Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	11LU022_TP	C3L-00094_TP	C3L-00263_TP	C3L-00279_TP	C3L-00412_TP	C3L-00913_TP	C3L-00973_TP	C3L-01632_TP	C3L-01862_TP	C3L-01924_TP	C3L-02345_TP	C3L-02348_TP	C3L-02549_TP	C3N-00169_TP	C3N-00175_TP	C3N-00180_TP	C3N-00294_TP	C3N-00433_TP	C3N-00547_TP	C3N-00551_TP	C3N-00556_TP	C3N-00580_TP	C3N-00704_TP	C3N-00959_TP	C3N-01016_TP	C3N-01023_TP	C3N-01030_TP	C3N-01074_TP	C3N-01410_TP	C3N-01414_TP	C3N-01488_TP	C3N-01489_TP	C3N-02423_TP	
Amplification Peak  1	1q22    	chr1:119990001-157250000(probes 11066:11775)  	chr1:155000001-155200000(probes 11550:11570)  	chr1:119990002-158270000(probes 11067:11880)  	0.024151	   0.024151		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	0	1	1	0	1	1	1	2	1	1	1	2	2	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	
Amplification Peak  2	4q12    	chr4:56870001-57610000(probes 64311:64380)      	chr4:56880001-57600000(probes 64312:64379)      	chr4:56880001-57630000(probes 64312:64382)      	0.17228	    0.17228		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	1	
Amplification Peak  3	5p15.33 	chr5:1-18720000(probes 76290:77798)                    	chr5:1290001-1370000(probes 76307:76315)          	chr5:1-1980000(probes 76290:76333)                      	0.099917	   0.099917		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	0	1	0	1	0	1	0	1	0	0	0	1	2	1	1	0	1	2	0	2	1	0	0	0	1	0	1	0	0	1	1	
Amplification Peak  4	8q24.21 	chr8:125330001-130880000(probes 131982:132544)	chr8:126840001-127760000(probes 132136:132228)	chr8:119570001-135980000(probes 131390:133059)	0.0077934	  0.0077934		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	1	0	1	2	0	0	0	2	0	0	0	1	1	1	2	1	0	1	0	1	2	1	2	0	1	1	
Amplification Peak  5	11q13.3 	chr11:64850001-83740000(probes 160704:162441)  	chr11:69210001-69680000(probes 161004:161048)  	chr11:69020001-70210000(probes 160983:161103)  	0.19221	    0.19221		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	1	0	0	1	1	0	1	1	0	1	1	0	0	2	1	0	0	1	
Amplification Peak  6	12p11.21	chr12:30780001-32520000(probes 169935:170089)  	chr12:32070001-32360000(probes 170043:170072)  	chr12:30790001-32540000(probes 169936:170091)  	0.091496	   0.091496		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	1	1	0	2	0	1	1	0	0	
Amplification Peak  7	14q13.3 	chr14:35220001-36450000(probes 192639:192763)  	chr14:36330001-36390000(probes 192750:192756)  	chr14:25840001-39420000(probes 191694:193060)  	2.6262e-07	 2.6262e-07		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	1	0	1	1	1	0	2	2	2	2	2	0	0	1	1	
Amplification Peak  8	17q25.3 	chr17:37360001-83257441(probes 217318:221403)  	chr17:83180001-83210000(probes 221392:221396)  	chr17:82960001-83229360(probes 221382:221399)  	0.21456	    0.21456		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	0	1	0	0	0	0	0	1	1	0	0	1	1	0	1	1	1	1	0	1	0	1	0	0	1	0	0	1	1	1	1	
Amplification Peak  9	19q12   	chr19:29620001-29930000(probes 230224:230257)  	chr19:29710001-29820000(probes 230235:230245)  	chr19:29690001-29850000(probes 230232:230248)  	0.21456	    0.21456		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	1	0	2	1	0	0	1	1	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	1	1	0	1	1	1	0	
