Broad GDAC awg_pancan12__2013_03_19 Run Status : PANCAN12

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
PANCAN12	5320	4838	4903	406	4890	2178	3262	1061	4150	2785	2781

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	InProcess	Successful	Unsuccessful
1	AN-Aggregate_Gene_Status	0	1	0	0	0
2	AN-Aggregate_Molecular_Subtype_Clusters	0	1	0	0	0
3	AN-CoMut2.0	1	0	0	0	0
4	AN-CoMutCV	1	0	0	0	0
5	AN-CopyNumber_Clustering_CNMF	0	0	0	0	1
6	AN-CopyNumber_GeneBySample	0	0	0	0	1
7	AN-CopyNumber_Gistic2	0	0	0	1	0
8	AN-CopyNumber_Gistic2_Analysis	0	0	0	1	0
9	AN-CopyNumber_Gistic2_Postprocess_Focal	0	0	0	1	0
10	AN-Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0	0
11	AN-Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0	0
12	AN-Correlate_Clinical_vs_Methylation	1	0	0	0	0
13	AN-Correlate_Clinical_vs_miR	1	0	0	0	0
14	AN-Correlate_Clinical_vs_miRseq	1	0	0	0	0
15	AN-Correlate_Clinical_vs_Molecular_Signatures	1	0	0	0	0
16	AN-Correlate_Clinical_vs_mRNA	1	0	0	0	0
17	AN-Correlate_Clinical_vs_mRNAseq	1	0	0	0	0
18	AN-Correlate_Clinical_vs_Mutation	1	0	0	0	0
19	AN-Correlate_Clinical_vs_RPPA	1	0	0	0	0
20	AN-Correlate_CopyNumber_vs_miR	0	0	0	0	1
21	AN-Correlate_CopyNumber_vs_mRNA	0	0	0	0	1
22	AN-Correlate_CopyNumber_vs_mRNAseq	0	0	0	0	1
23	AN-Correlate_Methylation_vs_mRNA	0	0	0	1	0
24	AN-Correlate_molecularSubtype_vs_CopyNumber_Arm	1	0	0	0	0
25	AN-Correlate_molecularSubtype_vs_CopyNumber_Focal	1	0	0	0	0
26	AN-Correlate_molecularSubtype_vs_Mutation	1	0	0	0	0
27	AN-GenerateStickFigures2.0	1	0	0	0	0
28	AN-GenerateStickFiguresCV	1	0	0	0	0
29	AN-GenerateStickFiguresS2N	1	0	0	0	0
30	AN-Hotnet	1	0	0	0	0
31	AN-Hotnet_preprocess	1	0	0	0	0
32	AN-Methylation_Clustering_CNMF	0	0	0	0	1
33	AN-Methylation_Preprocess	0	0	0	1	0
34	AN-miR_Clustering_CNMF	0	0	0	1	0
35	AN-miR_Clustering_Consensus	0	0	0	1	0
36	AN-miR_FindDirectTargets	1	0	0	0	0
37	AN-miRseq_Clustering_CNMF	1	0	0	0	0
38	AN-miRseq_Clustering_Consensus	1	0	0	0	0
39	AN-miRseq_Preprocess	1	0	0	0	0
40	AN-mRNA_Clustering_CNMF	0	0	1	0	0
41	AN-mRNA_Clustering_Consensus	0	0	0	0	1
42	AN-mRNA_Preprocess_Median	0	0	0	1	0
43	AN-mRNAseq_Clustering_CNMF	0	0	0	0	1
44	AN-mRNAseq_Clustering_Consensus	0	0	0	0	1
45	AN-Mutation_Assessor	1	0	0	0	0
46	AN-MutSigNozzleReport2.0	1	0	0	0	0
47	AN-MutSigNozzleReportCV	1	0	0	0	0
48	AN-MutSigNozzleReportS2N	1	0	0	0	0
49	AN-MutSigPreprocess2.0	1	0	0	0	0
50	AN-MutSigRun2.0	1	0	0	0	0
51	AN-MutSigRunCV	1	0	0	0	0
52	AN-MutSigRunS2N	0	0	0	0	1
53	AN-Paradigm_mRNA	1	0	0	0	0
54	AN-Paradigm_mRNA_And_CopyNumber	1	0	0	0	0
55	AN-Paradigm_Prepare_mRNA	1	0	0	0	0
56	AN-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0	0	0
57	AN-Paradigm_Prepare_RNASeq	1	0	0	0	0
58	AN-Paradigm_Prepare_RNASeq_And_Copy_Number	1	0	0	0	0
59	AN-ParadigmPreprocess_mRNA	0	0	0	0	1
60	AN-Paradigm_Preprocess_mRNA	1	0	0	0	0
61	AN-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0	0	0
62	AN-ParadigmPreprocess_RNASeq	0	0	0	0	1
63	AN-Paradigm_Preprocess_RNASeq	1	0	0	0	0
64	AN-Paradigm_Preprocess_RNASeq_And_Copy_Number	1	0	0	0	0
65	AN-Paradigm_Report_Preprocess_mRNA	1	0	0	0	0
66	AN-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0	0	0
67	AN-Paradigm_Report_Preprocess_RNASeq	1	0	0	0	0
68	AN-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1	0	0	0	0
69	AN-Paradigm_RNASeq	1	0	0	0	0
70	AN-Paradigm_RNASeq_And_Copy_Number	1	0	0	0	0
71	AN-Pathway_FindEnrichedGenes	1	0	0	0	0
72	AN-Pathway_Hotnet	1	0	0	0	0
73	AN-Pathway_Paradigm_mRNA	1	0	0	0	0
74	AN-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0	0	0
75	AN-Pathway_Paradigm_RNASeq	1	0	0	0	0
76	AN-Pathway_Paradigm_RNASeq_And_Copy_Number	1	0	0	0	0
77	AN-ProcessCoverageForMutSig2.0	1	0	0	0	0
78	AN-RPPA_Clustering_CNMF	1	0	0	0	0
79	AN-RPPA_Clustering_Consensus	1	0	0	0	0
	Total	56	2	1	8	12

This table generated on Mon Mar 25 11:14:01 2013

Broad GDAC Analyses Status awg_pancan12__2013_03_19 Run for Tumor Type: PANCAN12

Broad GDAC Analyses Status
awg_pancan12__2013_03_19 Run for Tumor Type: PANCAN12