Unique Name Descriptor Wide Peak Limits Peak Limits Region Limits q values Residual q values after removing segments shared with higher peaks Broad or Focal Amplitude Threshold 11LU013_TP 11LU016_TP C3L-00093_TP C3L-00368_TP C3L-00510_TP C3L-00604_TP C3L-00893_TP C3L-01330_TP C3L-02219_TP C3N-00167_TP C3N-00199_TP C3N-00203_TP C3N-00223_TP C3N-00546_TP C3N-00550_TP C3N-00559_TP C3N-00574_TP C3N-00579_TP C3N-01021_TP C3N-01024_TP C3N-01413_TP C3N-01416_TP C3N-01799_TP C3N-02002_TP C3N-02067_TP C3N-02087_TP C3N-02145_TP C3N-02155_TP C3N-02158_TP C3N-02379_TP C3N-02380_TP C3N-02421_TP C3N-02424_TP C3N-02433_TP C3N-02529_TP C3N-02572_TP C3N-02582_TP C3N-02729_TP Amplification Peak 1 1q32.1 chr1:192140001-210790000(probes 15298:17119) chr1:198980001-199360000(probes 15942:15977) chr1:197050001-199460000(probes 15745:15990) 0.044469 0.044469 0: t<0.1; 1: 0.10.9 1 1 0 1 1 1 2 1 1 1 2 0 2 1 1 1 0 1 2 1 1 1 1 1 1 1 0 2 1 1 1 1 0 1 1 0 1 1 Amplification Peak 2 5p15.33 chr5:1020002-1310000(probes 76935:76938) chr5:1030001-1300000(probes 76936:76937) chr5:1-3420000(probes 76920:77099) 0.0041394 0.0041394 0: t<0.1; 1: 0.10.9 1 1 2 2 0 0 0 0 2 1 1 1 1 1 0 1 0 1 2 1 1 2 2 2 1 1 2 0 0 1 1 1 1 1 1 1 1 0 Amplification Peak 3 5q35.1 chr5:169550001-181380000(probes 92213:93240) chr5:172650001-172900000(probes 92500:92516) chr5:171880001-173360000(probes 92447:92563) 0.059783 0.059783 0: t<0.1; 1: 0.10.9 1 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 1 2 0 1 0 0 1 1 1 0 1 0 1 2 1 0 1 1 1 2 0 Amplification Peak 4 6p21.1 chr6:41530001-42000000(probes 96956:97008) chr6:41930001-41990000(probes 97000:97007) chr6:41590001-42010000(probes 96963:97010) 0.1476 0.1476 0: t<0.1; 1: 0.10.9 0 0 1 0 0 1 0 0 1 1 1 1 0 1 1 1 2 1 0 0 1 1 0 0 1 1 0 2 0 1 1 0 1 0 1 1 1 1 Amplification Peak 5 7p11.2 chr7:54430001-55769999(probes 113590:113731) chr7:54720001-55130000(probes 113619:113661) chr7:52070001-63680000(probes 113351:113849) 1.354e-05 1.4269e-05 0: t<0.1; 1: 0.10.9 2 1 1 0 0 1 0 1 2 2 2 1 0 1 2 2 2 1 0 0 1 1 0 1 1 1 1 2 0 2 1 1 1 1 1 1 2 1 Amplification Peak 6 7q11.21 chr7:65770001-65840000(probes 113959:113965) chr7:65780001-65830000(probes 113960:113964) chr7:65780001-65860000(probes 113960:113967) 0.056998 0.065107 0: t<0.1; 1: 0.10.9 1 1 1 0 0 1 0 1 1 1 1 1 0 1 1 2 2 1 0 0 1 0 1 1 1 1 1 0 0 2 0 1 1 1 1 1 1 1 Amplification Peak 7 8q24.21 chr8:128140001-128220000(probes 134019:134029) chr8:128160001-128200000(probes 134022:134026) chr8:91930001-145138636(probes 130227:135538) 3.7753e-09 4.6953e-09 0: t<0.1; 1: 0.10.9 2 1 0 0 0 1 2 2 0 0 0 2 2 1 0 1 2 1 1 2 1 1 2 1 1 0 0 1 0 2 1 1 1 1 2 0 2 1 Amplification Peak 8 8q24.3 chr8:144170002-145138636(probes 135531:135538) chr8:144180002-145138636(probes 135532:135538) chr8:91930001-145138636(probes 130227:135538) 0.00029234 0.069715 0: t<0.1; 1: 0.10.9 1 0 0 0 0 2 2 1 0 0 0 0 2 1 1 2 1 1 1 1 1 1 1 1 1 0 0 1 0 0 1 1 1 1 2 0 2 1 Amplification Peak 9 11q13.3 chr11:68860001-70350000(probes 163217:163370) chr11:68870001-69120000(probes 163218:163243) chr11:68870001-70190000(probes 163218:163353) 0.083912 0.083912 0: t<0.1; 1: 0.10.9 0 1 0 0 0 1 0 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 1 2 0 0 0 1 1 Amplification Peak 10 12p11.21 chr12:32300001-32639999(probes 172366:172403) chr12:32310001-32320000(probes 172367:172368) chr12:32310001-32349999(probes 172367:172371) 0.16574 0.16574 0: t<0.1; 1: 0.10.9 1 1 0 2 2 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 0 1 Amplification Peak 11 12q15 chr12:67130002-70860000(probes 175380:175797) chr12:69120001-69200000(probes 175615:175623) chr12:66430001-72259999(probes 175303:175937) 1.9704e-06 0.19654 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 0 1 0 2 2 0 0 0 2 0 1 0 0 0 1 2 1 0 1 0 Amplification Peak 12 12q15 chr12:69110002-69210000(probes 175614:175624) chr12:69120001-69200000(probes 175615:175623) chr12:66430001-72259999(probes 175303:175937) 1.9704e-06 0.0006131 0: t<0.1; 1: 0.10.9 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 