		Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY		NUMBERPACKYEARSSMOKED		STOPPEDSMOKINGYEAR		TOBACCOSMOKINGHISTORYINDICATOR		YEAROFTOBACCOSMOKINGONSET	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q
1p gain	33 (15%)	190	0.98519	1	0.0046021	1	0.85181	1	0.5122	1	0.97961	1	0.44853	1	0.027212	1	0.47906	1	0.021051	1	0.70433	1	1	1	0.62728	1	0.94347	1	0.61639	1	0.74505	1
1q gain	93 (42%)	130	0.94931	1	0.46353	1	0.41406	1	0.38299	1	0.7399	1	0.50938	1	0.19415	1	0.21272	1	0.068903	1	0.78824	1	0.46725	1	0.74619	1	0.52171	1	0.84917	1	0.19882	1
2p gain	27 (12%)	196	0.33106	1	0.19294	1	0.00088579	0.966	NA	NA	0.96169	1	0.33724	1	0.27915	1	0.03489	1	0.1104	1	0.70001	1	0.77997	1	0.29884	1	0.034257	1	0.10089	1	0.99637	1
2q gain	23 (10%)	200	0.43832	1	0.88823	1	0.013409	1	NA	NA	0.7732	1	0.90394	1	0.57827	1	0.019668	1	0.12235	1	1	1	1	1	0.27767	1	0.57954	1	0.067581	1	0.49974	1
3p gain	6 (3%)	217	0.0061068	1	0.78714	1	1	1	NA	NA	0.38676	1	0.019125	1	0.43666	1	0.22846	1	0.27883	1	0.34475	1	0.24958	1	0.45304	1	0.92366	1	0.81065	1	0.62634	1
3q gain	10 (4%)	213	0.166	1	0.52814	1	0.75189	1	NA	NA	0.68982	1	0.12619	1	0.60067	1	0.31744	1	0.44701	1	0.50901	1	0.20681	1	0.56465	1	0.92366	1	0.84991	1	0.02498	1
4p gain	14 (6%)	209	0.14071	1	0.013221	1	0.1634	1	NA	NA	0.82751	1	0.53754	1	0.92509	1	0.062573	1	0.13383	1	1	1	0.70513	1	0.39723	1	0.22225	1	0.17486	1	0.43152	1
4q gain	4 (2%)	219	0.18895	1	0.074323	1	0.036018	1	NA	NA	0.99943	1	0.63137	1	0.82071	1	0.17872	1	0.1447	1	0.24459	1	0.50811	1	0.063351	1	NA	NA	0.57185	1	0.061048	1
5p gain	83 (37%)	140	0.72857	1	0.43049	1	0.48904	1	0.91923	1	0.73969	1	0.57994	1	0.86732	1	0.68315	1	0.99491	1	0.093768	1	0.57534	1	0.052917	1	0.17542	1	0.71445	1	0.68422	1
5q gain	29 (13%)	194	0.71303	1	0.91055	1	0.68982	1	NA	NA	0.9505	1	0.80209	1	0.84331	1	0.50658	1	0.92992	1	0.030912	1	0.02893	1	0.38332	1	0.91339	1	0.08866	1	0.23398	1
6p gain	27 (12%)	196	0.9734	1	0.93254	1	0.83699	1	0.63286	1	0.71519	1	0.086703	1	0.23734	1	0.85214	1	0.76461	1	0.70001	1	0.77997	1	0.8333	1	0.96987	1	0.066287	1	0.42592	1
6q gain	5 (2%)	218	0.40575	1	0.68447	1	0.38785	1	NA	NA	0.81419	1	0.10495	1	0.82324	1	1	1	0.5249	1	1	1	0.18467	1	0.78817	1	NA	NA	0.078643	1	NA	NA
7p gain	73 (33%)	150	0.21822	1	0.053871	1	0.39213	1	0.23	1	0.83084	1	0.47147	1	0.0085926	1	0.23291	1	0.21185	1	0.77834	1	0.43918	1	0.56547	1	0.23417	1	0.59735	1	0.53269	1
7q gain	52 (23%)	171	0.74706	1	0.0053614	1	0.75114	1	0.62214	1	0.25957	1	0.37313	1	0.083388	1	0.16691	1	0.15784	1	1	1	0.28412	1	0.31969	1	0.3101	1	0.92914	1	0.56425	1
