Broad GDAC awg_pancan8__2012_08

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
OV	592	580	566	0	557	574	297	570	454	412	316

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	Successful
1	Aggregate_Clusters	1
2	Aggregate_Gene_Status	1
3	CNfocal_Preprocess	1
4	CopyNumber_Clustering_CNMF	1
5	CopyNumber_GeneBySample	1
6	CopyNumber_Gistic2	1
7	Correlate_Clinical_vs_CopyNumber_Arm	1
8	Correlate_Clinical_vs_CopyNumber_Focal	1
9	Correlate_Clinical_vs_miR	1
10	Correlate_Clinical_vs_Molecular_Signatures	1
11	Correlate_Clinical_vs_mRNA	1
12	Correlate_Clinical_vs_Mutation	1
13	Correlate_CopyNumber_vs_miR	1
14	Correlate_CopyNumber_vs_mRNA	1
15	Correlate_CopyNumber_vs_mRNAseq	1
16	Correlate_Methylation_vs_mRNA	1
17	GenerateStickFiguresMutSigS2N	1
18	Methylation_Clustering_CNMF	1
19	Methylation_Preprocess	1
20	miR_Clustering_CNMF	1
21	miR_Clustering_Consensus	1
22	miR_FindDirectTargets	1
23	miR_Preprocess	1
24	miRseq_Clustering_CNMF	1
25	miRseq_Clustering_Consensus	1
26	miRseq_Preprocess	1
27	mRNA_Clustering_CNMF	1
28	mRNA_Clustering_Consensus	1
29	mRNA_Preprocess_Median	1
30	mRNAseq_Clustering_CNMF	1
31	mRNAseq_Clustering_Consensus	1
32	mRNAseq_Preprocess	1
33	Mutation_Assessor	1
34	Mutation_Significance	1
35	MutSigNozzleReportS2N	1
36	MutSig_S2N	1
37	Pathway_FindEnrichedGenes	1
38	Pathway_Paradigm_Expression	1
39	Pathway_Paradigm_Expression_CopyNumber	1
40	RPPA_Clustering_CNMF	1
41	RPPA_Clustering_Consensus	1
	Total	41

This table generated on Thu Sep 13 11:15:36 2012