Running GISTIC version 2.0.16a

inputInfoFilename =

gisticInputs.txt


fid =

     3


ans =

   243


ans =

   109


ans =

    73


ans =

    65


ans =

    28


ans =

    23


ans =

    15


ans =

    24


ans =

    22


ans =

    22


ans =

    20


ans =

    21


ans =

    29


ans =

     0

...Matching fields to Array List File:
      Array  --->  array

conf_level =

    0.9900

Checking inputs...
Making D struct
Reading Markers File '/xchip/cga/reference/gistic2/genome.info.6.0_hg19.na31_minus_frequent_nan_probes_sorted_2.1.txt'
Non-unique positions ... using first marker from each position
Reading Seg File '/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN8/1677948/2.GDAC_MergeDataFiles.Finished/PANCAN8.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt'
{Warning: Shortened 49 segments in
'/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN8/1677948/2.GDAC_MergeDataFiles.Finished/PANCAN8.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt'
that overlap by one marker.} 
> In make_D_from_seg at 329
  In run_gistic2_from_seg at 163
  In call_gistic2 at 108
CL = 
               sdesc: {3769x1 cell}
                chrn: [1831228x1 double]
                 pos: [1831228x1 double]
              marker: {1831228x1 cell}
                 chr: {1x1831228 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [1831228x3769 SegArray]

Removing CNVs
Removing 258719 markers
Removed 258719 CNVs from raw data
CL = 
               sdesc: {3769x1 cell}
                chrn: [1572509x1 double]
                 pos: [1572509x1 double]
              marker: {1572509x1 cell}
                 chr: {1x1572509 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [1572509x3769 SegArray]

Sub-selecting samples...
...Matching fields to Array List File:
      Array  --->  array
Matched all 3769 samples in array list file
CL = 
               sdesc: {3769x1 cell}
                chrn: [1572509x1 double]
                 pos: [1572509x1 double]
              marker: {1572509x1 cell}
                 chr: {1x1572509 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [1572509x3769 SegArray]

Matrix size 1572509     3769
Removing NaN probes...
Removing 12912 markers with NaNs
Matrix size 1559597     3769
Merging small segments...
currently not taking care of edge of chromosomes!!!
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CL = 
               sdesc: {3769x1 cell}
                chrn: [1559597x1 double]
                 pos: [1559597x1 double]
              marker: {1559597x1 cell}
                 chr: {1x1559597 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [1559597x3769 SegArray]

Median centering data...
Saving segmented data file...
Running focal analysis...
Using supplied D...
Loading cytoband/refgene file: '/xchip/cga/reference/gistic2/hg19_with_miR_20120227.mat'
...Matching fields to Array List File:
      Array  --->  array
Subselecting 3769 samples in data.
Running focal GISTIC version 2.0.16a
params = 
        array_list_file: 'array_list.txt'
               cnv_file: {[1x54 char]}
                  t_amp: 0.1000
                  t_del: 0.1000
            genepattern: 0
      join_segment_size: 4
                    ext: ''
               remove_X: 0
     run_broad_analysis: 1
                  ziggs: [1x1 struct]
       broad_len_cutoff: 0.7000
              qv_thresh: 0.2500
             conf_level: [0.9900 0.9900]
                    cap: 1.5000
                  alpha: [2.5145 2.1653]
         do_gene_gistic: 1
        save_data_files: 1
    conserve_disk_space: 0
           use_segarray: 1
       write_gene_files: 1
          use_two_sided: 0
         do_arbitration: 1
             peak_types: ''
          save_seg_data: 1
            arm_peeloff: 1
                    res: 1.3266e-05
                  fname: ''
                  islog: 1

