Clinical Features Time to Death AGE GENDER KARNOFSKY.PERFORMANCE.SCORE HISTOLOGICAL.TYPE PATHOLOGY.T PATHOLOGY.N PATHOLOGICSPREAD(M) TUMOR.STAGE RADIATIONS.RADIATION.REGIMENINDICATION NEOADJUVANT.THERAPY NUMBERPACKYEARSSMOKED STOPPEDSMOKINGYEAR TOBACCOSMOKINGHISTORYINDICATOR YEAROFTOBACCOSMOKINGONSET nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1p gain 33 (15%) 190 0.98519 1 0.0046021 1 0.85181 1 0.5122 1 0.97961 1 0.44853 1 0.027212 1 0.47906 1 0.021051 1 0.70433 1 1 1 0.62728 1 0.94347 1 0.61639 1 0.74505 1 1q gain 93 (42%) 130 0.94931 1 0.46353 1 0.41406 1 0.38299 1 0.7399 1 0.50938 1 0.19415 1 0.21272 1 0.068903 1 0.78824 1 0.46725 1 0.74619 1 0.52171 1 0.84917 1 0.19882 1 2p gain 27 (12%) 196 0.33106 1 0.19294 1 0.00088579 0.966 NA NA 0.96169 1 0.33724 1 0.27915 1 0.03489 1 0.1104 1 0.70001 1 0.77997 1 0.29884 1 0.034257 1 0.10089 1 0.99637 1 2q gain 23 (10%) 200 0.43832 1 0.88823 1 0.013409 1 NA NA 0.7732 1 0.90394 1 0.57827 1 0.019668 1 0.12235 1 1 1 1 1 0.27767 1 0.57954 1 0.067581 1 0.49974 1 3p gain 6 (3%) 217 0.0061068 1 0.78714 1 1 1 NA NA 0.38676 1 0.019125 1 0.43666 1 0.22846 1 0.27883 1 0.34475 1 0.24958 1 0.45304 1 0.92366 1 0.81065 1 0.62634 1 3q gain 10 (4%) 213 0.166 1 0.52814 1 0.75189 1 NA NA 0.68982 1 0.12619 1 0.60067 1 0.31744 1 0.44701 1 0.50901 1 0.20681 1 0.56465 1 0.92366 1 0.84991 1 0.02498 1 4p gain 14 (6%) 209 0.14071 1 0.013221 1 0.1634 1 NA NA 0.82751 1 0.53754 1 0.92509 1 0.062573 1 0.13383 1 1 1 0.70513 1 0.39723 1 0.22225 1 0.17486 1 0.43152 1 4q gain 4 (2%) 219 0.18895 1 0.074323 1 0.036018 1 NA NA 0.99943 1 0.63137 1 0.82071 1 0.17872 1 0.1447 1 0.24459 1 0.50811 1 0.063351 1 NA NA 0.57185 1 0.061048 1 5p gain 83 (37%) 140 0.72857 1 0.43049 1 0.48904 1 0.91923 1 0.73969 1 0.57994 1 0.86732 1 0.68315 1 0.99491 1 0.093768 1 0.57534 1 0.052917 1 0.17542 1 0.71445 1 0.68422 1 5q gain 29 (13%) 194 0.71303 1 0.91055 1 0.68982 1 NA NA 0.9505 1 0.80209 1 0.84331 1 0.50658 1 0.92992 1 0.030912 1 0.02893 1 0.38332 1 0.91339 1 0.08866 1 0.23398 1 6p gain 27 (12%) 196 0.9734 1 0.93254 1 0.83699 1 0.63286 1 0.71519 1 0.086703 1 0.23734 1 0.85214 1 0.76461 1 0.70001 1 0.77997 1 0.8333 1 0.96987 1 0.066287 1 0.42592 1 6q gain 5 (2%) 218 0.40575 1 0.68447 1 0.38785 1 NA NA 0.81419 1 0.10495 1 0.82324 1 1 1 0.5249 1 1 1 0.18467 1 0.78817 1 NA NA 0.078643 1 NA NA 7p gain 73 (33%) 150 0.21822 1 0.053871 1 0.39213 1 0.23 1 0.83084 1 0.47147 1 0.0085926 1 0.23291 1 0.21185 1 0.77834 1 0.43918 1 0.56547 1 0.23417 1 0.59735 1 0.53269 1 7q gain 52 (23%) 171 0.74706 1 0.0053614 1 0.75114 1 0.62214 1 0.25957 1 0.37313 1 0.083388 