Broad GDAC awg_pancan8__2012_08

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
GBM	598	565	563	0	287	542	0	491	0	214	276

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	Aggregate_Gene_Status	0	1
3	CNfocal_Preprocess	0	1
4	CopyNumber_Clustering_CNMF	0	1
5	CopyNumber_GeneBySample	0	1
6	CopyNumber_Gistic2	0	1
7	Correlate_Clinical_vs_CopyNumber_Arm	0	1
8	Correlate_Clinical_vs_CopyNumber_Focal	0	1
9	Correlate_Clinical_vs_miR	0	1
10	Correlate_Clinical_vs_Molecular_Signatures	0	1
11	Correlate_Clinical_vs_mRNA	0	1
12	Correlate_Clinical_vs_Mutation	0	1
13	Correlate_CopyNumber_vs_miR	0	1
14	Correlate_CopyNumber_vs_mRNA	0	1
15	Correlate_CopyNumber_vs_mRNAseq	1	0
16	Correlate_Methylation_vs_mRNA	0	1
17	GenerateStickFiguresMutSigS2N	0	1
18	Methylation_Clustering_CNMF	0	1
19	Methylation_Preprocess	0	1
20	miR_Clustering_CNMF	0	1
21	miR_Clustering_Consensus	0	1
22	miR_FindDirectTargets	0	1
23	miR_Preprocess	0	1
24	miRseq_Clustering_CNMF	1	0
25	miRseq_Clustering_Consensus	1	0
26	miRseq_Preprocess	1	0
27	mRNA_Clustering_CNMF	0	1
28	mRNA_Clustering_Consensus	0	1
29	mRNA_Preprocess_Median	0	1
30	mRNAseq_Clustering_CNMF	1	0
31	mRNAseq_Clustering_Consensus	1	0
32	mRNAseq_Preprocess	1	0
33	Mutation_Assessor	0	1
34	Mutation_Significance	0	1
35	MutSigNozzleReportS2N	0	1
36	MutSig_S2N	0	1
37	Pathway_FindEnrichedGenes	0	1
38	Pathway_Paradigm_Expression	0	1
39	Pathway_Paradigm_Expression_CopyNumber	0	1
40	RPPA_Clustering_CNMF	0	1
41	RPPA_Clustering_Consensus	0	1
	Total	7	34

This table generated on Thu Sep 13 11:15:35 2012