Removed 0 samples with more than 2000 segments
Converting data from log to copy number space...
Performing ziggurat deconstruction!
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Reconstructing focal genomes...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Saving results to: /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/160243/focal_dat.0.7.mat
Scoring segments...
Reconstructing genome: amp
Reconstructing genome: del
Scoring genomes...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Saving results to: /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/160243/scores.0.7.mat
Performing background permutations...
Amps...
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Dels...
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Conv:.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Performing gene gistic...
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In gene_score_permutations at 43
  In compute_stats at 83
  In run_focal_gistic at 190
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
Scoring gene deletions...
...scored 1000 of 40161 genes
...scored 2000 of 40161 genes
...scored 3000 of 40161 genes
...scored 4000 of 40161 genes
...scored 5000 of 40161 genes
...scored 6000 of 40161 genes
...scored 7000 of 40161 genes
...scored 8000 of 40161 genes
...scored 9000 of 40161 genes
...scored 10000 of 40161 genes
...scored 11000 of 40161 genes
...scored 12000 of 40161 genes
...scored 13000 of 40161 genes
...scored 14000 of 40161 genes
...scored 15000 of 40161 genes
...scored 16000 of 40161 genes
...scored 17000 of 40161 genes
...scored 18000 of 40161 genes
...scored 19000 of 40161 genes
...scored 20000 of 40161 genes
...scored 21000 of 40161 genes
...scored 22000 of 40161 genes
...scored 23000 of 40161 genes
...scored 24000 of 40161 genes
...scored 25000 of 40161 genes
...scored 26000 of 40161 genes
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Conv:...............................................................................
Window size = 298 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 299 out of 1461 (non-empty = 553)
Window size = 300 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 301 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 302 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 303 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 304 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 305 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 306 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 307 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 308 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 309 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 310 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 311 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 312 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 313 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 314 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 315 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 316 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 317 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 318 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 319 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 320 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 321 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 322 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 323 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 324 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 325 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 326 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 327 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 328 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 329 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 330 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 331 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 332 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 333 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 334 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 335 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 336 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 337 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 338 out of 1461 (non-empty = 553)
Window size = 339 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 340 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 341 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 342 out of 1461 (non-empty = 553)
Window size = 343 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 344 out of 1461 (non-empty = 553)
Window size = 345 out of 1461 (non-empty = 553)
Window size = 346 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 347 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 348 out of 1461 (non-empty = 553)
Window size = 349 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 350 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 351 out of 1461 (non-empty = 553)
Window size = 352 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 353 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 354 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 355 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 356 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 357 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 358 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 359 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 360 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 361 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 362 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 363 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 364 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 365 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 366 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 367 out of 1461 (non-empty = 553)
Window size = 368 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 369 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 370 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 371 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 372 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 373 out of 1461 (non-empty = 553)
Window size = 374 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 375 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 376 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 377 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 378 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 379 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 380 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 381 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 382 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 383 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 384 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 385 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 386 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 387 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 388 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 389 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 390 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 391 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 392 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 393 out of 1461 (non-empty = 553)
Window size = 394 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 395 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 396 out of 1461 (non-empty = 553)
Window size = 397 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 398 out of 1461 (non-empty = 553)
Window size = 399 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 400 out of 1461 (non-empty = 553)
Window size = 401 out of 1461 (non-empty = 553)
Window size = 402 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 403 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 404 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 405 out of 1461 (non-empty = 553)
Window size = 406 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 407 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 408 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 409 out of 1461 (non-empty = 553)
Window size = 410 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 411 out of 1461 (non-empty = 553)
Window size = 412 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 413 out of 1461 (non-empty = 553)
Window size = 414 out of 1461 (non-empty = 553)
Window size = 415 out of 1461 (non-empty = 553)
Window size = 416 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 417 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 418 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 419 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 420 out of 1461 (non-empty = 553)
Window size = 421 out of 1461 (non-empty = 553)
Window size = 422 out of 1461 (non-empty = 553)
Window size = 423 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 424 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 425 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 426 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 427 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 428 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 429 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 430 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 431 out of 1461 (non-empty = 553)
Window size = 432 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 433 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 434 out of 1461 (non-empty = 553)
Window size = 435 out of 1461 (non-empty = 553)
Window size = 436 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 437 out of 1461 (non-empty = 553)
Window size = 438 out of 1461 (non-empty = 553)
Window size = 439 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 440 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 441 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 442 out of 1461 (non-empty = 553)
Window size = 443 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 444 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 445 out of 1461 (non-empty = 553)
Window size = 446 out of 1461 (non-empty = 553)
Window size = 447 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 448 out of 1461 (non-empty = 553)
Window size = 449 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 450 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 451 out of 1461 (non-empty = 553)
Window size = 452 out of 1461 (non-empty = 553)
Window size = 453 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 454 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 455 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 456 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 457 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 458 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 459 out of 1461 (non-empty = 553)
Window size = 460 out of 1461 (non-empty = 553)
Window size = 461 out of 1461 (non-empty = 553)
Window size = 462 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 463 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 464 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 465 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 466 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 467 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 468 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 469 out of 1461 (non-empty = 553)
Window size = 470 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 471 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 472 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 473 out of 1461 (non-empty = 553)
Window size = 474 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 475 out of 1461 (non-empty = 553)
Window size = 476 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 477 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 478 out of 1461 (non-empty = 553)
Window size = 479 out of 1461 (non-empty = 553)
Window size = 480 out of 1461 (non-empty = 553)
Window size = 481 out of 1461 (non-empty = 553)
Window size = 482 out of 1461 (non-empty = 553)
Window size = 483 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 484 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 485 out of 1461 (non-empty = 553)
Window size = 486 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 487 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 488 out of 1461 (non-empty = 553)