0 1 0 2 2 0 0 0 2 0 1 0 0 0 1 2 1 0 1 0 Amplification Peak 13 14q13.3 chr14:35980002-37170000(probes 195654:195799) chr14:36610001-36630000(probes 195731:195733) chr14:33360001-39120000(probes 195392:196009) 8.1206e-08 0.086375 0: t<0.1; 1: 0.10.9 2 1 1 0 0 1 0 0 0 0 1 1 0 0 1 1 2 1 1 2 1 0 0 2 1 2 2 2 2 1 0 0 1 0 1 1 1 1 Amplification Peak 14 14q13.3 chr14:36600002-36640000(probes 195730:195734) chr14:36610001-36630000(probes 195731:195733) chr14:33360001-39120000(probes 195392:196009) 8.1206e-08 8.7269e-05 0: t<0.1; 1: 0.10.9 2 1 1 0 0 1 0 0 0 0 1 1 0 0 1 1 2 1 1 2 1 0 0 2 1 2 2 2 2 1 0 0 1 0 1 1 1 1 Amplification Peak 15 14q32.33 chr14:105520002-107043718(probes 202370:202388) chr14:105530002-107043718(probes 202371:202388) chr14:105530002-107043718(probes 202371:202388) 0.10086 0.11264 0: t<0.1; 1: 0.10.9 2 0 0 0 0 1 0 0 0 1 2 0 0 0 1 1 1 1 1 2 1 0 0 1 0 1 1 2 1 0 1 0 0 0 0 1 1 1 Amplification Peak 16 17q12 chr17:38700001-39870000(probes 220670:220791) chr17:39340001-39860000(probes 220739:220790) chr17:38710001-39890000(probes 220671:220793) 0.11728 0.11728 0: t<0.1; 1: 0.10.9 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 2 1 0 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 1 Amplification Peak 17 19q12 chr19:29020001-29880000(probes 233546:233644) chr19:29760001-29770000(probes 233628:233629) chr19:29030001-29900000(probes 233547:233646) 0.05747 0.05747 0: t<0.1; 1: 0.10.9 0 0 2 0 0 0 0 0 1 0 2 1 0 1 0 0 0 0 1 0 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 Amplification Peak 18 20q13.31 chr20:57230001-59040000(probes 241226:241432) chr20:57720001-57760000(probes 241285:241289) chr20:56580001-64444167(probes 241156:241928) 0.00021234 0.0068959 0: t<0.1; 1: 0.10.9 1 1 0 0 0 1 0 0 1 1 1 0 2 0 1 1 1 2 0 2 1 0 0 0 1 0 0 1 2 1 1 1 1 2 1 0 1 2 Amplification Peak 19 20q13.33 chr20:62820001-64444167(probes 241834:241928) chr20:63580001-64328833(probes 241915:241915) chr20:56580001-64444167(probes 241156:241928) 0.00026442 0.017225 0: t<0.1; 1: 0.10.9 1 1 0 0 1 1 0 0 1 1 1 0 2 0 1 1 1 2 0 1 1 0 0 0 1 0 0 2 2 1 1 1 0 2 0 0 1 2 Amplification Peak 20 21p12 chr21:6780001-6950000(probes 242653:242672) chr21:6810001-6940000(probes 242657:242671) chr21:6740001-6970000(probes 242648:242674) 0.069715 0.069715 0: t<0.1; 1: 0.10.9 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 2 0 2 Amplification Peak 21 Xq21.31 chrX:90320001-96379999(probes 257137:257458) chrX:91990001-92050000(probes 257187:257193) chrX:90330001-96399999(probes 257138:257460) 0.056998 0.095057 0: t<0.1; 1: 0.10.9 2 1 0 0 0 0 2 1 1 1 1 2 0 0 1 1 1 1 0 0 0 2 1 1 1 0 1 1 1 0 0 0 0 0 0 0 1 1 Amplification Peak 22 Xq27.3 chrX:108150001-156040895(probes 258577:262514) chrX:145760001-146020000(probes 261772:261798) chrX:144170001-153469999(probes 261624:262400) 0.0052183 0.031966 0: t<0.1; 1: 0.10.9 0 1 0 0 0 0 2 1 1 1 2 1 0 2 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 2 1 1 Amplification Peak 23 Yq11.223 chrY:20120001-20180000(probes 264640:264646) chrY:20130001-20170000(probes 264641:264645) chrY:20060001-20230000(probes 264632:264652) 0.040752 0.040752 0: t<0.1; 1: 0.10.9 1 0 0 2 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 1 1 0 0 0 1 0 0 0 1 2 1 0 1 Deletion Peak 1 1p21.3 chr1:73290002-119910000(probes 6726:11193) chr1:94520001-95489999(probes 8775:8872) chr1:89350001-114970000(probes 8257:10707) 0.0037072 0.0037072 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 1 1 0 1 1 Deletion Peak 2 6q25.3 chr6:57300001-170805979(probes 98563:108783) chr6:156760002-158100000(probes 107720:107845) chr6:148360001-158869999(probes 106886:107924) 0.13845 0.13845 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 1 1 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 0 1 1 1 1 Deletion Peak 3 8p23.1 chr8:1-17159999(probes 122187:123155) chr8:6790002-8410000(probes 122512:122528) chr8:80001-38590000(probes 122196:125240) 2.2851e-05 2.2851e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 