8p gain	22 (10%)	201	0.22063	1	0.0017131	1	0.65225	1	NA	NA	0.98544	1	0.9364	1	0.75847	1	0.91303	1	1	1	0.17323	1	0.36598	1	0.92512	1	0.056351	1	0.16288	1	0.02756	1
8q gain	63 (28%)	160	0.72941	1	0.0011971	1	1	1	0.40757	1	0.71919	1	0.74586	1	0.20702	1	0.36309	1	0.12306	1	0.76692	1	0.69145	1	0.69657	1	0.1189	1	0.083263	1	0.015784	1
9p gain	5 (2%)	218	0.29864	1	0.24244	1	0.17164	1	NA	NA	0.99574	1	0.20516	1	0.213	1	0.66627	1	1	1	1	1	1	1	0.19382	1	NA	NA	0.11563	1	0.047283	1
10p gain	23 (10%)	200	0.91904	1	0.20504	1	0.11925	1	NA	NA	0.041148	1	0.90394	1	0.49381	1	0.68518	1	0.61926	1	1	1	1	1	0.034407	1	0.0015411	1	0.0048676	1	0.17756	1
10q gain	11 (5%)	212	0.7215	1	0.45024	1	0.21933	1	NA	NA	0.0025696	1	0.11072	1	0.55985	1	0.54215	1	0.28368	1	0.54359	1	1	1	0.197	1	0.01308	1	0.069183	1	0.28692	1
11p gain	19 (9%)	204	0.48718	1	0.066805	1	0.81162	1	NA	NA	0.44239	1	0.83207	1	0.50621	1	0.59204	1	0.55835	1	1	1	1	1	0.88419	1	0.88565	1	0.88998	1	0.55954	1
11q gain	26 (12%)	197	0.54882	1	0.001906	1	0.061076	1	NA	NA	0.72676	1	0.58989	1	0.45414	1	0.69417	1	0.84782	1	0.68902	1	0.77622	1	0.28001	1	0.10339	1	0.08651	1	0.20253	1
12p gain	27 (12%)	196	0.85894	1	0.023802	1	0.6824	1	NA	NA	0.88159	1	0.028512	1	0.069182	1	0.85214	1	0.056256	1	1	1	0.58368	1	0.75467	1	0.058194	1	0.040633	1	0.16834	1
12q gain	20 (9%)	203	0.61137	1	0.014788	1	1	1	NA	NA	0.87832	1	0.016329	1	0.10669	1	0.30341	1	0.11646	1	1	1	1	1	0.076984	1	0.20298	1	0.060266	1	0.0083687	1
13q gain	10 (4%)	213	0.49738	1	0.55168	1	0.34108	1	NA	NA	0.95548	1	0.44193	1	0.81506	1	0.087787	1	0.64512	1	0.50901	1	0.20681	1	0.52998	1	0.26452	1	0.75621	1	0.46645	1
14q gain	22 (10%)	201	0.90934	1	0.055424	1	0.11589	1	NA	NA	0.19799	1	0.098056	1	0.24117	1	0.25651	1	0.38471	1	0.37271	1	0.76242	1	0.63727	1	0.80532	1	0.81528	1	0.71545	1
15q gain	7 (3%)	216	0.13645	1	0.52474	1	0.70208	1	NA	NA	0.0097873	1	0.66719	1	0.43184	1	1	1	0.59489	1	1	1	0.60149	1	NA	NA	NA	NA	0.019258	1	NA	NA
16p gain	28 (13%)	195	0.5124	1	0.16938	1	1	1	0.2685	1	0.51723	1	0.84053	1	0.35127	1	0.25019	1	0.53429	1	1	1	0.41429	1	0.8235	1	0.10338	1	0.072171	1	0.81037	1
16q gain	20 (9%)	203	0.92213	1	0.071407	1	0.63987	1	NA	NA	0.43748	1	0.89969	1	0.32889	1	0.28379	1	0.46648	1	0.37214	1	1	1	0.23611	1	0.12867	1	0.8032	1	0.83158	1
17p gain	11 (5%)	212	0.71756	1	0.9054	1	0.21933	1	NA	NA	0.96488	1	0.86378	1	0.093051	1	0.35168	1	0.36356	1	0.029454	1	0.39099	1	0.11256	1	0.51735	1	0.81814	1	0.93603	1
17q gain	33 (15%)	190	0.50582	1	0.42548	1	0.85181	1	0.50766	1	0.76342	1	0.31052	1	0.2031	1	0.037941	1	0.025659	1	0.052284	1	0.072962	1	0.38684	1	0.48081	1	0.81041	1	0.28999	1