Amplification Peak 10	20q11.22	chr20:34750001-34900000(probes 235482:235497)  	chr20:34760001-34890000(probes 235483:235496)  	chr20:34760001-34920000(probes 235483:235499)  	0.2446	     0.2446		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	0	1	0	0	0	0	0	0	1	1	0	2	0	0	0	0	1	1	1	0	0	0	0	1	0	0	0	2	1	0	0	
Amplification Peak 11	Xq28    	chrX:145980001-155960000(probes 257746:258432)	chrX:153950001-155959999(probes 258383:258431)	chrX:153900001-155970000(probes 258377:258434)	0.19221	    0.19221		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	0	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	1	2	0	0	1	1	1	1	1	1	0	1	1	
Deletion Peak  1	1p21.3  	chr1:1-248956422(probes 1:20384)                      	chr1:88520001-109250000(probes 8070:10015)     	chr1:88610001-88639999(probes 8079:8080)        	0.24336	    0.24336		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	1	1	1	1	1	1	1	0	1	
Deletion Peak  2	4q35.2  	chr4:65650001-190214555(probes 65146:76289)    	chr4:187840002-190120000(probes 76276:76277)  	chr4:187850002-190130000(probes 76277:76278)  	0.14465	    0.14465		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	1	0	1	0	0	0	1	1	0	0	0	1	0	0	1	1	0	1	1	0	0	1	0	0	1	0	
Deletion Peak  3	6q21    	chr6:74050002-170805979(probes 98747:107571)   	chr6:104920001-105189999(probes 101556:101581)	chr6:64380001-170776984(probes 97848:107567)   	7.4808e-05	 7.4808e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	0	1	1	1	1	1	
Deletion Peak  4	8p23.1  	chr8:1-40170000(probes 120720:123855)                  	chr8:6390001-6570000(probes 120997:121013)        	chr8:5390001-6600000(probes 120993:121016)        	0.16153	    0.16153		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	1	0	1	1	0	0	1	0	0	0	0	0	1	1	1	1	0	1	1	1	0	1	0	1	1	0	
Deletion Peak  5	9p21.3  	chr9:21860001-22450000(probes 135336:135398)    	chr9:21950002-22019999(probes 135348:135353)    	chr9:21130001-26470000(probes 135272:135776)    	3.589e-07	  3.589e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	1	1	0	1	1	1	0	0	1	0	0	0	1	1	0	0	0	0	0	1	1	0	0	1	1	1	
Deletion Peak  6	11p15.5 	chr11:1-6600000(probes 155265:155792)                  	chr11:910001-1329999(probes 155336:155377)        	chr11:930001-1410000(probes 155338:155386)        	0.11843	    0.11903		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	1	0	1	0	1	0	0	0	1	0	1	1	1	0	0	0	1	1	0	0	0	1	1	0	0	1	0	0	1	1	
Deletion Peak  7	12p13.1 	chr12:1-51910000(probes 167202:171394)                	chr12:13550001-14000000(probes 168252:168297)  	chr12:11260001-14180000(probes 168067:168313)  	0.13085	    0.12583		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	1	0	0	1	0	1	1	0	1	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1	1	1	
Deletion Peak  8	13q11   	chr13:1-18870000(probes 178928:180811)                	chr13:18180002-18250000(probes 180775:180782)  	chr13:17420001-18370000(probes 180690:180799)  	4.5184e-05	 4.5184e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	0	1	1	0	0	1	0	1	1	1	1	1	1	0	0	1	1	1	0	0	1	1	0	1	0	1	0	1	1	
Deletion Peak  9	13q31.1 	chr13:63670002-114364328(probes 184766:189443)	chr13:79860001-79930000(probes 186204:186210)  	chr13:79880001-80030000(probes 186206:186221)  	0.016344	   0.015971		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	1	1	0	0	1	0	0	0	1	1	1	0	0	0	1	1	1	0	0	1	0	1	1	0	0	0	1	0	