Window size = 489 out of 1461 (non-empty = 553)
Window size = 490 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 491 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 492 out of 1461 (non-empty = 553)
Window size = 493 out of 1461 (non-empty = 553)
Window size = 494 out of 1461 (non-empty = 553)
Window size = 495 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 496 out of 1461 (non-empty = 553)
Window size = 497 out of 1461 (non-empty = 553)
Window size = 498 out of 1461 (non-empty = 553)
Window size = 499 out of 1461 (non-empty = 553)
Window size = 500 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 501 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 502 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 503 out of 1461 (non-empty = 553)
Window size = 504 out of 1461 (non-empty = 553)
Window size = 505 out of 1461 (non-empty = 553)
Window size = 506 out of 1461 (non-empty = 553)
Window size = 507 out of 1461 (non-empty = 553)
Window size = 508 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 509 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 510 out of 1461 (non-empty = 553)
Window size = 511 out of 1461 (non-empty = 553)
Window size = 512 out of 1461 (non-empty = 553)
Window size = 513 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 514 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 515 out of 1461 (non-empty = 553)
Window size = 516 out of 1461 (non-empty = 553)
Window size = 517 out of 1461 (non-empty = 553)
Window size = 518 out of 1461 (non-empty = 553)
Window size = 519 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 520 out of 1461 (non-empty = 553)
Window size = 521 out of 1461 (non-empty = 553)
Window size = 522 out of 1461 (non-empty = 553)
Window size = 523 out of 1461 (non-empty = 553)
Window size = 524 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 525 out of 1461 (non-empty = 553)
Window size = 526 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 527 out of 1461 (non-empty = 553)
Window size = 528 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 529 out of 1461 (non-empty = 553)
Window size = 530 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 531 out of 1461 (non-empty = 553)
Window size = 532 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 533 out of 1461 (non-empty = 553)
Window size = 534 out of 1461 (non-empty = 553)
Window size = 535 out of 1461 (non-empty = 553)
Window size = 536 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 537 out of 1461 (non-empty = 553)
Window size = 538 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 539 out of 1461 (non-empty = 553)
Window size = 540 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 541 out of 1461 (non-empty = 553)
Window size = 542 out of 1461 (non-empty = 553)
Window size = 543 out of 1461 (non-empty = 553)
Window size = 544 out of 1461 (non-empty = 553)
Window size = 545 out of 1461 (non-empty = 553)
Window size = 546 out of 1461 (non-empty = 553)
Window size = 547 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 548 out of 1461 (non-empty = 553)
Window size = 549 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 550 out of 1461 (non-empty = 553)
Window size = 551 out of 1461 (non-empty = 553)
Window size = 552 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 553 out of 1461 (non-empty = 553)
Window size = 554 out of 1461 (non-empty = 553)
Window size = 555 out of 1461 (non-empty = 553)
Window size = 556 out of 1461 (non-empty = 553)
Window size = 557 out of 1461 (non-empty = 553)
Window size = 558 out of 1461 (non-empty = 553)
Window size = 559 out of 1461 (non-empty = 553)
Window size = 560 out of 1461 (non-empty = 553)
Window size = 561 out of 1461 (non-empty = 553)
Window size = 562 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 563 out of 1461 (non-empty = 553)
Window size = 564 out of 1461 (non-empty = 553)
Window size = 565 out of 1461 (non-empty = 553)
Window size = 566 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 567 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 568 out of 1461 (non-empty = 553)
Window size = 569 out of 1461 (non-empty = 553)
Window size = 570 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 571 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 572 out of 1461 (non-empty = 553)
Window size = 573 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 574 out of 1461 (non-empty = 553)
Window size = 575 out of 1461 (non-empty = 553)
Window size = 576 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 577 out of 1461 (non-empty = 553)
Window size = 578 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 579 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 580 out of 1461 (non-empty = 553)
Window size = 581 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 582 out of 1461 (non-empty = 553)
Window size = 583 out of 1461 (non-empty = 553)
Window size = 584 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 585 out of 1461 (non-empty = 553)
Window size = 586 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 587 out of 1461 (non-empty = 553)
Window size = 588 out of 1461 (non-empty = 553)
Window size = 589 out of 1461 (non-empty = 553)
Window size = 590 out of 1461 (non-empty = 553)
Window size = 591 out of 1461 (non-empty = 553)
Window size = 592 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 593 out of 1461 (non-empty = 553)
Window size = 594 out of 1461 (non-empty = 553)
Window size = 595 out of 1461 (non-empty = 553)
Window size = 596 out of 1461 (non-empty = 553)
Window size = 597 out of 1461 (non-empty = 553)
Window size = 598 out of 1461 (non-empty = 553)
Window size = 599 out of 1461 (non-empty = 553)
Window size = 600 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 601 out of 1461 (non-empty = 553)
Window size = 602 out of 1461 (non-empty = 553)
Window size = 603 out of 1461 (non-empty = 553)
Window size = 604 out of 1461 (non-empty = 553)
Window size = 605 out of 1461 (non-empty = 553)
Window size = 606 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 607 out of 1461 (non-empty = 553)
Window size = 608 out of 1461 (non-empty = 553)
Window size = 609 out of 1461 (non-empty = 553)
Window size = 610 out of 1461 (non-empty = 553)
Window size = 611 out of 1461 (non-empty = 553)
Window size = 612 out of 1461 (non-empty = 553)
Window size = 613 out of 1461 (non-empty = 553)
Window size = 614 out of 1461 (non-empty = 553)
Window size = 615 out of 1461 (non-empty = 553)
Window size = 616 out of 1461 (non-empty = 553)
Window size = 617 out of 1461 (non-empty = 553)
Window size = 618 out of 1461 (non-empty = 553)
Window size = 619 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 620 out of 1461 (non-empty = 553)
Window size = 621 out of 1461 (non-empty = 553)
Window size = 622 out of 1461 (non-empty = 553)
Window size = 623 out of 1461 (non-empty = 553)
Window size = 624 out of 1461 (non-empty = 553)
Window size = 625 out of 1461 (non-empty = 553)
Window size = 626 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 627 out of 1461 (non-empty = 553)
Window size = 628 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 629 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 630 out of 1461 (non-empty = 553)
Window size = 631 out of 1461 (non-empty = 553)
Window size = 632 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 633 out of 1461 (non-empty = 553)
Window size = 634 out of 1461 (non-empty = 553)
Window size = 635 out of 1461 (non-empty = 553)
Window size = 636 out of 1461 (non-empty = 553)
Window size = 637 out of 1461 (non-empty = 553)
Window size = 638 out of 1461 (non-empty = 553)
Window size = 639 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 640 out of 1461 (non-empty = 553)
Window size = 641 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 642 out of 1461 (non-empty = 553)
Window size = 643 out of 1461 (non-empty = 553)
Window size = 644 out of 1461 (non-empty = 553)
Window size = 645 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 646 out of 1461 (non-empty = 553)
Window size = 647 out of 1461 (non-empty = 553)
Window size = 648 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 649 out of 1461 (non-empty = 553)
Window size = 650 out of 1461 (non-empty = 553)
Window size = 651 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 652 out of 1461 (non-empty = 553)
Window size = 653 out of 1461 (non-empty = 553)
Window size = 654 out of 1461 (non-empty = 553)
Window size = 655 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 656 out of 1461 (non-empty = 553)
Window size = 657 out of 1461 (non-empty = 553)
Window size = 658 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 659 out of 1461 (non-empty = 553)
Window size = 660 out of 1461 (non-empty = 553)
Window size = 661 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 662 out of 1461 (non-empty = 553)
Window size = 663 out of 1461 (non-empty = 553)
Window size = 664 out of 1461 (non-empty = 553)
Window size = 665 out of 1461 (non-empty = 553)
Window size = 666 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 667 out of 1461 (non-empty = 553)
Window size = 668 out of 1461 (non-empty = 553)
Window size = 669 out of 1461 (non-empty = 553)
Window size = 670 out of 1461 (non-empty = 553)
Window size = 671 out of 1461 (non-empty = 553)
Window size = 672 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 673 out of 1461 (non-empty = 553)
Window size = 674 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 675 out of 1461 (non-empty = 553)
Window size = 676 out of 1461 (non-empty = 553)
Window size = 677 out of 1461 (non-empty = 553)
Window size = 678 out of 1461 (non-empty = 553)
Window size = 679 out of 1461 (non-empty = 553)
Window size = 680 out of 1461 (non-empty = 553)
Window size = 681 out of 1461 (non-empty = 553)
Window size = 682 out of 1461 (non-empty = 553)
Window size = 683 out of 1461 (non-empty = 553)
Window size = 684 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 685 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 686 out of 1461 (non-empty = 553)
Window size = 687 out of 1461 (non-empty = 553)
Window size = 688 out of 1461 (non-empty = 553)
Window size = 689 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 690 out of 1461 (non-empty = 553)
Window size = 691 out of 1461 (non-empty = 553)
Window size = 692 out of 1461 (non-empty = 553)
Window size = 693 out of 1461 (non-empty = 553)
Window size = 694 out of 1461 (non-empty = 553)
Window size = 695 out of 1461 (non-empty = 553)
Window size = 696 out of 1461 (non-empty = 553)
Window size = 697 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 698 out of 1461 (non-empty = 553)
Window size = 699 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 700 out of 1461 (non-empty = 553)
Window size = 701 out of 1461 (non-empty = 553)
Window size = 702 out of 1461 (non-empty = 553)
Window size = 703 out of 1461 (non-empty = 553)
Window size = 704 out of 1461 (non-empty = 553)
Window size = 705 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 706 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 707 out of 1461 (non-empty = 553)
Window size = 708 out of 1461 (non-empty = 553)
Window size = 709 out of 1461 (non-empty = 553)
Window size = 710 out of 1461 (non-empty = 553)
Window size = 711 out of 1461 (non-empty = 553)
Window size = 712 out of 1461 (non-empty = 553)
Window size = 713 out of 1461 (non-empty = 553)
Window size = 714 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 715 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 716 out of 1461 (non-empty = 553)
Window size = 717 out of 1461 (non-empty = 553)
Window size = 718 out of 1461 (non-empty = 553)
Window size = 719 out of 1461 (non-empty = 553)
Window size = 720 out of 1461 (non-empty = 553)
Window size = 721 out of 1461 (non-empty = 553)
Window size = 722 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 723 out of 1461 (non-empty = 553)
Window size = 724 out of 1461 (non-empty = 553)
Window size = 725 out of 1461 (non-empty = 553)
Window size = 726 out of 1461 (non-empty = 553)
Window size = 727 out of 1461 (non-empty = 553)
Window size = 728 out of 1461 (non-empty = 553)
Window size = 729 out of 1461 (non-empty = 553)
Window size = 730 out of 1461 (non-empty = 553)
Window size = 731 out of 1461 (non-empty = 553)
Window size = 732 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 733 out of 1461 (non-empty = 553)
Window size = 734 out of 1461 (non-empty = 553)
Window size = 735 out of 1461 (non-empty = 553)
Window size = 736 out of 1461 (non-empty = 553)
