Archive:  /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/report_only_files.zip
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/del_qplot.fig  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/gene_stats.mat  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/D.cap1.5.mat  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/table_del.txt  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/regions_track.bed  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/orig_stats.mat  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/params.mat  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/segmented_data.mat  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/del_qplot.pdf  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/table_amp.txt  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/scores.gistic  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/focal_input.seg.txt  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/sample_cutoffs.txt  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/broad_data_by_genes.txt  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/freqarms_vs_ngenes.pdf  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/amp_qplot.fig  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/amp_qplot.pdf  
  inflating: /cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/f3dd464d-79fd-48b3-81a3-ed641311fe5a/copy_number_gistic2/b66ac4b3-51b2-4724-8311-445ea38bdee6/call-tool_gistic2/focal_data_by_genes.txt  
main
  adding: all_data_by_genes.txt (deflated 98%)
  adding: all_lesions.txt (deflated 72%)
  adding: all_thresholded.by_genes.txt (deflated 95%)
  adding: amp_genes.txt (deflated 68%)
  adding: amp_qplot.fig (deflated 77%)
  adding: amp_qplot.pdf (deflated 19%)
  adding: amp_qplot.png (deflated 9%)
  adding: arraylistfile.txt (deflated 74%)
  adding: broad_data_by_genes.txt (deflated 98%)
  adding: broad_significance_results.txt (deflated 59%)
  adding: broad_values_by_arm.txt (deflated 84%)
  adding: D.cap1.5.mat (deflated 5%)
  adding: dcc_archive_manifest.tsv (deflated 62%)
  adding: dcc_archive.properties (stored 0%)
  adding: del_genes.txt (deflated 70%)
  adding: del_qplot.fig (deflated 68%)
  adding: del_qplot.pdf (deflated 6%)
  adding: del_qplot.png (deflated 3%)
  adding: focal_data_by_genes.txt (deflated 98%)
  adding: focal_input.seg.txt (deflated 68%)
  adding: freqarms_vs_ngenes.pdf (deflated 33%)
  adding: gcs_delocalization.sh (deflated 77%)
  adding: gcs_localization.sh (deflated 85%)
  adding: gcs_transfer.sh (deflated 75%)
  adding: gene_stats.mat (deflated 5%)
  adding: hg19_GENCODE_v18_20140127.mat (deflated 95%)
  adding: nozzle.html (deflated 81%)
  adding: nozzle.RData (deflated 1%)
  adding: orig_stats.mat (deflated 17%)
  adding: params.mat (deflated 1%)
  adding: raw_copy_number.png (deflated 1%)
  adding: regions_track.bed (deflated 58%)
  adding: sample_cutoffs.txt (deflated 70%)
  adding: scores.gistic (deflated 71%)
  adding: script (deflated 77%)
  adding: segmented_data.mat (deflated 7%)
  adding: SNP6.merged.151117.hg19.CNV.txt (deflated 65%)
  adding: stderr (stored 0%)
  adding: stdout (deflated 87%)
  adding: table_amp.txt (deflated 55%)
  adding: table_del.txt (deflated 59%)
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.4602efd3/out.6
	zip warning: ignoring FIFO (Named Pipe) - use -FI to read: tmp.4602efd3/err.6
updating: del_qplot.fig (deflated 68%)
updating: del_genes.txt (deflated 70%)
updating: gene_stats.mat (deflated 5%)
updating: broad_values_by_arm.txt (deflated 84%)
updating: stdout