Deletion Peak 10	16q23.1 	chr16:78010001-79599999(probes 213412:213547)  	chr16:78080001-79250000(probes 213417:213514)  	chr16:78490001-78930000(probes 213459:213485)  	0.0097003	  0.0087912		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	1	0	1	1	0	0	1	1	0	1	0	0	1	1	1	1	0	0	0	1	0	0	0	1	1	1	
Deletion Peak 11	17p13.1 	chr17:120002-64159999(probes 214297:219716)      	chr17:6630002-8809999(probes 214794:214996)      	chr17:110001-23210000(probes 214294:216034)      	8.5648e-08	 8.5648e-08		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	1	1	1	1	0	0	1	0	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	
Deletion Peak 12	18q21.33	chr18:30290001-80373285(probes 223531:227923)  	chr18:62700001-63000000(probes 226682:226712)  	chr18:59690001-75040000(probes 226394:227510)  	0.088491	   0.088491		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	1	0	0	0	1	0	1	0	1	1	1	0	0	1	1	1	1	1	0	1	0	1	0	1	0	1	1	0	
Deletion Peak 13	21p11.2 	chr21:6850002-7749999(probes 239082:239184)      	chr21:7030001-7099999(probes 239106:239112)      	chr21:6900001-7729999(probes 239087:239182)      	9.0236e-07	   0.001114		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	1	1	0	1	0	1	0	1	1	1	1	0	0	1	0	1	1	0	0	1	1	1	1	1	1	0	0	1	
Deletion Peak 14	21p11.2 	chr21:1-46709983(probes 238360:242404)                	chr21:8380001-8459999(probes 239269:239277)      	chr21:8000001-9410000(probes 239219:239392)      	8.5648e-08	    0.69272		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	1	0	1	0	1	0	1	1	1	0	0	1	1	0	1	1	1	0	1	1	1	1	1	1	0	1	1	
Deletion Peak 15	21p11.2 	chr21:7820002-9550000(probes 239195:239407)      	chr21:9060001-9140000(probes 239349:239358)      	chr21:8000001-9410000(probes 239219:239392)      	9.08e-05	   0.038973		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	0	1	1	0	1	0	1	0	1	1	1	1	1	1	0	0	0	1	1	0	1	1	0	1	1	1	0	1	1	
Deletion Peak 16	22p11.2 	chr22:1-50818468(probes 242405:246523)                	chr22:11890001-11969999(probes 243630:243637)  	chr22:11920002-11949999(probes 243634:243635)  	0.24898	     0.2683		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	1	0	0	0	1	0	0	1	1	0	1	1	1	1	0	1	
Deletion Peak 17	22q13.32	chr22:43850001-50818468(probes 246034:246523)  	chr22:48520002-48559999(probes 246481:246483)  	chr22:39840001-50818468(probes 245669:246523)  	6.0973e-05	  6.164e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	0	1	0	0	1	1	0	0	1	1	0	1	0	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	
Deletion Peak 18	Xp22.33 	chrX:1-150910000(probes 246524:258171)                	chrX:250001-3249999(probes 246556:246557)          	chrX:1-3269999(probes 246524:246559)                    	0.00029646	 0.00030165		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	
Deletion Peak 19	Xq28    	chrX:154570002-156019999(probes 258427:258443)	chrX:154570002-155960000(probes 258427:258432)	chrX:155650002-155959999(probes 258430:258431)	0.14704	    0.14465		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 20	Yq11.223	chrY:9910001-25459999(probes 259467:261107)      	chrY:23110001-23310000(probes 260867:260888)    	chrY:23140001-23290000(probes 260870:260886)    	0.025111	   0.025111		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	1	1	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	