0 0 0 0 1 1 1 0 1 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 Deletion Peak 4 9p21.3 chr9:21550002-22450000(probes 137215:137311) chr9:21950002-22010000(probes 137256:137262) chr9:19980001-26470000(probes 137044:137714) 1.2537e-16 1.2537e-16 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 Deletion Peak 5 10q25.1 chr10:78020001-133797422(probes 152327:157498) chr10:107850001-110020000(probes 155138:155326) chr10:106920001-110010000(probes 155043:155325) 0.044653 0.042571 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 1 1 1 1 1 Deletion Peak 6 12p13.1 chr12:1-133275309(probes 169476:181704) chr12:12060002-15019999(probes 170438:170701) chr12:12030001-15060000(probes 170434:170706) 0.19573 0.19351 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 Deletion Peak 7 13q11 chr13:1-24170000(probes 181705:183978) chr13:18190001-18250000(probes 183558:183567) chr13:18060001-24040000(probes 183543:183966) 0.00061291 0.00065333 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 1 0 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 1 1 0 Deletion Peak 8 17p13.1 chr17:130001-64159999(probes 217492:222980) chr17:7380001-7700000(probes 218054:218083) chr17:110001-21089999(probes 217488:219155) 2.1705e-07 2.1705e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 1 1 1 0 0 1 1 1 0 1 0 1 1 1 0 1 0 1 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 1 1 1 Deletion Peak 9 19q13.33 chr19:38620002-58617616(probes 234539:236204) chr19:47820001-47960000(probes 235371:235381) chr19:47240001-51040000(probes 235313:235669) 0.11377 0.11128 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 1 0 1 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 1 1 1 Deletion Peak 10 20p12.3 chr20:1-25619999(probes 236205:238490) chr20:8820001-8849999(probes 236892:236893) chr20:8770001-9030000(probes 236886:236910) 0.11128 0.11128 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 0 0 1 1 0 1 1 0 1 1 1 1 Deletion Peak 11 21q11.2 chr21:9820002-14110000(probes 243044:243122) chr21:10330001-14000000(probes 243107:243110) chr21:9360001-14130000(probes 242985:243124) 4.8143e-07 4.8143e-07 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 Deletion Peak 12 22p11.2 chr22:10960001-16939999(probes 247244:247748) chr22:11880002-11960000(probes 247364:247373) chr22:11730001-12149999(probes 247342:247402) 7.4032e-05 7.4032e-05 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 1 0 0 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 1 1 0 0 Deletion Peak 13 Xp21.1 chrX:1-43239999(probes 250272:253339) chrX:30840002-34639999(probes 252393:252572) chrX:32050001-32079999(probes 252483:252484) 0.068113 0.076567 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 Deletion Peak 14 Yq11.223 chrY:14780001-56979030(probes 264086:268385) chrY:23200002-23309999(probes 264972:264983) chrY:16550001-26190000(probes 264271:265292) 0.0024868 0.0037072 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 0 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 1 0 0 1 1 0 0 0 1 1 0 1 1 1 0 Deletion Peak 15 Yq12 chrY:1-57227415(probes 262515:268411) chrY:56939291-57227414(probes 268383:268410) chrY:56780001-57227415(probes 268365:268411) 0.07892 0.22698 0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 1 1 Amplification Peak 1 - CN values 1q32.1 chr1:192140001-210790000(probes 15298:17119) chr1:198980001-199360000(probes 15942:15977) chr1:197050001-199460000(probes 15745:15990) 0.044469 0.044469 Actual Copy Change Given 0.21014 0.1668 0.076387 0.87777 0.85025 0.83213 1.3082 0.25359 0.17157 0.43169 1.7197 -0.11911 3.3407 0.2116 0.12328 0.55312 0.020194 0.30467 1.0393 0.42738 0.20333 0.5794 0.23868 0.53636 0.44183 0.22409 0.019893 0.99881 0.27242 0.12843 0.64082 0.73647 -0.035495 0.32855 0.47433 0.09783 0.2804 0.39811 Amplification Peak 2 - CN values 5p15.33 chr5:1020002-1310000(probes 76935:76938) chr5:1030001-1300000(probes 76936:76937) chr5:1-3420000(probes 76920:77099) 0.0041394 0.0041394 Actual Copy Change Given 