Window size = 737 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 738 out of 1461 (non-empty = 553)
Window size = 739 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 740 out of 1461 (non-empty = 553)
Window size = 741 out of 1461 (non-empty = 553)
Window size = 742 out of 1461 (non-empty = 553)
Window size = 743 out of 1461 (non-empty = 553)
Window size = 744 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 745 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 746 out of 1461 (non-empty = 553)
Window size = 747 out of 1461 (non-empty = 553)
Window size = 748 out of 1461 (non-empty = 553)
Window size = 749 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 750 out of 1461 (non-empty = 553)
Window size = 751 out of 1461 (non-empty = 553)
Window size = 752 out of 1461 (non-empty = 553)
Window size = 753 out of 1461 (non-empty = 553)
Window size = 754 out of 1461 (non-empty = 553)
Window size = 755 out of 1461 (non-empty = 553)
Window size = 756 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 757 out of 1461 (non-empty = 553)
Window size = 758 out of 1461 (non-empty = 553)
Window size = 759 out of 1461 (non-empty = 553)
Window size = 760 out of 1461 (non-empty = 553)
Window size = 761 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 762 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 763 out of 1461 (non-empty = 553)
Window size = 764 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 765 out of 1461 (non-empty = 553)
Window size = 766 out of 1461 (non-empty = 553)
Window size = 767 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 768 out of 1461 (non-empty = 553)
Window size = 769 out of 1461 (non-empty = 553)
Window size = 770 out of 1461 (non-empty = 553)
Window size = 771 out of 1461 (non-empty = 553)
Window size = 772 out of 1461 (non-empty = 553)
Window size = 773 out of 1461 (non-empty = 553)
Window size = 774 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 775 out of 1461 (non-empty = 553)
Window size = 776 out of 1461 (non-empty = 553)
Window size = 777 out of 1461 (non-empty = 553)
Window size = 778 out of 1461 (non-empty = 553)
Window size = 779 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 780 out of 1461 (non-empty = 553)
Window size = 781 out of 1461 (non-empty = 553)
Window size = 782 out of 1461 (non-empty = 553)
Window size = 783 out of 1461 (non-empty = 553)
Window size = 784 out of 1461 (non-empty = 553)
Window size = 785 out of 1461 (non-empty = 553)
Window size = 786 out of 1461 (non-empty = 553)
Window size = 787 out of 1461 (non-empty = 553)
Window size = 788 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 789 out of 1461 (non-empty = 553)
Window size = 790 out of 1461 (non-empty = 553)
Window size = 791 out of 1461 (non-empty = 553)
Window size = 792 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 793 out of 1461 (non-empty = 553)
Window size = 794 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 795 out of 1461 (non-empty = 553)
Window size = 796 out of 1461 (non-empty = 553)
Window size = 797 out of 1461 (non-empty = 553)
Window size = 798 out of 1461 (non-empty = 553)
Window size = 799 out of 1461 (non-empty = 553)
Window size = 800 out of 1461 (non-empty = 553)
Window size = 801 out of 1461 (non-empty = 553)
Window size = 802 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 803 out of 1461 (non-empty = 553)
Window size = 804 out of 1461 (non-empty = 553)
Window size = 805 out of 1461 (non-empty = 553)
Window size = 806 out of 1461 (non-empty = 553)
Window size = 807 out of 1461 (non-empty = 553)
Window size = 808 out of 1461 (non-empty = 553)
Window size = 809 out of 1461 (non-empty = 553)
Window size = 810 out of 1461 (non-empty = 553)
Window size = 811 out of 1461 (non-empty = 553)
Window size = 812 out of 1461 (non-empty = 553)
Window size = 813 out of 1461 (non-empty = 553)
Window size = 814 out of 1461 (non-empty = 553)
Window size = 815 out of 1461 (non-empty = 553)
Window size = 816 out of 1461 (non-empty = 553)
Window size = 817 out of 1461 (non-empty = 553)
Window size = 818 out of 1461 (non-empty = 553)
Window size = 819 out of 1461 (non-empty = 553)
Window size = 820 out of 1461 (non-empty = 553)
Window size = 821 out of 1461 (non-empty = 553)
Window size = 822 out of 1461 (non-empty = 553)
Window size = 823 out of 1461 (non-empty = 553)
Window size = 824 out of 1461 (non-empty = 553)
Window size = 825 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 826 out of 1461 (non-empty = 553)
Window size = 827 out of 1461 (non-empty = 553)
Window size = 828 out of 1461 (non-empty = 553)
Window size = 829 out of 1461 (non-empty = 553)
Window size = 830 out of 1461 (non-empty = 553)
Window size = 831 out of 1461 (non-empty = 553)
Window size = 832 out of 1461 (non-empty = 553)
Window size = 833 out of 1461 (non-empty = 553)
Window size = 834 out of 1461 (non-empty = 553)
Window size = 835 out of 1461 (non-empty = 553)
Window size = 836 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 837 out of 1461 (non-empty = 553)
Window size = 838 out of 1461 (non-empty = 553)
Window size = 839 out of 1461 (non-empty = 553)
Window size = 840 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 841 out of 1461 (non-empty = 553)
Window size = 842 out of 1461 (non-empty = 553)
Window size = 843 out of 1461 (non-empty = 553)
Window size = 844 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 845 out of 1461 (non-empty = 553)
Window size = 846 out of 1461 (non-empty = 553)
Window size = 847 out of 1461 (non-empty = 553)
Window size = 848 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 849 out of 1461 (non-empty = 553)
Window size = 850 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 851 out of 1461 (non-empty = 553)
Window size = 852 out of 1461 (non-empty = 553)
Window size = 853 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 854 out of 1461 (non-empty = 553)
Window size = 855 out of 1461 (non-empty = 553)
Window size = 856 out of 1461 (non-empty = 553)
Window size = 857 out of 1461 (non-empty = 553)
Window size = 858 out of 1461 (non-empty = 553)
Window size = 859 out of 1461 (non-empty = 553)
Window size = 860 out of 1461 (non-empty = 553)
Window size = 861 out of 1461 (non-empty = 553)
Window size = 862 out of 1461 (non-empty = 553)
Window size = 863 out of 1461 (non-empty = 553)
Window size = 864 out of 1461 (non-empty = 553)
Window size = 865 out of 1461 (non-empty = 553)
Window size = 866 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 867 out of 1461 (non-empty = 553)
Window size = 868 out of 1461 (non-empty = 553)
Window size = 869 out of 1461 (non-empty = 553)
Window size = 870 out of 1461 (non-empty = 553)
Window size = 871 out of 1461 (non-empty = 553)
Window size = 872 out of 1461 (non-empty = 553)
Window size = 873 out of 1461 (non-empty = 553)
Window size = 874 out of 1461 (non-empty = 553)
Window size = 875 out of 1461 (non-empty = 553)
Window size = 876 out of 1461 (non-empty = 553)
Window size = 877 out of 1461 (non-empty = 553)
Window size = 878 out of 1461 (non-empty = 553)
Window size = 879 out of 1461 (non-empty = 553)
Window size = 880 out of 1461 (non-empty = 553)
Window size = 881 out of 1461 (non-empty = 553)
Window size = 882 out of 1461 (non-empty = 553)
Window size = 883 out of 1461 (non-empty = 553)
Window size = 884 out of 1461 (non-empty = 553)
Window size = 885 out of 1461 (non-empty = 553)
Window size = 886 out of 1461 (non-empty = 553)
Window size = 887 out of 1461 (non-empty = 553)
Window size = 888 out of 1461 (non-empty = 553)
Window size = 889 out of 1461 (non-empty = 553)
Window size = 890 out of 1461 (non-empty = 553)
Window size = 891 out of 1461 (non-empty = 553)
Window size = 892 out of 1461 (non-empty = 553)
Window size = 893 out of 1461 (non-empty = 553)
Window size = 894 out of 1461 (non-empty = 553)
Window size = 895 out of 1461 (non-empty = 553)
Window size = 896 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 897 out of 1461 (non-empty = 553)
Window size = 898 out of 1461 (non-empty = 553)
Window size = 899 out of 1461 (non-empty = 553)
Window size = 900 out of 1461 (non-empty = 553)
Window size = 901 out of 1461 (non-empty = 553)
Window size = 902 out of 1461 (non-empty = 553)
Window size = 903 out of 1461 (non-empty = 553)
Window size = 904 out of 1461 (non-empty = 553)
Window size = 905 out of 1461 (non-empty = 553)
Window size = 906 out of 1461 (non-empty = 553)
Window size = 907 out of 1461 (non-empty = 553)
Window size = 908 out of 1461 (non-empty = 553)
Window size = 909 out of 1461 (non-empty = 553)
Window size = 910 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 911 out of 1461 (non-empty = 553)
Window size = 912 out of 1461 (non-empty = 553)
Window size = 913 out of 1461 (non-empty = 553)
Window size = 914 out of 1461 (non-empty = 553)
Window size = 915 out of 1461 (non-empty = 553)
Window size = 916 out of 1461 (non-empty = 553)
Window size = 917 out of 1461 (non-empty = 553)
Window size = 918 out of 1461 (non-empty = 553)
Window size = 919 out of 1461 (non-empty = 553)
Window size = 920 out of 1461 (non-empty = 553)
Window size = 921 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 922 out of 1461 (non-empty = 553)
Window size = 923 out of 1461 (non-empty = 553)
Window size = 924 out of 1461 (non-empty = 553)
Window size = 925 out of 1461 (non-empty = 553)
Window size = 926 out of 1461 (non-empty = 553)
Window size = 927 out of 1461 (non-empty = 553)
Window size = 928 out of 1461 (non-empty = 553)
Window size = 929 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 930 out of 1461 (non-empty = 553)
Window size = 931 out of 1461 (non-empty = 553)
Window size = 932 out of 1461 (non-empty = 553)
Window size = 933 out of 1461 (non-empty = 553)
Window size = 934 out of 1461 (non-empty = 553)
Window size = 935 out of 1461 (non-empty = 553)
Window size = 936 out of 1461 (non-empty = 553)
Window size = 937 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 938 out of 1461 (non-empty = 553)
Window size = 939 out of 1461 (non-empty = 553)
Window size = 940 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 941 out of 1461 (non-empty = 553)
Window size = 942 out of 1461 (non-empty = 553)
Window size = 943 out of 1461 (non-empty = 553)
Window size = 944 out of 1461 (non-empty = 553)
Window size = 945 out of 1461 (non-empty = 553)
Window size = 946 out of 1461 (non-empty = 553)
Window size = 947 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 948 out of 1461 (non-empty = 553)
Window size = 949 out of 1461 (non-empty = 553)
Window size = 950 out of 1461 (non-empty = 553)
Window size = 951 out of 1461 (non-empty = 553)
Window size = 952 out of 1461 (non-empty = 553)
Window size = 953 out of 1461 (non-empty = 553)
Window size = 954 out of 1461 (non-empty = 553)
Window size = 955 out of 1461 (non-empty = 553)
Window size = 956 out of 1461 (non-empty = 553)
Window size = 957 out of 1461 (non-empty = 553)
Window size = 958 out of 1461 (non-empty = 553)
Window size = 959 out of 1461 (non-empty = 553)
Window size = 960 out of 1461 (non-empty = 553)
Window size = 961 out of 1461 (non-empty = 553)
Window size = 962 out of 1461 (non-empty = 553)
Window size = 963 out of 1461 (non-empty = 553)
Window size = 964 out of 1461 (non-empty = 553)
Window size = 965 out of 1461 (non-empty = 553)
Window size = 966 out of 1461 (non-empty = 553)
Window size = 967 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 968 out of 1461 (non-empty = 553)
Window size = 969 out of 1461 (non-empty = 553)
Window size = 970 out of 1461 (non-empty = 553)
Window size = 971 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 972 out of 1461 (non-empty = 553)
Window size = 973 out of 1461 (non-empty = 553)
Window size = 974 out of 1461 (non-empty = 553)
Window size = 975 out of 1461 (non-empty = 553)
Window size = 976 out of 1461 (non-empty = 553)
Window size = 977 out of 1461 (non-empty = 553)
Window size = 978 out of 1461 (non-empty = 553)
Window size = 979 out of 1461 (non-empty = 553)
Window size = 980 out of 1461 (non-empty = 553)
Window size = 981 out of 1461 (non-empty = 553)
Window size = 982 out of 1461 (non-empty = 553)
Window size = 983 out of 1461 (non-empty = 553)
Window size = 984 out of 1461 (non-empty = 553)
Window size = 985 out of 1461 (non-empty = 553)
Window size = 986 out of 1461 (non-empty = 553)
Window size = 987 out of 1461 (non-empty = 553)
Window size = 988 out of 1461 (non-empty = 553)
Window size = 989 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 990 out of 1461 (non-empty = 553)