18p gain	16 (7%)	207	0.24513	1	0.15956	1	0.31158	1	NA	NA	0.8963	1	0.96536	1	0.38468	1	0.8742	1	1	1	1	1	1	1	0.2735	1	0.60452	1	0.46274	1	0.61388	1
18q gain	10 (4%)	213	0.72629	1	0.27768	1	0.34108	1	NA	NA	0.72496	1	0.8914	1	0.90153	1	1	1	1	1	0.50901	1	0.66593	1	0.34723	1	0.32381	1	1	1	0.13174	1
19p gain	3 (1%)	220	0.53715	1	0.15341	1	0.58349	1	NA	NA	0.98264	1	0.39355	1	0.19744	1	1	1	0.63819	1	1	1	0.068523	1	NA	NA	NA	NA	0.67394	1	NA	NA
19q gain	7 (3%)	216	0.93846	1	0.63325	1	0.70208	1	NA	NA	0.99607	1	0.48958	1	0.50035	1	0.75302	1	0.83322	1	1	1	1	1	0.76254	1	0.12043	1	0.29259	1	0.45387	1
20p gain	22 (10%)	201	0.79041	1	0.55559	1	0.82407	1	0.63286	1	0.26566	1	0.6938	1	0.12354	1	0.90301	1	0.20671	1	0.64797	1	0.21665	1	0.76511	1	0.99268	1	0.061182	1	0.25354	1
20q gain	29 (13%)	194	0.8139	1	0.18225	1	0.42437	1	0.083483	1	0.48076	1	0.48686	1	0.80776	1	0.60742	1	0.60685	1	0.69927	1	0.18308	1	0.042743	1	0.59369	1	0.025643	1	0.59146	1
21q gain	24 (11%)	199	0.77273	1	0.85676	1	0.13398	1	NA	NA	0.34339	1	0.27383	1	0.57827	1	0.44014	1	0.76413	1	1	1	0.23867	1	0.94509	1	0.17676	1	0.015122	1	0.46337	1
22q gain	11 (5%)	212	0.037387	1	0.087542	1	0.5413	1	NA	NA	0.14305	1	0.21755	1	0.013364	1	0.54215	1	0.17425	1	0.54359	1	0.01861	1	0.48995	1	0.077612	1	0.58671	1	0.5953	1
Xq gain	10 (4%)	213	0.21471	1	0.47972	1	0.75189	1	NA	NA	0.38419	1	0.54816	1	0.73066	1	1	1	0.72702	1	0.50901	1	0.20681	1	0.97151	1	0.42914	1	0.37992	1	0.86963	1
1p loss	15 (7%)	208	0.66999	1	0.53692	1	0.10361	1	NA	NA	0.61771	1	0.49079	1	0.93078	1	0.73759	1	0.45109	1	0.26659	1	1	1	0.17017	1	0.13271	1	0.29705	1	0.26775	1
1q loss	6 (3%)	217	0.0011432	1	0.73757	1	0.089172	1	NA	NA	0.20907	1	0.4714	1	1	1	0.70857	1	0.65473	1	1	1	0.59274	1	0.21871	1	NA	NA	0.66741	1	NA	NA
2p loss	3 (1%)	220	NA	NA	NA	NA	1	1	NA	NA	0.98264	1	1	1	0.77693	1	0.614	1	1	1	1	1	0.41187	1	NA	NA	NA	NA	0.046065	1	NA	NA
3p loss	40 (18%)	183	0.54671	1	0.42562	1	0.72545	1	0.028679	1	0.79051	1	0.76846	1	0.19817	1	0.93845	1	0.0058399	1	0.73624	1	0.81354	1	0.95177	1	0.21734	1	0.036774	1	0.63166	1
3q loss	24 (11%)	199	0.56952	1	0.94116	1	0.38424	1	0.028679	1	0.98134	1	0.46727	1	0.28365	1	0.68518	1	0.043782	1	0.66773	1	0.55601	1	0.5908	1	0.55325	1	0.20991	1	0.86408	1
4p loss	15 (7%)	208	0.56897	1	0.050598	1	0.59159	1	0.7098	1	0.023935	1	0.96296	1	0.36405	1	1	1	0.67923	1	0.26659	1	0.47527	1	0.68278	1	0.93177	1	0.94112	1	0.56423	1
4q loss	22 (10%)	201	0.76097	1	0.13779	1	0.022396	1	0.98285	1	0.88212	1	0.4639	1	0.06634	1	0.91303	1	0.13109	1	0.17323	1	0.54207	1	0.27848	1	0.93898	1	0.58473	1	0.63994	1
