18859 0.13909 0.086377 0.64451 0.66845 -0.17613 -0.016567 0.52101 0.24078 -0.089434 0.34404 1.338 0.18031 0.2253 0.093621 0.71886 0.097979 0.076279 0.018103 1.042 0.33108 0.48113 0 -0.069787 0.034959 -0.022058 0.13317 0.05908 0.2642 1.249 0.39328 0.914 0.0069435 1.3823 0.31017 0.27995 -0.019314 0.34222 -0.099335 0.021239 -0.01682 -0.15324 0.14206 -0.013815 -0.053358 -0.0083005 0.48458 -0.06142 0.22684 -0.024798 -0.015191 0.36854 0.32579 0.13909 -0.41553 0.16745 1.4943 -0.01106 -0.47374 0.16295 0.6226 -0.015191 -0.81819 0.056228 -0.12564 0.25168 0.42167 0.21146 0.63393 0.29262 -0.10526 0.25949 2.519 0.11111 1.0223 -0.0013858 0.16222 0.083487 0.089272 1.0147 0.24389 0.19314 -0.056038 -0.0042174 0.96493 0.32947 0.089272 0.81864 -0.041159 0.14206 0.2084 -0.065447 0.065063 0.53151 0.037782 -0.069466 0.59548 0.36567 0.35055 -0.12226 -0.056187 0.053379 -0.26131 -0.068127 0.12432 0.019503 0.43513 0.41329 0.16669 0.086377 0.41852 0.14355 0.18102 Amplification Peak 22 - CN values 17q12 chr17:37677184-38032998(probes 175979:176013) chr17:37842225-37903076(probes 175997:176002) chr17:35993384-39334965(probes 175838:176128) 1.9403e-22 3.2091e-18 Actual Copy Change Given -0.08413 -0.056038 -0.12746 -0.18496 -0.42101 3.6569 -0.08413 -0.37999 0.56863 0.12874 -0.30416 -0.32751 0.2958 -0.10132 -0.13393 0.01944 -0.18999 -0.1391 -0.14682 0.11991 0.41999 0 0.60449 -0.024798 -0.043873 0.76063 -0.035721 0.0055529 -0.023429 -0.501 -0.16217 -0.012438 3.6569 0.084932 -0.48008 0.50012 0.60991 -0.52981 -0.71657 3.4226 0.18102 3.4984 -0.12875 0.82843 3.6569 3.6569 0.50012 -0.1577 3.6569 0.59728 -0.22108 3.6569 3.6569 0.037782 -0.047936 -0.06142 -0.042517 -0.47374 -0.23704 -0.29236 1.2852 0.040219 0.10818 -0.10263 -0.30886 0.95263 -0.12226 3.6569 3.5712 0.53854 -0.29945 0.29262 3.6569 -0.12185 -0.32982 -0.11835 0.24233 -0.099715 -0.099999 -0.042517 -0.50515 0.31017 -0.024798 0.16391 0.57041 -0.22661 -0.22601 3.6569 -0.10394 -0.25406 -0.10526 -0.12486 0.0013868 -0.031632 -0.08413 -0.090758 0.0097276 -0.36079 -0.60815 0.0069435 -0.0041546 -0.034295 -0.44814 -0.023429 1.7503 -0.015191 -0.14136 -0.2589 -0.11383 0.0013868 0.20993 0.12727 -0.086784 -0.42757 -0.26612 2.4107 -0.013815 0.20609 3.6569 -0.089267 -0.43518 0.22222 Amplification Peak 23 - CN values 17q24.2 chr17:64299057-67510890(probes 177926:178142) chr17:65040151-65074534(probes 177963:177963) chr17:54939596-70643761(probes 177082:178155) 3.1992e-07 0.0035335 Actual Copy Change Given 0.28469 0.012516 -0.1736 -0.0096806 -0.32982 0.58545 0.3473 0.80305 1.1253 0.1155 -0.30416 -0.023429 0.2958 -0.10132 -0.13393 0.31498 -0.23826 0.91804 -0.039801 0.11991 0.41999 0 0.040233 -0.024798 -0.043873 -0.2407 -0.01106 0.0055529 -0.056038 3.6569 -0.16217 -0.012438 0.33555 0 -0.45244 -0.22969 0.59368 0.069095 -0.031632 2.6718 0.23303 -0.097363 -0.12875 1.2739 -0.21624 -0.61873 0.5562 -0.09009 -0.0038224 0.50186 0.32947 3.6569 0.016705 2.1325 -0.047936 -0.026167 -0.042517 -0.017941 -0.23948 -0.30181 0.34892 0.040219 0.10818 -0.060076 0.38171 0.95263 -0.047936 1.439 -0.015191 -0.35053 -0.31354 0.19162 -0.20995 -0.11391 -0.32982 0.73777 0.24233 0.032445 -0.099999 -0.042517 0.23612 0.32947 -0.024798 0.24321 0.67957 -0.1628 0.054803 3.6569 -0.10394 0.19771 -0.10526 0.31017 -0.039801 0.91804 -0.046583 -0.057649 0.018103 -0.36079 -0.55607 0.0069435 0.084932 -0.030267 1.2243 -0.023429 0.060508 -0.024798 -0.14136 0.63902 -0.099999 -0.058731 0.19162 -0.21367 0.44359 0.022304 -0.050641 -0.058731 -0.013815 0.18872 0.096525 -0.089267 0.03214 0.22222 Amplification Peak 24 - CN values 19q13.13 chr19:33639748-40881781(probes 186373:187089) chr19:38202516-38709198(probes 186819:186862) chr19:37838739-40895576(probes 186786:187091) 0.004807 0.004807 Actual Copy Change Given -0.038442 -0.077478 0.69073 -0.039801 0.20534 1.5441 1.1362 3.6569 -0.024798 -0.0096806 1.0866 0.15846 -0.0083005 -0.12486 -0.14554 -0.012438 0.24233 0.36199 -0.065447 0.012516 -0.074571 -0.014461 1.9177 -0.056038 0.0083351 0.053379 -0.030267 -0.0027707 1.061 0.011121 0.13022 0.58471 -0.003103 0.66583 -0.04428 1.7555 0.25012 -0.12751 -0.67775 0.019491 -0.050641 0.13317 -0.19875 -0.7456 0.04344 -0.59952 -0.031632 -0.20186 -0.013484 -0.031632 -0.30534 0.0083351 -0.14885 -0.046583 -0.039801 -0.042517 -0.077478 -0.073476 0.91602 0.039195 0.77599 -0.27245 -0.01106 0.092753 0.25324 -0.19875 -0.1736 -0.29236 0.4777 1.0738 -0.069792 -0.16726 0.064797 -0.14503 0.09217 -0.14168 -0.10657 -0.095759 -0.07744 0.056228 0.081958 -0.66485 -0.028377 -0.14505 0.004487 -0.18557 -0.26011 -0.48638 -0.12225 -0.10657 -0.074811 -0.052189 0.247 -0.11965 -0.10164 -0.15324 0.013911 0.016705 -0.013815 0.42167 -0.047936 -0.061767 0.21453 0.03214 0.0027745 -0.22355 -0.10899 0.40161 -0.14967 0.11404 0.13613 0.015308 0.88586 0.0069435 0.10089 -0.076145 -0.026167 0.14725 -0.098682 -0.13636 -0.40451 -0.15207 Amplification Peak 25 - CN values 20q13.31 chr20:50775407-56740418(probes 192041:192409) chr20:56137776-56188264(probes 192351:192356) chr20:50721230-57591050(probes 192039:192478) 0.0015232 0.0015232 Actual Copy Change Given 0.013911 0.10526 0.62806 0.19619 0.87787 0.044028 -0.042517 0.61172 2.1756 0.28945 0.030732 0.019503 0.054803 -0.10132 -0.039801 0.41831 0.41664 -0.022058 0.27679 0.17046 0.31498 0.034297 0.82255 2.1296 0.023706 0.064797 0.083487 0.77984 -0.01106 0.034959 0.37183 0.066229 0.0080009 0.061937 0.023706 0.33918 0.32141 -0.043873 0.051956 0.097967 2.196 0.020903 -0.051991 -0.047936 0.73777 0.064797 0.31498 -0.019995 0.019839 0.48975 0.67957 0.060508 0.056228 0.21299 0.71697 0.0069435 0.050534 0.029325 0.15995 0.034959 -0.046583 0.50659 0.14206 0.46229 0.78562 0.77984 0.016705 1.0887 0.22376 0.93223 0.042024 0.30378 0.071966 -0.024252 0.30537 0.33593 0.65737 0.035264 0.19162 0.0097276 0.20076 1.2989 0.09217 0.39602 0.23767 0.30065 0.12727 0.37512 -0.0082987 0.022304 0.067661 0.31338 0.27206 0.41999 0.020903 0.087824 0.19162 0.02511 0.12432 1.5186 -0.032996 0.012516 0.96493 0.27521 0.10235 0.36362 0.07376 3.6569 -0.01106 0.03637 0.43851 0.033549 0.86394 0.43344 0.21453 0.16445 0.023706 -0.094073 0.15995 0.081597 0.59188 0.71886 Deletion Peak 1 - CN values 1p36.21 chr1:12677257-17346451(probes 874:1167) chr1:13931375-14037373(probes 898:907) chr1:1-40376603(probes 1:3167) 1.8666e-11 1.8666e-11 Actual Copy Change Given -0.25285 0.11111 -0.21243 -0.16726 -0.33676 -0.13081 -0.044424 -0.36079 -0.74386 -0.20622 -0.29473 0.0041632 -0.092996 -0.12095 0.5562 -0.41333 -0.23337 -0.15195 -0.07214 -0.15962 -0.15913 0.030071 -0.20441 -0.78159 -0.37211 -0.40893 -0.0069195 0.013911 -0.052708 -0.51856 -0.19375 -0.69776 -0.064428 -0.67131 -0.10657 -0.3551 -0.088109 -0.21243 0.013911 -0.17108 -0.27332 -0.027535 -0.153 -0.72456 -0.27093 -0.0055375 -0.40119 -0.41717 -0.24893 -0.39564 -0.80169 -0.36646 -0.31471 -0.3356 -0.75253 -0.016567 -0.85369 -0.81162 -0.097363 0.0041632 -0.43626 -0.11087 -0.17866 0.023706 -0.013815 -0.17234 -0.07214 -0.58775 -0.034359 -0.080141 -0.017218 -0.10788 -0.057385 -0.13342 -0.077478 -0.37121 -0.6368 -0.06113 -0.045228 -0.06142 -0.30181 -0.30651 -0.027535 -0.24714 -0.3642 0.023023 -0.18118 -0.50619 -0.39675 -0.034359 -0.11835 -0.096044 -0.29945 -0.45779 -0.020687 0.0097276 -0.07214 -0.036538 -0.29591 -0.10263 -0.43083 -0.71968 -0.49057 -0.24192 0.042831 -0.0096806 -0.021717 -0.34366 -0.15444 -0.06142 -0.049289 -0.31004 -0.14039 -0.077478 -0.20622 -0.3112 -0.51959 0.1331 -0.29118 -0.043702 0.097979 0.19923 Deletion Peak 2 - CN values 1q25.1 chr1:174985330-175134711(probes 12307:12322) chr1:175024905-175134711(probes 12311:12322) chr1:175054587-175125154(probes 12314:12321) 4.1592e-05 0.0010767 Actual Copy Change Given 0.86592 0.73777 1.0251 0.32785 0.41459 -0.11911 1.2221 0.54559 -1.1967 0.17648 0.27048 0.47084 0.10089 0.60629 1.0462 0.45547 0.38998 0.44867 0.32785 0.30058 0.34242 0.18939 0.88386 0.75299 0.94241 -0.6509 0.042024 0.02511 1.0483 -0.90646 0.53151 0.73777 0.56287 0.61716 -1.1294 0.38998 0.31498 0.10964 0.71509 1.1166 0.54912 0.16445 0 0.82255 0.66845 2.0982 0.66106 0.76042 0.19047 -0.8401 0.84218 0.058556 0.62079 0.3198 1.3265 0.66845 0.083487 0.45717 0.0083351 0.012516 0.3327 0.009343 0.51228 0.36526 0.8206 0.94854 -1.0811 0.63143 0.036089 0.33593 0.41999 0.82702 0.026514 0.65811 0.056228 0.74157 0.77599 0.036489 0.97729 0.26263 0.1105 0.80889 -0.99792 -0.59979 0.18707 -0.021879 0.048974 1.0189 0.54207 -0.0027707 0.82843 0.67957 -0.86161 1.7711 1.1624 -0.83527 0.023706 0.36362 1.0631 0.19619 0.58291 0.65553 0.64268 0.24078 0.011121 0.077718 0.93477 0.39662 0.65001 0 -0.60041 0.47456 1.1275 -0.30768 0.23612 0.14503 0.40494 0.79431 0.35545 -0.75243 0.55266 0.27837 Deletion Peak 3 - CN values 1q42.13 chr1:228346121-228806043(probes 16780:16807) chr1:228354622-228806043(probes 16781:16807) chr1:228451955-228461586(probes 16795:16796) 0.013587 0.096339 Actual Copy Change Given 1.1231 0.53151 0.3473 0.27363 0.41459 0.42068 0.32302 -0.46419 -0.27093 0.17648 0.087824 0 0.026514 0.38502 0.78562 0.33755 0.38998 0.066229 0.061937 0.30058 0.34242 0.18939 1.3334 0.75299 0.94241 0.2958 0.042024 0.02511 1.0483 -0.22231 0.53151 0.73777 0.45336 -0.58481 -0.10132 0.38998 1.1318 -0.25285 0.40827 1.1166 0.43344 0.16445 0 -0.23214 0.52275 0.11697 1.0209 0.76042 0.19047 0.24078 0.64268 1.0377 0.28469 0 1.1253 0.66845 0.083487 0.71509 0.0083351 0.012516 0.13909 0.2732 0.59908 0.24856 0.6629 0.94854 0.013911 0.55266 -0.013815 