Window size = 991 out of 1461 (non-empty = 553)
Window size = 992 out of 1461 (non-empty = 553)
Window size = 993 out of 1461 (non-empty = 553)
Window size = 994 out of 1461 (non-empty = 553)
Window size = 995 out of 1461 (non-empty = 553)
Window size = 996 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 997 out of 1461 (non-empty = 553)
Window size = 998 out of 1461 (non-empty = 553)
Window size = 999 out of 1461 (non-empty = 553)
Window size = 1000 out of 1461 (non-empty = 553)
Window size = 1001 out of 1461 (non-empty = 553)
Window size = 1002 out of 1461 (non-empty = 553)
Window size = 1003 out of 1461 (non-empty = 553)
Window size = 1004 out of 1461 (non-empty = 553)
Window size = 1005 out of 1461 (non-empty = 553)
Window size = 1006 out of 1461 (non-empty = 553)
Window size = 1007 out of 1461 (non-empty = 553)
Window size = 1008 out of 1461 (non-empty = 553)
Window size = 1009 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1010 out of 1461 (non-empty = 553)
Window size = 1011 out of 1461 (non-empty = 553)
Window size = 1012 out of 1461 (non-empty = 553)
Window size = 1013 out of 1461 (non-empty = 553)
Window size = 1014 out of 1461 (non-empty = 553)
Window size = 1015 out of 1461 (non-empty = 553)
Window size = 1016 out of 1461 (non-empty = 553)
Window size = 1017 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1018 out of 1461 (non-empty = 553)
Window size = 1019 out of 1461 (non-empty = 553)
Window size = 1020 out of 1461 (non-empty = 553)
Window size = 1021 out of 1461 (non-empty = 553)
Window size = 1022 out of 1461 (non-empty = 553)
Window size = 1023 out of 1461 (non-empty = 553)
Window size = 1024 out of 1461 (non-empty = 553)
Window size = 1025 out of 1461 (non-empty = 553)
Window size = 1026 out of 1461 (non-empty = 553)
Window size = 1027 out of 1461 (non-empty = 553)
Window size = 1028 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1029 out of 1461 (non-empty = 553)
Window size = 1030 out of 1461 (non-empty = 553)
Window size = 1031 out of 1461 (non-empty = 553)
Window size = 1032 out of 1461 (non-empty = 553)
Window size = 1033 out of 1461 (non-empty = 553)
Window size = 1034 out of 1461 (non-empty = 553)
Window size = 1035 out of 1461 (non-empty = 553)
Window size = 1036 out of 1461 (non-empty = 553)
Window size = 1037 out of 1461 (non-empty = 553)
Window size = 1038 out of 1461 (non-empty = 553)
Window size = 1039 out of 1461 (non-empty = 553)
Window size = 1040 out of 1461 (non-empty = 553)
Window size = 1041 out of 1461 (non-empty = 553)
Window size = 1042 out of 1461 (non-empty = 553)
Window size = 1043 out of 1461 (non-empty = 553)
Window size = 1044 out of 1461 (non-empty = 553)
Window size = 1045 out of 1461 (non-empty = 553)
Window size = 1046 out of 1461 (non-empty = 553)
Window size = 1047 out of 1461 (non-empty = 553)
Window size = 1048 out of 1461 (non-empty = 553)
Window size = 1049 out of 1461 (non-empty = 553)
Window size = 1050 out of 1461 (non-empty = 553)
Window size = 1051 out of 1461 (non-empty = 553)
Window size = 1052 out of 1461 (non-empty = 553)
Window size = 1053 out of 1461 (non-empty = 553)
Window size = 1054 out of 1461 (non-empty = 553)
Window size = 1055 out of 1461 (non-empty = 553)
Window size = 1056 out of 1461 (non-empty = 553)
Window size = 1057 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1058 out of 1461 (non-empty = 553)
Window size = 1059 out of 1461 (non-empty = 553)
Window size = 1060 out of 1461 (non-empty = 553)
Window size = 1061 out of 1461 (non-empty = 553)
Window size = 1062 out of 1461 (non-empty = 553)
Window size = 1063 out of 1461 (non-empty = 553)
Window size = 1064 out of 1461 (non-empty = 553)
Window size = 1065 out of 1461 (non-empty = 553)
Window size = 1066 out of 1461 (non-empty = 553)
Window size = 1067 out of 1461 (non-empty = 553)
Window size = 1068 out of 1461 (non-empty = 553)
Window size = 1069 out of 1461 (non-empty = 553)
Window size = 1070 out of 1461 (non-empty = 553)
Window size = 1071 out of 1461 (non-empty = 553)
Window size = 1072 out of 1461 (non-empty = 553)
Window size = 1073 out of 1461 (non-empty = 553)
Window size = 1074 out of 1461 (non-empty = 553)
Window size = 1075 out of 1461 (non-empty = 553)
Window size = 1076 out of 1461 (non-empty = 553)
Window size = 1077 out of 1461 (non-empty = 553)
Window size = 1078 out of 1461 (non-empty = 553)
Window size = 1079 out of 1461 (non-empty = 553)
Window size = 1080 out of 1461 (non-empty = 553)
Window size = 1081 out of 1461 (non-empty = 553)
Window size = 1082 out of 1461 (non-empty = 553)
Window size = 1083 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1084 out of 1461 (non-empty = 553)
Window size = 1085 out of 1461 (non-empty = 553)
Window size = 1086 out of 1461 (non-empty = 553)
Window size = 1087 out of 1461 (non-empty = 553)
Window size = 1088 out of 1461 (non-empty = 553)
Window size = 1089 out of 1461 (non-empty = 553)
Window size = 1090 out of 1461 (non-empty = 553)
Window size = 1091 out of 1461 (non-empty = 553)
Window size = 1092 out of 1461 (non-empty = 553)
Window size = 1093 out of 1461 (non-empty = 553)
Window size = 1094 out of 1461 (non-empty = 553)
Window size = 1095 out of 1461 (non-empty = 553)
Window size = 1096 out of 1461 (non-empty = 553)
Window size = 1097 out of 1461 (non-empty = 553)
Window size = 1098 out of 1461 (non-empty = 553)
Window size = 1099 out of 1461 (non-empty = 553)
Window size = 1100 out of 1461 (non-empty = 553)
Window size = 1101 out of 1461 (non-empty = 553)
Window size = 1102 out of 1461 (non-empty = 553)
Window size = 1103 out of 1461 (non-empty = 553)
Window size = 1104 out of 1461 (non-empty = 553)
Window size = 1105 out of 1461 (non-empty = 553)
Window size = 1106 out of 1461 (non-empty = 553)
Window size = 1107 out of 1461 (non-empty = 553)
Window size = 1108 out of 1461 (non-empty = 553)
Window size = 1109 out of 1461 (non-empty = 553)
Window size = 1110 out of 1461 (non-empty = 553)
Window size = 1111 out of 1461 (non-empty = 553)
Window size = 1112 out of 1461 (non-empty = 553)
Window size = 1113 out of 1461 (non-empty = 553)
Window size = 1114 out of 1461 (non-empty = 553)
Window size = 1115 out of 1461 (non-empty = 553)
Window size = 1116 out of 1461 (non-empty = 553)
Window size = 1117 out of 1461 (non-empty = 553)
Window size = 1118 out of 1461 (non-empty = 553)
Window size = 1119 out of 1461 (non-empty = 553)
Window size = 1120 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1121 out of 1461 (non-empty = 553)
Window size = 1122 out of 1461 (non-empty = 553)
Window size = 1123 out of 1461 (non-empty = 553)
Window size = 1124 out of 1461 (non-empty = 553)
Window size = 1125 out of 1461 (non-empty = 553)
Window size = 1126 out of 1461 (non-empty = 553)
Window size = 1127 out of 1461 (non-empty = 553)
Window size = 1128 out of 1461 (non-empty = 553)
Window size = 1129 out of 1461 (non-empty = 553)
Window size = 1130 out of 1461 (non-empty = 553)
Window size = 1131 out of 1461 (non-empty = 553)
Window size = 1132 out of 1461 (non-empty = 553)
Window size = 1133 out of 1461 (non-empty = 553)
Window size = 1134 out of 1461 (non-empty = 553)
Window size = 1135 out of 1461 (non-empty = 553)
Window size = 1136 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1137 out of 1461 (non-empty = 553)
Window size = 1138 out of 1461 (non-empty = 553)
Window size = 1139 out of 1461 (non-empty = 553)
Window size = 1140 out of 1461 (non-empty = 553)
Window size = 1141 out of 1461 (non-empty = 553)
Window size = 1142 out of 1461 (non-empty = 553)
Window size = 1143 out of 1461 (non-empty = 553)
Window size = 1144 out of 1461 (non-empty = 553)
Window size = 1145 out of 1461 (non-empty = 553)
Window size = 1146 out of 1461 (non-empty = 553)
Window size = 1147 out of 1461 (non-empty = 553)
Window size = 1148 out of 1461 (non-empty = 553)
Window size = 1149 out of 1461 (non-empty = 553)
Window size = 1150 out of 1461 (non-empty = 553)
Window size = 1151 out of 1461 (non-empty = 553)
Window size = 1152 out of 1461 (non-empty = 553)
Window size = 1153 out of 1461 (non-empty = 553)
Window size = 1154 out of 1461 (non-empty = 553)
Window size = 1155 out of 1461 (non-empty = 553)
Window size = 1156 out of 1461 (non-empty = 553)
Window size = 1157 out of 1461 (non-empty = 553)
Window size = 1158 out of 1461 (non-empty = 553)
Window size = 1159 out of 1461 (non-empty = 553)
Window size = 1160 out of 1461 (non-empty = 553)
Window size = 1161 out of 1461 (non-empty = 553)
Window size = 1162 out of 1461 (non-empty = 553)
Window size = 1163 out of 1461 (non-empty = 553)
Window size = 1164 out of 1461 (non-empty = 553)
Window size = 1165 out of 1461 (non-empty = 553)
Window size = 1166 out of 1461 (non-empty = 553)
Window size = 1167 out of 1461 (non-empty = 553)
Window size = 1168 out of 1461 (non-empty = 553)
Window size = 1169 out of 1461 (non-empty = 553)
Window size = 1170 out of 1461 (non-empty = 553)
Window size = 1171 out of 1461 (non-empty = 553)
Window size = 1172 out of 1461 (non-empty = 553)
Window size = 1173 out of 1461 (non-empty = 553)
Window size = 1174 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1175 out of 1461 (non-empty = 553)
Window size = 1176 out of 1461 (non-empty = 553)
Window size = 1177 out of 1461 (non-empty = 553)
Window size = 1178 out of 1461 (non-empty = 553)
Window size = 1179 out of 1461 (non-empty = 553)
Window size = 1180 out of 1461 (non-empty = 553)
Window size = 1181 out of 1461 (non-empty = 553)
Window size = 1182 out of 1461 (non-empty = 553)
Window size = 1183 out of 1461 (non-empty = 553)
Window size = 1184 out of 1461 (non-empty = 553)
Window size = 1185 out of 1461 (non-empty = 553)
Window size = 1186 out of 1461 (non-empty = 553)
Window size = 1187 out of 1461 (non-empty = 553)
Window size = 1188 out of 1461 (non-empty = 553)
Window size = 1189 out of 1461 (non-empty = 553)
Window size = 1190 out of 1461 (non-empty = 553)
Window size = 1191 out of 1461 (non-empty = 553)
Window size = 1192 out of 1461 (non-empty = 553)
Window size = 1193 out of 1461 (non-empty = 553)
Window size = 1194 out of 1461 (non-empty = 553)
Window size = 1195 out of 1461 (non-empty = 553)
Window size = 1196 out of 1461 (non-empty = 553)
Window size = 1197 out of 1461 (non-empty = 553)
Window size = 1198 out of 1461 (non-empty = 553)
Window size = 1199 out of 1461 (non-empty = 553)
Window size = 1200 out of 1461 (non-empty = 553)
Window size = 1201 out of 1461 (non-empty = 553)
Window size = 1202 out of 1461 (non-empty = 553)
Window size = 1203 out of 1461 (non-empty = 553)
Window size = 1204 out of 1461 (non-empty = 553)
Window size = 1205 out of 1461 (non-empty = 553)
Window size = 1206 out of 1461 (non-empty = 553)
Window size = 1207 out of 1461 (non-empty = 553)
Window size = 1208 out of 1461 (non-empty = 553)
Window size = 1209 out of 1461 (non-empty = 553)
Window size = 1210 out of 1461 (non-empty = 553)
Window size = 1211 out of 1461 (non-empty = 553)
Window size = 1212 out of 1461 (non-empty = 553)
Window size = 1213 out of 1461 (non-empty = 553)
Window size = 1214 out of 1461 (non-empty = 553)
Window size = 1215 out of 1461 (non-empty = 553)
Window size = 1216 out of 1461 (non-empty = 553)
Window size = 1217 out of 1461 (non-empty = 553)
Window size = 1218 out of 1461 (non-empty = 553)
Window size = 1219 out of 1461 (non-empty = 553)
Window size = 1220 out of 1461 (non-empty = 553)
Window size = 1221 out of 1461 (non-empty = 553)
Window size = 1222 out of 1461 (non-empty = 553)
Window size = 1223 out of 1461 (non-empty = 553)
Window size = 1224 out of 1461 (non-empty = 553)
Window size = 1225 out of 1461 (non-empty = 553)
Window size = 1226 out of 1461 (non-empty = 553)
Window size = 1227 out of 1461 (non-empty = 553)
Window size = 1228 out of 1461 (non-empty = 553)
Window size = 1229 out of 1461 (non-empty = 553)
Window size = 1230 out of 1461 (non-empty = 553)
Window size = 1231 out of 1461 (non-empty = 553)
Window size = 1232 out of 1461 (non-empty = 553)
Window size = 1233 out of 1461 (non-empty = 553)
Window size = 1234 out of 1461 (non-empty = 553)
Window size = 1235 out of 1461 (non-empty = 553)
Window size = 1236 out of 1461 (non-empty = 553)
Window size = 1237 out of 1461 (non-empty = 553)
Window size = 1238 out of 1461 (non-empty = 553)
Window size = 1239 out of 1461 (non-empty = 553)
Window size = 1240 out of 1461 (non-empty = 553)
Window size = 1241 out of 1461 (non-empty = 553)
Window size = 1242 out of 1461 (non-empty = 553)
Window size = 1243 out of 1461 (non-empty = 553)
Window size = 1244 out of 1461 (non-empty = 553)
Window size = 1245 out of 1461 (non-empty = 553)