1 0.16691 1 0.15784 1 1 1 0.28412 1 0.31969 1 0.3101 1 0.92914 1 0.56425 1 8p gain 22 (10%) 201 0.22063 1 0.0017131 1 0.65225 1 NA NA 0.98544 1 0.9364 1 0.75847 1 0.91303 1 1 1 0.17323 1 0.36598 1 0.92512 1 0.056351 1 0.16288 1 0.02756 1 8q gain 63 (28%) 160 0.72941 1 0.0011971 1 1 1 0.40757 1 0.71919 1 0.74586 1 0.20702 1 0.36309 1 0.12306 1 0.76692 1 0.69145 1 0.69657 1 0.1189 1 0.083263 1 0.015784 1 9p gain 5 (2%) 218 0.29864 1 0.24244 1 0.17164 1 NA NA 0.99574 1 0.20516 1 0.213 1 0.66627 1 1 1 1 1 1 1 0.19382 1 NA NA 0.11563 1 0.047283 1 10p gain 23 (10%) 200 0.91904 1 0.20504 1 0.11925 1 NA NA 0.041148 1 0.90394 1 0.49381 1 0.68518 1 0.61926 1 1 1 1 1 0.034407 1 0.0015411 1 0.0048676 1 0.17756 1 10q gain 11 (5%) 212 0.7215 1 0.45024 1 0.21933 1 NA NA 0.0025696 1 0.11072 1 0.55985 1 0.54215 1 0.28368 1 0.54359 1 1 1 0.197 1 0.01308 1 0.069183 1 0.28692 1 11p gain 19 (9%) 204 0.48718 1 0.066805 1 0.81162 1 NA NA 0.44239 1 0.83207 1 0.50621 1 0.59204 1 0.55835 1 1 1 1 1 0.88419 1 0.88565 1 0.88998 1 0.55954 1 11q gain 26 (12%) 197 0.54882 1 0.001906 1 0.061076 1 NA NA 0.72676 1 0.58989 1 0.45414 1 0.69417 1 0.84782 1 0.68902 1 0.77622 1 0.28001 1 0.10339 1 0.08651 1 0.20253 1 12p gain 27 (12%) 196 0.85894 1 0.023802 1 0.6824 1 NA NA 0.88159 1 0.028512 1 0.069182 1 0.85214 1 0.056256 1 1 1 0.58368 1 0.75467 1 0.058194 1 0.040633 1 0.16834 1 12q gain 20 (9%) 203 0.61137 1 0.014788 1 1 1 NA NA 0.87832 1 0.016329 1 0.10669 1 0.30341 1 0.11646 1 1 1 1 1 0.076984 1 0.20298 1 0.060266 1 0.0083687 1 13q gain 10 (4%) 213 0.49738 1 0.55168 1 0.34108 1 NA NA 0.95548 1 0.44193 1 0.81506 1 0.087787 1 0.64512 1 0.50901 1 0.20681 1 0.52998 1 0.26452 1 0.75621 1 0.46645 1 14q gain 22 (10%) 201 0.90934 1 0.055424 1 0.11589 1 NA NA 0.19799 1 0.098056 1 0.24117 1 0.25651 1 0.38471 1 0.37271 1 0.76242 1 0.63727 1 0.80532 1 0.81528 1 0.71545 1 15q gain 7 (3%) 216 0.13645 1 0.52474 1 0.70208 1 NA NA 0.0097873 1 0.66719 1 0.43184 1 1 1 0.59489 1 1 1 0.60149 1 NA NA NA NA 0.019258 1 NA NA 16p gain 28 (13%) 195 0.5124 1 0.16938 1 1 1 0.2685 1 0.51723 1 0.84053 1 0.35127 1 0.25019 1 0.53429 1 1 1 0.41429 1 0.8235 1 0.10338 1 0.072171 1 0.81037 1 16q gain 20 (9%) 203 0.92213 1 0.071407 1 0.63987 1 NA NA 0.43748 1 0.89969 1 0.32889 1 0.28379 1 0.46648 1 0.37214 1 1 1 0.23611 1 0.12867 1 0.8032 1 0.83158 1 17p gain 11 (5%) 212 0.71756 1 0.9054 1 0.21933 1 NA NA 0.96488 1 0.86378 1 0.093051 1 0.35168 1 0.36356 1 0.029454 1 0.39099 1 0.11256 1 0.51735 1 0.81814 1 0.93603 1 17q gain 33 (15%) 190 0.50582 1 0.42548 1 0.85181 1 0.50766 1 0.76342 1 0.31052 1 0.2031 1 0.037941 