Broad GDAC Analyses Status
awg_pancan8__2012_08_25 Run for Tumor Type: LUSC

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
LUSC36027928902821542230202195178

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_Clusters00010
2Aggregate_Gene_Status00010
3CNfocal_Preprocess00010
4CopyNumber_Clustering_CNMF00010
5CopyNumber_GeneBySample00010
6CopyNumber_Gistic200010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_miR10000
10Correlate_Clinical_vs_Molecular_Signatures00010
11Correlate_Clinical_vs_mRNA00010
12Correlate_Clinical_vs_Mutation00010
13Correlate_CopyNumber_vs_miR10000
14Correlate_CopyNumber_vs_mRNA00010
15Correlate_CopyNumber_vs_mRNAseq00010
16Correlate_Methylation_vs_mRNA00010
17GenerateStickFiguresMutSigS2N00010
18Methylation_Clustering_CNMF00010
19Methylation_Preprocess00010
20miR_Clustering_CNMF10000
21miR_Clustering_Consensus10000
22miR_FindDirectTargets10000
23miR_Preprocess10000
24miRseq_Clustering_CNMF00010
25miRseq_Clustering_Consensus00010
26miRseq_Preprocess00010
27mRNA_Clustering_CNMF00010
28mRNA_Clustering_Consensus00010
29mRNA_Preprocess_Median00010
30mRNAseq_Clustering_CNMF00010
31mRNAseq_Clustering_Consensus00010
32mRNAseq_Preprocess00010
33Mutation_Assessor00010
34Mutation_Significance00010
35MutSigNozzleReportS2N00010
36MutSig_S2N00010
37Pathway_FindEnrichedGenes00010
38Pathway_Paradigm_Expression00010
39Pathway_Paradigm_Expression_CopyNumber00010
40RPPA_Clustering_CNMF00010
41RPPA_Clustering_Consensus00010
Total600350

This table generated on Thu Sep 13 11:15:36 2012