Window size = 1246 out of 1461 (non-empty = 553)
Window size = 1247 out of 1461 (non-empty = 553)
Window size = 1248 out of 1461 (non-empty = 553)
Window size = 1249 out of 1461 (non-empty = 553)
Window size = 1250 out of 1461 (non-empty = 553)
Window size = 1251 out of 1461 (non-empty = 553)
Window size = 1252 out of 1461 (non-empty = 553)
Window size = 1253 out of 1461 (non-empty = 553)
Window size = 1254 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1255 out of 1461 (non-empty = 553)
Window size = 1256 out of 1461 (non-empty = 553)
Window size = 1257 out of 1461 (non-empty = 553)
Window size = 1258 out of 1461 (non-empty = 553)
Window size = 1259 out of 1461 (non-empty = 553)
Window size = 1260 out of 1461 (non-empty = 553)
Window size = 1261 out of 1461 (non-empty = 553)
Window size = 1262 out of 1461 (non-empty = 553)
Window size = 1263 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1264 out of 1461 (non-empty = 553)
Window size = 1265 out of 1461 (non-empty = 553)
Window size = 1266 out of 1461 (non-empty = 553)
Window size = 1267 out of 1461 (non-empty = 553)
Window size = 1268 out of 1461 (non-empty = 553)
Window size = 1269 out of 1461 (non-empty = 553)
Window size = 1270 out of 1461 (non-empty = 553)
Window size = 1271 out of 1461 (non-empty = 553)
Window size = 1272 out of 1461 (non-empty = 553)
Window size = 1273 out of 1461 (non-empty = 553)
Window size = 1274 out of 1461 (non-empty = 553)
Window size = 1275 out of 1461 (non-empty = 553)
Window size = 1276 out of 1461 (non-empty = 553)
Window size = 1277 out of 1461 (non-empty = 553)
Window size = 1278 out of 1461 (non-empty = 553)
Window size = 1279 out of 1461 (non-empty = 553)
Window size = 1280 out of 1461 (non-empty = 553)
Window size = 1281 out of 1461 (non-empty = 553)
Window size = 1282 out of 1461 (non-empty = 553)
Window size = 1283 out of 1461 (non-empty = 553)
Window size = 1284 out of 1461 (non-empty = 553)
Window size = 1285 out of 1461 (non-empty = 553)
Window size = 1286 out of 1461 (non-empty = 553)
Window size = 1287 out of 1461 (non-empty = 553)
Window size = 1288 out of 1461 (non-empty = 553)
Window size = 1289 out of 1461 (non-empty = 553)
Window size = 1290 out of 1461 (non-empty = 553)
Window size = 1291 out of 1461 (non-empty = 553)
Window size = 1292 out of 1461 (non-empty = 553)
Window size = 1293 out of 1461 (non-empty = 553)
Window size = 1294 out of 1461 (non-empty = 553)
Window size = 1295 out of 1461 (non-empty = 553)
Window size = 1296 out of 1461 (non-empty = 553)
Window size = 1297 out of 1461 (non-empty = 553)
Window size = 1298 out of 1461 (non-empty = 553)
Window size = 1299 out of 1461 (non-empty = 553)
Window size = 1300 out of 1461 (non-empty = 553)
Window size = 1301 out of 1461 (non-empty = 553)
Window size = 1302 out of 1461 (non-empty = 553)
Window size = 1303 out of 1461 (non-empty = 553)
Window size = 1304 out of 1461 (non-empty = 553)
Window size = 1305 out of 1461 (non-empty = 553)
Window size = 1306 out of 1461 (non-empty = 553)
Window size = 1307 out of 1461 (non-empty = 553)
Window size = 1308 out of 1461 (non-empty = 553)
Window size = 1309 out of 1461 (non-empty = 553)
Window size = 1310 out of 1461 (non-empty = 553)
Window size = 1311 out of 1461 (non-empty = 553)
Window size = 1312 out of 1461 (non-empty = 553)
Window size = 1313 out of 1461 (non-empty = 553)
Window size = 1314 out of 1461 (non-empty = 553)
Window size = 1315 out of 1461 (non-empty = 553)
Window size = 1316 out of 1461 (non-empty = 553)
Window size = 1317 out of 1461 (non-empty = 553)
Window size = 1318 out of 1461 (non-empty = 553)
Window size = 1319 out of 1461 (non-empty = 553)
Window size = 1320 out of 1461 (non-empty = 553)
Window size = 1321 out of 1461 (non-empty = 553)
Window size = 1322 out of 1461 (non-empty = 553)
Window size = 1323 out of 1461 (non-empty = 553)
Window size = 1324 out of 1461 (non-empty = 553)
Window size = 1325 out of 1461 (non-empty = 553)
Window size = 1326 out of 1461 (non-empty = 553)
Window size = 1327 out of 1461 (non-empty = 553)
Window size = 1328 out of 1461 (non-empty = 553)
Window size = 1329 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1330 out of 1461 (non-empty = 553)
Window size = 1331 out of 1461 (non-empty = 553)
Window size = 1332 out of 1461 (non-empty = 553)
Window size = 1333 out of 1461 (non-empty = 553)
Window size = 1334 out of 1461 (non-empty = 553)
Window size = 1335 out of 1461 (non-empty = 553)
Window size = 1336 out of 1461 (non-empty = 553)
Window size = 1337 out of 1461 (non-empty = 553)
Window size = 1338 out of 1461 (non-empty = 553)
Window size = 1339 out of 1461 (non-empty = 553)
Window size = 1340 out of 1461 (non-empty = 553)
Window size = 1341 out of 1461 (non-empty = 553)
Window size = 1342 out of 1461 (non-empty = 553)
Window size = 1343 out of 1461 (non-empty = 553)
Window size = 1344 out of 1461 (non-empty = 553)
Window size = 1345 out of 1461 (non-empty = 553)
Window size = 1346 out of 1461 (non-empty = 553)
Window size = 1347 out of 1461 (non-empty = 553)
Window size = 1348 out of 1461 (non-empty = 553)
Window size = 1349 out of 1461 (non-empty = 553)
Window size = 1350 out of 1461 (non-empty = 553)
Window size = 1351 out of 1461 (non-empty = 553)
Window size = 1352 out of 1461 (non-empty = 553)
Window size = 1353 out of 1461 (non-empty = 553)
Window size = 1354 out of 1461 (non-empty = 553)
Window size = 1355 out of 1461 (non-empty = 553)
Window size = 1356 out of 1461 (non-empty = 553)
Window size = 1357 out of 1461 (non-empty = 553)
Window size = 1358 out of 1461 (non-empty = 553)
Window size = 1359 out of 1461 (non-empty = 553)
Window size = 1360 out of 1461 (non-empty = 553)
Window size = 1361 out of 1461 (non-empty = 553)
Window size = 1362 out of 1461 (non-empty = 553)
Window size = 1363 out of 1461 (non-empty = 553)
Window size = 1364 out of 1461 (non-empty = 553)
Window size = 1365 out of 1461 (non-empty = 553)
Window size = 1366 out of 1461 (non-empty = 553)
Window size = 1367 out of 1461 (non-empty = 553)
Window size = 1368 out of 1461 (non-empty = 553)
Window size = 1369 out of 1461 (non-empty = 553)
Window size = 1370 out of 1461 (non-empty = 553)
Window size = 1371 out of 1461 (non-empty = 553)
Window size = 1372 out of 1461 (non-empty = 553)
Window size = 1373 out of 1461 (non-empty = 553)
Window size = 1374 out of 1461 (non-empty = 553)
Window size = 1375 out of 1461 (non-empty = 553)
Window size = 1376 out of 1461 (non-empty = 553)
Window size = 1377 out of 1461 (non-empty = 553)
Window size = 1378 out of 1461 (non-empty = 553)
Window size = 1379 out of 1461 (non-empty = 553)
Window size = 1380 out of 1461 (non-empty = 553)
Window size = 1381 out of 1461 (non-empty = 553)
Window size = 1382 out of 1461 (non-empty = 553)
Window size = 1383 out of 1461 (non-empty = 553)
Window size = 1384 out of 1461 (non-empty = 553)
Window size = 1385 out of 1461 (non-empty = 553)
Window size = 1386 out of 1461 (non-empty = 553)
Window size = 1387 out of 1461 (non-empty = 553)
Window size = 1388 out of 1461 (non-empty = 553)
Window size = 1389 out of 1461 (non-empty = 553)
Window size = 1390 out of 1461 (non-empty = 553)
Window size = 1391 out of 1461 (non-empty = 553)
Window size = 1392 out of 1461 (non-empty = 553)
Window size = 1393 out of 1461 (non-empty = 553)
Window size = 1394 out of 1461 (non-empty = 553)
Window size = 1395 out of 1461 (non-empty = 553)
Window size = 1396 out of 1461 (non-empty = 553)
Window size = 1397 out of 1461 (non-empty = 553)
Window size = 1398 out of 1461 (non-empty = 553)
Window size = 1399 out of 1461 (non-empty = 553)
Window size = 1400 out of 1461 (non-empty = 553)
Window size = 1401 out of 1461 (non-empty = 553)
Window size = 1402 out of 1461 (non-empty = 553)
Window size = 1403 out of 1461 (non-empty = 553)
Window size = 1404 out of 1461 (non-empty = 553)
Window size = 1405 out of 1461 (non-empty = 553)
Window size = 1406 out of 1461 (non-empty = 553)
Window size = 1407 out of 1461 (non-empty = 553)
Window size = 1408 out of 1461 (non-empty = 553)
Window size = 1409 out of 1461 (non-empty = 553)
Window size = 1410 out of 1461 (non-empty = 553)
Window size = 1411 out of 1461 (non-empty = 553)
Conv:...............................................................................
Window size = 1412 out of 1461 (non-empty = 553)
Window size = 1413 out of 1461 (non-empty = 553)
Window size = 1414 out of 1461 (non-empty = 553)
Window size = 1415 out of 1461 (non-empty = 553)
Window size = 1416 out of 1461 (non-empty = 553)
Window size = 1417 out of 1461 (non-empty = 553)
Window size = 1418 out of 1461 (non-empty = 553)
Window size = 1419 out of 1461 (non-empty = 553)
Window size = 1420 out of 1461 (non-empty = 553)
Window size = 1421 out of 1461 (non-empty = 553)
Window size = 1422 out of 1461 (non-empty = 553)
Window size = 1423 out of 1461 (non-empty = 553)
Window size = 1424 out of 1461 (non-empty = 553)
Window size = 1425 out of 1461 (non-empty = 553)
Window size = 1426 out of 1461 (non-empty = 553)
Window size = 1427 out of 1461 (non-empty = 553)
Window size = 1428 out of 1461 (non-empty = 553)
Window size = 1429 out of 1461 (non-empty = 553)
Window size = 1430 out of 1461 (non-empty = 553)
Window size = 1431 out of 1461 (non-empty = 553)
Window size = 1432 out of 1461 (non-empty = 553)
Window size = 1433 out of 1461 (non-empty = 553)
Window size = 1434 out of 1461 (non-empty = 553)
Window size = 1435 out of 1461 (non-empty = 553)
Window size = 1436 out of 1461 (non-empty = 553)
Window size = 1437 out of 1461 (non-empty = 553)
Window size = 1438 out of 1461 (non-empty = 553)
Window size = 1439 out of 1461 (non-empty = 553)
Window size = 1440 out of 1461 (non-empty = 553)
Window size = 1441 out of 1461 (non-empty = 553)
Window size = 1442 out of 1461 (non-empty = 553)
Window size = 1443 out of 1461 (non-empty = 553)
Window size = 1444 out of 1461 (non-empty = 553)
Window size = 1445 out of 1461 (non-empty = 553)
Window size = 1446 out of 1461 (non-empty = 553)
Window size = 1447 out of 1461 (non-empty = 553)
Window size = 1448 out of 1461 (non-empty = 553)
Window size = 1449 out of 1461 (non-empty = 553)
Window size = 1450 out of 1461 (non-empty = 553)
Window size = 1451 out of 1461 (non-empty = 553)
Window size = 1452 out of 1461 (non-empty = 553)
Window size = 1453 out of 1461 (non-empty = 553)
Window size = 1454 out of 1461 (non-empty = 553)
Window size = 1455 out of 1461 (non-empty = 553)
Window size = 1456 out of 1461 (non-empty = 553)
Window size = 1457 out of 1461 (non-empty = 553)
Window size = 1458 out of 1461 (non-empty = 553)
Window size = 1459 out of 1461 (non-empty = 553)
Window size = 1460 out of 1461 (non-empty = 553)
Window size = 1461 out of 1461 (non-empty = 553)
Conv:...............................................................................
Saving stats...
Running arbitrated peel-off...
Finding peaks on chromosome 1
Removing 2490 segments from data
Segment 100 of 2490
Segment 200 of 2490
Segment 300 of 2490
Segment 400 of 2490
Segment 500 of 2490
Segment 600 of 2490
Segment 700 of 2490
Segment 800 of 2490
Segment 900 of 2490
Segment 1000 of 2490
Segment 1100 of 2490
Segment 1200 of 2490
Segment 1300 of 2490
Segment 1400 of 2490
Segment 1500 of 2490
Segment 1600 of 2490
Segment 1700 of 2490
Segment 1800 of 2490
Segment 1900 of 2490
Segment 2000 of 2490
Segment 2100 of 2490
Segment 2200 of 2490
Segment 2300 of 2490
Segment 2400 of 2490
Removing 1232 segments from data
Segment 100 of 1232
Segment 200 of 1232
Segment 300 of 1232
Segment 400 of 1232
Segment 500 of 1232
Segment 600 of 1232
Segment 700 of 1232
Segment 800 of 1232
Segment 900 of 1232
Segment 1000 of 1232
Segment 1100 of 1232
Segment 1200 of 1232
Resolving conflicts...
Removing 2143 segments from data
Segment 100 of 2143
Segment 200 of 2143
Segment 300 of 2143
Segment 400 of 2143
Segment 500 of 2143
Segment 600 of 2143
Segment 700 of 2143
Segment 800 of 2143
Segment 900 of 2143
Segment 1000 of 2143
Segment 1100 of 2143
Segment 1200 of 2143
Segment 1300 of 2143
Segment 1400 of 2143
Segment 1500 of 2143
Segment 1600 of 2143
Segment 1700 of 2143
Segment 1800 of 2143
Segment 1900 of 2143
Segment 2000 of 2143
Segment 2100 of 2143
Removing 654 segments from data
Segment 100 of 654
Segment 200 of 654
Segment 300 of 654
Segment 400 of 654
Segment 500 of 654
Segment 600 of 654
Resolving conflicts...
Removing 635 segments from data
Segment 100 of 635
Segment 200 of 635
Segment 300 of 635
Segment 400 of 635
Segment 500 of 635
Segment 600 of 635
Resolving conflicts...
Removing 349 segments from data
Segment 100 of 349
Segment 200 of 349
Segment 300 of 349