0.1969 0.11672 2.6594 1.1978 0.033413 -0.022074 0.040627 0.010336 1.7283 0.39905 0.10652 0.41992 0.10868 0.71555 0.028033 0.16201 0.09499 0.3354 1.4567 0.18784 0.27834 1.1617 1.4049 0.91236 0.6937 0.34965 2.9851 -0.035143 -0.0081277 0.6665 0.37827 0.37659 0.66971 0.16828 0.50755 0.80071 0.56494 0.026204 Amplification Peak 3 - CN values 5q35.1 chr5:169550001-181380000(probes 92213:93240) chr5:172650001-172900000(probes 92500:92516) chr5:171880001-173360000(probes 92447:92563) 0.059783 0.059783 Actual Copy Change Given 0.31009 -0.33913 0.13571 0.32538 0 -0.0067561 0.047863 0.3694 -0.016419 0.2987 0.83795 0.12161 0.0064559 0.0041196 0.027406 0.32193 0.084114 0.34678 1.0902 0.096009 0.23821 0.091165 0.0534 0.59604 0.52703 0.16217 0.018637 0.28422 0.0078176 0.31531 1.3159 0.78111 0 0.29325 0.34709 0.42157 3.4769 -0.01096 Amplification Peak 4 - CN values 6p21.1 chr6:41530001-42000000(probes 96956:97008) chr6:41930001-41990000(probes 97000:97007) chr6:41590001-42010000(probes 96963:97010) 0.1476 0.1476 Actual Copy Change Given 0.061753 -0.14298 0.32569 -0.039052 0.0019717 0.3123 0 0.09101 0.22182 0.18129 0.42658 0.21462 0.015788 0.51014 0.29234 0.68045 3.6569 0.3365 0.031075 0 0.29214 0.11064 -0.033215 0.0033657 0.20356 0.31231 0.031888 1.0642 -0.24039 0.30862 0.42079 -0.054294 0.15252 0.02258 0.25586 0.15636 0.25255 0.38512 Amplification Peak 5 - CN values 7p11.2 chr7:54430001-55769999(probes 113590:113731) chr7:54720001-55130000(probes 113619:113661) chr7:52070001-63680000(probes 113351:113849) 1.354e-05 1.4269e-05 Actual Copy Change Given 3.6569 0.62123 0.40728 0.054042 0.048215 0.55719 -0.0028368 0.20718 0.95197 1.0574 1.9006 0.123 0.033251 0.78671 1.3105 3.6569 3.6569 0.34401 0.075418 -0.17001 0.37382 0.46261 0.095048 0.3307 0.59256 0.58081 0.39148 1.5739 0.015445 3.6569 0.10863 0.70346 0.12398 0.56293 0.59433 0.48008 2.4842 0.38776 Amplification Peak 6 - CN values 7q11.21 chr7:65770001-65840000(probes 113959:113965) chr7:65780001-65830000(probes 113960:113964) chr7:65780001-65860000(probes 113960:113967) 0.056998 0.065107 Actual Copy Change Given 0.31754 0.41605 0.3286 0.019486 0.050557 0.54619 0.0018457 0.39397 0.10728 0.18005 0.72166 0.13549 -0.0018434 0.40546 0.71765 2.3469 2.6876 0.34916 0.077892 -0.10827 0.39118 0.018009 0.1077 0.30371 0.35839 0.28971 0.42186 0.0075139 0.01888 2.0555 0.096053 0.12879 0.18575 0.20682 0.63855 0.16997 0.78654 0.40034 Amplification Peak 7 - CN values 8q24.21 chr8:128140001-128220000(probes 134019:134029) chr8:128160001-128200000(probes 134022:134026) chr8:91930001-145138636(probes 130227:135538) 3.7753e-09 4.6953e-09 Actual Copy Change Given 3.6569 0.49564 0 0.014344 0.033119 0.33523 1.0713 1.2402 0.047985 -0.055008 -0.047405 1.5065 3.0451 0.37894 -0.021487 0.85066 3.6569 0.78991 0.44833 2.6484 0.15122 0.12376 3.6569 0.48462 0.67177 0 0.099517 0.2791 0.023562 2.1611 0.27068 0.61933 0.69972 0.25403 1.4147 -0.13709 2.2533 0.39555 Amplification Peak 8 - CN values 8q24.3 chr8:144170002-145138636(probes 135531:135538) chr8:144180002-145138636(probes 135532:135538) chr8:91930001-145138636(probes 130227:135538) 0.00029234 0.069715 Actual Copy Change Given 0.11545 -0.025363 0 0.014344 0.033119 3.6569 1.0713 0.69557 0.047985 -0.055008 -0.053935 -0.034432 0.9212 0.37894 0.14768 1.2071 0.3469 0.78991 0.44833 0.1632 0.15122 0.12376 0.2135 0.75583 0.46044 0 0.099517 0.37671 0.023562 -0.38562 0.48799 0.88511 0.21485 0.51141 0.9463 0.027699 1.891 0.39555 Amplification Peak 9 - CN values 11q13.3 chr11:68860001-70350000(probes 163217:163370) chr11:68870001-69120000(probes 163218:163243) chr11:68870001-70190000(probes 163218:163353) 0.083912 0.083912 Actual Copy Change Given 0.067106 0.18455 0.03011 -0.11311 -0.021092 0.31206 -2.3629e-05 -0.074927 0.27454 0.20451 -0.10014 0.1244 0.0053823 0.032933 0.49754 -0.16074 0.49467 -0.064426 0.0061879 0.18705 -0.069919 0 0.059352 0.27953 0.2501 -0.011589 -0.2448 0.051973 0.0066128 3.6569 -0.0036334 0.45088 1.9315 0.00072379 -0.14956 -0.063059 0.84216 