1 0.025659 1 0.052284 1 0.072962 1 0.38684 1 0.48081 1 0.81041 1 0.28999 1 18p gain 16 (7%) 207 0.24513 1 0.15956 1 0.31158 1 NA NA 0.8963 1 0.96536 1 0.38468 1 0.8742 1 1 1 1 1 1 1 0.2735 1 0.60452 1 0.46274 1 0.61388 1 18q gain 10 (4%) 213 0.72629 1 0.27768 1 0.34108 1 NA NA 0.72496 1 0.8914 1 0.90153 1 1 1 1 1 0.50901 1 0.66593 1 0.34723 1 0.32381 1 1 1 0.13174 1 19p gain 3 (1%) 220 0.53715 1 0.15341 1 0.58349 1 NA NA 0.98264 1 0.39355 1 0.19744 1 1 1 0.63819 1 1 1 0.068523 1 NA NA NA NA 0.67394 1 NA NA 19q gain 7 (3%) 216 0.93846 1 0.63325 1 0.70208 1 NA NA 0.99607 1 0.48958 1 0.50035 1 0.75302 1 0.83322 1 1 1 1 1 0.76254 1 0.12043 1 0.29259 1 0.45387 1 20p gain 22 (10%) 201 0.79041 1 0.55559 1 0.82407 1 0.63286 1 0.26566 1 0.6938 1 0.12354 1 0.90301 1 0.20671 1 0.64797 1 0.21665 1 0.76511 1 0.99268 1 0.061182 1 0.25354 1 20q gain 29 (13%) 194 0.8139 1 0.18225 1 0.42437 1 0.083483 1 0.48076 1 0.48686 1 0.80776 1 0.60742 1 0.60685 1 0.69927 1 0.18308 1 0.042743 1 0.59369 1 0.025643 1 0.59146 1 21q gain 24 (11%) 199 0.77273 1 0.85676 1 0.13398 1 NA NA 0.34339 1 0.27383 1 0.57827 1 0.44014 1 0.76413 1 1 1 0.23867 1 0.94509 1 0.17676 1 0.015122 1 0.46337 1 22q gain 11 (5%) 212 0.037387 1 0.087542 1 0.5413 1 NA NA 0.14305 1 0.21755 1 0.013364 1 0.54215 1 0.17425 1 0.54359 1 0.01861 1 0.48995 1 0.077612 1 0.58671 1 0.5953 1 Xq gain 10 (4%) 213 0.21471 1 0.47972 1 0.75189 1 NA NA 0.38419 1 0.54816 1 0.73066 1 1 1 0.72702 1 0.50901 1 0.20681 1 0.97151 1 0.42914 1 0.37992 1 0.86963 1 1p loss 15 (7%) 208 0.66999 1 0.53692 1 0.10361 1 NA NA 0.61771 1 0.49079 1 0.93078 1 0.73759 1 0.45109 1 0.26659 1 1 1 0.17017 1 0.13271 1 0.29705 1 0.26775 1 1q loss 6 (3%) 217 0.0011432 1 0.73757 1 0.089172 1 NA NA 0.20907 1 0.4714 1 1 1 0.70857 1 0.65473 1 1 1 0.59274 1 0.21871 1 NA NA 0.66741 1 NA NA 2p loss 3 (1%) 220 NA NA NA NA 1 1 NA NA 0.98264 1 1 1 0.77693 1 0.614 1 1 1 1 1 0.41187 1 NA NA NA NA 0.046065 1 NA NA 3p loss 40 (18%) 183 0.54671 1 0.42562 1 0.72545 1 0.028679 1 0.79051 1 0.76846 1 0.19817 1 0.93845 1 0.0058399 1 0.73624 1 0.81354 1 0.95177 1 0.21734 1 0.036774 1 0.63166 1 3q loss 24 (11%) 199 0.56952 1 0.94116 1 0.38424 1 0.028679 1 0.98134 1 0.46727 1 0.28365 1 0.68518 1 0.043782 1 0.66773 1 0.55601 1 0.5908 1 0.55325 1 0.20991 1 0.86408 1 4p loss 15 (7%) 208 0.56897 1 0.050598 1 0.59159 1 0.7098 1 0.023935 1 0.96296 1 0.36405 1 1 1 0.67923 1 0.26659 1 0.47527 1 0.68278 1 0.93177 1 0.94112 1 0.56423 1 4q loss 22 (10%) 201 0.76097 1 0.13779 1 0.022396 1 0.98285 1 0.88212 1 0.4639 1 0.06634 1 0.91303 1 0.13109 1 0.17323 1 0.54207 1 0.27848 1 0.93898 1 