Amplification Peak  1 - CN values	1q22    	chr1:119990001-157250000(probes 11066:11775)  	chr1:155000001-155200000(probes 11550:11570)  	chr1:119990002-158270000(probes 11067:11880)  	0.024151	   0.024151		Actual Copy Change Given	0.96099	0.59522	-0.0031046	0.32906	0.15839	0.011806	0.15596	0.56584	0.68258	1.118	0.28381	0.39828	0.15845	1.4089	1.4323	0.34841	0.80904	0.17153	0.76927	0.25374	0.4637	0.82922	1.0219	0.34525	0.77394	0.45953	0.7461	0.10201	0.7178	0.70591	0.53067	0.28729	0.61611	
Amplification Peak  2 - CN values	4q12    	chr4:56870001-57610000(probes 64311:64380)      	chr4:56880001-57600000(probes 64312:64379)      	chr4:56880001-57630000(probes 64312:64382)      	0.17228	    0.17228		Actual Copy Change Given	-0.020778	-0.046325	0.014763	0.0016614	-0.00074753	-0.14796	0	-0.095126	-0.0096618	-0.12302	0	-0.0038317	0.0017494	0.05143	-0.090978	0.061617	-0.0079549	0.009914	-0.23289	-0.031408	0.061363	1.2773	0.064668	-0.0036231	-0.26932	0.056869	0.0028567	-0.29633	-0.0023502	-0.0027671	-0.0070985	3.6569	0.12403	
Amplification Peak  3 - CN values	5p15.33 	chr5:1-18720000(probes 76290:77798)                    	chr5:1290001-1370000(probes 76307:76315)          	chr5:1-1980000(probes 76290:76333)                      	0.099917	   0.099917		Actual Copy Change Given	1.0462	0.5257	0	0.12755	0.031811	0.2206	0.02736	0.10919	-0.014862	0.84405	-0.013709	-0.0013804	0.0023773	0.59905	0.98025	0.68705	0.79786	0.0089506	0.56458	2.1852	0.049728	0.94551	0.803	0.0060036	0.051459	0.019534	0.45853	-0.24226	0.25152	-0.0058348	-0.0057955	0.63489	0.1387	
Amplification Peak  4 - CN values	8q24.21 	chr8:125330001-130880000(probes 131982:132544)	chr8:126840001-127760000(probes 132136:132228)	chr8:119570001-135980000(probes 131390:133059)	0.0077934	  0.0077934		Actual Copy Change Given	0.38044	-0.013626	0.021683	0.08922	0.014265	0.0020517	0.021446	0.20283	-0.0071691	0.86492	1.7272	0.011985	0.0027939	0.013251	0.99322	0.057901	-0.004734	-0.014029	0.66297	0.42955	0.36056	2.3022	0.79285	0.017416	0.70638	0	0.4891	3.6569	0.39309	2.6786	0.073812	0.35828	0.30479	
Amplification Peak  5 - CN values	11q13.3 	chr11:64850001-83740000(probes 160704:162441)  	chr11:69210001-69680000(probes 161004:161048)  	chr11:69020001-70210000(probes 160983:161103)  	0.19221	    0.19221		Actual Copy Change Given	-0.01995	0.055175	-0.033309	0.062881	0.0085258	0.2078	0.0025899	-0.11795	-0.0031371	0.13082	0.4176	-0.19505	-0.00014997	0	0.42129	0.6941	0.0044708	-0.036808	0.46236	0.28355	-0.070498	0.24078	0.11711	-0.0045473	0.71377	0.37023	0.032133	0.042472	1.7049	0.23427	0.011589	-0.12011	0.15639	
Amplification Peak  6 - CN values	12p11.21	chr12:30780001-32520000(probes 169935:170089)  	chr12:32070001-32360000(probes 170043:170072)  	chr12:30790001-32540000(probes 169936:170091)  	0.091496	   0.091496		Actual Copy Change Given	2.4101	0.1824	-0.00026927	-0.1439	-0.011204	0.13198	-0.22164	0.090995	-0.012898	0.0054788	0.055171	0.41227	-0.004785	-0.29139	0.015111	-0.050998	-0.016052	0.021885	0.15751	0.033869	0.16613	-0.058144	-0.30827	0.00064736	0.45907	0.17923	-0.15781	3.6569	0.0015354	0.46485	0.37611	-0.1651	-0.17145	