0.33593 0.32785 0.82702 0.026514 0.30441 0 0.87388 0.67215 -0.044936 0.81669 0.26263 0.15547 0.33918 -0.0013858 1.7364 0.18707 -0.41607 0.083487 1.0189 0.38667 0.37841 0.65553 0.3669 0.75299 1.8344 1.1624 -0.22601 0.023706 0.36362 1.0631 0.57219 0.58291 0.65553 0.70008 0.24078 0.011121 0.077718 0.75538 0.071966 0.016705 0 0.62442 0.11111 1.4822 0.37183 0.16295 -0.81491 0.22376 0.79431 0.74347 0.70218 0.55266 -0.34251 Deletion Peak 4 - CN values 2q11.2 chr2:99815771-100022927(probes 25247:25262) chr2:99824974-99977946(probes 25248:25254) chr2:99944049-99976661(probes 25252:25253) 2.5799e-58 2.9385e-56 Actual Copy Change Given 0.13022 -0.33214 0.5403 0.10089 -0.5459 0.18164 1.0801 -0.64528 -0.026167 -0.049289 -0.15324 -0.031632 -0.05469 0.31177 0.09217 0.015308 0 0.53151 0.42335 0.080601 0.051956 0.003511 0.79723 0.22684 -0.34481 0.0041632 0 0.16595 -0.043873 0.056228 0.050534 -0.10187 0.29861 0.73019 -0.58284 0.25949 0.26577 0.029325 0.31819 -0.21244 -0.27093 0.044857 -0.030267 0.40494 1.0504 0.37891 0.063366 -0.0034566 0.015643 0.0055529 0.076279 -0.1698 0.15547 0.25636 0.011121 0 -0.23092 0.13465 0.082043 -0.0013858 0.37347 0.41785 0.012516 0.042024 0.17196 0.21146 -0.037082 -0.31587 0.015308 0.29899 0.037782 -0.15452 0.32302 0.0019406 0.23148 0.55266 -0.056038 0.059388 0.05908 -0.039801 -0.19124 0.19923 0.018103 0 -0.050641 0.088566 0.55266 0.019503 -0.030265 0.21453 0.011121 -0.045228 -0.22969 -0.37999 -1.0069 -0.0069195 0.039195 0.22839 -0.20622 0.19162 0.097979 -0.2781 -0.099999 0 -0.029284 -0.23092 0.017053 0.067661 0.0041632 -0.0083005 -0.043873 -0.11704 -0.69776 0.064797 -0.88966 -0.15579 -0.028901 0.031426 -0.058731 -0.047766 0.080601 -0.11312 Deletion Peak 5 - CN values 2q22.3 chr2:145088480-148693935(probes 28571:28916) chr2:146074346-148482824(probes 28665:28899) chr2:145270159-148683945(probes 28592:28915) 8.6777e-07 0.025679 Actual Copy Change Given 0.13022 -0.27571 0.47084 0.10089 -0.37887 0.015887 -0.073476 -1.2929 -0.026167 -0.066788 -0.20124 -0.089434 -0.13652 -0.0069195 0 -0.022058 0 0.40327 0.0097276 0.019503 -0.037082 -0.015837 0.79723 0.026514 -0.34481 0.0041632 0 -1.27 -0.043873 -0.028901 -1.2929 -0.064106 0 0.59009 -0.4695 -1.2342 -0.40008 0.029325 -0.24922 0.48112 -0.36696 -1.1408 0.069095 -0.27929 0.3669 -0.64057 0.019503 -0.007604 -0.013484 -0.0027707 -0.7482 -0.38783 0.013911 -0.17487 -0.016567 -0.0041546 -0.34595 0 0 -0.057385 0.044857 0.045883 -0.0041546 0.046275 0.013911 -0.038442 -0.037082 -0.44921 -0.030267 -0.11051 0.050534 -0.27691 0.04344 0.0019406 0.23148 -0.057385 -0.19875 0.040915 -0.0027707 0.0013868 -0.19375 -0.032996 -0.0027707 0 -0.015191 0.088566 0.11991 -0.066788 -0.0041528 -0.23704 0 -0.45565 0.03214 -0.44275 0.029325 -0.0069195 -0.043873 -0.026167 -0.1698 -0.14811 0.020903 -0.29473 0.057653 0 0.0086055 -0.24679 -0.031293 -0.030267 -0.015191 -0.010906 -1.2929 -0.23459 0.34892 0.07484 0.15846 -0.041159 -1.2929 -0.020011 -0.032996 0.00017498 0.080601 -0.23948 Deletion Peak 6 - CN values 3p14.3 chr3:49934011-78174118(probes 40481:42624) chr3:57080154-57128329(probes 41193:41196) chr3:49934011-77637035(probes 40481:42570) 0.00046358 0.00046358 Actual Copy Change Given 0.37841 -0.047936 -0.10788 0.0027745 0.097979 -0.1165 -0.51651 -0.44059 0.030732 -0.15707 0.16895 -0.16217 -0.3356 0.81279 0.082043 0.09217 -0.041159 -0.3856 -0.195 0.04344 0.051956 0.064125 0.084932 0.089272 -0.28168 0.033549 -0.022058 -0.44491 0.046275 0.065134 -0.045228 0.1038 0.045934 -0.66855 0.089272 -0.24557 -0.18873 0.089272 -0.60429 -1.1294e-05 -0.21861 -0.030267 0.064797 0.11844 -0.016567 0.07053 -0.3755 0.01043 0.03107 -0.31471 -0.74647 -0.088557 -0.11574 0.25168 0.053379 0.014644 0.14058 -0.30651 0.093621 0.047694 0.05908 -0.20408 -0.1837 -0.53997 -0.26492 0.36199 0.039195 0.37512 0.030732 -0.28762 0.11991 0.022304 -0.15324 0.03976 -0.096044 0.23612 -0.05469 0.039501 -0.039801 -0.026167 0.18859 0.033549 0.0066706 0.10766 -0.20871 -0.12549 -0.20124 -0.20498 0.40494 -0.3088 0.056228 0.16895 -0.11704 -0.28406 0.09072 0.019503 0.086377 0.11404 0.16745 -0.035721 -0.25143 0.060508 -0.077478 -0.22724 0.097979 0.15099 0.14392 -0.40893 0.073402 0.029325 0.25793 -0.28159 0.0055529 -0.32982 0.25793 -0.33098 0.09217 0.30297 0.13613 0.37862 -1.2929 0.026514 Deletion Peak 7 - CN values 3q29 chr3:194071059-198022430(probes 50693:50870) chr3:196220679-198022430(probes 50834:50870) chr3:194180674-198022430(probes 50706:50870) 0.021155 0.020638 Actual Copy Change Given -0.3856 -0.047936 0.35871 -0.01508 0.029325 0.58724 0.46913 -0.55707 -0.14297 0.12727 0.16895 0.20076 -0.18873 0.63353 -0.39118 -0.14039 -0.19249 0.5088 0.37677 0.04344 -0.024798 -0.17799 1.1536 0.0041632 -0.28168 -0.064106 -0.022058 0.049114 0.046275 0.065134 -0.31237 0.1038 0.045934 0.0041632 0.029325 -0.28287 -0.34481 -0.18118 -0.77056 -1.1294e-05 -0.24314 -0.17613 -0.064106 -0.2 0.18707 0.07053 0.6629 0.01043 -0.014861 0.022304 1.3473 -0.14168 -0.33676 0.25168 0.053379 0.014644 0.093621 0.087824 0.073402 0.047694 -0.096044 0.074443 0.1155 -0.11574 0.31177 0.34404 0.080601 -0.05469 -0.041159 0.09072 0.069095 0.43007 0.096525 0.03976 -0.27929 0.23923 -0.11574 -0.028606 0.018103 -0.0055375 0.20076 -0.46206 0.019503 0.10912 0.56863 0.13541 -0.026167 -0.37098 0.0013886 0.097979 0.056228 -0.38448 0.247 0.17347 -0.032996 0.0027745 -0.0083005 0 0.16745 0.31017 0.034959 0.060508 0.050534 0.12579 0.099433 0.077718 0.015655 -0.28525 -0.29 0.029325 -0.076145 -0.21861 0.48113 -0.53083 -0.11835 0.21975 0.45207 0.30297 0.13613 0.11422 0.53327 0.046275 Deletion Peak 8 - CN values 4p15.32 chr4:1-41263759(probes 50871:53543) chr4:15951269-16097273(probes 51942:51955) chr4:8621168-36099130(probes 51524:53118) 0.0060174 0.0057187 Actual Copy Change Given -0.12095 -0.11182 -0.20498 -0.14039 -0.038852 -0.27902 -0.022058 -1.2929 0.0055529 -0.07214 -0.33329 -0.11182 0.047694 -0.11965 0.019503 -0.38895 -0.20622 0.83825 -0.248 -0.11835 0.0368 -0.034719 -0.023429 -0.037082 -0.71123 -0.0013858 -0.10359 -0.026167 -0.022058 -0.07952 -0.17992 -0.62827 0.0093932 -0.61681 -0.60815 -0.27212 -0.36306 -0.076145 -0.72279 0.10031 0.15248 -0.031074 0.0070622 0.0041632 -0.17107 -0.030267 -0.16853 -0.014796 -0.28377 0.053379 -0.68597 -0.0027707 -0.031632 0.62806 -0.047936 -0.023429 -0.23214 -0.41992 -0.35053 -0.026167 -0.027535 -0.27962 -0.05469 0.17196 -0.28049 -0.064106 -0.010269 -0.39897 -0.051991 0.019503 -0.31937 -0.12356 0.018103 -0.048749 -0.023772 -0.14168 0.79336 0.0044633 -0.082801 -0.013815 -0.07881 -0.40782 0.07447 -0.041647 -0.20374 -0.086104 0 -0.14811 -0.085455 -0.2763 -0.023429 -0.082801 -0.17992 -0.39897 -0.0055375 0.022304 0 -0.032996 -0.42538 -0.10526 -0.039133 -0.60488 -0.0055375 0.13169 -0.046583 -0.2781 -0.052978 0.012516 -0.016567 -0.020687 -0.29709 -0.63585 0.61534 -0.34939 -0.17107 -0.27452 -0.01106 0.021593 -0.080141 0.0015619 -0.45244 -0.54603 Deletion Peak 9 - CN values 4q25 chr4:113435945-113970926(probes 58993:59011) chr4:113568236-113970926(probes 59009:59011) chr4:113569071-113980885(probes 59011:59012) 3.8865e-18 2.2061e-16 Actual Copy Change Given 0.54912 -0.064106 -0.15962 0.09579 -0.021206 -0.17814 -0.026167 0.46741 0.063366 -0.07214 0.003754 -0.012438 0.069095 -0.13264 -0.75599 0.0083351 -0.082801 0.44698 1.0483 -0.11835 0.054803 -0.010328 -0.023429 -0.0041546 0.07053 -0.0013858 -0.0083005 -0.026167 0.019503 -0.01106 -0.17992 -0.62827 0.0052191 -0.68506 0 -0.27212 0.16895 -0.023429 -0.67039 0.15465 0.24389 -0.013815 0.099433 -0.15962 -0.05469 -0.030267 -0.16347 0 -0.067806 0.022304 0.17347 0.086377 -0.13135 -0.17234 -0.0024836 -0.023429 -0.24436 0.027919 -0.11443 -0.026167 0.022304 -0.088475 -0.05469 -0.35965 -0.25769 -0.074607 0.071966 0.084932 -0.016567 0.019503 -0.28287 -0.12356 -0.035721 0.022864 0.2548 -0.028901 0 0.055111 0.0055529 0 -0.12746 -0.29118 0.015308 -0.14857 -0.017941 -0.029567 0 -0.27929 0.0069453 -0.05469 -0.023429 0.084932 -0.050641 -0.24192 -0.0055375 0.022304 0 -0.032996 -0.40451 -0.019314 0.020903 -0.59458 -0.038442 -0.20622 -0.046583 -0.24922 0.3331 0.22839 0.03637 -0.020687 0.30697 -0.21614 -0.11312 -0.32751 -0.17107 -0.086784 -0.01106 0.12799 -0.080141 0.0015619 -0.45244 -0.047936 Deletion Peak 10 - CN values 4q33 chr4:170191694-170549655(probes 63660:63700) chr4:170301489-170549655(probes 63671:63700) chr4:170428031-170455441(probes 63686:63687) 2.3986e-05 0.00081881 Actual Copy Change Given 0.54912 -0.064106 -0.15962 0.09579 -0.021206 -0.17814 0.15248 -0.0013858 0.063366 -0.07214 0.003754 -0.012438 0.069095 -0.13264 0.056228 0.020903 -1.0374 -0.17866 -0.030267 -0.11835 0.054803 -0.010328 -0.34533 -0.0041546 0.07053 -0.0013858 -0.0083005 -0.026167 0.019503 0.50707 -0.17992 -0.62827 0.0052191 0.0014966 0 -0.35624 -0.23948 -0.023429 -0.67499 0.15465 0.24389 -0.013815 0.099433 -0.15962 -0.33791 -0.030267 -0.28168 0 -0.067806 0.022304 -0.69505 0.086377 -0.13135 -0.17234 -0.0024836 -0.023429 -0.24436 -0.45565 -0.11443 -0.026167 0.022304 -0.088475 -0.05469 -0.35965 -0.25769 -0.074607 0.071966 0.084932 -0.016567 0.019503 -0.28287 -0.12356 -0.035721 0.022864 0.2548 -0.028901 0 0.055111 0.0055529 0 -0.12746 -0.29118 0.015308 -0.14857 -0.017941 -0.29057 0.097979 -0.27929 0.0069453 -0.05469 -0.023429 0.14801 -0.050641 -0.77736 -0.0055375 0.022304 0 -0.032996 -0.40451 -0.21119 -0.1092 -0.59458 -0.1837 0.42335 -0.046583 -0.24922 0.088184 0.084932 0.03637 -0.020687 -0.59653 -0.24922 -0.11312 -0.32751 -0.17107 -0.086784 -0.01106 0.12799 -0.080141 0.0015619 -0.45244 -0.047936 Deletion Peak 11 - CN values 5q13.2 chr5:68721792-70888563(probes 69640:69662) chr5:68731562-70761362(probes 69641:69642) chr5:56233466-81313402(probes 68672:70628) 5.8426e-05 5.8426e-05 Actual Copy Change Given -0.3217 -0.015191 -0.14039 -0.043873 0 -0.0063465 0.023706 -0.84731 0.0069435 0.011121 -0.32635 -0.20995 0.071966 -0.11443 0.050534 -0.039801 -0.23214 0.056228 -0.25285 -0.56107 -0.056038 -0.017218 -0.56704 0.012516 0.044852 -0.0083005 0.10818 0.013911 0 -0.42974 0 0.72074 0.0066095 -0.71301 0.034959 -0.29709 -0.28644 0.0041632 -0.08413 -0.017952 0.25324 0.087824 -0.45244 0.38501 -0.2781 -0.0069195 0.073402 -0.49944 0 -0.36759 -0.70765 -0.17866 -0.14039 -0.3112 0 0.023706 -0.08413 -0.42757 -0.2407 -0.057385 0.019503 -0.37243 0.076279 -0.31354 -0.25648 1.108 0.050534 -0.28644 -0.0096772 0.0013868 0.03637 -0.034359 -0.015191 0.018662 -0.13523 0.17196 0.38006 0.04233 0.013908 -0.59068 0.076279 -0.073476 -0.13264 0.34184 -0.25285 -0.23886 -0.10263 -0.34021 0 -0.21861 -0.0041546 -0.53388 -0.043873 0.19314 -0.080141 0 0.10235 -0.022058 -0.053341 -0.54401 -0.017941 -0.0013858 -0.081472 -0.058731 -0.051991 0.033549 0.043792 -0.051991 0.069095 0.0013868 -0.25769 -0.59263 -0.6537 -0.34824 0 -0.10657 0.40661 0.24777 0.090729 -0.010886 -0.45136 -0.17107 Deletion Peak 12 - CN values 6p22.1 chr6:27370258-27925489(probes 80984:81002) chr6:27430098-27839887(probes 80990:80996) chr6:25983655-27944598(probes 80910:81004) 1.6717e-14 1.6717e-14 Actual Copy Change Given 0 0.13613 0.94854 -0.13264 0.36526 -0.0077279 0.34404 -0.060076 0.002338 0 0.22684 -0.18118 -0.042517 0.38667 -0.05469 -0.068127 -0.022058 -0.43301 -0.42538 -0.0096806 -0.042517 -0.047219 0.8699 -0.012438 0.0083351 0.0027745 -0.070804 -0.023429 -0.07881 -0.050641 -0.1837 -0.83041 -0.0058694 0.674 -1.2895 0.11111 -0.30651 0.0013868 -0.037082 -1.2241 -0.37324 0.0013868 -1.1894 -0.68232 0.34404 -0.060076 0.044857 -0.11899 -0.046258 0.019503 0.55089 -0.010885 0.0069435 0.12874 0.59908 -0.043873 0.012516 0.083487 0.067661 -0.020687 -0.064106 0.045883 -0.085457 0.069366 0.36526 0.12285 -0.88271 0 0.015308 -0.017941 -0.28406 0.26577 -0.0055375 -1.2929 -0.14168 0.10964 -0.10395 0.025413 -1.2755 0 -0.47162 -0.55507 0.02511 0.50297 -0.29355 -0.047243 -0.23582 2.0474 0.13761 -0.39118 -1.2203 -0.50308 -1.0618 -0.12095 -0.030267 0.04344 -1.1438 -0.089434 0.053379 0.082043 -0.026167 -0.041159 -0.089434 0.046275 -0.074811 -0.2781 -0.0010412 0 -1.1099 -0.032996 0.71509 0.37019 0.17648 0.84218 -1.0474 0.097979 -0.019314 -0.99827 0.1901 -0.0095064 0.44698 0.42839 Deletion Peak 13 - CN values 6q26 chr6:160931352-161127530(probes 90617:90631) chr6:160940811-161127530(probes 90618:90631) chr6:155136901-171115067(probes 90092:91081) 1.8676e-09 1.9081e-09 Actual Copy Change Given -0.030267 0.047885 -0.19875 -0.27571 -0.38672 -0.36259 -0.1774 0.36698 -0.66395 0 -0.34251 -0.039227 0.027919 -0.16472 0.053379 -0.0025287 0.18556 -0.65463 0.11111 -0.0096806 0.034226 -0.014461 -0.063364 0 0.0025396 0.0027745 -0.0096806 -0.56722 -0.60619 -0.047936 -0.089434 0.049114 -0.0058694 1.1339 -0.45993 -0.027535 -0.1609 -0.19625 -0.9804 0 -0.36818 -0.17107 -0.65629 -0.28644 0.063366 0.022015 0 0.41246 0.00033285 0.030732 -0.67019 0.059885 0.13169 0.22839 -0.027535 -0.0083005 -0.78749 0.24856 -0.047936 -0.0013858 -0.21243 0.099032 -0.098682 0.3408 0.74918 0.17347 -0.684 -0.29591 0.049114 0.07484 -0.28312 -0.19124 0.050534 0.045423 -0.31821 -0.46738 0.060508 -0.64976 -0.42623 -0.013815 -0.06467 -0.5311 -0.014717 0.01062 0.02123 -0.094047 -0.20202 0.18589 0.38871 0.14427 0.012516 0.83235 -0.54703 0.089272 0.017855 -0.0047943 -0.0067868 -0.050587 0.11111 -0.07214 -0.019314 0.020903 0.61897 0.34567 8.9378e-05 -0.22846 0 0.0027915 0.024345 -0.037149 -0.098682 -0.019219 0.037851 -0.37775 -0.20622 0.063111 -0.068127 0 0.15099 0 0.45717 -0.17866 Deletion Peak 14 - CN values 7q11.23 chr7:74867286-75038052(probes 96170:96189) chr7:74973526-75038052(probes 96183:96189) chr7:55863696-75216110(probes 95307:96214) 6.6878e-33 3.5841e-31 Actual Copy Change Given 0.22684 0.15248 0.81279 0.20076 -0.35396 0.020083 0.83825 0.36854 0.029325 0.27363 -0.12486 0.14206 -0.077478 1.3823 -0.16472 -0.10788 -0.32982 -0.22969 -0.45351 0.15846 -0.248 -0.019959 0.29899 -0.015191 0.042024 0.044857 -0.19087 1.0568 -0.5897 -0.032996 0.29421 0.057653 -0.00033283 -0.32054 -0.016567 0.03214 -0.017941 -0.18244 0.0041632 -0.0096918 -0.28049 0.079159 -0.0027707 0.076279 0.19771 0.022304 -0.11574 -0.080801 -0.018985 -0.10657 -0.15452 0.029325 0.04344 -0.53794 -0.031632 -0.21119 -0.3112 -0.44167 0.067661 -0.0083005 -0.073476 0.028937 -0.058731 -0.089434 -0.028901 -0.1736 -0.0055375 0.057653 0.042024 -0.0041546 0.0055529 0.70382 0.31017 -0.52941 -0.07214 0.12285 -0.34595 -0.031337 -0.0027707 -0.031632 0.22839 0.45717 -0.3356 -0.2987 -0.40893 0.15474 -0.0055375 0.11844 -0.058729 0 -0.66947 0.5245 0.084932 -0.0027707 -0.0027707 0.049114 0.047694 0.0055529 -0.19249 -0.077478 -0.29236 0.0069435 -0.22478 -0.035721 -0.17107 -0.0027707 -0.05705 0.030732 -0.31587 0.010528 0.45547 0.71697 -0.16726 0.0055529 0.14652 -0.07214 0.0097276 0.25557 -0.40119 0.26911 -0.43951 1.2761 Deletion Peak 15 - CN values 7q22.1 chr7:99801692-99974170(probes 97957:97972) chr7:99913438-99964267(probes 97970:97971) chr7:99831263-99984073(probes 97960:97973) 2.8656e-06 0.013587 Actual Copy Change Given 0.22684 0.15248 1.7529 -0.0096806 -0.35396 0.020083 0.39828 0.99592 0.029325 0.27363 -0.12486 0.14206 -0.077478 1.3823 0 -0.33906 0.25636 0.47942 -0.24436 0.15846 -0.248 0.037119 0.52801 -0.015191 0.042024 -0.0069195 -0.034359 -0.41003 -0.54703 -0.032996 0.29421 0.057653 -0.00033283 0.65001 0.056228 0.07053 -0.017941 0.10436 0.74537 -0.0096918 0.023706 0.079159 -0.0027707 0.076279 0.19771 0.022304 -0.11574 -0.080801 -0.018985 -0.39118 0.0027745 0.029325 0.04344 -0.53997 -0.031632 0.0013868 -0.0027707 0.48285 0.057653 -0.0083005 -0.073476 0.028937 -0.058731 -0.089434 -0.028901 -0.1736 -0.0055375 0.057653 0.09217 -0.3112 0.0055529 0.70382 1.0356 0.024266 -0.07214 -0.32519 -0.31937 -0.031337 -0.0027707 -0.031632 0.40327 0.45717 -0.028901 0.026009 0.24544 0.098724 -0.080141 0.30697 -0.058729 0 0.020903 0.5245 0.07484 -0.0027707 -0.0027707 -0.027535 0.047694 0.0055529 0.096525 0.77791 -0.076145 0.0069435 0.14058 1.2716 0.023706 -0.0027707 -0.05705 -0.0041546 0.089272 0.010528 0.45547 1.0546 -0.031632 0.0055529 0.14652 -0.07214 0.0097276 0.25557 -0.017941 0.26911 -0.37999 1.2761 Deletion Peak 16 - CN values 8p23.1 chr8:1-8650017(probes 102622:102906) chr8:6774939-8570310(probes 102897:102898) chr8:1-37914688(probes 102622:104833) 6.8189e-18 1.4637e-10 Actual Copy Change Given -0.30886 0.22068 -0.25043 0.18102 -0.78159 -0.14886 -0.51445 -0.4695 -0.65929 0.18253 -0.46419 -0.3356 -0.31587 0.63902 -0.031632 -0.40451 0.5088 0.16745 -0.18873 -0.12095 -0.39341 0.061266 -0.085457 0.034959 -0.30181 -0.49684 0.23612 -0.36759 0.012516 0.53503 -0.06142 0.21914 0.010786 -0.62732 0.05908 0.41496 0.5088 -0.14554 0.10526 0.76253 -0.35168 -0.13781 -0.63206 -0.22601 -0.30886 0.022304 -0.34595 0.31098 -0.22079 -0.32635 -0.63112 0.030732 -0.36533 -0.41882 -0.015191 0.15248 -0.7967 -0.36306 -0.29355 -0.27571 0.11111 -0.37581 -0.067737 0.44528 -0.19875 0.97935 -0.67407 -0.90949 -0.0083005 -0.47797 0.066229 0.61746 -0.22231 -0.017392 -0.0055375 -0.38895 -0.37887 -0.31912 -0.4034 0.029325 0.47084 0.15397 0.030732 -0.03893 -0.25043 -0.21179 -0.104 -0.78833 0.012517 -0.065447 -0.06142 -0.29 0.57041 0.16595 -0.62922 0.025476 -0.18622 0.0097276 -0.77821 -0.0055375 0.037782 0.03214 -0.80003 -0.16217 -0.08413 -0.70496 -0.043536 0.033549 -0.045228 -0.07881 -0.31937 0.096525 0.37841 -0.35852 -0.33906 -0.33445 -0.40893 -0.0020886 0.12579 0.32967 -0.41553 -0.18496 Deletion Peak 17 - CN values 8p21.2 chr8:24350073-25111178(probes 104107:104117) chr8:24793568-25111178(probes 104114:104117) chr8:1-37914688(probes 102622:104833) 1.1138e-14 4.5414e-05 Actual Copy Change Given -0.30886 0.45547 -0.25406 0.18102 -0.78159 -0.19197 -0.51445 -0.4695 -0.65929 0.12579 -0.46419 -0.3356 0.67215 0.63902 -0.031632 -0.40451 0.51926 -0.013815 -1.2929 -0.12095 -0.39341 0.061266 -0.085457 0.034959 -0.30181 -0.49684 0.23612 -0.36759 0.012516 0.4657 -0.06142 0.21914 0.010786 -0.64057 0.05908 -0.40008 -0.28762 -0.14554 0.026514 0.76253 -0.35168 -0.13781 -0.63206 -0.22601 -0.39786 0.022304 -0.34595 0.31098 -0.22079 -0.32635 -0.03676 0.030732 -0.36533 -0.65277 -0.015191 0.15248 -0.7967 -0.47162 -0.29355 -0.27571 -0.30651 -0.37581 -0.067737 0.44528 -0.19875 0.97935 -0.67407 -0.58775 -0.14039 -0.47797 0.066229 0.61746 -0.22231 -0.017392 -0.20374 -0.38895 -0.37887 -0.31912 -0.4034 0.029325 0.58112 0.15397 0.030732 -0.03893 -0.25043 -0.21179 -0.11051 -0.84491 0.012517 -0.55106 -0.06142 -0.54905 0.27679 0.12579 -0.74994 0.025476 -0.41113 0.0097276 -0.77821 -0.0055375 0.037782 0.03214 -0.80003 -0.18873 -0.08413 -0.79586 -0.043536 0.033549 -0.045228 -0.24922 -0.31937 0.096525 0.37841 -0.35852 -0.33906 -0.33445 -0.05469 -0.0020886 0.12579 0.32967 -0.51651 -0.16217 Deletion Peak 18 - CN values 9p21.3 chr9:20613198-26806001(probes 113086:113356) chr9:21471551-22019612(probes 113161:113183) chr9:19622279-26129928(probes 113056:113313) 0.00051218 0.00048739 Actual Copy Change Given -0.057385 0.3198 0 -0.30416 -0.25406 -0.15526 