5p loss	4 (2%)	219	0.37403	1	0.65621	1	1	1	NA	NA	0.66898	1	0.19118	1	1	1	1	1	0.58826	1	1	1	0.50811	1	0.98681	1	NA	NA	0.91516	1	NA	NA
5q loss	26 (12%)	197	0.46733	1	0.31917	1	0.0065392	1	NA	NA	0.0091044	1	0.48285	1	0.068918	1	0.58012	1	0.23956	1	0.22699	1	0.58162	1	0.30916	1	0.15714	1	0.27106	1	0.9328	1
6p loss	20 (9%)	203	0.48986	1	0.22022	1	0.0042057	1	NA	NA	0.55425	1	0.27333	1	0.54154	1	0.031015	1	0.25524	1	0.63067	1	0.74898	1	0.82496	1	0.38252	1	0.52633	1	0.64951	1
6q loss	53 (24%)	170	0.85534	1	0.56007	1	0.26892	1	0.058512	1	0.6572	1	0.74729	1	0.6985	1	0.38007	1	0.48207	1	0.75834	1	0.66933	1	0.59588	1	0.57915	1	0.94741	1	0.77413	1
7p loss	7 (3%)	216	0.6968	1	0.16337	1	0.70208	1	NA	NA	0.89612	1	1	1	0.43184	1	0.27986	1	0.21101	1	1	1	0.60149	1	0.86206	1	0.93034	1	0.50174	1	0.42041	1
7q loss	7 (3%)	216	0.24881	1	0.15195	1	1	1	NA	NA	0.2866	1	1	1	1	1	0.75302	1	0.83322	1	1	1	1	1	0.41452	1	NA	NA	0.17489	1	NA	NA
8p loss	55 (25%)	168	0.23025	1	0.51275	1	0.87586	1	0.098227	1	0.2263	1	0.21635	1	0.54787	1	0.7905	1	0.88644	1	1	1	0.52906	1	0.34382	1	0.24234	1	0.27184	1	0.80202	1
8q loss	9 (4%)	214	0.34351	1	0.87706	1	0.73453	1	NA	NA	0.1392	1	0.44148	1	0.90009	1	0.36991	1	1	1	1	1	0.64055	1	0.41333	1	NA	NA	0.050036	1	NA	NA
9p loss	66 (30%)	157	0.071721	1	0.1494	1	0.24188	1	0.85142	1	0.36631	1	0.12245	1	0.079335	1	0.36614	1	0.018992	1	1	1	0.69033	1	0.92204	1	0.12084	1	0.13171	1	0.28131	1
9q loss	53 (24%)	170	0.54226	1	0.90428	1	0.87461	1	0.91817	1	0.5701	1	0.33168	1	0.34526	1	0.17394	1	0.10075	1	1	1	0.83291	1	0.52423	1	0.55315	1	0.15564	1	0.43634	1
10p loss	18 (8%)	205	0.52031	1	0.47427	1	0.080757	1	NA	NA	0.14808	1	0.94218	1	0.36734	1	0.75567	1	0.64017	1	0.61695	1	0.74453	1	0.48105	1	0.88298	1	0.18772	1	0.85582	1
10q loss	16 (7%)	207	0.72145	1	0.090906	1	0.43381	1	NA	NA	0.19407	1	0.60069	1	0.087439	1	1	1	0.08079	1	0.60819	1	1	1	0.10732	1	0.94958	1	0.48597	1	0.17764	1
11p loss	7 (3%)	216	0.32306	1	0.00025776	0.282	0.70208	1	NA	NA	0.97819	1	0.33517	1	0.062043	1	0.27986	1	0.03608	1	1	1	0.60149	1	0.69925	1	0.15222	1	0.15222	1	0.13927	1
11q loss	9 (4%)	214	0.32855	1	0.22698	1	1	1	NA	NA	0.98249	1	0.75934	1	0.30848	1	0.11721	1	0.18712	1	0.472	1	0.16239	1	0.25982	1	0.47647	1	0.37992	1	0.61203	1
12p loss	20 (9%)	203	0.43814	1	0.68686	1	1	1	0.7098	1	0.73225	1	0.29332	1	0.94602	1	0.38438	1	0.87674	1	0.63067	1	0.21136	1	0.57391	1	0.47089	1	0.06273	1	0.21485	1
12q loss	14 (6%)	209	0.30681	1	0.77904	1	0.40582	1	NA	NA	0.98337	1	0.86163	1	0.25594	1	0.52605	1	0.21611	1	0.60603	1	0.47727	1	0.91672	1	0.76692	1	0.63062	1	0.33265	1