Amplification Peak  7 - CN values	14q13.3 	chr14:35220001-36450000(probes 192639:192763)  	chr14:36330001-36390000(probes 192750:192756)  	chr14:25840001-39420000(probes 191694:193060)  	2.6262e-07	 2.6262e-07		Actual Copy Change Given	0.20897	3.6569	-0.0051167	0.016734	0.059196	-0.13162	-0.21695	0.034181	0	0.37015	-0.067116	0.0049086	-0.32892	0.12923	0.15354	0.71278	-0.00031545	-0.037509	0.38508	0.067556	0.69534	0.63779	0.84608	-0.0030037	2.8302	3.2372	1.1326	1.0094	2.8308	-0.0077285	-0.0054751	0.3741	0.35636	
Amplification Peak  8 - CN values	17q25.3 	chr17:37360001-83257441(probes 217318:221403)  	chr17:83180001-83210000(probes 221392:221396)  	chr17:82960001-83229360(probes 221382:221399)  	0.21456	    0.21456		Actual Copy Change Given	0.22953	0.89201	0.010373	0.13558	-0.033463	-0.26203	0.0086934	0.023257	0.018901	0.38766	0.15451	0.015203	-0.00055008	0.17723	0.2711	-0.089657	0.43727	0.16215	0.13349	0.32012	0.077035	0.52273	-0.086712	0.33842	0.045489	-0.05739	0.5448	0.03752	0.071418	0.26724	0.78446	0.18689	0.4763	
Amplification Peak  9 - CN values	19q12   	chr19:29620001-29930000(probes 230224:230257)  	chr19:29710001-29820000(probes 230235:230245)  	chr19:29690001-29850000(probes 230232:230248)  	0.21456	    0.21456		Actual Copy Change Given	-0.023596	0.5165	-0.030262	0.11989	-0.11678	3.6569	0.23942	-0.37172	-0.00048156	0.20679	0.18522	-0.10146	-0.014685	-0.082616	0.12374	-0.073595	-0.0038063	0.31711	0.22769	-0.063889	-0.15718	-0.18833	-0.1327	-0.0058463	-0.20439	-0.0081589	0.26137	0.2836	-0.3228	0.17788	0.58593	0.11355	0.03737	
Amplification Peak 10 - CN values	20q11.22	chr20:34750001-34900000(probes 235482:235497)  	chr20:34760001-34890000(probes 235483:235496)  	chr20:34760001-34920000(probes 235483:235499)  	0.2446	     0.2446		Actual Copy Change Given	0.69646	0.52925	-0.0054603	0.11563	-0.006004	0.092712	0.0045909	-0.36048	0.004841	0.034246	0.20585	0.41367	-0.0034455	1.4185	-0.12091	0.034727	0.0098549	0.074378	0.19151	0.30383	0.21468	0.051993	-0.27724	0.01042	0.062375	0.25204	0.071766	-0.15717	0.022733	1.9115	0.18319	0.080678	0.017642	
Amplification Peak 11 - CN values	Xq28    	chrX:145980001-155960000(probes 257746:258432)	chrX:153950001-155959999(probes 258383:258431)	chrX:153900001-155970000(probes 258377:258434)	0.19221	    0.19221		Actual Copy Change Given	1.152	0.47913	-0.013085	0.33215	0.011768	0.54202	0.43392	-0.057202	-0.0075786	-0.011144	0.078099	-0.23861	0.0019623	0.15639	0.011092	0.002965	0.82643	0.0024393	0.83519	-0.0022221	0.53345	1.8264	-0.013902	-0.038475	0.44588	0.23434	0.29415	0.50056	0.41149	0.47385	0.00909	0.10205	0.17917	
Deletion Peak  1 - CN values	1p21.3  	chr1:1-248956422(probes 1:20384)                      	chr1:88520001-109250000(probes 8070:10015)     	chr1:88610001-88639999(probes 8079:8080)        	0.24336	    0.24336		Actual Copy Change Given	-0.23373	-0.20532	-0.0085273	-0.14635	-0.1096	0.1498	0.0022956	-0.34412	0.0014379	0.11052	-0.18429	0.0060439	0.00098702	-0.065375	0.13519	0.043032	-0.003439	-0.031946	-0.42319	0.18955	-0.15018	0.0064501	0.088354	-0.001295	-0.2816	-0.26858	-0.22055	-0.26666	-0.32699	-0.24012	-0.16865	-0.034739	-0.1799	
Deletion Peak  2 - CN values	4q35.2  	chr4:65650001-190214555(probes 65146:76289)    	chr4:187840002-190120000(probes 76276:76277)  	chr4:187850002-190130000(probes 76277:76278)  	0.14465	    0.14465		Actual Copy Change Given	-0.39705	-0.11741	0.014763	0.15677	-0.21418	-0.16293	0	-0.1981	-0.0096618	-0.12302	0	-0.0038317	0.0017494	-0.16159	-0.15122	0.012355	-0.012913	0.009914	-0.23411	0.2212	0.071155	-0.25184	-0.13569	-0.0036231	-0.33868	-0.16542	0.0078139	0.013639	-0.33436	-0.0027671	-0.018933	-0.11433	0.13428	
