GISTIC identifies genomic regions that are significantly gained or

lost across a set of tumors. The pipeline first filters out normal

samples from the segmented copy-number data by inspecting the TCGA

There were 33 tumor samples used in this analysis:  22 significant arm-level results, 11 significant focal amplifications, and 20 significant focal deletions were found.

Q value (bottom). The green line represents the significance

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 14q13.3.

Genes in bold are cancer genes as defined by  <a href="http://www.sanger.ac.uk/genetics/CGP/Census/">The Sanger Institute: Cancer Gene Census</a>

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 8q24.21.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 1q22.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 12p11.21.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 5p15.33.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 4q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 11q13.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for Xq28.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 17q25.3.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 19q12.

This is the comprehensive list of <strong>amplified</strong> genes in the wide peak for 20q11.22.

Amplifications Table - 11 significant amplifications found. Click the link in the last column to view a comprehensive list of candidate genes. If no genes were identified within the peak, the nearest gene appears in brackets.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 17p13.1.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 9p21.3.