13q loss	42 (19%)	181	0.10036	1	0.45067	1	0.86459	1	0.045074	1	0.48769	1	0.83933	1	0.3378	1	0.080083	1	0.086131	1	0.49127	1	0.64145	1	0.46435	1	0.57903	1	0.84012	1	0.76658	1
14q loss	18 (8%)	205	0.70754	1	0.72628	1	0.33016	1	NA	NA	0.11492	1	0.77627	1	0.65606	1	0.0081666	1	0.17537	1	0.34598	1	0.5022	1	0.63449	1	0.2861	1	0.54075	1	0.55039	1
15q loss	47 (21%)	176	0.74843	1	0.0267	1	0.41192	1	NA	NA	0.21447	1	0.38613	1	0.89375	1	0.44273	1	0.57581	1	0.32084	1	0.27331	1	0.8653	1	0.86583	1	0.35602	1	0.77438	1
16p loss	14 (6%)	209	0.7568	1	0.17368	1	0.40582	1	NA	NA	0.38229	1	0.67913	1	0.52461	1	0.087497	1	0.13383	1	0.2402	1	0.70513	1	0.16425	1	0.18479	1	0.4316	1	0.24745	1
16q loss	26 (12%)	197	0.18914	1	0.31082	1	0.29975	1	0.81098	1	0.72901	1	0.38278	1	0.13552	1	0.35558	1	0.068617	1	0.68902	1	1	1	0.87427	1	0.98835	1	1	1	0.56553	1
17p loss	57 (26%)	166	0.98903	1	0.78379	1	0.8772	1	NA	NA	0.50777	1	0.38743	1	0.46839	1	0.36844	1	0.54465	1	0.12318	1	1	1	0.62935	1	0.088786	1	0.074983	1	0.19982	1
17q loss	8 (4%)	215	0.50456	1	0.96598	1	0.30402	1	NA	NA	0.053293	1	0.77512	1	0.58511	1	0.7659	1	1	1	1	1	0.12155	1	0.048038	1	0.091942	1	0.13741	1	0.7474	1
18p loss	33 (15%)	190	0.96461	1	0.09736	1	1	1	NA	NA	0.40839	1	0.38502	1	0.62041	1	0.12961	1	0.080287	1	0.13536	1	0.79759	1	0.018068	1	0.54119	1	0.16683	1	0.12225	1
18q loss	55 (25%)	168	0.024542	1	0.23302	1	0.63927	1	0.80131	1	0.40367	1	0.16454	1	0.79762	1	0.16165	1	0.049118	1	0.12413	1	0.40035	1	0.48604	1	0.27222	1	0.24328	1	0.5018	1
19p loss	58 (26%)	165	0.22256	1	0.27326	1	0.00064028	0.699	NA	NA	0.22542	1	0.087602	1	0.16064	1	0.094165	1	0.34642	1	1	1	0.21379	1	0.42489	1	0.62326	1	0.15762	1	0.27924	1
19q loss	28 (13%)	195	0.46531	1	0.11443	1	0.067561	1	NA	NA	0.71828	1	0.20454	1	0.40062	1	0.52007	1	0.51431	1	0.41113	1	1	1	0.81197	1	0.5479	1	0.37428	1	0.61692	1
20p loss	32 (14%)	191	0.25986	1	0.40962	1	0.8477	1	NA	NA	0.59108	1	0.083066	1	0.03724	1	1	1	0.20485	1	1	1	0.61194	1	0.88913	1	0.87011	1	0.52664	1	0.10383	1
20q loss	13 (6%)	210	0.60157	1	0.45388	1	0.568	1	NA	NA	0.10805	1	0.75497	1	0.7783	1	0.088096	1	0.79514	1	0.60603	1	1	1	0.60897	1	0.22022	1	0.25832	1	0.5431	1
21q loss	32 (14%)	191	0.58824	1	0.8886	1	0.0034239	1	NA	NA	0.46669	1	0.80942	1	0.79908	1	0.86287	1	0.83455	1	0.45748	1	0.12253	1	0.069271	1	0.047706	1	0.078082	1	0.11041	1
22q loss	45 (20%)	178	0.99615	1	0.92999	1	0.17995	1	0.34358	1	0.98875	1	0.58542	1	0.86406	1	0.14764	1	0.88854	1	0.19167	1	1	1	0.81421	1	0.44977	1	0.06798	1	0.34304	1
Xq loss	5 (2%)	218	0.0071286	1	0.3873	1	0.17164	1	NA	NA	0.99755	1	0.4004	1	1	1	1	1	0.5249	1	0.03763	1	0.58897	1	0.24783	1	0.5319	1	0.7574	1	0.91427	1
