Broad GDAC awg_pancan8__2012_08_25 Run Status : PANCAN8

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
PANCAN8	4070	3833	3782	210	3519	2149	2143	1061	2560	2282	2152

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful	Unsuccessful
1	Aggregate_Clusters	0	0	1
2	Aggregate_Gene_Status	0	0	1
3	CNfocal_Preprocess	0	1	0
4	CopyNumber_Clustering_CNMF	0	0	1
5	CopyNumber_GeneBySample	0	0	1
6	CopyNumber_Gistic2	0	1	0
7	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1
8	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1
9	Correlate_Clinical_vs_miR	0	1	0
10	Correlate_Clinical_vs_Molecular_Signatures	1	0	0
11	Correlate_Clinical_vs_mRNA	0	1	0
12	Correlate_Clinical_vs_Mutation	1	0	0
13	Correlate_CopyNumber_vs_miR	1	0	0
14	Correlate_CopyNumber_vs_mRNA	1	0	0
15	Correlate_CopyNumber_vs_mRNAseq	1	0	0
16	Correlate_Methylation_vs_mRNA	0	0	1
17	GenerateStickFiguresMutSigS2N	1	0	0
18	Methylation_Clustering_CNMF	0	0	1
19	Methylation_Preprocess	0	1	0
20	miR_Clustering_CNMF	0	1	0
21	miR_Clustering_Consensus	0	1	0
22	miR_FindDirectTargets	0	1	0
23	miR_Preprocess	0	1	0
24	miRseq_Clustering_CNMF	1	0	0
25	miRseq_Clustering_Consensus	1	0	0
26	miRseq_Preprocess	1	0	0
27	mRNA_Clustering_CNMF	0	0	1
28	mRNA_Clustering_Consensus	0	0	1
29	mRNA_Preprocess_Median	0	1	0
30	mRNAseq_Clustering_CNMF	1	0	0
31	mRNAseq_Clustering_Consensus	1	0	0
32	mRNAseq_Preprocess	0	0	1
33	Mutation_Assessor	1	0	0
34	Mutation_Significance	1	0	0
35	MutSigNozzleReportS2N	1	0	0
36	MutSig_S2N	0	0	1
37	Pathway_FindEnrichedGenes	1	0	0
38	Pathway_Paradigm_Expression	0	0	1
39	Pathway_Paradigm_Expression_CopyNumber	1	0	0
40	RPPA_Clustering_CNMF	1	0	0
41	RPPA_Clustering_Consensus	1	0	0
	Total	18	10	13

This table generated on Thu Sep 13 11:15:36 2012