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 5 on chromosome
Amplification peak at chr1:150617631-150622696(67862:67868)
q-value = 1.3643e-71 & residual q-value = 7.9905e-44
Computing score for peak 2 of 5 on chromosome
Amplification peak at chr1:204466860-204467676(101022:101024)
q-value = 1.5026e-53 & residual q-value = 1.2137e-25
Computing score for peak 3 of 5 on chromosome
Amplification peak at chr1:40400131-40400131(19435:19435)
q-value = 1.9498e-17 & residual q-value = 4.8817e-13
Computing score for peak 4 of 5 on chromosome
Amplification peak at chr1:85989240-85997286(47148:47153)
q-value = 2.5713e-13 & residual q-value = 1.0362e-06
Computing score for peak 5 of 5 on chromosome
Amplification peak at chr1:244125754-244178827(127243:127280)
q-value = 1.1743e-32 & residual q-value = 1.2841e-06
Finding peaks on chromosome 2
Removing 1519 segments from data
Segment 100 of 1519
Segment 200 of 1519
Segment 300 of 1519
Segment 400 of 1519
Segment 500 of 1519
Segment 600 of 1519
Segment 700 of 1519
Segment 800 of 1519
Segment 900 of 1519
Segment 1000 of 1519
Segment 1100 of 1519
Segment 1200 of 1519
Segment 1300 of 1519
Segment 1400 of 1519
Segment 1500 of 1519
Removing 961 segments from data
Segment 100 of 961
Segment 200 of 961
Segment 300 of 961
Segment 400 of 961
Segment 500 of 961
Segment 600 of 961
Segment 700 of 961
Segment 800 of 961
Segment 900 of 961
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr2:178114632-178114912(223656:223657)
q-value = 0.023566 & residual q-value = 0.023566
Finding peaks on chromosome 3
Removing 4173 segments from data
Segment 100 of 4173
Segment 200 of 4173
Segment 300 of 4173
Segment 400 of 4173
Segment 500 of 4173
Segment 600 of 4173
Segment 700 of 4173
Segment 800 of 4173
Segment 900 of 4173
Segment 1000 of 4173
Segment 1100 of 4173
Segment 1200 of 4173
Segment 1300 of 4173
Segment 1400 of 4173
Segment 1500 of 4173
Segment 1600 of 4173
Segment 1700 of 4173
Segment 1800 of 4173
Segment 1900 of 4173
Segment 2000 of 4173
Segment 2100 of 4173
Segment 2200 of 4173
Segment 2300 of 4173
Segment 2400 of 4173
Segment 2500 of 4173
Segment 2600 of 4173
Segment 2700 of 4173
Segment 2800 of 4173
Segment 2900 of 4173
Segment 3000 of 4173
Segment 3100 of 4173
Segment 3200 of 4173
Segment 3300 of 4173
Segment 3400 of 4173
Segment 3500 of 4173
Segment 3600 of 4173
Segment 3700 of 4173
Segment 3800 of 4173
Segment 3900 of 4173
Segment 4000 of 4173
Segment 4100 of 4173
Removing 807 segments from data
Segment 100 of 807
Segment 200 of 807
Segment 300 of 807
Segment 400 of 807
Segment 500 of 807
Segment 600 of 807
Segment 700 of 807
Segment 800 of 807
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr3:169420117-169425497(351818:351822)
q-value = 8.3763e-203 & residual q-value = 8.3763e-203
Finding peaks on chromosome 4
Removing 1146 segments from data
Segment 100 of 1146
Segment 200 of 1146
Segment 300 of 1146
Segment 400 of 1146
Segment 500 of 1146
Segment 600 of 1146
Segment 700 of 1146
Segment 800 of 1146
Segment 900 of 1146
Segment 1000 of 1146
Segment 1100 of 1146
Removing 665 segments from data
Segment 100 of 665
Segment 200 of 665
Segment 300 of 665
Segment 400 of 665
Segment 500 of 665
Segment 600 of 665
Removing 681 segments from data
Segment 100 of 681
Segment 200 of 681
Segment 300 of 681
Segment 400 of 681
Segment 500 of 681
Segment 600 of 681
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr4:55159475-55159475(395844:395844)
q-value = 2.7251e-38 & residual q-value = 2.7251e-38
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr4:1792018-1792018(366424:366424)
q-value = 0.00055435 & residual q-value = 0.00055435
Finding peaks on chromosome 5
Removing 1114 segments from data
Segment 100 of 1114
Segment 200 of 1114
Segment 300 of 1114
Segment 400 of 1114
Segment 500 of 1114
Segment 600 of 1114
Segment 700 of 1114
Segment 800 of 1114
Segment 900 of 1114
Segment 1000 of 1114
Segment 1100 of 1114
Removing 1397 segments from data
Segment 100 of 1397
Segment 200 of 1397
Segment 300 of 1397
Segment 400 of 1397
Segment 500 of 1397
Segment 600 of 1397
Segment 700 of 1397
Segment 800 of 1397
Segment 900 of 1397
Segment 1000 of 1397
Segment 1100 of 1397
Segment 1200 of 1397
Segment 1300 of 1397
Removing 311 segments from data
Segment 100 of 311
Segment 200 of 311
Segment 300 of 311
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr5:1288661-1288661(468806:468806)
q-value = 2.1906e-21 & residual q-value = 2.1906e-21
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr5:176645435-176650614(567407:567411)
q-value = 1.3057e-06 & residual q-value = 1.3057e-06
Finding peaks on chromosome 6
Removing 1386 segments from data
Segment 100 of 1386
Segment 200 of 1386
Segment 300 of 1386
Segment 400 of 1386
Segment 500 of 1386
Segment 600 of 1386
Segment 700 of 1386
Segment 800 of 1386
Segment 900 of 1386
Segment 1000 of 1386
Segment 1100 of 1386
Segment 1200 of 1386
Segment 1300 of 1386
Removing 1509 segments from data
Segment 100 of 1509
Segment 200 of 1509
Segment 300 of 1509
Segment 400 of 1509
Segment 500 of 1509
Segment 600 of 1509
Segment 700 of 1509
Segment 800 of 1509
Segment 900 of 1509
Segment 1000 of 1509
Segment 1100 of 1509
Segment 1200 of 1509
Segment 1300 of 1509
Segment 1400 of 1509
Segment 1500 of 1509
Removing 741 segments from data
Segment 100 of 741
Segment 200 of 741
Segment 300 of 741
Segment 400 of 741
Segment 500 of 741
Segment 600 of 741
Segment 700 of 741
Resolving conflicts...
Removing 439 segments from data
Segment 100 of 439
Segment 200 of 439
Segment 300 of 439
Segment 400 of 439
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr6:18497200-18501345(581318:581329)
q-value = 2.6622e-12 & residual q-value = 6.5535e-09
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr6:107218335-107241341(627753:627768)
q-value = 0.0044023 & residual q-value = 0.0045052
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr6:43695675-43695675(594808:594808)
q-value = 0.001011 & residual q-value = 0.11284
Finding peaks on chromosome 7
Removing 1286 segments from data
Segment 100 of 1286
Segment 200 of 1286
Segment 300 of 1286
Segment 400 of 1286
Segment 500 of 1286
Segment 600 of 1286
Segment 700 of 1286
Segment 800 of 1286
Segment 900 of 1286
Segment 1000 of 1286
Segment 1100 of 1286
Segment 1200 of 1286
Removing 1546 segments from data
Segment 100 of 1546
Segment 200 of 1546
Segment 300 of 1546
Segment 400 of 1546
Segment 500 of 1546
Segment 600 of 1546
Segment 700 of 1546
Segment 800 of 1546
Segment 900 of 1546
Segment 1000 of 1546
Segment 1100 of 1546
Segment 1200 of 1546
Segment 1300 of 1546
Segment 1400 of 1546
Segment 1500 of 1546
Removing 801 segments from data
Segment 100 of 801
Segment 200 of 801
Segment 300 of 801
Segment 400 of 801
Segment 500 of 801
Segment 600 of 801
Segment 700 of 801
Segment 800 of 801
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr7:55090379-55090870(697702:697709)
q-value = 1.267e-239 & residual q-value = 1.267e-239
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr7:157062512-157063276(745975:745976)
q-value = 6.311e-08 & residual q-value = 6.311e-08
Finding peaks on chromosome 8
Removing 5062 segments from data
Segment 100 of 5062
Segment 200 of 5062
Segment 300 of 5062
Segment 400 of 5062
Segment 500 of 5062
Segment 600 of 5062
Segment 700 of 5062
Segment 800 of 5062
Segment 900 of 5062
Segment 1000 of 5062
Segment 1100 of 5062
Segment 1200 of 5062
Segment 1300 of 5062
Segment 1400 of 5062
Segment 1500 of 5062
Segment 1600 of 5062
Segment 1700 of 5062
Segment 1800 of 5062
Segment 1900 of 5062
Segment 2000 of 5062
Segment 2100 of 5062
Segment 2200 of 5062
Segment 2300 of 5062
Segment 2400 of 5062
Segment 2500 of 5062
Segment 2600 of 5062
Segment 2700 of 5062
Segment 2800 of 5062
Segment 2900 of 5062
Segment 3000 of 5062
Segment 3100 of 5062
Segment 3200 of 5062
Segment 3300 of 5062
Segment 3400 of 5062
Segment 3500 of 5062
Segment 3600 of 5062
Segment 3700 of 5062
Segment 3800 of 5062
Segment 3900 of 5062
Segment 4000 of 5062
Segment 4100 of 5062
Segment 4200 of 5062
Segment 4300 of 5062
Segment 4400 of 5062
Segment 4500 of 5062
Segment 4600 of 5062
Segment 4700 of 5062
Segment 4800 of 5062
Segment 4900 of 5062
Segment 5000 of 5062
Removing 1304 segments from data
Segment 100 of 1304
Segment 200 of 1304
Segment 300 of 1304
Segment 400 of 1304
Segment 500 of 1304
Segment 600 of 1304
Segment 700 of 1304
Segment 800 of 1304
Segment 900 of 1304
Segment 1000 of 1304
Segment 1100 of 1304
Segment 1200 of 1304
Segment 1300 of 1304
Removing 403 segments from data
Segment 100 of 403
Segment 200 of 403
Segment 300 of 403
Segment 400 of 403
Resolving conflicts...
Removing 416 segments from data
Segment 100 of 416
Segment 200 of 416
Segment 300 of 416
Segment 400 of 416
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr8:128754837-128765361(818035:818040)
q-value = 6.9857e-284 & residual q-value = 6.9857e-284
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr8:38207123-38207123(768555:768555)
q-value = 7.8258e-85 & residual q-value = 5.1466e-57
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr8:41876504-41876504(770664:770664)
q-value = 5.6828e-47 & residual q-value = 1.5115e-13
Finding peaks on chromosome 9
Computing background score...
Finding peaks on chromosome 10
Removing 1618 segments from data
Segment 100 of 1618
Segment 200 of 1618
Segment 300 of 1618
Segment 400 of 1618
Segment 500 of 1618
Segment 600 of 1618
Segment 700 of 1618
Segment 800 of 1618
Segment 900 of 1618
Segment 1000 of 1618
Segment 1100 of 1618
Segment 1200 of 1618
Segment 1300 of 1618
Segment 1400 of 1618
Segment 1500 of 1618
Segment 1600 of 1618
Removing 793 segments from data
Segment 100 of 793
Segment 200 of 793
Segment 300 of 793
Segment 400 of 793
Segment 500 of 793
Segment 600 of 793
Segment 700 of 793
Removing 538 segments from data
Segment 100 of 538
Segment 200 of 538
Segment 300 of 538
Segment 400 of 538
Segment 500 of 538
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr10:79658055-79675243(941561:941569)
q-value = 3.8357e-06 & residual q-value = 3.8357e-06
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr10:5018824-5026680(898719:898724)
q-value = 0.0061799 & residual q-value = 0.0061799
Finding peaks on chromosome 11
Removing 2977 segments from data
Segment 100 of 2977
Segment 200 of 2977
Segment 300 of 2977
Segment 400 of 2977
Segment 500 of 2977
Segment 600 of 2977
Segment 700 of 2977
Segment 800 of 2977
Segment 900 of 2977
Segment 1000 of 2977
Segment 1100 of 2977
Segment 1200 of 2977
Segment 1300 of 2977
Segment 1400 of 2977
Segment 1500 of 2977
Segment 1600 of 2977
Segment 1700 of 2977
Segment 1800 of 2977
Segment 1900 of 2977
Segment 2000 of 2977
Segment 2100 of 2977
Segment 2200 of 2977
Segment 2300 of 2977
Segment 2400 of 2977
Segment 2500 of 2977
Segment 2600 of 2977
Segment 2700 of 2977
Segment 2800 of 2977
Segment 2900 of 2977
Removing 696 segments from data
Segment 100 of 696
Segment 200 of 696
Segment 300 of 696
Segment 400 of 696
Segment 500 of 696
Segment 600 of 696
Resolving conflicts...
Removing 669 segments from data
Segment 100 of 669
Segment 200 of 669
Segment 300 of 669
Segment 400 of 669
Segment 500 of 669
Segment 600 of 669
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr11:69476266-69484581(1012758:1012762)
q-value = 2.5541e-162 & residual q-value = 3.2329e-121
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr11:77776911-77779042(1017062:1017064)
q-value = 2.6786e-72 & residual q-value = 3.1817e-15
Finding peaks on chromosome 12
Removing 1972 segments from data
Segment 100 of 1972
Segment 200 of 1972
Segment 300 of 1972
Segment 400 of 1972
Segment 500 of 1972
Segment 600 of 1972
Segment 700 of 1972
Segment 800 of 1972
Segment 900 of 1972
Segment 1000 of 1972
Segment 1100 of 1972
Segment 1200 of 1972
Segment 1300 of 1972
Segment 1400 of 1972
Segment 1500 of 1972
Segment 1600 of 1972
Segment 1700 of 1972
Segment 1800 of 1972
Segment 1900 of 1972
Removing 1213 segments from data
Segment 100 of 1213
Segment 200 of 1213
Segment 300 of 1213
Segment 400 of 1213
Segment 500 of 1213
Segment 600 of 1213
Segment 700 of 1213
Segment 800 of 1213
Segment 900 of 1213
Segment 1000 of 1213
Segment 1100 of 1213
Segment 1200 of 1213
Removing 846 segments from data
Segment 100 of 846
Segment 200 of 846
Segment 300 of 846
Segment 400 of 846
Segment 500 of 846
Segment 600 of 846
Segment 700 of 846
Segment 800 of 846
Resolving conflicts...
Removing 453 segments from data
Segment 100 of 453
Segment 200 of 453
Segment 300 of 453
Segment 400 of 453
Resolving conflicts...
Removing 409 segments from data
Segment 100 of 409
Segment 200 of 409
