This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 20p12.3.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 18p11.32.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 5q23.1.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 10q26.3.

This is the comprehensive list of <strong>deleted</strong> genes in the wide peak for 21p12.

Deletions Table - 22 significant deletions found. Click the link in the last column to view a comprehensive list of candidate genes. If no genes were identified within the peak, the nearest gene appears in brackets.

Arm-level significance table - 23 significant results found. The significance cutoff is at Q value=0.25.

Segmentation File: The segmentation file contains the segmented

data for all the samples identified by GLAD, CBS, or some other

segmentation algorithm.  (See GLAD file format in the Genepattern

file formats documentation.)  It is a six column, tab-delimited

file with an optional first line identifying the columns.

Positions are in base pair units.The column headers are: (1)

Sample (sample name), (2) Chromosome (chromosome number), (3)

Start Position (segment start position, in bases), (4) End

Position (segment end position, in bases), (5) Num markers (number

of markers in segment), (6) Seg.CN (log2() -1 of copy number).

Markers File: The markers file identifies the marker names and

positions of the markers in the original dataset (before

segmentation). It is a three column, tab-delimited file with an

optional header. The column headers are: (1) Marker Name, (2)

Chromosome, (3) Marker Position (in bases).

Reference Genome: The reference genome file contains information

about the location of genes and cytobands on a given build of the

genome. Reference genome files are created in Matlab and are

CNV Files: There are two options for the cnv file. The first

option allows CNVs to be identified by marker name. The second