# Created: Fri Aug 17 03:30:47 EDT 2012 by cgaadm_deadline
# Job: 146707    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:16
# Parameters: 
#    bar_plot = LUSC.bargraphs.png   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.bargraphs.png
#    breakdown_table = LUSC.mutation_breakdown.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.mutation_breakdown.txt
#    categories_table = LUSC.mutation_rates.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.mutation_rates.txt
#    coverage.png = LUSC.covplot.png   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.covplot.png
#    sig_table = LUSC.sig_genes.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.sig_genes.txt
#    cosmic_table = LUSC.cosmic_sig_genes.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.cosmic_sig_genes.txt
#    cosmic_table2 = LUSC.cosmic_sig_genes2.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.cosmic_sig_genes2.txt
#    cosmic_muts_table = LUSC.cosmic_mutations.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.cosmic_mutations.txt
#    cluster_table = LUSC.clustered_muts.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.clustered_muts.txt
#    geneset_table = LUSC.sig_genesets.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.sig_genesets.txt
#    genset_table2 = LUSC.sig_genesets_2.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.sig_genesets_2.txt
#    patients_c_and_r = LUSC.patients.counts_and_rates.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.patients.counts_and_rates.txt
#    ind_set = LUSC
#    mutsig_version = LUSC.MutSig_version.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.MutSig_version.txt
#    coMut_plot_png = LUSC_coMut.png   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146705/LUSC_coMut.png
#    coMut_plot_pdf = LUSC_coMut.pdf   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146705/LUSC_coMut.pdf
#    stick_figures_path = generatedStickFigurePaths.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146706/generatedStickFigurePaths.txt
#    maf_path = LUSC.final_analysis_set.maf   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.final_analysis_set.maf
#    mut_pre_rep_path = LUSC.mutation_preprocessing_report.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146702/LUSC.mutation_preprocessing_report.txt
#    mut_filt_rep_path = LUSC.mutation_filtering_report.txt   http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/jobResults/146704/LUSC.mutation_filtering_report.txt