0.11844 -0.028901 -0.041159 -0.13781 0.0069435 0.020903 -0.16599 0.74918 -0.78665 0 -0.34021 -0.75599 -0.26372 0.018103 -0.099999 0.013256 0.047694 0.011121 -0.31003 -0.034359 -0.043873 -0.4232 -0.01106 -0.0083005 0.0097276 0.044857 -0.0017184 -0.032996 0 0.32947 0.13022 -0.13523 -0.67131 0.13464 -0.35683 -0.074811 -0.0027707 -0.28049 0.051956 0.013911 -0.23092 -0.00068689 0.08239 -0.015191 -0.6565 -0.046583 -0.024259 0.18253 0.012516 0.02511 0.061398 0.07484 -0.34021 0.046275 -0.047936 -0.71593 -0.14039 0.11844 0.79336 0.17196 0.033549 -0.23214 -0.089434 0.20687 0.066229 0.26577 -0.1698 -0.020139 -0.28762 -0.40119 -0.41223 -0.017644 -0.012438 0.053379 -0.25769 0.019503 -0.027535 -0.27375 -0.25527 -0.19561 -0.23948 -0.28406 0.064799 -0.17234 0.080601 -0.2407 -0.15067 -0.25769 -0.023429 -0.0096806 0.039195 0 0.12727 -0.19375 0.042024 -0.72632 -1.1989 -0.28406 -0.097363 0.049114 0.17988 -0.14554 -0.0083005 -0.0055375 -0.2407 0.14652 -0.081472 -0.34481 -0.098682 -0.085457 0 -0.03505 -0.22724 -0.013641 0.45377 -1.231 Deletion Peak 19 - CN values 9q22.32 chr9:99060722-99219443(probes 116992:117010) chr9:99068340-99160460(probes 116993:117004) chr9:99083575-99180121(probes 116995:117006) 0.011689 0.015349 Actual Copy Change Given -0.057385 -0.069466 -0.14039 0.071966 -0.25406 0.029909 0.011121 -0.48218 -0.041159 -0.46206 -0.1092 0.015308 -0.17487 -0.13264 -0.86712 -0.52981 -1.2929 0.47942 -0.063948 0.018103 -0.099999 0.013256 0.0083351 -0.75167 -0.31003 -0.034359 0.012516 0.03637 -0.01106 -0.0083005 0.0097276 0.044857 -0.0017184 0.68143 -0.0013858 -0.28406 -0.082801 -0.28644 -0.72544 -0.44922 -0.41003 -0.074811 -0.0027707 -0.28049 -0.24922 0.016705 -0.32867 -0.00068689 0.08239 -0.015191 -0.017941 -0.43518 -0.024259 0.18253 0.012516 0.02511 0.011121 0.07484 -0.15067 0 -0.047936 -0.12522 -0.14039 -1.2 -0.26372 -0.13523 -0.14939 0.067661 0.063366 0.14801 -0.31587 0 -0.013815 -0.020139 -0.094724 -0.22478 0.25324 -0.017644 -0.012438 -0.012438 -0.25769 -0.35852 -0.027535 -0.29515 0.44528 0.027234 0.019503 0.057653 -0.032994 0.10526 -0.047936 -0.027535 -0.15195 -0.78665 -0.023429 0.013911 -0.056038 0 0.10526 -0.098682 -0.013815 -0.0083005 -0.0083005 -0.34136 -0.41333 0.049114 -0.017599 -0.30063 -0.0083005 -0.0055375 -0.2781 0.17498 -0.088109 -0.38672 -0.13005 -0.12616 0 -0.03505 0.095072 -0.0025959 0 -0.20249 Deletion Peak 20 - CN values 9q34.13 chr9:130904022-141213431(probes 119626:120514) chr9:135446658-135979089(probes 120066:120114) chr9:134585039-135996449(probes 119993:120116) 0.16518 0.23266 Actual Copy Change Given -0.057385 -0.069466 -0.14039 0.071966 0.12579 0.029909 0.011121 -0.43192 -0.041159 -0.13264 -0.13264 0.095072 -0.17487 -0.13264 -0.97615 0.029325 -0.16599 -0.2407 0.0027745 0.018103 -0.099999 0.013256 0.011121 -0.72721 -0.47691 0.054803 0.012516 0.03637 -0.039801 -0.0083005 0.0097276 0.044857 -0.0017184 -0.67131 -0.0083005 -0.28406 0.5562 -0.41223 -0.69866 0.13464 -0.33203 -0.074811 -0.05469 -0.42974 -0.24922 0.016705 -0.39007 -0.015873 0.08239 -0.015191 -0.017941 -0.13813 0 -0.28525 0.012516 0.02511 0.011121 -0.44921 -0.15067 0 -0.047936 -0.12522 0 -0.3551 -0.27452 0.05908 -0.01106 0.067661 0.063366 0.14801 0.041234 0.05908 -0.24679 -0.020139 -0.094724 0.59728 0.34567 -0.013518 -0.012438 -0.012438 -0.22724 -0.032996 0.0055529 -0.29515 0.28945 0.088309 0.029325 0.083487 -0.032994 0.10526 -0.047936 -0.11182 -0.195 0.77791 0.013911 0.015308 -0.056038 0 0.10526 0.49493 0.0069435 -0.0083005 -0.44167 0.011121 0.079159 0.049114 -0.036743 -0.18244 -0.020687 -0.0055375 -0.2781 -0.18118 -0.088109 -0.38672 -0.24314 -0.12616 0 -0.03505 0.051956 -0.0025959 0.05908 -0.20249 Deletion Peak 21 - CN values 10p13 chr10:11375582-32740709(probes 120998:122638) chr10:14958481-16576190(probes 121296:121382) chr10:14563248-19641079(probes 121254:121580) 0.055863 0.058713 Actual Copy Change Given 0.55797 0.17498 0.52625 -0.37324 0.013911 0.1264 -0.13393 0.2974 -0.0041546 0.17799 -0.11965 0.69447 -0.3856 0.50186 -0.1698 -0.52266 0.61897 0.053379 0.0013868 -0.24436 -0.0083005 -0.025441 1.6859 -0.076145 0.046275 -0.024798 -0.038442 -0.07881 -0.058731 0.029325 -0.068127 -0.3217 -0.033323 -0.73337 0.061937 0.2642 0.93223 -0.35396 -0.35624 -0.80004 0.20687 0.047694 -0.089434 0.05908 0.43344 -0.13781 -0.057385 -0.19312 -0.11019 0.040609 0.25793 2.6589 -0.28881 -0.33906 -0.028901 -0.11574 -0.073476 -0.093403 -0.10132 -0.031632 -0.090758 -0.38479 0.026514 0.38502 0.22068 -0.248 -0.26011 0.2958 0.029325 -0.28287 -0.38783 0.39662 -0.042517 -0.15656 -0.11835 -0.25285 0.18859 -0.023133 -0.065447 -0.094724 -0.094724 0.4863 0.0027745 0.11498 0.15248 0.62535 0.0083351 -0.013815 -0.17107 -0.11051 -0.15195 -0.20871 0.33593 -0.4695 -0.086784 -0.035721 -0.1975 -0.12875 0.057653 -0.020687 -0.13393 -0.088109 -0.25527 -0.046583 -0.092081 -0.21861 -0.059742 -0.57397 -0.14939 -0.11574 1.451 1.8106 0.33593 -0.064106 -0.29236 0.011121 -0.47056 -0.10067 0.13465 -0.020514 0.018103 -0.47268 Deletion Peak 22 - CN values 10q21.3 chr10:54053539-135534747(probes 123715:129850) chr10:70209895-70256989(probes 124670:124673) chr10:70206112-70305942(probes 124669:124678) 0.10905 0.11098 Actual Copy Change Given -0.097363 0.16745 -0.17992 -0.26011 0.013911 -0.15142 -0.57397 0.037782 -0.0096806 -0.10657 -0.11965 -0.29 -0.22724 0.44528 -0.41882 -0.066788 0.13761 -0.16726 0.18707 -0.14425 -0.030267 -0.025441 -0.039801 -0.0055375 0 -0.05469 -0.038442 -0.020687 -0.024798 -0.019314 -0.031632 -0.29355 -0.033323 0.54206 -0.026167 -0.33098 0.11257 -0.053341 0.14206 -0.085468 -0.36873 0.077718 -0.046583 0.054803 0.4932 0 -0.25769 -0.43137 -0.11019 -0.038442 0.011121 0.13465 -0.18118 -0.62827 -0.028901 -0.019314 -1.142 -0.013815 -0.058731 -0.031632 -0.090758 0.062971 0.079159 0.15397 -0.26973 -0.1609 0.022304 0.0013868 -0.015191 -0.39007 -0.29473 -0.15067 -0.0055375 -0.037899 -0.30886 -0.13135 0.28786 -0.023133 -0.019314 -0.032996 -0.041159 -0.42429 -0.047936 -0.31513 0.15248 -0.094047 0.0083351 -0.42429 -0.056036 -0.0096806 -0.046583 -0.41333 0.083487 -0.43409 -0.086784 -0.035721 -0.086784 -0.032996 0.057653 -0.057385 -0.021437 0.0013868 -0.053341 -0.054636 -0.041159 -0.022058 -0.059742 -0.024091 -0.051991 -0.027535 -0.31354 0.049114 0.41999 0.053379 -0.23948 0.43513 -0.0083005 -0.04727 -0.0027707 -0.020514 0.018103 0 Deletion Peak 23 - CN values 11p15.5 chr11:1-470166(probes 129851:129859) chr11:170384-470166(probes 129856:129859) chr11:1-480096(probes 129851:129860) 2.3976e-07 3.5611e-07 Actual Copy Change Given -0.050641 0.17196 -0.15707 -0.13264 0.19531 0.17409 -0.45962 -0.41443 0.0083351 0.2548 -0.3427 -0.024798 -0.031632 -0.034359 0.099433 0.19771 0.51926 0.077718 0.33432 0.077718 -0.0078177 0.004288 0.46913 0.28945 0.11844 0.15547 0.18707 0.52245 0.030732 0.097979 0.26577 0.056228 0.42967 -0.63112 0.16745 0.10818 -0.13781 0.27363 0.27837 0.50879 -0.066628 0.13169 0.084932 0.014214 -0.32286 0.25012 0.020903 0.10797 0.089619 -0.29236 -0.72611 0.21844 0.15846 0.0055529 -0.51753 0.097979 0.1155 0.40661 0.17799 0.1155 0.10818 -0.068497 0.11991 0.25949 0.012516 -0.06142 0.098851 -0.18622 0.20687 -0.21367 -0.17613 -0.22355 0.066229 0.14247 0.21299 0.37677 -0.081472 0.062245 0.057653 0.066229 -0.45136 0.1038 0.084932 -0.41373 -0.092081 -0.032297 0.057653 -0.26612 0.067663 0.21914 0.12579 -0.25164 -0.13005 -0.086784 0.16145 0.09072 0.082043 0.09072 0.19162 0.21453 0.14206 0.11111 -0.41882 0.29104 0.13613 0.22993 0.14437 0.037782 0.060508 0.097979 -0.15707 -0.43951 -0.041159 -0.26131 0.2958 0.17799 0.17347 -0.26673 -0.073476 0.032318 0.23612 0.61172 Deletion Peak 24 - CN values 11p11.12 chr11:48371312-56043604(probes 133139:133210) chr11:49036565-49069250(probes 133148:133151) chr11:48997300-50003572(probes 133140:133208) 0.050944 0.11802 Actual Copy Change Given -0.25164 0.016056 -0.10263 0.020903 0.097979 0.10733 0.54383 -0.40008 0.0083351 0.11697 0.13909 -0.012438 -0.051991 0.70945 -0.83527 -0.501 0.27048 -0.1092 -0.33445 -0.074045 -0.034835 0.020245 0.46913 0.12043 -0.31704 -0.01106 0.038385 -0.28406 0.030732 0.097979 0.09217 -0.004821 0.60045 -0.017941 0.059641 0.33593 0.27837 0.046275 0.13613 0.3704 -0.082801 0.064326 0.0065224 0.015308 -0.572 0.12285 0.13317 0.032851 0.089619 -0.43951 -0.027535 0.10342 0.095072 0.14652 -0.64057 0.097979 0.071884 0.04344 0.0013868 0.07484 0.040609 -0.025176 0.061937 0.18404 0.25636 -0.05469 -0.060076 -0.32519 0.084932 -0.41113 -0.17008 0.02511 -0.0027707 0.040794 0.063366 0.11404 0.47598 0.035264 0.057653 0.066229 0.022304 -0.248 -0.015191 -0.047814 0.13613 0.034272 -0.098682 0.48113 0.067663 0.056228 -0.53997 0.03637 -0.13523 0.37841 0.044857 -0.014029 0.029325 0.09072 0.19162 0.24856 0.10818 0.11111 -0.47374 0.1795 0.060508 0.12138 -0.51625 -0.19875 0.060508 0.097979 -0.21186 -0.17866 0.077718 -0.10526 0.073402 0.17799 0.042458 -0.26673 -0.47902 -0.087942 0.13465 0.50012 Deletion Peak 25 - CN values 11q13.3 chr11:69589684-70049708(probes 134293:134337) chr11:69607478-69650714(probes 134295:134298) chr11:69588166-69978663(probes 134292:134330) 4.533e-39 3.7655e-26 Actual Copy Change Given 0.042024 -1.2929 -0.1092 -0.012438 0.55974 0.097128 -0.98674 0.089272 0.71886 0.086377 -1.277 2 -0.065447 0.74727 1.5776 0.084932 -1.2929 -1.286 -1.2929 -0.074045 0.051956 0.079923 -0.037082 3.3703 0.47942 3.0947 0.038385 0.33755 0.030732 0.047694 0.09217 -0.004821 3.6569 0.037782 0.059641 -1.2262 -1.2929 -1.2929 