Deletion Peak  3 - CN values	6q21    	chr6:74050002-170805979(probes 98747:107571)   	chr6:104920001-105189999(probes 101556:101581)	chr6:64380001-170776984(probes 97848:107567)   	7.4808e-05	 7.4808e-05		Actual Copy Change Given	-0.22783	0.10591	0.010898	0	0.0049493	0	-0.015985	-0.11894	-0.0079468	-0.13597	-0.30993	0	-0.17038	-0.30404	-0.39692	-0.7105	-0.012619	-0.089236	-0.24345	-0.32893	-0.14571	-0.39356	-0.31997	0.0075668	0.0312	-0.27752	-0.45932	0	-0.33452	-0.24767	-0.35984	-0.1605	-0.19103	
Deletion Peak  4 - CN values	8p23.1  	chr8:1-40170000(probes 120720:123855)                  	chr8:6390001-6570000(probes 120997:121013)        	chr8:5390001-6600000(probes 120993:121016)        	0.16153	    0.16153		Actual Copy Change Given	0.16073	0.17954	-0.020085	-0.069809	-0.0033958	-0.12044	-0.016076	-0.20273	-0.013295	-0.52829	-0.29567	0.0032861	-0.0056111	-0.38461	-0.054545	0.039193	-0.053366	-0.095795	-0.042435	-0.295	-0.4136	-0.64797	-0.32375	0.012024	-0.21034	-0.29044	-0.25848	0.051857	-0.72399	0.48892	-0.11354	-0.22767	0.14613	
Deletion Peak  5 - CN values	9p21.3  	chr9:21860001-22450000(probes 135336:135398)    	chr9:21950002-22019999(probes 135348:135353)    	chr9:21130001-26470000(probes 135272:135776)    	3.589e-07	  3.589e-07		Actual Copy Change Given	0.19211	-0.19795	-0.028412	-0.060447	-0.14101	-0.14789	-0.006923	-0.34599	-0.69294	-0.011632	-0.37781	-0.201	-0.6837	0.16476	-0.028033	-1.2929	-0.017214	-0.014096	-0.067483	-0.30093	-0.64022	0.27314	-0.021372	-0.0060512	-0.049539	-0.034522	-0.2222	-0.60164	0.89435	-0.013022	-0.16849	-0.15743	-0.52322	
Deletion Peak  6 - CN values	11p15.5 	chr11:1-6600000(probes 155265:155792)                  	chr11:910001-1329999(probes 155336:155377)        	chr11:930001-1410000(probes 155338:155386)        	0.11843	    0.11903		Actual Copy Change Given	-0.26384	0	-0.034561	-0.26337	0.0093727	-0.14336	-0.0012689	-0.12716	-0.0037426	-0.036112	0.15614	-0.19796	-0.0016185	-0.46872	-0.36739	-0.81263	0.013628	-0.024587	0.2463	-0.17767	-0.24468	-0.086838	-0.059015	-0.0083384	-0.2782	-0.244	0.14325	-0.0067219	-0.31909	0.23855	0.0040821	-0.15421	-0.1618	
Deletion Peak  7 - CN values	12p13.1 	chr12:1-51910000(probes 167202:171394)                	chr12:13550001-14000000(probes 168252:168297)  	chr12:11260001-14180000(probes 168067:168313)  	0.13085	    0.12583		Actual Copy Change Given	-0.47477	0.1824	-0.00026927	-0.1439	-0.011204	0.12514	-0.21652	0.090995	-0.32958	-0.12747	0.055171	-0.39997	-0.004785	-0.29139	0.0054444	-0.017737	-0.0010452	0.021885	0.17378	-0.10899	-0.066151	-0.025971	-0.30827	0.00064736	0.11686	-0.020332	0.00064478	1.4866	-0.32052	0.46485	-0.34925	-0.16531	-0.17145	
Deletion Peak  8 - CN values	13q11   	chr13:1-18870000(probes 178928:180811)                	chr13:18180002-18250000(probes 180775:180782)  	chr13:17420001-18370000(probes 180690:180799)  	4.5184e-05	 4.5184e-05		Actual Copy Change Given	-0.25894	-0.31433	0.016018	0.10244	0.018435	-0.39002	-0.38539	0.032644	-0.010196	-0.25742	-0.03407	-0.18313	-0.43777	-0.3094	-0.12091	-0.40593	-0.38383	-0.041608	0.083686	-0.30678	-0.24448	-0.34928	-0.0076952	-0.0093208	-0.16605	-0.53674	-0.061215	-0.38947	-0.036051	-0.29132	0.1382	-0.17059	-0.29876	