0.3555 Amplification Peak 10 - CN values 12p11.21 chr12:32300001-32639999(probes 172366:172403) chr12:32310001-32320000(probes 172367:172368) chr12:32310001-32349999(probes 172367:172371) 0.16574 0.16574 Actual Copy Change Given 0.33124 0.12266 -0.26263 1.1759 2.9706 -0.0052684 0.010044 -0.073677 0.30393 0.055156 -0.11388 0.63783 0 0.0079338 -0.013149 0.38449 -0.023475 0.29227 0.0050422 -0.45495 0.065765 0.12275 -0.11578 0.077121 0.41183 0.11602 0.19552 -0.025356 0.23123 0.18784 0.12422 -0.38523 0.04585 0.38498 0.011342 -0.39014 -0.14571 0.58653 Amplification Peak 11 - CN values 12q15 chr12:67130002-70860000(probes 175380:175797) chr12:69120001-69200000(probes 175615:175623) chr12:66430001-72259999(probes 175303:175937) 1.9704e-06 0.19654 Actual Copy Change Given 0.3668 -0.0839 0.017265 0.021617 0.065857 -0.010121 0.0092534 -0.074705 3.6569 0.081098 -0.098722 0.055398 -0.0011816 0.0049447 -0.052293 3.6569 -0.038843 -0.064056 0.0075738 0.21152 -0.084636 3.6569 3.6569 -0.09717 -0.03609 0.058951 1.7775 -0.0116 0.23014 -0.029256 0 0.01801 0.11792 2.2936 0.2479 -0.38945 0.33513 -0.22218 Amplification Peak 12 - CN values 12q15 chr12:69110002-69210000(probes 175614:175624) chr12:69120001-69200000(probes 175615:175623) chr12:66430001-72259999(probes 175303:175937) 1.9704e-06 0.0006131 Actual Copy Change Given 0.3668 -0.0839 0.017265 0.021617 0.065857 -0.010121 0.0092534 -0.074705 3.6569 0.081098 -0.098722 0.055398 -0.0011816 0.0049447 -0.052293 3.6569 -0.038843 -0.064056 0.0075738 0.21152 -0.084636 3.6569 3.6569 -0.09717 -0.03609 0.058951 1.7775 -0.0116 0.23014 -0.029256 0 0.01801 0.11792 2.2936 0.2479 -0.38945 0.33513 -0.22218 Amplification Peak 13 - CN values 14q13.3 chr14:35980002-37170000(probes 195654:195799) chr14:36610001-36630000(probes 195731:195733) chr14:33360001-39120000(probes 195392:196009) 8.1206e-08 0.086375 Actual Copy Change Given 1.1746 0.14813 0.28202 0 0.023031 0.39401 0.011501 0.032096 -0.033461 0.083762 0.77663 0.38905 0.011665 0.0070094 0.60145 0.5811 1.1577 0.34071 0.32513 3.3405 0.41225 0.067709 0.069425 1.3922 0.64131 3.6569 3.6569 3.6569 3.6569 0.72179 -0.0093174 0.061378 0.34939 0.077799 0.27082 0.19521 0.50171 0.28366 Amplification Peak 14 - CN values 14q13.3 chr14:36600002-36640000(probes 195730:195734) chr14:36610001-36630000(probes 195731:195733) chr14:33360001-39120000(probes 195392:196009) 8.1206e-08 8.7269e-05 Actual Copy Change Given 1.1746 0.14813 0.28202 0 0.023031 0.39401 0.011501 0.032096 -0.033461 0.083762 0.77663 0.38905 0.011665 0.0070094 0.60145 0.5811 1.1577 0.34071 0.32513 3.3405 0.41225 0.067709 0.069425 1.3922 0.64131 3.6569 3.6569 3.6569 3.6569 0.72179 -0.0093174 0.061378 0.34939 0.077799 0.27082 0.19521 0.50171 0.28366 Amplification Peak 15 - CN values 14q32.33 chr14:105520002-107043718(probes 202370:202388) chr14:105530002-107043718(probes 202371:202388) chr14:105530002-107043718(probes 202371:202388) 0.10086 0.11264 Actual Copy Change Given 1.1693 0.098397 -0.18216 0 0.023031 0.59504 0.018771 -0.0020697 -0.033461 0.33269 1.0657 -0.16014 0.011665 0.02505 0.51027 0.31098 0.10379 0.42453 0.29807 3.0737 0.44553 0.067709 0.016853 0.47792 -0.10866 0.10612 0.14943 2.0253 0.25941 -0.059732 0.33307 0.067856 -0.13749 0.085067 -0.47814 0.19521 0.35358 0.37899 Amplification Peak 16 - CN values 17q12 chr17:38700001-39870000(probes 220670:220791) chr17:39340001-39860000(probes 220739:220790) chr17:38710001-39890000(probes 220671:220793) 0.11728 0.11728 Actual Copy Change Given -0.053613 0.12759 0.33093 0.026237 0.13073 -0.050615 0.011092 0.29524 0.06046 0.35293 -0.062836 0.0045612 0.010008 0.038261 0.29144 -0.13614 0.047992 -0.002229 0.029502 3.6569 0.29545 0.018581 0.31764 0.57935 0.028238 0.20048 0.36307 0.44496 0.015705 0.31146 0.37728 0.39886 0.19974 0.42295 0.96808 0.24121 0.66656 0.3674 Amplification Peak 17 - CN values 19q12 chr19:29020001-29880000(probes 233546:233644) chr19:29760001-29770000(probes 233628:233629) chr19:29030001-29900000(probes 233547:233646) 0.05747 0.05747 