1.4295 0.2689 -0.030267 0.064326 0.012516 3.6569 0.68143 -1.2929 0.22222 0.032851 0.089619 -0.37662 -1.1804 0.16895 0.095072 -0.22108 -1.2929 -1.2929 3.6569 -1.2083 -0.01106 0.07484 -1.1385 -0.025176 0.061937 -0.99653 0.046275 -1.2929 -0.72544 0.22068 -1.1474 -0.019314 -0.21614 0.02511 -1.2929 0.040794 0.063366 0.95878 2.952 0.010029 0.057653 0.066229 0.16445 0.037782 0.0055529 -0.037571 0.033549 0.091463 0.29421 0.66475 0.067663 0.056228 0.050534 0.03637 -0.15324 0.27048 0.044857 -0.014029 0.029325 0.097979 -1.2138 0.24856 -1.1672 -1.2929 -0.76629 0.064797 0.056228 0.12138 0.026863 -0.047936 0.060508 0.069095 -1.2929 -0.13264 -0.046583 0.12579 0.034959 -1.2929 0.042458 -0.26673 0.11991 -0.012055 -1.2929 -1.2929 Deletion Peak 26 - CN values 11q13.4 chr11:70858270-71432906(probes 134406:134428) chr11:71146133-71248181(probes 134407:134416) chr11:71193930-71222606(probes 134412:134413) 5.7596e-08 5.8426e-05 Actual Copy Change Given 0.042024 -0.064106 -0.1092 -0.012438 0.55974 0.097128 1.4058 0.089272 -0.060076 0.086377 0.018103 2 -0.065447 0.74727 2.6396 0.084932 -0.0096806 1.0951 -0.15835 -0.074045 0.051956 0.079923 -0.037082 3.6569 -0.66114 -0.56704 0.038385 0.33755 0.030732 0.047694 0.09217 -0.0013858 1.3144 0.037782 0.059641 0.33918 0.31498 0.030732 0.10235 0.2689 -0.030267 0.064326 0.012516 -0.076145 -0.2781 0.13465 0.22222 0.032851 0.089619 -0.37662 0.0013868 1.1037 0.095072 -0.22108 0.76255 0.039195 0.071966 0.095072 -0.01106 0.07484 0.35218 -0.025176 0.061937 3.6569 0.046275 -0.090758 -0.72544 0.22068 -0.08413 0.029325 -0.21614 0.02511 -0.19375 0.040794 0.063366 0.95878 1.3127 0.010029 0.057653 0.066229 0.16445 0.037782 0.0055529 -0.037571 0.033549 0.091463 0.29421 0.66475 0.067663 0.056228 0.050534 0.03637 -0.15324 -0.058731 0.044857 -0.014029 0.029325 0.097979 0.11991 0.24856 0.023706 0.054803 1.1866 0.064797 0.056228 0.12138 0.026863 -0.047936 0.060508 0.069095 0.14058 -0.13264 -0.046583 0.12579 0.034959 -0.05469 0.042458 -0.26673 0.11991 -0.012055 -0.41113 0.35545 Deletion Peak 27 - CN values 11q22.3 chr11:100837270-126300387(probes 136044:138385) chr11:107647795-107966297(probes 136588:136589) chr11:78780879-135006516(probes 135056:138931) 7.8663e-13 6.6939e-10 Actual Copy Change Given -0.041159 -0.058731 -0.16345 -0.012438 -0.34136 0.032725 -0.52471 0.056228 -0.65557 0.086377 0.018103 -0.060076 -0.23582 0.74727 -0.78328 -0.36646 -0.80086 -0.39118 -0.15835 -0.12789 -0.028901 0.018845 -0.037082 -0.70226 -0.68597 -0.55307 -0.097363 -0.39453 -0.020687 0.047694 0.050534 -0.0041546 -0.3301 -0.71301 0.059641 -0.28762 -0.29118 0.030732 0.10235 0.2689 -0.027535 0.03214 -0.60429 -0.65557 -0.2781 -0.53185 -0.33445 0.032851 0.089619 -0.37662 -0.68141 -0.11574 -0.73512 -0.22108 -0.70854 0.023706 -0.80003 -0.39897 -0.61873 0.07484 -0.25043 -0.00038278 0.02511 -0.15324 -0.20995 -0.090758 -0.63396 -0.44921 -0.012438 0.029325 -0.2407 -0.57101 -0.19375 0.036934 0.063366 -0.43301 -0.18228 -0.44791 0.013911 0.066229 -0.46844 -0.066788 0.0055529 -0.4794 0.0055529 -0.0095393 -0.05469 0.14206 0.067663 -0.18118 0.027919 -0.45458 0.0013868 -0.3217 0.044857 0.02511 0.029325 0.0097276 0.11991 0.073402 -0.2 0.061937 -0.50619 -0.046583 0.056228 0.12138 0.026863 -0.43518 0.060508 0.069095 0.14058 -0.13264 -0.58775 0.093621 0.034959 -0.097363 0.042458 -0.26673 -0.22231 0.044481 -0.41113 0.35545 Deletion Peak 28 - CN values 12p13.31 chr12:7857368-8224886(probes 139525:139539) chr12:7937856-8224886(probes 139534:139539) chr12:7653898-8836863(probes 139504:139574) 1.1734e-05 0.00057864 Actual Copy Change Given 0.016705 0.49839 -0.14554 0 -0.035721 -0.17181 0.57934 0.35545 -0.086784 0.037782 0.23303 1.4319 0 -0.15921 0.13612 -0.29945 0.53327 0.55089 -0.24192 -0.013815 0.04635 0.011861 -0.15195 0.046275 -0.047936 0.029325 -0.069875 0.0027745 0.026514 -0.026167 0.057653 -0.21861 0.033211 -0.72985 -0.093403 1.5357 -0.22231 0.012516 1.0844 -0.072151 0.27593 0.0069435 -0.5897 -0.057385 -0.2407 0.015308 0.0013868 0.0020867 0.019839 0.018103 0.013911 -0.058731 0.040609 0.22993 -0.02576 0.056228 0.067661 0.15397 0.22222 0.020903 -0.090758 -0.24348 -0.032401 -0.027535 0.31498 0.58112 -0.11835 -0.35168 -0.12875 -0.15452 0.071966 -0.35282 -0.11182 -0.52532 0.03637 -0.65183 -0.40451 0.011422 -0.070804 0.019503 -0.70675 1.1427 -0.0027707 0.13708 0.16445 -0.014486 -0.026167 -0.45993 0.012517 0.11697 0.018103 -0.21985 -0.08413 -0.1975 0.063366 -0.023429 0.023706 -0.46632 -0.12356 0.013911 0.013911 0.0097276 0.20993 0.054803 -0.032394 0.011121 0.039547 0.0083351 0.018103 0.0027745 0.023706 0.86791 0.083487 -0.33214 -0.049289 0.050534 -0.21119 -0.33388 0.12727 -0.091376 1.1427 -0.13523 Deletion Peak 29 - CN values 12p13.2 chr12:11144954-12232453(probes 139771:139815) chr12:11402139-11596606(probes 139777:139778) chr12:11144954-11949362(probes 139771:139804) 0.00020333 0.010977 Actual Copy Change Given 0.016705 0.49839 -0.14554 0 -0.21367 -0.13555 0.012516 0.41162 -1.1485 0.046275 -0.093403 1.4224 -0.40008 -0.20995 0.099248 0.058631 0.51403 1.4129 -0.20498 0.02511 -0.023429 0.011861 -0.069466 0.0048336 0.030732 0.029325 -0.40008 0.04764 0.026514 0.0089162 0.099433 -0.73073 -0.0017184 -0.72985 0.020966 0.79529 -0.45136 0.012516 1.0844 -0.037093 0.26891 0.038504 -0.5897 0.079159 -0.2407 0.015308 0.051956 0.045572 0.019839 0.018103 0.029325 0.049527 0.040609 0.22993 0.0041632 0.0013868 -0.14168 0.15397 -0.18496 0.020903 -0.24679 -0.28558 -0.057385 -0.027535 0.31498 0.58112 0.023706 -0.34366 0 -0.17234 0.022978 0.464 -0.095238 0.049681 -0.019314 -0.39897 -0.40451 0.011422 0.053379 0.019503 -0.70675 1.1427 -0.0027707 -0.7802 0.16445 -0.014486 0.0027745 0.29262 0.012517 0.11697 0.018103 0.061937 -0.29 -0.36646 0.027919 -0.01106 0.023706 0.054803 -0.12356 0.013911 0.013911 -0.045957 0.20993 0.054803 -0.032394 0.011121 0.039547 0.0083351 -0.025478 0.039195 0.023706 0.86791 -0.020687 -0.37437 0.03214 0.050534 -0.1358 -0.33388 0.12727 0.011297 1.1427 -0.13523 Deletion Peak 30 - CN values 12q24.11 chr12:111323829-111783681(probes 147501:147542) chr12:111333739-111376129(probes 147502:147505) chr12:109999659-123016541(probes 147368:148455) 9.0561e-05 0.048944 Actual Copy Change Given -0.25347 -1.2929 -0.089434 -1.2929 -0.36079 -0.10865 -0.058562 -0.11443 0.0041632 0.046275 -0.15452 -0.060076 0.17347 0.29899 -0.070804 0.16145 -0.042517 -0.1774 0.12432 0.02511 0.07053 0.011861 -0.020687 0.0048336 0.0069435 0.029325 0.0013868 -0.015191 0.0013868 0.0089162 0.099433 -0.22969 0.012181 -0.31704 -0.022058 -0.27571 -0.31821 -0.15962 -0.098682 -0.037093 0.19923 0.038504 0.0013868 -1.2929 -0.097363 -0.013815 0.14228 -0.31762 0.019839 0.013911 0.029325 0.0097276 0.040609 0.11844 0.0041632 -0.018092 0.019503 -0.29709 0.071966 0.020903 -0.022058 -0.31203 0.11328 -0.085457 -0.22969 0.50707 -0.050641 -0.024798 0 -0.45197 0.022978 -0.67131 -0.074811 -0.032452 -0.1529 0.28153 0.33755 0 0.034959 0.019503 -0.39786 -0.14682 0.011121 0.15045 -0.39007 0.22609 -0.056038 -0.32519 0.012517 -0.30768 0.018103 -0.35282 -0.37675 0.066229 -0.18999 -0.01106 0.0022103 0.016135 -0.2 -0.01106 0.013911 0 -0.58579 0.18859 -0.032394 0.011121 -0.38308 -0.034359 -0.051032 0.039195 -0.28287 -0.28049 0 -0.32519 0.03214 0.15099 0.03214 -0.28228 0.12727 0.011297 0.11931 -0.22434 Deletion Peak 31 - CN values 12q24.21 chr12:116280850-117002527(probes 147922:147962) chr12:116572493-116600973(probes 147945:147946) chr12:109999659-123016541(probes 147368:148455) 1.9469e-07 7.9926e-05 Actual Copy Change Given -0.25347 0.034959 -0.089434 -0.019314 -0.36079 -0.10865 -0.058562 -0.11443 0.0041632 0.046275 -0.15452 -0.060076 0.17347 0.29899 -0.070804 0.16145 0.060508 -1.2865 0.064797 0.02511 0.07053 0.011861 -0.020687 0.0048336 0.0069435 0.029325 0.0013868 -0.015191 0.0013868 0.0089162 0.099433 -0.22969 0.012181 -0.31704 -0.022058 -0.27571 -1.2929 -0.15962 -0.15707 -0.037093 0.19923 0.038504 0.0013868 -0.07881 -0.097363 -0.013815 0.14228 -0.0459 0.019839 0.013911 -0.86869 0.0097276 0.040609 0.11844 0.0041632 -0.018092 0.019503 -0.29709 -0.097363 -1.0267 -0.022058 -0.31203 0.11328 -0.085457 -0.37999 0.50707 -0.29945 -0.024798 0 -0.45197 0.022978 -0.43518 -0.074811 -0.032452 -0.1529 0.24233 -0.52879 0 -0.34481 0.019503 -0.39786 -0.14682 0.011121 0.15045 -0.39007 0.22609 -0.056038 -0.32519 0.012517 -0.30768 0.018103 -0.12226 -0.37675 -0.088109 -0.12875 -0.01106 0.0022103 0.016135 -0.2 -0.01106 0.013911 -1.028 -0.53235 0.18859 -0.032394 0.011121 -0.11411 -0.034359 -0.051032 0.039195 -0.28287 -0.28049 0 -0.32519 0.03214 0.15099 0.03214 -0.28228 0.12727 -0.019141 0.11931 -0.22434 Deletion Peak 32 - CN values 13q12.11 chr13:1-21720943(probes 149148:149250) chr13:1-20131472(probes 149148:149170) chr13:1-21751225(probes 149148:149255) 0.0021068 0.04294 Actual Copy Change Given -0.10395 -0.050641 0.13761 0.19771 0.34242 -0.38401 0.38171 -0.098682 -0.6368 -0.20995 -0.33098 -0.31471 0.0013868 -0.19249 -0.80252 -0.066788 -0.45458 -0.1698 -0.14039 -0.15324 0.17347 -0.037721 -0.18496 -0.016567 -0.66763 0.0013868 -0.026167 -0.0055375 0.021409 -0.0096806 0.095072 -0.0027707 -0.029229 0.095072 -0.030267 0.05908 -0.36193 0.27995 -0.76629 -0.46951 -0.37211 -0.013815 0.030732 -0.34136 -1.1468 -0.045228 -0.16853 -0.019995 -0.56382 -0.32519 -0.89809 -0.38895 -0.013815 -0.67407 -0.74212 -0.039801 0.013911 -0.42101 0.10089 -0.057385 -0.043873 0.03316 0.057653 -0.1698 0.39662 -0.59944 -0.66855 -0.26131 -0.092081 -0.29945 -0.30651 -0.13264 -0.028901 -0.35122 -0.081472 0.29899 -0.75857 -0.11415 -0.068127 -0.022058 -0.48953 -0.35852 0.04344 -0.11882 0.53678 -0.2739 -0.20249 0.33593 -0.074809 -0.020687 -0.020687 -0.48953 -0.45029 -0.15195 -0.074811 0.020903 -0.045228 -0.050641 -0.47056 0.14652 -0.19625 -0.01106 -0.44491 -0.13523 -0.076145 -0.019314 -0.37296 -0.21614 -0.013815 -0.032996 -0.23826 -0.25769 -0.12226 0.047694 -0.16853 -0.27691 -0.037082 -0.060758 -0.26853 -0.23811 0.22993 0.18253 Deletion Peak 33 - CN values 13q14.3 chr13:40343187-70682555(probes 150571:151979) chr13:52033406-52242054(probes 151339:151352) chr13:41134330-77526697(probes 150574:152523) 0.00015279 0.13182 Actual Copy Change Given -0.10395 -0.050641 0.073402 0.19771 0.34242 0.020083 -0.56704 -0.098682 -0.6368 -0.20995 -0.33098 -0.31471 0.0013868 -0.19249 -0.81491 1.0084 -0.056038 -0.1698 -0.066723 -0.15324 0.17347 -0.037721 -0.18496 -0.016567 -0.66763 0.0013868 -0.026167 -0.0055375 -0.042517 -0.0096806 0.095072 -0.0027707 -0.029229 -0.69595 -0.030267 0.16595 -0.29709 0.27995 -0.74124 -0.46951 -0.37211 -0.013815 0.030732 -0.34136 -0.33906 -0.045228 -0.16853 -0.019995 -0.23185 -0.32867 -0.66578 -0.38895 -0.013815 -0.77651 -0.74212 -0.039801 0.013911 -0.44383 -0.20498 -0.057385 -0.0096806 -0.0045365 0.057653 0.4777 -0.56604 -0.59944 -0.66855 -1.0421 -0.093403 -0.27988 -0.30651 -0.13264 -0.028901 -0.014642 -0.081472 -0.45565 -0.43843 0.066538 -0.40893 -0.022058 -0.48953 -0.35852 0.04344 -0.11882 -0.20995 -0.19489 -0.20249 1.3964 -0.074809 -0.020687 -0.020687 -0.48953 -0.038442 0.40161 -0.042517 0.020903 -0.045228 -0.050641 -0.47056 0.14652 -0.023429 -0.73073 0.61534 -0.13523 -0.076145 -0.019314 0.038134 -0.21614 -0.013815 -0.032996 -0.23826 -0.58872 -0.12226 -0.25285 -0.16853 -0.29 -0.037082 -0.060758 -0.26853 0.042203 -1.0124 0.18253 Deletion Peak 34 - CN values 13q21.32 chr13:31703605-110386848(probes 149980:155347) chr13:61956809-70281842(probes 151754:151945) chr13:41134330-77526697(probes 150574:152523) 0.00057864 0.15975 Actual Copy Change Given -0.076145 -0.050641 -0.11835 0.19771 0.34242 0.020083 -0.53794 -0.043873 -0.6368 -0.20995 -0.33098 -0.31471 0.034959 -0.19249 -0.77481 0.94037 -0.14168 -0.1698 -0.0055375 -0.11312 0.17347 -0.010328 2.3319 -0.016567 -0.66763 0.0013868 -0.026167 0.015308 -0.0096806 -0.0096806 0.11991 0.034959 0.0038297 -0.69595 -0.030267 0.16595 0.56507 0.33432 -0.74124 -0.46951 -0.37211 -0.013815 0.030732 -0.34136 0.67215 -0.045228 -0.070804 -0.019995 -0.23308 -0.32867 0.12727 -0.38895 0.026514 -0.61681 -0.74212 -0.013815 0.053379 -0.42865 -0.20498 -0.032996 0.0055529 0.052986 0.057653 -0.67775 -0.55106 -0.58775 -0.66855 -0.22355 -0.093403 -0.27988 -0.27452 -0.38112 -0.0069195 0.0061078 0.32141 -0.49057 -0.43843 0.066538 -0.40893 0.012516 -0.48953 -0.35852 0.04344 -0.11882 -0.20995 -0.19489 -0.20249 0.21453 -0.074809 -0.33791 -0.020687 -0.48953 -0.038442 0.40161 -0.0055375 0.020903 -0.050641 -0.019314 -0.43843 -0.11965 -0.023429 -0.53997 0.61534 -0.093403 -0.015191 0.0069435 0.038134 -0.21614 0.020903 -0.032996 -0.23826 -0.44275 -1.2929 -0.23582 -0.16853 -0.29 -0.037082 -0.017264 -0.26492 0.042203 -0.98955 0.24233 Deletion Peak 35 - CN values 14q31.3 chr14:52734136-104559790(probes 157518:162214) chr14:73508063-103338279(probes 159429:162084) chr14:67849267-77361918(probes 158901:159799) 0.023754 0.023828 Actual Copy Change Given -0.30886 -0.099999 -0.12875 -0.22108 0.061937 -0.22057 -0.05469 -0.48008 0.0041632 0.0013868 -0.35168 0.0027745 0.018103 -0.16345 -0.069466 -0.39007 -0.23337 -0.16472 0.77022 -0.11574 0.13909 0.032888 -0.039801 0.039195 0.060508 0.0069435 0.11991 -0.41773 0.022304 0 0.15547 0.086377 -0.046908 -0.73161 0.033549 -0.26853 -0.36079 -0.12095 -0.71657 0.10525 -0.3642 -0.037082 -0.048619 -0.015191 0.18253 0.027919 0.027919 -0.0020722 0.015643 -0.34366 -0.77736 -0.21119 -0.15579 -0.27929 -0.022058 0.012516 0.0097276 -0.44383 0.0027745 0.026514 -0.14939 -0.16634 -0.081472 -0.3755 -0.23582 -0.38672 -0.0055375 0.13761 0 -0.017941 -0.0027707 0.74871 -0.25285 -0.047396 0.083487 -0.24557 -0.081472 0.031036 0 -0.027535 0.095072 0.56507 0 -0.29397 -0.080141 -0.14745 -0.17866 -0.31587 -0.017939 -0.23337 -0.080141 -0.017941 -0.18622 -0.47797 -0.01106 -0.01106 -0.062764 -0.027535 0.12579 -0.056038 0.013911 0.022304 0.10235 -0.24922 -0.13393 -0.20747 -0.046744 0.21453 -0.076418 -0.0041546 -0.248 -0.20747 0.1155 0.033549 -0.0041546 -0.11443 0.033549 -0.045916 -0.25648 -0.028729 -0.43301 0.2084 Deletion Peak 36 - CN values 15q11.2 chr15:25342050-25543337(probes 162426:162439) chr15:25213133-25682042(probes 162411:162453) chr15:1-32964427(probes 162330:162691) 4.5518e-46 1.3215e-27 Actual Copy Change Given -0.31587 -1.2929 -1.2929 -1.2929 -0.40782 0 -0.1609 -1.1485 -1.2929 -0.12356 -1.2929 -0.25043 -0.12875 -0.037082 -0.17234 -0.026167 0.33432 -0.11051 -0.13005 -0.030267 -0.20622 -0.025441 -1.2929 -0.0027707 -1.2929 -0.068127 -0.066788 -0.0096806 -1.2929 -1.2251 -0.015191 -0.73169 -0.14713 -0.736 -1.1978 -0.16345 -0.33791 -0.050641 0.61172 0.058116 -0.17107 -0.031632 -0.11051 -1.2929 -0.22601 -0.13264 -0.24922 -0.049959 -0.063784 -0.73424 -0.089434 -1.1713 -0.18244 -0.35168 -0.1083 -0.085457 -0.50619 -0.16472 -0.050641 -0.34136 -0.35965 -0.33823 -0.034359 -0.17992 -0.070804 -0.17234 -1.1695 -1.2634 -1.0131 -0.36193 -0.068127 -0.56406 -0.16726 -0.25479 -0.01106 -0.11312 -0.57989 -0.031337 -1.1313 -0.23214 -0.056038 0.046275 -0.83446 -0.10179 -0.34251 -1.22 -0.22355 -0.18748 -0.22108 -0.14726 -0.041159 -0.035721 -1.2785 -0.64029 -0.050641 -0.11182 -0.053341 -0.020687 -0.47374 0.0055529 -0.038442 -0.0069195 -0.24922 -0.54502 -0.21243 0.019503 0.0058987 -0.16472 -0.089597 -0.22231 -1.2225 0.25636 -1.2176 -1.1426 -0.15838 -1.2929 -1.2929 -1.1201 -0.2781 -1.0558 -0.34824 -0.26131 Deletion Peak 37 - CN values 15q12 chr15:27044063-27233912(probes 162511:162523) chr15:27052800-27214000(probes 162512:162522) chr15:1-32964427(probes 162330:162691) 8.1146e-55 7.7715e-30 Actual Copy Change Given -0.31587 0.0083351 0.080601 -0.28525 -0.45351 0 -0.1609 -0.43097 -0.017941 -0.12356 -0.36986 -0.25043 -0.15707 -0.13135 -0.17234 -0.026167 0.23303 -0.17234 -0.041159 -0.030267 -0.20622 -0.025441 -0.017941 -0.0027707 0.018103 -0.068127 -0.066788 -0.0096806 0.011121 0.0097276 -0.015191 -0.73169 -0.14713 -0.736 0.029325 -0.11574 -0.32403 -0.050641 -0.62159 0.058116 -0.17107 -0.031632 -0.11051 -0.55907 -0.22601 -0.13264 -0.24922 -0.049959 -0.063784 -0.36759 -0.089434 0.0013868 -0.18244 -0.35168 -0.1083 -0.085457 -0.61968 -0.16472 -0.050641 -0.34136 -0.35965 -0.33823 -0.034359 -0.17992 -0.070804 -0.17234 -0.037082 -0.22108 0.16595 -0.36193 -0.068127 -0.56406 -0.16726 -0.13212 0.0069435 -0.11312 -0.57989 -0.031337 -0.0096806 -0.23214 -0.056038 0.046275 -0.034359 -0.10179 -0.34251 -0.15258 -0.22355 -0.18748 -0.11704 -0.14726 -0.041159 -0.035721 -0.10395 -0.64029 -0.050641 -0.11182 -0.053341 -0.020687 -0.47374 0.0055529 -0.038442 -0.0069195 -0.24922 -0.54804 -0.128 0.019503 0.0058987 0.012516 -0.089597 -0.019314 -0.34366 -0.23826 -0.11965 0 -0.15838 0.11404 0.0097276 -0.025493 -0.2781 0.28489 -0.34824 -0.12616 Deletion Peak 38 - CN values 16p13.12 chr16:11749102-30366810(probes 169562:170618) chr16:14707349-18830542(probes 169849:169854) chr16:14736942-18820928(probes 169852:169853) 0.1621 0.21594 Actual Copy Change Given 0.037782 -0.20498 -0.13005 -0.034359 0.46741 -0.13727 -0.10657 0.30857 -0.0041546 0.18859 0.13909 0.086377 0.14206 0.51814 -0.17613 -0.016567 -0.0013858 -0.32982 -0.41003 0.34404 1.338 0.18031 -0.0041546 0.093621 0.48975 0.097979 0.076279 0.018103 -0.039801 -0.0027707 -0.022058 0 -0.069787 0.034959 -0.022058 -0.25164 -0.43301 -0.30298 -0.20747 0.39328 0.914 0.0069435 0.97523 0.31017 -0.026167 -0.019314 0.0083351 -0.099335 -0.44788 -0.01682 -0.15324 0.14206 -0.013815 -0.053358 -0.0083005 0.1795 -0.06142 0.0027745 -0.024798 -0.015191 -0.25043 -0.16253 0.13909 -0.41553 0.16745 1.4943 -0.01106 -0.043873 0.16295 0.3408 -0.015191 -0.95681 0.056228 -0.12564 0.25168 -0.18622 0.21146 0.63393 0.13792 -0.10526 0.25949 1.5523 -0.062764 0.081525 -0.0013858 0.16222 0.083487 0.089272 0.96028 0.24389 0.19314 -0.1391 -0.29118 -0.11051 0.32947 0.089272 0.1495 -0.041159 -0.15624 0.2084 -0.065447 -0.068127 0.10089 0.037782 -0.069466 0.59548 -0.051656 0.07484 -0.12226 -0.056187 0.053379 -0.26131 -0.068127 -0.05469 0.019503 0.37257 0.41329 0.16669 0.086377 0.19334 -0.035721 0.18102 Deletion Peak 39 - CN values 16q11.2 chr16:46806531-46992839(probes 170785:170803) chr16:46815800-46876660(probes 170786:170790) chr16:46649963-47639712(probes 170766:170855) 2.9267e-06 0.014153 Actual Copy Change Given 0.060508 -0.20498 0.60991 0.049114 0.022304 -0.18444 -0.073476 0 -0.0041546 0.18859 0.13909 -0.065447 -0.38336 0.061937 -0.17613 -0.46312 0.064797 -0.18118 -0.016567 -0.17866 1.1558 -0.10062 -0.0013858 -0.7219 -0.31471 -0.54199 0.076279 0.018103 -0.60138 -0.01106 -0.32867 0 -0.37351 -0.69595 -0.022058 -0.26973 -0.042517 -0.10395 -0.67775 -0.12487 -0.41663 -0.16853 -0.6509 -0.60719 0 0.018103 -0.38336 -0.099335 -0.13103 -0.023429 -0.15324 -0.39118 -0.057385 -0.024798 -0.72809 -0.42429 -0.95464 -0.10788 0.018103 -0.31237 -0.16217 -0.12392 -0.1975 -0.38336 -0.4958 -0.56902 -0.69233 0.36362 0.046275 -0.028901 -0.024798 -0.80726 0.023706 -0.55867 0.21914 -0.40451 -0.47162 1.8164 0.16445 0.030732 -0.44383 1.4248 -0.062764 0.12085 -0.25406 0.12507 -0.05469 0.0014669 -0.16217 -0.20249 -0.51342 -0.46419 -0.21985 0.30857 -0.77821 -0.38448 0.72641 -0.32054 0.042024 0.46229 -0.4695 -0.068127 0.0041632 -0.26011 0.0027745 0.43146 -0.47981 0.2084 -0.0027707 0.042024 2.2251 -0.20747 -0.11051 -0.05469 0.019503 0.37257 0.41329 0.16669 -0.30651 -0.38881 -0.40562 0.24233 Deletion Peak 40 - CN values 16q22.1 chr16:67002965-67144110(probes 172014:172025) chr16:67040290-67063738(probes 172018:172019) chr16:50826563-90354753(probes 171095:173635) 5.3502e-23 6.4928e-22 Actual Copy Change Given 0.060508 0.063366 0.51054 -0.0083005 0.022304 0.045445 -0.073476 0.044857 -0.6434 -0.20622 0.35545 0.19466 -0.38336 -0.90722 -0.98463 -0.36079 -0.14039 -0.18118 -0.016567 -0.17866 -0.31237 -0.10062 0.07053 -0.7219 -0.65836 -0.54199 0.076279 0.018103 -0.53794 -0.46525 -0.32867 0 -0.37351 -0.69595 -0.41553 -1.1934 -0.042517 -0.10395 -0.67775 -0.12487 -0.41663 -0.16853 -0.6509 -0.60719 -0.047936 -0.44706 -0.38336 -0.099335 -0.21832 -0.42865 -0.80418 -0.39118 -1.2929 -0.41992 -0.72809 -0.42429 -0.8401 -0.097988 0.018103 -0.10788 -0.16217 -0.12392 -0.1975 -0.41663 0.2548 -0.56902 -0.75167 0.36362 0.046275 -1.1849 -0.96114 -0.79325 0.10235 -0.55867 0.21914 -0.40451 -0.47374 -0.49766 -1.2546 0.030732 -0.44383 -0.21243 -0.062764 0.12085 -0.25406 0.12507 -0.10132 -0.34824 -1.2929 -0.22846 -0.51342 -0.46419 -0.21985 -0.39786 -0.77821 -0.38448 -0.34481 -0.32054 0.042024 -0.48533 -0.4695 -0.068127 -0.95609 -0.26011 0.0027745 -0.41443 -1.2929 0.2084 -0.0027707 0.042024 -1.2929 -0.20747 0.0041632 -0.26492 0.14206 -0.23544 -0.26612 -0.26794 -0.22478 -0.46331 0.19466 0.24233 Deletion Peak 41 - CN values 17p13.1 chr17:10101617-11502159(probes 174443:174548) chr17:10186888-10302755(probes 174452:174458) chr17:1-16881001(probes 173636:174839) 2.6957e-09 2.6957e-09 Actual Copy Change Given 0.15846 -0.056038 0.53327 -0.25648 -0.38895 -0.19948 -0.08413 -0.37999 -0.031632 -0.23074 0.0055529 -0.29591 -0.50048 0.65185 -0.18873 -0.43951 -0.44706 -0.49162 0.077718 -0.195 -0.15835 0 -0.019314 -0.024798 -0.01106 -0.52369 -0.035721 -0.45672 -0.064106 -0.51753 -0.19375 -0.041159 -0.40919 -0.75943 -0.56306 -0.67407 -0.32751 -0.76629 -0.77821 -0.63397 -0.47268 -0.20747 -0.64057 -0.057385 -0.32054 -0.67131 -0.34021 -0.1577 -0.27543 -0.40672 -0.87338 -0.42782 -0.35282 -0.039801 -0.047936 -0.06142 -0.042517 -0.47374 -0.23704 -0.29236 -0.46738 -0.23248 -0.22108 -0.18748 -0.30886 0.95263 -0.12095 -0.25769 -0.10788 -0.44275 -0.35977 -0.25406 -0.26492 -0.18572 -0.36306 -0.59068 -0.57496 -0.097079 -0.54804 -0.042517 -0.50722 -0.38448 -0.024798 0.16391 -0.37437 -0.20807 -0.28228 -0.75685 -0.10394 -0.3551 -0.10526 -0.60332 0.0013868 -0.52369 -0.08413 -0.090758 0.0097276 -0.36079 -0.027535 -0.15324 -0.32982 -0.081472 -0.44275 -0.31354 -0.17992 -0.55907 -0.14136 -0.3551 -0.17107 -0.01106 -0.84811 0 -0.086784 -0.45886 -0.26612 -0.30886 -0.013815 -0.37719 -0.31354 -0.089267 -0.4034 -0.22231 Deletion Peak 42 - CN values 17q21.2 chr17:39140303-45286757(probes 176118:176562) chr17:39503139-39777017(probes 176142:176166) chr17:39193622-45295919(probes 176124:176563) 0.0017976 0.0018162 Actual Copy Change Given -0.037082 -0.47268 -0.51651 -0.31237 -0.32982 -0.19448 -0.08413 -0.74734 0.48113 0.12874 -0.30416 -0.35852 0.2958 -0.10132 -0.13393 0.01944 -0.18999 -0.1391 -0.14682 0.11991 0.41999 0 0.73397 -0.024798 -0.043873 0.15397 -0.074811 0.0055529 -0.023429 -0.59458 -0.16217 -0.012438 1.7967 0.034959 -0.62636 -0.32519 0.083487 -0.52981 -0.71657 0.31497 0.18102 -0.21119 -0.12875 0.82843 0.26106 1.4295 0.50012 -0.1577 -0.0038224 0.50012 -0.22108 -0.46206 -0.0055375 -0.71657 -0.047936 -0.06142 -0.042517 -0.47374 -0.23704 -0.29236 -0.41663 0.040219 0.10818 0.013044 -0.30886 0.95263 -0.12226 -0.62541 -0.1736 -0.38783 -0.29945 0.29262 -0.23214 -0.12185 -0.32982 -0.11835 0.24233 -0.099715 -0.099999 -0.042517 -0.13652 0.31017 -0.024798 0.16391 0.57041 -0.25586 -0.22601 -0.63017 -0.10394 -0.25406 -0.10526 -0.12486 -0.039801 -0.21367 -0.08413 -0.090758 0.0097276 -0.36079 -0.60815 0.0069435 -0.0041546 -0.034295 -0.44814 -0.023429 -0.13652 -0.015191 -0.14136 -0.2589 -0.11383 -0.058731 0.20993 0.12727 -0.086784 -0.42757 -0.26612 -0.4232 -0.013815 0.20609 0.54206 -0.089267 -0.43518 0.22222 Deletion Peak 43 - CN values 18p11.31 chr18:2893532-5145656(probes 179073:179275) chr18:2960747-3438095(probes 179086:179119) chr18:2982718-3087094(probes 179087:179088) 0.19624 0.19648 Actual Copy Change Given 0.54559 -0.1774 0.35381 -0.63017 -0.24314 -0.025599 -0.052816 0.27048 -0.019314 -0.1609 -0.056038 -0.17487 -0.057385 1.1711 -0.040435 -0.45779 -0.38112 0.65737 0.68143 -0.092081 -0.10657 -0.045865 -0.097363 -0.050641 -1.0747 -0.035721 -0.081472 -0.47162 -0.094724 -0.58382 -0.077478 -0.017941 -0.053665 -0.67591 -0.11965 0.90593 -0.61393 -0.58872 0.61172 -0.41444 0.25168 -0.035721 -0.14939 -0.82635 -0.086784 -0.08413 -0.19375 -0.070129 -0.11673 0.02511 0 -0.023429 -0.3642 0.063366 -0.10657 0.21991 -0.11835 -0.046583 -0.14554 -0.066122 -0.15067 -0.32667 -0.16726 -0.14425 -0.30768 0.95672 -0.045228 0.064797 -0.057385 -0.6887 -0.34021 0.027919 -0.0069195 -0.25237 -0.31237 0.22068 0.23457 -0.066498 -0.099807 -0.073476 0.16745 -0.19375 0.03637 -0.059214 -0.26131 -0.22784 -0.0041546 -0.16726 -0.086782 -0.0041546 -0.080141 -0.2407 0.061937 -0.16345 -0.12746 -0.046583 -0.035721 -0.44059 0.071966 -0.06142 -0.20622 -0.058731 -0.47268 -0.099999 -0.15835 -0.07214 -0.091752 -0.47902 -0.068127 -0.076145 1.0356 0.030732 -0.17107 -0.43409 -0.16472 -0.37662 -0.10132 -0.36477 -0.31587 -0.086616 -0.54199 0.20993 Deletion Peak 44 - CN values 18q21.33 chr18:59559987-59994420(probes 182975:183024) chr18:59824992-59984546(probes 183008:183023) chr18:59895686-59925305(probes 183016:183017) 0.015094 0.015349 Actual Copy Change Given -0.41223 -0.14039 -0.2589 -0.21367 -0.24314 -0.025599 0.80889 0.22684 -0.70316 -0.1609 -0.056038 -0.18118 -0.057385 -0.21614 -0.040435 -0.45779 0.11991 -0.34824 -0.33445 -0.092081 -0.10657 -0.045865 -0.12875 -0.050641 -0.70226 -0.0041546 -0.10967 -0.46844 -0.1092 -0.55407 -0.077478 -0.017941 -0.053665 0.69634 -0.11965 0.13613 -0.35738 -0.38336 1.1789 -0.41444 0.30058 -0.035721 -0.043873 -0.3642 -0.44921 -0.08413 -0.19375 -0.070129 -0.047612 0.50012 0 0.23303 -0.3642 0.17658 -0.10657 0.21991 0.0019654 0.20687 -0.14554 -0.066122 -0.26492 -0.32667 -0.16853 -0.14425 -0.30768 0.94556 -0.037715 -0.26252 -0.057385 -0.057385 -0.29473 -0.13393 -0.13652 -0.078279 -0.43696 -0.3856 0.23457 -0.066498 -0.074811 -0.073476 -0.46738 0.25012 -0.030267 -0.032122 -0.23092 -0.26791 0.0041632 -0.2781 -0.086782 -0.0041546 -0.080141 -0.52777 0.15447 0.027919 -0.74994 0.0069435 -0.035721 -0.44059 0.071966 -0.20498 -0.24687 -0.0027707 0.66475 -0.55206 -0.12875 -0.07214 -0.091752 -0.3642 -0.068127 -0.076145 -0.12356 -0.27691 -0.17107 -0.39564 -0.15579 -0.21861 -0.080141 -0.36477 -0.31587 -0.012264 -0.48743 0.097979 Deletion Peak 45 - CN values 19p13.3 chr19:1-3366920(probes 184050:184312) chr19:1-1881317(probes 184050:184175) chr19:1-4957618(probes 184050:184448) 0.00055785 0.19648 Actual Copy Change Given -0.038442 -0.075027 -0.17866 -0.070804 -0.35396 -0.18192 -0.49788 -0.45565 -0.12486 -0.23214 -0.40451 -0.13523 -0.060076 -0.15579 -0.23704 -0.46525 -0.3356 -0.14682 0 -0.020687 -0.16599 0.010467 -0.13135 -0.065447 -0.3755 0.077718 -0.030267 0.011121 -0.081472 -0.062764 0.0083351 0.51751 -0.038768 0.22684 -0.14297 -0.29709 -0.24314 -0.24557 -0.67039 -0.11966 -0.20374 0.053379 0.25949 -0.81409 0.030732 -0.0041546 -0.031632 -0.22907 -0.22817 0.0055529 -0.3642 -0.39897 -0.30651 -0.84751 -0.039801 -0.07881 -0.077478 -0.45993 0.011121 -0.0013858 -0.32493 -0.33707 -0.027535 0.14058 0.04344 -0.19875 -0.17942 -0.24192 0.097979 -0.094724 -0.053341 0.30378 -0.21614 -0.24022 0.10672 -0.50308 0.48285 0.026817 -0.21491 -0.058731 -0.47056 -0.18496 0.018103 -0.10047 -0.2589 0.13689 0.13909 -0.43518 -0.12225 -0.22846 -0.17107 -0.15579 -0.095175 -0.24557 -0.10164 -0.06142 -0.069466 -0.074811 -0.013815 -0.10395 -0.12095 -0.061767 -0.25527 -0.23582 0.0027745 -0.28525 -0.23551 -0.42974 -0.14967 0.013911 0.31659 -0.34136 -0.21119 -0.46312 0.03214 -0.22969 -0.037082 0.14725 -0.27929 -0.12079 -0.47706 0.022304 Deletion Peak 46 - CN values 19p13.2 chr19:8940927-9214221(probes 184800:184822) chr19:8950216-9214221(probes 184801:184822) chr19:8987374-9067462(probes 184805:184818) 1.3832e-18 8.8797e-14 Actual Copy Change Given -0.038442 -0.060076 0.52275 -0.070804 -0.35396 0.041196 -0.053341 -0.45565 -1.0817 -0.23214 -0.017941 -0.13523 -0.060076 -0.15579 -0.23704 -0.012438 -0.3356 -0.21491 -0.25406 -0.020687 -0.16345 0.010467 -0.89657 -0.065447 -0.039801 0.077718 -0.030267 0.011121 -0.081472 -1.0868 0.0083351 0.51751 -0.038768 0.011157 -1.0172 0.25324 0.14355 -0.24557 1.2288 -0.11966 -0.88116 0.053379 -0.28168 1.2671 -0.33098 -0.0041546 -0.031632 -0.96939 -0.22817 0.71886 -0.3642 -0.44167 -0.30651 -0.48008 -0.039801 -0.07881 -0.077478 -0.073476 0.011121 -0.0013858 -0.12486 -0.28439 -0.027535 0.092753 0.13909 -0.19875 -0.17942 -0.30534 -0.60332 -0.094724 -0.053341 -0.19124 0.042024 -0.17942 0.10672 -0.57135 0.45207 -0.14351 -0.21491 -0.058731 0.39828 -1.0689 -0.50204 -0.14505 -0.56306 -0.7 -0.043812 -0.057886 -0.12225 -0.20374 -0.12746 -0.1698 -0.25769 -0.23214 -0.10164 -0.17089 -0.020687 0.067661 -0.013815 0.15995 -0.13781 -0.061767 -0.25527 -0.23582 0.0027745 -0.28525 -0.9781 -0.42974 -0.14967 0.013911 0.084932 0.63902 -0.13005 0.011121 0.10089 -0.11182 -0.037082 0.14725 -0.27929 -0.50191 0.10526 0.022304 Deletion Peak 47 - CN values 19p13.2 chr19:11836080-12126569(probes 185096:185107) chr19:11891779-12019592(probes 185097:185099) chr19:11908878-12029406(probes 185099:185100) 6.055e-07 0.019426 Actual Copy Change Given -0.038442 -0.060076 0.55266 -0.070804 -0.35396 0.041196 -0.053341 -0.45565 -0.11574 0.12727 -0.017941 -0.13523 -0.0083005 1.3566 -0.23704 -0.012438 -0.3356 0.94854 -0.31003 -0.020687 -0.16345 0.010467 -0.045228 -0.065447 -0.039801 0.077718 -0.030267 0.011121 -0.081472 -0.07881 0.02511 0.51751 -0.038768 0.011157 -0.18622 0.56507 0.14355 -0.24557 0.95058 -0.11966 -0.18873 0.053379 -0.28168 1.7764 -0.18748 -0.0041546 -0.031632 -0.25486 -0.22817 0.28786 -0.3642 -0.024798 -0.30651 -0.48008 -0.039801 -0.07881 -0.077478 -0.073476 0.011121 -0.0013858 -0.031632 -0.12001 -0.0096806 0.092753 0.13909 -0.19875 -0.17942 -0.30534 0.039195 -0.094724 -0.053341 -0.19124 0.042024 -0.17942 0.10672 -0.57135 0.45207 -0.14351 -0.21491 -0.058731 0.41162 -0.42429 -0.028377 -0.14505 -0.64528 0.1236 -0.043812 -0.0096806 -0.12225 -0.20374 -0.12746 -0.1698 -0.34481 -0.23214 -0.10164 -0.15324 -0.020687 0.067661 -0.013815 0.15995 -0.13781 -0.061767 -0.25527 -0.23582 0.0027745 -0.28525 -0.24405 -0.42974 -0.14967 0.013911 0.084932 0.69821 -0.13005 0.011121 0.10089 -0.11182 -0.037082 0.14725 -0.27929 -0.13636 0.10526 0.022304 Deletion Peak 48 - CN values 19p12 chr19:19788737-23494464(probes 185856:186010) chr19:19937181-21261723(probes 185863:185864) chr19:19805884-33687659(probes 185858:186376) 5.8793e-13 9.0561e-05 Actual Copy Change Given -0.038442 -0.053341 0.40994 -0.062764 -0.43843 -0.018745 0.59728 -0.74299 -0.71212 -0.0096806 0.1155 0.1038 -0.0083005 0.69073 -0.23704 -0.012438 -0.30886 0.35545 -0.61201 -0.020687 -0.16345 0.010467 -0.3112 -0.065447 -0.097363 0.077718 -0.030267 -0.53591 -0.081472 -0.73687 0.02511 0.51751 -0.038768 0.011157 -0.75599 0.21146 0.14355 -0.20622 0.02292 -0.11966 -0.18873 0.053379 -0.19875 -0.78581 0.16745 -0.0041546 -0.031632 -0.25486 -0.60212 -0.051991 -0.3642 0.0083351 -0.30651 -0.48008 -0.039801 -0.07881 -0.077478 -0.073476 0.12432 -0.0013858 -0.31821 -0.8102 -0.01106 0.092753 0.13909 -0.19875 -0.1736 -0.29236 0.039195 -0.094724 -0.053341 -0.89043 0.042024 -0.14503 0.10672 -0.36759 -0.34824 -0.12847 -0.19249 -0.058731 -0.21119 -0.7482 -0.028377 -0.14505 -0.44275 -0.18557 -0.08413 -0.40451 -0.12225 -0.20374 -0.39007 -0.15707 -0.90798 -0.55206 -0.10164 -0.15324 -0.020687 -0.43843 -0.013815 0.11991 -0.13781 -0.061767 0.12579 -0.19375 0.0027745 -0.28525 -0.73665 -0.38448 -0.14967 -0.26973 -0.33906 -0.043873 0.030732 -0.12746 0.10089 -0.098682 0.012516 0.14725 -0.27929 -0.13636 0.10526 0.022304 Deletion Peak 49 - CN values 19q13.11 chr19:33445752-33635793(probes 186351:186370) chr19:33553676-33635793(probes 186362:186370) chr19:19805884-33687659(probes 185858:186376) 1.9087e-69 2.9314e-53 Actual Copy Change Given -0.038442 -0.077478 1.3265 -0.039801 0.20534 -0.16676 0.86394 0.805 -0.024798 -0.0096806 1.0866 0.15846 -0.0083005 -0.12486 -0.076145 -0.012438 0.24233 0.36199 0.066229 0.012516 -0.074571 -0.014461 1.9177 -0.056038 0.0083351 0.077718 -0.030267 -0.0027707 1.061 0.011121 0.13022 0.58471 -0.003103 0.66583 -0.04428 1.7555 0.14355 -0.20622 -0.51239 0.019491 -0.18873 0.13317 -0.19875 -0.7456 0.16745 -0.0041546 -0.031632 -0.20186 -0.013484 -0.051991 -0.3642 0.0083351 -0.086784 -0.046583 -0.039801 -0.042517 -0.077478 -0.073476 0.91602 0.039195 -0.16599 -0.27245 -0.01106 0.092753 0.13909 -0.19875 -0.1736 -0.29236 0.039195 -0.3551 -0.053341 -0.16726 0.1038 -0.14503 0.10672 -0.094724 -0.34824 -0.12847 -0.41663 0.056228 0.081958 -0.86869 -0.028377 -0.14505 0.004487 -0.18557 -0.070804 -0.48743 -0.12225 -0.10657 -0.39007 -0.052189 0.22222 -0.54703 -0.10164 -0.15324 0.013911 0.016705 -0.013815 0.11991 -0.047936 -0.061767 0.082043 -0.077478 0.0027745 -0.22355 -0.10899 0.057653 -0.14967 -0.26973 0.13613 -0.043873 0.88586 0.0069435 0.10089 -0.076145 -0.026167 0.14725 -0.098682 -0.13636 -0.40451 -0.15324 Deletion Peak 50 - CN values 19q13.2 chr19:40513357-40704370(probes 187057:187067) chr19:40522704-40704370(probes 187058:187067) chr19:40541399-40710461(probes 187060:187068) 0.0001329 0.08149 Actual Copy Change Given -0.022058 -0.077478 -0.13135 -0.039801 0.10526 0.86079 1.1362 3.6569 -0.024798 -0.0096806 2.4414 0.35545 -0.0083005 -0.12486 -0.14554 -0.012438 0.24233 -0.027161 0.23923 -0.068127 -0.043873 -0.014461 1.9177 -0.056038 0.0083351 0.053379 -0.030267 -0.0027707 1.061 0.011121 0.023706 0.58471 -0.003103 0.67957 -0.04428 1.1037 -0.23772 -0.12751 -0.67775 0.13316 -0.14297 0.048349 -1.1973 -0.13264 0.04344 -0.53083 -0.031632 -0.20186 -0.013484 -0.035721 -0.21062 0.0083351 -0.046583 -0.046583 -0.039801 -0.06142 -0.077478 -0.073476 1.3404 0.039195 -0.15707 -0.27245 -0.017306 0.092753 0.26385 -0.15452 0.027919 -0.14554 -0.034359 -0.39908 -0.042517 -0.16726 0.056028 -1.1477 0.09217 -0.088109 -0.10657 -0.05844 -0.07744 0.056228 0.096525 -0.66485 -0.0069195 -0.14505 0.066229 -0.18557 -0.26011 -0.46844 -0.12225 -0.10657 -0.074811 -0.052189 0.247 -0.11965 -0.0041546 -0.097363 0.013911 0.016705 0.084932 0.70945 -0.047936 0.065323 0.21453 0.011121 0.0027745 -0.22355 -0.10899 0.40161 -0.14967 0.034625 0.037782 -1.076 0.88586 0.0069435 0.10089 -0.31237 -0.026167 -1.1483 -0.098682 -0.956 -0.40451 -0.15207 Deletion Peak 51 - CN values 19q13.42 chr19:53885534-54385653(probes 188179:188182) chr19:54022038-54385653(probes 188181:188182) chr19:52659460-55677501(probes 188123:188284) 1.5188e-12 2.9854e-09 Actual Copy Change Given -0.10788 -0.44059 0.35218 -0.35053 0.0055529 0.1531 0.15397 1.5284 -0.12226 -0.0096806 -0.29355 0.27048 0.063366 0.247 -0.79503 -0.012438 -0.21861 0.12138 -0.026167 -0.10657 -0.22355 -0.014461 -0.284 -0.056038 -0.3217 0.053379 -0.030267 -0.0027707 0.78176 -0.1736 -0.34595 0.46913 -0.027863 -0.14939 -0.33791 -0.27212 -0.47586 -0.91176 -0.75426 -0.31588 -0.25164 0.048349 0.079159 -0.13264 -0.2 -0.060076 -0.066788 -0.26191 -0.013484 0.19771 -0.53794 0.0083351 -0.28168 -0.16599 -0.14801 -0.49684 -0.1092 0.31819 0.10672 0.039195 -0.29591 -0.36791 -0.032996 -0.34481 -0.064977 -0.51753 -0.2132 -0.6565 -0.034359 2.0587 -0.042517 -0.16726 -0.0013858 -0.28596 0.09217 -0.3471 -0.35965 -0.13882 -0.26853 -0.092081 0.077718 -1.0912 -0.065447 -0.12662 -0.13652 -0.053999 -0.26733 0.095072 -0.31587 -0.16345 -0.26131 -0.37999 -0.4281 -0.33329 -0.12875 -0.097363 -0.11965 0.016705 -0.046583 -0.14682 -0.17992 -0.092081 -0.0027707 -0.062764 -0.046583 -0.46206 -0.42074 0.099433 -0.22751 -0.15452 -0.081472 -0.31821 0.88586 0.073402 0.10089 0.77599 -0.026167 0.097241 -0.098682 -0.15051 -0.40451 -0.18999 Deletion Peak 52 - CN values 20p11.1 chr20:25834498-29900943(probes 190307:190334) chr20:25974471-29900943(probes 190320:190334) chr20:25984469-26114198(probes 190321:190322) 0.030003 0.029455 Actual Copy Change Given -1.19 -0.10788 0.53678 0.19619 0.86592 0.044028 -0.026167 0.27837 0.0055529 -1.145 0.030732 -0.19249 0.054803 -0.10132 -0.039801 0.073402 0.41664 -0.12486 0.27679 0.17046 0.31498 0.034297 -0.13135 0.053379 0.023706 0.064797 0.083487 0.073402 -0.01106 0.034959 0.37183 0.066229 0.0080009 -0.70226 0.023706 0.42503 -0.27929 0.13613 0 0.097967 -1.2929 -1.2929 -0.030267 0.034959 0.73777 0.064797 0.31498 -0.019995 0.019839 0.022304 -0.022058 -1.0421 0.056228 0.12727 0.71697 0.0069435 0.050534 0.029325 0.15995 0.034959 -0.028901 0.16704 0.14206 0.25168 -0.21367 0.77984 -0.058731 0.21299 0.15397 0.59908 0.042024 0.33593 0.071966 -0.024252 0.30537 0.30218 0.65737 -0.0080023 0.18253 0.0097276 0.17196 0.96288 0.0055529 0.29205 0.018103 0.12507 0.034959 0.34242 -0.0082987 0.25949 0.067661 -0.043873 0.27206 0.41999 0.020903 -0.01106 0.19162 0.02511 0.12432 0.26106 0.030732 0.012516 0.34404 0.27521 0.10235 0.36362 -0.0093374 -0.049289 -0.01106 0.03637 -0.22846 0.56507 0.56685 0 0.21453 0.011121 0.023706 -0.0034729 0.15995 -0.027362 0.59188 0.71886 Deletion Peak 53 - CN values 22q11.1 chr22:1-18264873(probes 195138:195212) chr22:1-17846828(probes 195138:195175) chr22:1-18075722(probes 195138:195192) 0.19624 0.19648 Actual Copy Change Given 0.089272 -0.0096806 0.73019 -0.068127 -0.22846 -0.11911 0.51577 -0.4023 0.65369 0.15397 0.09072 0.093621 -0.085457 -0.19625 -0.11574 0.064797 -0.15707 -0.051991 -0.10395 0.19162 -0.0027707 0.016049 0.0013868 -0.73687 0.022304 0.030732 0.071966 0.12138 -0.56206 -0.45136 -0.21243 -0.016567 -0.0030247 0.62989 -0.18622 -0.088109 0.29899 -0.29709 -1.2929 0.087812 -0.31471 0.060508 -0.67039 -0.013815 -0.34939 0.17387 -0.34021 0.077005 0.048035 -0.21614 -0.099999 0.076279 -0.3551 0.030732 0.057653 -0.062764 0 0.0083351 -0.10788 0.037782 -0.44491 -0.027912 -0.14039 -0.3551 -0.21985 0.31177 -0.080141 0.08495 -0.15452 -0.10788 -0.2407 -0.40451 -0.21738 0.024571 0.071966 -0.14425 -0.44814 -0.48301 -0.07214 0 -0.57496 0.03637 -0.053341 -0.23381 0.13761 -0.16152 0.029325 -0.30298 -0.49833 0.05355 -0.039801 -0.041159 -0.16345 -0.39564 0.03214 -0.24922 -0.28525 0.079159 0.027919 -0.17866 -0.14811 0.07053 -0.07214 -0.5897 -0.043873 -0.14939 -0.18087 0.043893 -0.0055691 0.087692 -0.037082 0.16445 -0.089434 0.037782 -0.069466 -0.062764 0.096525 -0.03505 -0.1083 -0.017179 -0.40446 0.72455