Deletion Peak  9 - CN values	13q31.1 	chr13:63670002-114364328(probes 184766:189443)	chr13:79860001-79930000(probes 186204:186210)  	chr13:79880001-80030000(probes 186206:186221)  	0.016344	   0.015971		Actual Copy Change Given	-0.048996	-0.0020778	0.016018	-0.13987	0.018435	-0.15452	-0.22531	0.032644	-0.010196	-0.12928	-0.03407	-0.0017129	-0.0083739	-0.31861	-0.16077	-1.2929	-0.018363	-0.041608	-0.076465	-0.27781	-0.27541	-0.30658	-0.0016562	-0.0093208	-0.45065	-0.037547	-0.45783	-0.10465	0.0017497	-0.025159	-0.063448	-0.16761	-0.025308	
Deletion Peak 10 - CN values	16q23.1 	chr16:78010001-79599999(probes 213412:213547)  	chr16:78080001-79250000(probes 213417:213514)  	chr16:78490001-78930000(probes 213459:213485)  	0.0097003	  0.0087912		Actual Copy Change Given	-0.52777	0.18504	-0.0051837	0.026253	-0.0052106	-0.081039	-0.042823	-0.29328	0.00048928	-0.27093	-0.12672	0.0095205	-0.0028441	-0.30013	-0.38233	0.01754	-0.15478	0.017438	0.3189	-0.29397	-0.11966	-0.49956	-0.29814	-0.0032786	0.11939	0.011288	-0.46655	-0.0033677	0.012366	0.0012659	-0.15368	-0.15837	-0.15974	
Deletion Peak 11 - CN values	17p13.1 	chr17:120002-64159999(probes 214297:219716)      	chr17:6630002-8809999(probes 214794:214996)      	chr17:110001-23210000(probes 214294:216034)      	8.5648e-08	 8.5648e-08		Actual Copy Change Given	-0.26564	0.092482	-0.030838	-0.16121	-0.14675	-0.13487	-0.20965	0.022547	0.0018936	-0.27492	0.12431	0.018149	-0.0034681	-0.31067	-0.42447	-0.78339	-0.42675	-0.055101	-0.62775	-0.13813	-0.19612	-0.67756	-0.30425	-0.33438	-0.16329	-0.24195	-0.23317	-0.34408	-0.019524	0.015899	-0.15858	-0.15721	-0.15827	
Deletion Peak 12 - CN values	18q21.33	chr18:30290001-80373285(probes 223531:227923)  	chr18:62700001-63000000(probes 226682:226712)  	chr18:59690001-75040000(probes 226394:227510)  	0.088491	   0.088491		Actual Copy Change Given	-0.47817	-0.1523	-0.0074771	-0.21176	0.012164	-0.27578	0.0085947	-0.053691	-0.0077043	-0.23945	-0.0036776	-0.20058	0.0012585	-0.23862	-0.31853	-0.6248	-0.056072	-0.092142	-0.41561	-0.3081	-0.27296	-0.27311	-0.32555	-0.010933	-0.12269	0.22573	-0.48033	0.2891	-0.27546	-0.053028	-0.17471	-0.16293	-0.020673	
Deletion Peak 13 - CN values	21p11.2 	chr21:6850002-7749999(probes 239082:239184)      	chr21:7030001-7099999(probes 239106:239112)      	chr21:6900001-7729999(probes 239087:239182)      	9.0236e-07	   0.001114		Actual Copy Change Given	-0.61954	-0.47418	-0.038274	-0.12201	-0.074692	-0.2267	-0.25028	0.0028755	-0.10419	0.27367	-0.11979	-0.098107	-0.12536	-0.11734	-0.22323	-0.11305	-0.058748	0.014983	-0.39215	-0.012854	-0.43018	-0.39373	-0.04654	-0.027548	-0.89427	-0.46266	-0.17118	-0.17636	-0.29438	-0.24522	-0.087616	0.038318	-0.13185	
Deletion Peak 14 - CN values	21p11.2 	chr21:1-46709983(probes 238360:242404)                	chr21:8380001-8459999(probes 239269:239277)      	chr21:8000001-9410000(probes 239219:239392)      	8.5648e-08	    0.69272		Actual Copy Change Given	-0.70737	-0.5045	-0.038274	-0.096104	-0.28746	-0.15806	-0.27122	0.0028755	-0.10419	0.17318	-0.11979	-0.098107	-0.12536	-0.33812	-0.79133	-0.063452	-0.058748	-0.12295	-0.29766	-0.012854	-0.21158	-0.85278	-0.12795	-0.027548	-0.89207	-0.42972	-0.35765	-0.17636	-0.27337	-0.23116	-0.066834	-0.14005	-0.168	