Actual Copy Change Given -0.043853 -0.12316 1.0144 -0.03729 -0.7823 -0.00055567 0.018245 -0.3506 0.19009 0.013795 3.6569 0.4267 0.017914 0.16388 0 -0.21012 -0.067119 -0.030591 0.26393 -0.28811 1.9726 0.063919 0.043419 0.16311 -0.17469 0.052268 -0.22452 -0.079635 -0.2608 0.55389 -0.008676 0.023108 -0.13411 0.0094308 -0.15225 0.3044 -0.36726 0.30996 Amplification Peak 18 - CN values 20q13.31 chr20:57230001-59040000(probes 241226:241432) chr20:57720001-57760000(probes 241285:241289) chr20:56580001-64444167(probes 241156:241928) 0.00021234 0.0068959 Actual Copy Change Given 0.37818 0.17056 0.041666 0.020378 -0.8045 0.31718 0.014704 -0.072106 0.24469 0.4921 0.75239 -0.12727 1.8321 -0.19021 0.2813 0.49436 0.81366 0.96583 0.0053247 1.2404 0.24661 0.092156 0.093996 0.026877 0.15059 0.0064852 0.029483 0.60343 3.3025 0.31063 0.68906 0.13733 0.5126 3.6569 0.11473 0.030592 0.13206 1.1745 Amplification Peak 19 - CN values 20q13.33 chr20:62820001-64444167(probes 241834:241928) chr20:63580001-64328833(probes 241915:241915) chr20:56580001-64444167(probes 241156:241928) 0.00026442 0.017225 Actual Copy Change Given 0.74717 0.17056 0.041666 0.020378 0.74677 0.31718 0.014704 -0.072106 0.24469 0.26972 0.75239 -0.12727 3.5532 -0.19021 0.58975 0.49436 0.81366 0.96583 0.0053247 0.83319 0.24661 0.092156 0.093996 0.026877 0.15059 0.0064852 0.029483 0.90494 2.6453 0.63822 0.89203 0.13338 -0.095618 1.0809 0.027484 0.030592 0.36307 1.1745 Amplification Peak 20 - CN values 21p12 chr21:6780001-6950000(probes 242653:242672) chr21:6810001-6940000(probes 242657:242671) chr21:6740001-6970000(probes 242648:242674) 0.069715 0.069715 Actual Copy Change Given -0.26686 -0.22111 -0.043867 -0.11233 0.034483 3.6569 0.00015477 -0.00082298 -0.019204 -0.18241 0.25766 -0.082169 0.042212 0.14615 -0.48298 0.44565 -0.29524 0.24327 -0.049748 -1.0669 0.23867 0.093914 0.0058554 -0.34157 0.12042 -0.093575 0.010904 -0.036814 -0.015657 -0.2245 -0.039078 -0.029404 -0.0085608 0.26282 -0.099188 1.1091 0.093652 1.1213 Amplification Peak 21 - CN values Xq21.31 chrX:90320001-96379999(probes 257137:257458) chrX:91990001-92050000(probes 257187:257193) chrX:90330001-96399999(probes 257138:257460) 0.056998 0.095057 Actual Copy Change Given 0.96895 0.75124 -0.13384 -0.31076 0.044507 -0.00098388 1.3149 0.36614 0.17097 0.63292 0.28916 2.6247 -0.052984 -0.036021 0.14391 0.38617 0.22819 0.63557 -0.038285 -0.46583 0.087611 3.4443 0.12204 0.52664 0.31677 0.083404 0.28062 0.26938 0.46421 -0.10958 0.034615 0.04343 -0.076031 -0.045276 0.016947 -0.02875 0.54285 0.40273 Amplification Peak 22 - CN values Xq27.3 chrX:108150001-156040895(probes 258577:262514) chrX:145760001-146020000(probes 261772:261798) chrX:144170001-153469999(probes 261624:262400) 0.0052183 0.031966 Actual Copy Change Given -0.19414 0.72003 0.033305 -0.31076 0.044507 -0.00098388 2.9504 0.36614 0.17097 0.69348 2.565 0.66811 -0.053033 1.3377 0.14391 0.39638 0.62754 0.63407 -0.038285 0.88325 0.57671 -0.21179 0.12204 0.52664 0.31677 0.083404 0.2882 0.29094 0.45243 0.26044 0.034615 0.82648 -0.045399 -0.045276 0.044191 1.1146 0.88397 0.37422 Amplification Peak 23 - CN values Yq11.223 chrY:20120001-20180000(probes 264640:264646) chrY:20130001-20170000(probes 264641:264645) chrY:20060001-20230000(probes 264632:264652) 0.040752 0.040752 Actual Copy Change Given 0.81667 0.074886 -0.80937 0.94304 -0.12904 2.126 0.42582 0.0011135 0.54432 -0.82396 -0.90908 -0.045264 -0.31738 -0.79043 -0.86041 -0.13956 -0.10368 -0.7239 -0.86885 0.36579 -0.4909 1.8881 -0.05195 -1.0087 0.17351 0.33179 -0.19117 -0.34101 0.0036615 0.20507 0.016823 -0.1356 -0.39496 0.10191 2.1667 0.26455 -0.24388 0.35921 Deletion Peak 1 - CN values 1p21.3 chr1:73290002-119910000(probes 6726:11193) chr1:94520001-95489999(probes 8775:8872) chr1:89350001-114970000(probes 8257:10707) 0.0037072 0.0037072 Actual Copy Change Given -0.25777 -0.068203 0.028163 -0.054365 -0.78232 -0.34982 0.0037345 -0.35941 0 -0.13492 0.25198 0.11476 0.0024062 -0.0014742 -0.0019716 0.06849 -0.014551 -0.055623 -0.35109 -0.17801 0.045113 -0.20221 -0.032979 -0.3405 0.07081 -0.09143 -0.29077 -0.03634 0.26196 -0.052919 -0.2428 -0.025124 -0.037567 -0.43742 -0.24283 0.092253 -0.50197 -0.42163 Deletion Peak 2 - CN values 6q25.3 chr6:57300001-170805979(probes 98563:108783) chr6:156760002-158100000(probes 107720:107845) chr6:148360001-158869999(probes 106886:107924) 0.13845 0.13845 Actual Copy Change Given -0.07748 -0.21877 -0.001941 -0.076487 -0.010248 -0.34429 -0.0055076 -0.16224 0.0046378 -0.15835 0.20625 -0.3635 -0.0067932 -0.38847 -0.17745 0.24459 -0.62893 -0.29962 -0.25048 -0.024355 -0.10252 -0.2099 -0.081523 -0.12085 -0.18192 -0.095003 -0.00064887 0.35006 -0.24798 -0.03495 -0.0014189 -0.051676 0.13983 -0.00106 -0.2368 -0.11078 -0.7694 -0.42944 Deletion Peak 3 - CN values 8p23.1 chr8:1-17159999(probes 122187:123155) chr8:6790002-8410000(probes 122512:122528) chr8:80001-38590000(probes 122196:125240) 2.2851e-05 2.2851e-05 Actual Copy Change Given -0.54916 -0.037648 -0.27075 -0.00010534 0.016287 0.30166 -0.0048689 -0.3545 -0.54947 -0.45382 -0.0024591 -0.58979 -0.32856 -0.36703 -0.073938 -0.28441 -0.46892 0.39863 -0.36148 -0.56909 -0.13127 0.12185 -0.22473 -0.4101 -0.52803 -0.21178 -0.555 -0.017219 -0.025707 -0.39767 0.21074 -0.41896 -0.22738 -0.34498 -0.44062 -0.43762 -0.80706 -0.84962 Deletion Peak 4 - CN values 9p21.3 chr9:21550002-22450000(probes 137215:137311) chr9:21950002-22010000(probes 137256:137262) chr9:19980001-26470000(probes 137044:137714) 1.2537e-16 1.2537e-16 Actual Copy Change Given -0.013895 0.10117 -0.40834 -0.39523 -1.2929 -1.0451 -0.0060134 -0.26876 -0.2953 -0.82561 0.70345 -0.1193 -0.3311 0.13277 -0.93522 -0.40756 -0.26135 0.45921 -0.52434 -0.46046 -0.069577 -0.10055 -0.18148 -0.34442 -0.22537 -0.22078 -0.47141 -0.35134 -0.28586 -0.84414 -0.35348 -0.0004184 -0.053891 -0.68973 -0.22862 -0.38057 -0.71817 -1.2613 Deletion Peak 5 - CN values 10q25.1 chr10:78020001-133797422(probes 152327:157498) chr10:107850001-110020000(probes 155138:155326) chr10:106920001-110010000(probes 155043:155325) 0.044653 0.042571 Actual Copy Change Given -0.31792 -0.32103 -0.037048 -0.34889 -0.78761 -0.016873 -0.0027604 0.12863 0.0072599 -0.034164 -0.079466 -0.020846 0.0029996 -0.38484 -0.083368 -0.21062 -0.43715 -0.066046 -0.010299 -0.14688 -0.059829 -0.17974 -0.098774 -0.023827 -0.05298 -0.074377 -0.31685 -0.98476 -0.27961 -0.030757 -0.034794 -0.0039537 0.047842 -0.13149 -0.24539 -0.37275 -0.36266 -0.44407 Deletion Peak 6 - CN values 12p13.1 chr12:1-133275309(probes 169476:181704) chr12:12060002-15019999(probes 170438:170701) chr12:12030001-15060000(probes 170434:170706) 0.19573 0.19351 Actual Copy Change Given -0.70165 -0.15524 -0.26263 -0.3558 -0.80076 -0.0052684 -0.29864 -0.073677 0.031717 -0.32075 -0.11388 0.11627 0 0.0079338 -0.013149 0.38449 -0.023475 0.29227 0.0050422 -0.45495 -0.22218 -0.18766 -0.11578 -0.10403 -0.053899 -0.12227 -0.27331 -0.025356 0.23123 -0.39156 -0.33077 -0.39333 0.04585 -0.087658 0.011342 -0.39014 -0.44712 0.58653 Deletion Peak 7 - CN values 13q11 chr13:1-24170000(probes 181705:183978) chr13:18190001-18250000(probes 183558:183567) chr13:18060001-24040000(probes 183543:183966) 0.00061291 0.00065333 Actual Copy Change Given -0.46886 -0.4125 -0.01201 -0.064694 -0.78895 -0.056917 -0.063253 -0.35761 0.015098 -0.2604 -0.62038 -0.46283 -0.041674 -0.18979 -0.14634 -0.58849 -0.67828 -0.42871 -0.34984 -0.24476 -0.22065 -0.20862 -0.009023 -0.22149 -0.23372 -0.18364 -0.039745 -0.63917 -0.28923 -0.32805 -0.036342 0.020451 -0.16458 0.084873 -0.025418 -0.47181 -0.40094 0.35629 Deletion Peak 8 - CN values 17p13.1 chr17:130001-64159999(probes 217492:222980) chr17:7380001-7700000(probes 218054:218083) chr17:110001-21089999(probes 217488:219155) 2.1705e-07 2.1705e-07 Actual Copy Change Given -0.49535 -0.27204 -0.25315 -0.29429 -0.80305 -0.059321 0.010979 -0.34025 -0.15108 -0.27627 -0.080069 -0.31868 -0.0099896 -0.3679 -0.48013 -0.15488 -0.016468 -0.35914 0.014726 -0.43316 -0.22153 -0.1027 -0.18925 -0.53571 -0.060402 -0.15054 -0.28759 -0.58604 0.013917 -0.1168 -0.33592 -0.39623 0.02596 -0.026573 -0.19349 -0.39349 -0.60095 -0.46504 Deletion Peak 9 - CN values 19q13.33 chr19:38620002-58617616(probes 234539:236204) chr19:47820001-47960000(probes 235371:235381) chr19:47240001-51040000(probes 235313:235669) 0.11377 0.11128 Actual Copy Change Given -0.050816 -0.12316 -0.19868 -0.03729 -0.79593 -0.00055567 0.018245 -0.33258 -0.036105 -0.12997 -0.26288 -0.33173 0.017914 0.16388 0 -0.17641 0.41398 -0.030591 0.26343 -0.41459 -0.20028 0.063919 -0.0020498 0.011767 -0.13649 -0.10011 -0.2183 0.062005 -0.2608 -0.39822 -0.44906 0.023108 -0.13411 -0.42606 0.082478 -0.5211 -0.338 -0.4764 Deletion Peak 10 - CN values 20p12.3 chr20:1-25619999(probes 236205:238490) chr20:8820001-8849999(probes 236892:236893) chr20:8770001-9030000(probes 236886:236910) 0.11128 0.11128 Actual Copy Change Given -0.42042 0.091632 0.033986 -0.078361 0.01744 0.32301 0.0063014 -0.090661 -0.27927 -0.086543 0.7819 -0.022278 -0.0040881 -0.0019362 -0.45557 0.46084 0.95898 -0.35639 0.013543 0.074183 0.11602 0.076122 -0.15446 0.11827 -0.32714 -0.15021 0.023114 0.32422 -0.25962 -0.65905 -0.013006 -0.39485 -0.16731 0.040264 -0.21456 -0.39972 -0.1891 -0.21482 Deletion Peak 11 - CN values 21q11.2 chr21:9820002-14110000(probes 243044:243122) chr21:10330001-14000000(probes 243107:243110) chr21:9360001-14130000(probes 242985:243124) 4.8143e-07 4.8143e-07 Actual Copy Change Given -0.035767 -0.15635 -0.029513 -0.053037 -0.010236 3.6567 0.0022295 0.05584 0.034178 -0.015533 0.2271 -0.19819 0.28615 0.14817 -0.4286 0.42557 -0.14133 0.34094 0.20402 -1.0894 0.018482 -0.0049351 0.040173 -0.25279 0.1024 0.1722 -0.021449 0.0029343 -0.028746 -0.3442 -0.0095213 -0.0083693 0.014954 0.135 0.062543 1.1919 0.026693 1.0593 Deletion Peak 12 - CN values 22p11.2 chr22:10960001-16939999(probes 247244:247748) chr22:11880002-11960000(probes 247364:247373) chr22:11730001-12149999(probes 247342:247402) 7.4032e-05 7.4032e-05 Actual Copy Change Given -0.52975 -0.29281 -0.067179 -0.044076 -0.82951 0.2144 -0.011782 -0.11855 -0.078766 -0.32111 0.0097102 -0.16202 -0.01714 -0.082828 -0.18376 -0.75847 -0.063757 -0.54161 0.047767 0.31159 0.049103 0.084875 -0.044439 -0.30607 -0.51647 -0.13742 0.019689 -0.67694 -0.039958 -0.066154 -0.013523 0.36697 -0.14553 0.096896 -0.17693 -0.6172 0.26662 0.090192 Deletion Peak 13 - CN values Xp21.1 chrX:1-43239999(probes 250272:253339) chrX:30840002-34639999(probes 252393:252572) chrX:32050001-32079999(probes 252483:252484) 0.068113 0.076567 Actual Copy Change Given -0.65994 0.20559 -0.13297 -0.32207 -0.0013701 -0.011581 0.0061087 0.35082 0.04657 0.78772 0.15066 -0.028552 -0.11348 -0.39086 -0.19577 0.091837 -0.31682 0.71001 -0.031254 -0.59092 0.23476 0.22993 0.1296 0.5356 0.11666 -0.23332 -0.32786 0.278 0.46531 0.13982 0.035406 0.045573 -0.046272 -0.040563 -0.07675 0.0010075 0.52633 0.39631 Deletion Peak 14 - CN values Yq11.223 chrY:14780001-56979030(probes 264086:268385) chrY:23200002-23309999(probes 264972:264983) chrY:16550001-26190000(probes 264271:265292) 0.0024868 0.0037072 Actual Copy Change Given 0.42022 0.26584 -0.4136 0.37164 -0.12904 1.3669 0.13688 0.0011135 0.54432 -0.82396 -0.90908 -0.053577 -0.31738 -0.79043 -0.76385 -0.13956 -0.10368 -0.75959 -0.86885 0.36579 -0.4909 -0.3791 -0.05195 -1.0087 0.17351 1.1855 -0.27051 -0.34101 0.0036615 0.34451 0.016823 -0.1356 -0.96958 1.0401 -0.15054 -0.21919 -0.10036 0.35921 Deletion Peak 15 - CN values Yq12 chrY:1-57227415(probes 262515:268411) chrY:56939291-57227414(probes 268383:268410) chrY:56780001-57227415(probes 268365:268411) 0.07892 0.22698 Actual Copy Change Given -0.12688 0.26584 -0.16408 -0.15608 -0.50831 -0.322 0.13688 0.0011135 -0.17709 -0.32325 -0.41985 -0.30361 0.99364 -0.19058 -0.15173 -0.13956 -0.10368 -0.12993 0.016416 0.36579 0.0043727 -0.092558 -0.05195 -0.43268 0.17351 -0.051564 -0.27051 -0.34101 0.0036615 0.34451 0.016823 -0.010352 -0.063387 0.24467 -0.15054 -0.065668 -0.48151 -0.21286