source '/cromwell_root/gcs_transfer.sh'




# Localize files from source bucket 'fc-secure-823808d0-5404-49c9-990f-b3d9e353e468' to container parent directory '/cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/87e93152-c62b-420d-8832-883ed21d1cc4/mutation_mutsig2cv_hg19/20396aa5-9704-4384-92d5-8f87909c9572/call-tool_mutsig2cv_hg19'.
files_to_localize_cc830aafc40b59aecc02506c4251a434=(
  "broad-firecloud-cptac"   # project to use if requester pays
  "3" # max transfer attempts
  "/cromwell_root/fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/87e93152-c62b-420d-8832-883ed21d1cc4/mutation_mutsig2cv_hg19/20396aa5-9704-4384-92d5-8f87909c9572/call-tool_mutsig2cv_hg19/" # container parent directory
  "gs://fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/87e93152-c62b-420d-8832-883ed21d1cc4/mutation_mutsig2cv_hg19/20396aa5-9704-4384-92d5-8f87909c9572/call-tool_mutsig2cv_hg19/BRCA-freeze-v5.final_analysis_set.maf"
)

localize_files "${files_to_localize_cc830aafc40b59aecc02506c4251a434[@]}"
       


# Localize files from source bucket 'fc-secure-823808d0-5404-49c9-990f-b3d9e353e468' to container parent directory '/cromwell_root'.
files_to_localize_b595aa4d900edd660f2ffcf1405f94c2=(
  "broad-firecloud-cptac"   # project to use if requester pays
  "3" # max transfer attempts
  "/cromwell_root/" # container parent directory
  "gs://fc-secure-823808d0-5404-49c9-990f-b3d9e353e468/299ca761-c175-4186-975c-c7bf0c1487fc/mutation_signature_analyzer_workflow/1a7a6192-5f67-4409-aee8-d7c47a33ecac/call-mutation_signature_analyzer/script"
)

localize_files "${files_to_localize_b595aa4d900edd660f2ffcf1405f94c2[@]}"
       



# Localize files from source bucket 'broad-institute-gdac' to container parent directory '/cromwell_root/broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome'.
files_to_localize_6c4e8a119f317d1f19b1807496ec0df7=(
  "broad-firecloud-cptac"   # project to use if requester pays
  "3" # max transfer attempts
  "/cromwell_root/broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/" # container parent directory
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr17.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr9.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr20.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chrY.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr21.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr13.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr12.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr19.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr11.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr3.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr7.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr15.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr14.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr22.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chrX.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr18.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr1.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr2.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr10.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr5.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr4.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr8.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr6.txt"
  "gs://broad-institute-gdac/reference/genome/GRCh37.d1.vd1__by_chromosome/chr16.txt"
)

localize_files "${files_to_localize_6c4e8a119f317d1f19b1807496ec0df7[@]}"
       