Deletion Peak 15 - CN values	21p11.2 	chr21:7820002-9550000(probes 239195:239407)      	chr21:9060001-9140000(probes 239349:239358)      	chr21:8000001-9410000(probes 239219:239392)      	9.08e-05	   0.038973		Actual Copy Change Given	-0.53633	-0.57044	-0.038274	-0.096104	-0.052122	-0.15806	-0.27122	0.0028755	-0.1521	0.82728	-0.1066	-0.098107	-0.12536	-0.19628	-0.22881	-0.58682	-0.177	-0.12295	0.068912	-0.012854	-0.056491	-0.3591	-0.12795	-0.027548	-0.70047	-0.49875	0.021624	-0.17636	-0.27337	-0.23116	0.036877	-0.14005	-0.168	
Deletion Peak 16 - CN values	22p11.2 	chr22:1-50818468(probes 242405:246523)                	chr22:11890001-11969999(probes 243630:243637)  	chr22:11920002-11949999(probes 243634:243635)  	0.24898	     0.2683		Actual Copy Change Given	-0.16087	-0.36326	-0.0226	-0.080574	-0.081093	-0.059855	-0.20385	-0.00085536	-0.093694	0.029437	-0.012219	-0.034315	-0.13536	-0.4267	0.07586	-0.67363	-0.037034	-0.10249	-0.067137	0.034002	-0.094729	-0.34736	-0.056168	-0.020978	-0.27009	-0.29076	-0.0039545	-0.18658	-0.19271	-0.19713	-0.10766	-0.023434	-0.21576	
Deletion Peak 17 - CN values	22q13.32	chr22:43850001-50818468(probes 246034:246523)  	chr22:48520002-48559999(probes 246481:246483)  	chr22:39840001-50818468(probes 245669:246523)  	6.0973e-05	  6.164e-05		Actual Copy Change Given	-0.30645	-0.22999	-0.038541	-0.14173	-0.079124	0.078903	-0.21281	0.015231	0.0055365	-0.55024	-0.23279	0.010725	-0.0052435	-0.30873	-0.39433	-0.078179	-0.40422	-0.074234	-0.23994	0.16039	-0.090857	-0.92291	-0.11414	-0.0007193	-0.26273	-0.23945	-0.4628	-0.33892	-0.33019	-0.23009	-0.15157	-0.2339	-0.14445	
Deletion Peak 18 - CN values	Xp22.33 	chrX:1-150910000(probes 246524:258171)                	chrX:250001-3249999(probes 246556:246557)          	chrX:1-3269999(probes 246524:246559)                    	0.00029646	 0.00030165		Actual Copy Change Given	0.23768	0.49937	-0.035563	-0.069065	0.02088	0.056635	0.057631	-0.048835	0.0081057	-0.14903	0.40181	-0.23174	0.0038646	0.13434	-0.0067622	-0.10455	0.77384	0.0062161	0.49093	0	-0.17898	-0.087026	-0.50988	-0.027928	0.31318	0.22945	-0.012007	-0.10365	0.33912	0.46652	0.015625	0.0017408	0.16252	
Deletion Peak 19 - CN values	Xq28    	chrX:154570002-156019999(probes 258427:258443)	chrX:154570002-155960000(probes 258427:258432)	chrX:155650002-155959999(probes 258430:258431)	0.14704	    0.14465		Actual Copy Change Given	1.152	0.47913	-0.013085	0.33215	0.011768	0.54202	0.43392	-0.057202	-0.0075786	-0.011144	0.078099	-0.23861	0.0019623	0.15639	0.011092	0.002965	0.82643	0.0024393	0.83519	-0.23907	0.53345	1.8264	-0.013902	-0.038475	0.44588	0.23434	0.29415	0.50056	0.26012	0.47385	0.00909	0.10205	0.17917	
Deletion Peak 20 - CN values	Yq11.223	chrY:9910001-25459999(probes 259467:261107)      	chrY:23110001-23310000(probes 260867:260888)    	chrY:23140001-23290000(probes 260870:260886)    	0.025111	   0.025111		Actual Copy Change Given	-0.75621	-0.26163	0.54201	-0.029991	0.28324	0.0065252	-0.19696	-0.48738	-0.14006	-0.58821	0.29547	-0.091415	-0.15961	-0.81834	-0.89613	-0.71212	-0.032326	-0.18298	-0.31377	-0.62072	-0.60757	-1.2124	-0.94913	-0.12047	-1.0159	-0.79545	-0.5768	-0.48141	0.34754	-1.0054	-0.75916	-0.47285	-0.76161