0.58473 1 0.63994 1 5p loss 4 (2%) 219 0.37403 1 0.65621 1 1 1 NA NA 0.66898 1 0.19118 1 1 1 1 1 0.58826 1 1 1 0.50811 1 0.98681 1 NA NA 0.91516 1 NA NA 5q loss 26 (12%) 197 0.46733 1 0.31917 1 0.0065392 1 NA NA 0.0091044 1 0.48285 1 0.068918 1 0.58012 1 0.23956 1 0.22699 1 0.58162 1 0.30916 1 0.15714 1 0.27106 1 0.9328 1 6p loss 20 (9%) 203 0.48986 1 0.22022 1 0.0042057 1 NA NA 0.55425 1 0.27333 1 0.54154 1 0.031015 1 0.25524 1 0.63067 1 0.74898 1 0.82496 1 0.38252 1 0.52633 1 0.64951 1 6q loss 53 (24%) 170 0.85534 1 0.56007 1 0.26892 1 0.058512 1 0.6572 1 0.74729 1 0.6985 1 0.38007 1 0.48207 1 0.75834 1 0.66933 1 0.59588 1 0.57915 1 0.94741 1 0.77413 1 7p loss 7 (3%) 216 0.6968 1 0.16337 1 0.70208 1 NA NA 0.89612 1 1 1 0.43184 1 0.27986 1 0.21101 1 1 1 0.60149 1 0.86206 1 0.93034 1 0.50174 1 0.42041 1 7q loss 7 (3%) 216 0.24881 1 0.15195 1 1 1 NA NA 0.2866 1 1 1 1 1 0.75302 1 0.83322 1 1 1 1 1 0.41452 1 NA NA 0.17489 1 NA NA 8p loss 55 (25%) 168 0.23025 1 0.51275 1 0.87586 1 0.098227 1 0.2263 1 0.21635 1 0.54787 1 0.7905 1 0.88644 1 1 1 0.52906 1 0.34382 1 0.24234 1 0.27184 1 0.80202 1 8q loss 9 (4%) 214 0.34351 1 0.87706 1 0.73453 1 NA NA 0.1392 1 0.44148 1 0.90009 1 0.36991 1 1 1 1 1 0.64055 1 0.41333 1 NA NA 0.050036 1 NA NA 9p loss 66 (30%) 157 0.071721 1 0.1494 1 0.24188 1 0.85142 1 0.36631 1 0.12245 1 0.079335 1 0.36614 1 0.018992 1 1 1 0.69033 1 0.92204 1 0.12084 1 0.13171 1 0.28131 1 9q loss 53 (24%) 170 0.54226 1 0.90428 1 0.87461 1 0.91817 1 0.5701 1 0.33168 1 0.34526 1 0.17394 1 0.10075 1 1 1 0.83291 1 0.52423 1 0.55315 1 0.15564 1 0.43634 1 10p loss 18 (8%) 205 0.52031 1 0.47427 1 0.080757 1 NA NA 0.14808 1 0.94218 1 0.36734 1 0.75567 1 0.64017 1 0.61695 1 0.74453 1 0.48105 1 0.88298 1 0.18772 1 0.85582 1 10q loss 16 (7%) 207 0.72145 1 0.090906 1 0.43381 1 NA NA 0.19407 1 0.60069 1 0.087439 1 1 1 0.08079 1 0.60819 1 1 1 0.10732 1 0.94958 1 0.48597 1 0.17764 1 11p loss 7 (3%) 216 0.32306 1 0.00025776 0.282 0.70208 1 NA NA 0.97819 1 0.33517 1 0.062043 1 0.27986 1 0.03608 1 1 1 0.60149 1 0.69925 1 0.15222 1 0.15222 1 0.13927 1 11q loss 9 (4%) 214 0.32855 1 0.22698 1 1 1 NA NA 0.98249 1 0.75934 1 0.30848 1 0.11721 1 0.18712 1 0.472 1 0.16239 1 0.25982 1 0.47647 1 0.37992 1 0.61203 1 12p loss 20 (9%) 203 0.43814 1 0.68686 1 1 1 0.7098 1 0.73225 1 0.29332 1 0.94602 1 0.38438 1 0.87674 1 0.63067 1 0.21136 1 0.57391 1 0.47089 1 0.06273 1 0.21485 1 12q loss 14 (6%) 209 0.30681 1 0.77904 1 0.40582 1 NA NA 0.98337 1 0.86163 1 0.25594 1 0.52605 1 0.21611 1 0.60603 1 0.47727 1 0.91672 1 0.76692 1 0.63062 1 0.33265 1 13q loss 42 (19%) 181 0.10036 1 0.45067 1 0.86459 1 0.045074 1 0.48769 1 0.83933 1 0.3378 1 0.080083 1 0.086131 1 0.49127 1 0.64145 1 0.46435 1 0.57903 1 0.84012 1 0.76658 1 14q loss 18 (8%) 205 0.70754 1 0.72628 1 0.33016 1 NA NA 0.11492 1 0.77627 1 0.65606 1 0.0081666 1 0.17537 1 0.34598 1 0.5022 1 0.63449 1 0.2861 1 0.54075 1 0.55039 1 15q loss 47 (21%) 176 0.74843 1 0.0267 1 0.41192 1 NA NA 0.21447 1 0.38613 1 0.89375 1 0.44273 1 0.57581 1 0.32084 1 0.27331 1 0.8653 1 0.86583 1 0.35602 1 0.77438 1 16p loss 14 (6%) 209 0.7568 1 0.17368 1 0.40582 1 NA NA 0.38229 1 0.67913 1 0.52461 1 0.087497 1 0.13383 1 0.2402 1 0.70513 1 0.16425 1 0.18479 1 0.4316 1 0.24745 1 16q loss 26 (12%) 197 0.18914 1 0.31082 1 0.29975 1 0.81098 1 0.72901 1 0.38278 1 0.13552 1 0.35558 1 0.068617 1 0.68902 1 1 1 0.87427 1 0.98835 1 1 1 0.56553 1 17p loss 57 (26%) 166 0.98903 1 0.78379 1 0.8772 1 NA NA 0.50777 1 0.38743 1 0.46839 1 0.36844 1 0.54465 1 0.12318 1 1 1 0.62935 1 0.088786 1 0.074983 1 0.19982 1 17q loss 8 (4%) 215 0.50456 1 0.96598 1 0.30402 1 NA NA 0.053293 1 0.77512 1 0.58511 1 0.7659 1 1 1 1 1 0.12155 1 0.048038 1 0.091942 1 0.13741 1 0.7474 1 18p loss 33 (15%) 190 0.96461 1 0.09736 1 1 1 NA NA 0.40839 1 0.38502 1 0.62041 1 0.12961 1 0.080287 1 0.13536 1 0.79759 1 0.018068 1 0.54119 1 0.16683 1 0.12225 1 18q loss 55 (25%) 168 0.024542 1 0.23302 1 0.63927 1 0.80131 1 0.40367 1 0.16454 1 0.79762 1 0.16165 1 0.049118 1 0.12413 1 0.40035 1 0.48604 1 0.27222 1 0.24328 1 0.5018 1 19p loss 58 (26%) 165 0.22256 1 0.27326 1 0.00064028 0.699 NA NA 0.22542 1 0.087602 1 0.16064 1 0.094165 1 0.34642 1 1 1 0.21379 1 0.42489 1 0.62326 1 0.15762 1 0.27924 1 19q loss 28 (13%) 195 0.46531 1 0.11443 1 0.067561 1 NA NA 0.71828 1 0.20454 1 0.40062 1 0.52007 1 0.51431 1 0.41113 1 1 1 0.81197 1 0.5479 1 0.37428 1 0.61692 1 20p loss 32 (14%) 191 0.25986 1 0.40962 1 0.8477 1 NA NA 0.59108 1 0.083066 1 0.03724 1 1 1 0.20485 1 1 1 0.61194 1 0.88913 1 0.87011 1 0.52664 1 0.10383 1 20q loss 13 (6%) 210 0.60157 1 0.45388 1 0.568 1 NA NA 0.10805 1 0.75497 1 0.7783 1 0.088096 1 0.79514 1 0.60603 1 1 1 0.60897 1 0.22022 1 0.25832 1 0.5431 1 21q loss 32 (14%) 191 0.58824 1 0.8886 1 0.0034239 1 NA NA 0.46669 1 0.80942 1 0.79908 1 0.86287 1 0.83455 1 0.45748 1 0.12253 1 0.069271 1 0.047706 1 0.078082 1 0.11041 1 22q loss 45 (20%) 178 0.99615 1 0.92999 1 0.17995 1 0.34358 1 0.98875 1 0.58542 1 0.86406 1 0.14764 1 0.88854 1 0.19167 1 1 1 0.81421 1 0.44977 1 0.06798 1 0.34304 1 Xq loss 5 (2%) 218 0.0071286 1 0.3873 1 0.17164 1 NA NA 0.99755 1 0.4004 1 1 1 1 1 0.5249 1 0.03763 1 0.58897 1 0.24783 1 0.5319 1 0.7574 1 0.91427 1