Segment 300 of 409
Segment 400 of 409
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 4 on chromosome
Amplification peak at chr12:58144509-58145711(1082983:1082990)
q-value = 1.578e-45 & residual q-value = 4.4984e-25
Computing score for peak 2 of 4 on chromosome
Amplification peak at chr12:898661-907987(1053459:1053460)
q-value = 3.1671e-20 & residual q-value = 1.3443e-12
Computing score for peak 3 of 4 on chromosome
Amplification peak at chr12:69260756-69263523(1089983:1089985)
q-value = 5.4773e-35 & residual q-value = 6.4679e-12
Computing score for peak 4 of 4 on chromosome
Amplification peak at chr12:25675358-25675880(1067955:1067960)
q-value = 1.1955e-07 & residual q-value = 0.1003
Finding peaks on chromosome 13
Removing 1221 segments from data
Segment 100 of 1221
Segment 200 of 1221
Segment 300 of 1221
Segment 400 of 1221
Segment 500 of 1221
Segment 600 of 1221
Segment 700 of 1221
Segment 800 of 1221
Segment 900 of 1221
Segment 1000 of 1221
Segment 1100 of 1221
Segment 1200 of 1221
Removing 544 segments from data
Segment 100 of 544
Segment 200 of 544
Segment 300 of 544
Segment 400 of 544
Segment 500 of 544
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr13:110407906-110419853(1181277:1181290)
q-value = 2.6202e-06 & residual q-value = 2.6202e-06
Finding peaks on chromosome 14
Removing 1022 segments from data
Segment 100 of 1022
Segment 200 of 1022
Segment 300 of 1022
Segment 400 of 1022
Segment 500 of 1022
Segment 600 of 1022
Segment 700 of 1022
Segment 800 of 1022
Segment 900 of 1022
Segment 1000 of 1022
Removing 743 segments from data
Segment 100 of 743
Segment 200 of 743
Segment 300 of 743
Segment 400 of 743
Segment 500 of 743
Segment 600 of 743
Segment 700 of 743
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr14:105279650-105279650(1232792:1232792)
q-value = 0.059663 & residual q-value = 0.059663
Finding peaks on chromosome 15
Removing 1253 segments from data
Segment 100 of 1253
Segment 200 of 1253
Segment 300 of 1253
Segment 400 of 1253
Segment 500 of 1253
Segment 600 of 1253
Segment 700 of 1253
Segment 800 of 1253
Segment 900 of 1253
Segment 1000 of 1253
Segment 1100 of 1253
Segment 1200 of 1253
Removing 300 segments from data
Segment 100 of 300
Segment 200 of 300
Segment 300 of 300
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr15:99506942-99513231(1276286:1276292)
q-value = 1.0294e-17 & residual q-value = 1.0294e-17
Finding peaks on chromosome 16
Computing background score...
Finding peaks on chromosome 17
Removing 2949 segments from data
Segment 100 of 2949
Segment 200 of 2949
Segment 300 of 2949
Segment 400 of 2949
Segment 500 of 2949
Segment 600 of 2949
Segment 700 of 2949
Segment 800 of 2949
Segment 900 of 2949
Segment 1000 of 2949
Segment 1100 of 2949
Segment 1200 of 2949
Segment 1300 of 2949
Segment 1400 of 2949
Segment 1500 of 2949
Segment 1600 of 2949
Segment 1700 of 2949
Segment 1800 of 2949
Segment 1900 of 2949
Segment 2000 of 2949
Segment 2100 of 2949
Segment 2200 of 2949
Segment 2300 of 2949
Segment 2400 of 2949
Segment 2500 of 2949
Segment 2600 of 2949
Segment 2700 of 2949
Segment 2800 of 2949
Segment 2900 of 2949
Removing 1600 segments from data
Segment 100 of 1600
Segment 200 of 1600
Segment 300 of 1600
Segment 400 of 1600
Segment 500 of 1600
Segment 600 of 1600
Segment 700 of 1600
Segment 800 of 1600
Segment 900 of 1600
Segment 1000 of 1600
Segment 1100 of 1600
Segment 1200 of 1600
Segment 1300 of 1600
Segment 1400 of 1600
Segment 1500 of 1600
Segment 1600 of 1600
Resolving conflicts...
Removing 227 segments from data
Segment 100 of 227
Segment 200 of 227
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr17:37870406-37870539(1333226:1333228)
q-value = 6.6321e-105 & residual q-value = 4.8765e-81
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr17:77792037-77792037(1353722:1353722)
q-value = 1.1462e-30 & residual q-value = 1.9952e-19
Finding peaks on chromosome 18
Removing 755 segments from data
Segment 100 of 755
Segment 200 of 755
Segment 300 of 755
Segment 400 of 755
Segment 500 of 755
Segment 600 of 755
Segment 700 of 755
Removing 250 segments from data
Segment 100 of 250
Segment 200 of 250
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr18:23947865-23947865(1366141:1366141)
q-value = 0.033607 & residual q-value = 0.033607
Finding peaks on chromosome 19
Removing 1763 segments from data
Segment 100 of 1763
Segment 200 of 1763
Segment 300 of 1763
Segment 400 of 1763
Segment 500 of 1763
Segment 600 of 1763
Segment 700 of 1763
Segment 800 of 1763
Segment 900 of 1763
Segment 1000 of 1763
Segment 1100 of 1763
Segment 1200 of 1763
Segment 1300 of 1763
Segment 1400 of 1763
Segment 1500 of 1763
Segment 1600 of 1763
Segment 1700 of 1763
Removing 1396 segments from data
Segment 100 of 1396
Segment 200 of 1396
Segment 300 of 1396
Segment 400 of 1396
Segment 500 of 1396
Segment 600 of 1396
Segment 700 of 1396
Segment 800 of 1396
Segment 900 of 1396
Segment 1000 of 1396
Segment 1100 of 1396
Segment 1200 of 1396
Segment 1300 of 1396
Resolving conflicts...
Removing 308 segments from data
Segment 100 of 308
Segment 200 of 308
Segment 300 of 308
Resolving conflicts...
Removing 526 segments from data
Segment 100 of 526
Segment 200 of 526
Segment 300 of 526
Segment 400 of 526
Segment 500 of 526
Resolving conflicts...
Computing background score...
Computing score for peak 1 of 3 on chromosome
Amplification peak at chr19:30307380-30308526(1408010:1408021)
q-value = 4.5556e-98 & residual q-value = 8.4495e-98
Computing score for peak 2 of 3 on chromosome
Amplification peak at chr19:15351573-15352372(1403033:1403034)
q-value = 4.0167e-26 & residual q-value = 2.5817e-20
Computing score for peak 3 of 3 on chromosome
Amplification peak at chr19:7309964-7325273(1399473:1399475)
q-value = 9.3352e-08 & residual q-value = 0.092087
Finding peaks on chromosome 20
Removing 1816 segments from data
Segment 100 of 1816
Segment 200 of 1816
Segment 300 of 1816
Segment 400 of 1816
Segment 500 of 1816
Segment 600 of 1816
Segment 700 of 1816
Segment 800 of 1816
Segment 900 of 1816
Segment 1000 of 1816
Segment 1100 of 1816
Segment 1200 of 1816
Segment 1300 of 1816
Segment 1400 of 1816
Segment 1500 of 1816
Segment 1600 of 1816
Segment 1700 of 1816
Segment 1800 of 1816
Removing 528 segments from data
Segment 100 of 528
Segment 200 of 528
Segment 300 of 528
Segment 400 of 528
Segment 500 of 528
Resolving conflicts...
Removing 494 segments from data
Segment 100 of 494
Segment 200 of 494
Segment 300 of 494
Segment 400 of 494
Computing background score...
Computing score for peak 1 of 2 on chromosome
Amplification peak at chr20:52274204-52274369(1451740:1451741)
q-value = 3.1137e-33 & residual q-value = 3.6502e-31
Computing score for peak 2 of 2 on chromosome
Amplification peak at chr20:30218942-30218942(1438307:1438307)
q-value = 3.5541e-10 & residual q-value = 5.4142e-06
Finding peaks on chromosome 21
Computing background score...
Finding peaks on chromosome 22
Computing background score...
Finding peaks on chromosome 23
Removing 1072 segments from data
Segment 100 of 1072
Segment 200 of 1072
Segment 300 of 1072
Segment 400 of 1072
Segment 500 of 1072
Segment 600 of 1072
Segment 700 of 1072
Segment 800 of 1072
Segment 900 of 1072
Segment 1000 of 1072
Removing 560 segments from data
Segment 100 of 560
Segment 200 of 560
Segment 300 of 560
Segment 400 of 560
Segment 500 of 560
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chrX:153261066-153261404(1559442:1559443)
q-value = 4.0152e-07 & residual q-value = 4.0152e-07
Finding peaks on chromosome 1
Removing 1988 segments from data
Segment 100 of 1988
Segment 200 of 1988
Segment 300 of 1988
Segment 400 of 1988
Segment 500 of 1988
Segment 600 of 1988
Segment 700 of 1988
Segment 800 of 1988
Segment 900 of 1988
Segment 1000 of 1988
Segment 1100 of 1988
Segment 1200 of 1988
Segment 1300 of 1988
Segment 1400 of 1988
Segment 1500 of 1988
Segment 1600 of 1988
Segment 1700 of 1988
Segment 1800 of 1988
Segment 1900 of 1988
Updating gene gistic scores for 2257 genes
Removing 701 segments from data
Segment 100 of 701
Segment 200 of 701
Segment 300 of 701
Segment 400 of 701
Segment 500 of 701
Segment 600 of 701
Segment 700 of 701
Resolving conflicts...
Updating gene gistic scores for 2257 genes
Updating gene gistic scores for 2254 genes
Removing 515 segments from data
Segment 100 of 515
Segment 200 of 515
Segment 300 of 515
Segment 400 of 515
Segment 500 of 515
Resolving conflicts...
Updating gene gistic scores for 2257 genes
Updating gene gistic scores for 2866 genes
Removing 616 segments from data
Segment 100 of 616
Segment 200 of 616
Segment 300 of 616
Segment 400 of 616
Segment 500 of 616
Segment 600 of 616
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 4076 genes
Deletion peak at genes: ERRFI1
q-value = 1.4298e-119 & residual q-value = 4.7966e-39
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 4076 genes
Deletion peak at genes: ARID1A
q-value = 2.7928e-111 & residual q-value = 1.3266e-43
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 4076 genes
Deletion peak at genes: WNT2B
q-value = 1.355e-06 & residual q-value = 0.16117
Finding peaks on chromosome 2
Removing 1879 segments from data
Segment 100 of 1879
Segment 200 of 1879
Segment 300 of 1879
Segment 400 of 1879
Segment 500 of 1879
Segment 600 of 1879
Segment 700 of 1879
Segment 800 of 1879
Segment 900 of 1879
Segment 1000 of 1879
Segment 1100 of 1879
Segment 1200 of 1879
Segment 1300 of 1879
Segment 1400 of 1879
Segment 1500 of 1879
Segment 1600 of 1879
Segment 1700 of 1879
Segment 1800 of 1879
Updating gene gistic scores for 1674 genes
Removing 816 segments from data
Segment 100 of 816
Segment 200 of 816
Segment 300 of 816
Segment 400 of 816
Segment 500 of 816
Segment 600 of 816
Segment 700 of 816
Segment 800 of 816
Resolving conflicts...
Updating gene gistic scores for 1559 genes
Updating gene gistic scores for 1558 genes
Removing 521 segments from data
Segment 100 of 521
Segment 200 of 521
Segment 300 of 521
Segment 400 of 521
Segment 500 of 521
Updating gene gistic scores for 924 genes
Removing 186 segments from data
Segment 100 of 186
Resolving conflicts...
Updating gene gistic scores for 924 genes
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 2480 genes
Deletion peak at genes: LRP1B
q-value = 3.667e-41 & residual q-value = 3.4285e-31
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 2480 genes
Deletion peak at genes: hsa-mir-3133
q-value = 1.1226e-36 & residual q-value = 1.7587e-22
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 2480 genes
Deletion peak at genes: ACP1
q-value = 0.13823 & residual q-value = 0.13823
Finding peaks on chromosome 3
Removing 1174 segments from data
Segment 100 of 1174
Segment 200 of 1174
Segment 300 of 1174
Segment 400 of 1174
Segment 500 of 1174
Segment 600 of 1174
Segment 700 of 1174
Segment 800 of 1174
Segment 900 of 1174
Segment 1000 of 1174
Segment 1100 of 1174
Updating gene gistic scores for 1247 genes
Removing 627 segments from data
Segment 100 of 627
Segment 200 of 627
Segment 300 of 627
Segment 400 of 627
Segment 500 of 627
Segment 600 of 627
Resolving conflicts...
Updating gene gistic scores for 1069 genes
Updating gene gistic scores for 1067 genes
Removing 582 segments from data
Segment 100 of 582
Segment 200 of 582
Segment 300 of 582
Segment 400 of 582
Segment 500 of 582
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 2201 genes
Deletion peak at genes: FHIT
q-value = 1.0086e-53 & residual q-value = 4.4569e-41
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 2201 genes
Deletion peak at genes: CNTN4
q-value = 4.3983e-17 & residual q-value = 9.5203e-09
Finding peaks on chromosome 4
Removing 1384 segments from data
Segment 100 of 1384
Segment 200 of 1384
Segment 300 of 1384
Segment 400 of 1384
Segment 500 of 1384
Segment 600 of 1384
Segment 700 of 1384
Segment 800 of 1384
Segment 900 of 1384
Segment 1000 of 1384
Segment 1100 of 1384
Segment 1200 of 1384
Segment 1300 of 1384
Updating gene gistic scores for 1064 genes
Removing 761 segments from data
Segment 100 of 761
Segment 200 of 761
Segment 300 of 761
Segment 400 of 761
Segment 500 of 761
Segment 600 of 761
Segment 700 of 761
Resolving conflicts...
Updating gene gistic scores for 1064 genes
Updating gene gistic scores for 1166 genes
Removing 353 segments from data
Segment 100 of 353
Segment 200 of 353
Segment 300 of 353
Updating gene gistic scores for 489 genes
Removing 304 segments from data
Segment 100 of 304
Segment 200 of 304
Segment 300 of 304
Resolving conflicts...
Updating gene gistic scores for 489 genes
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 1538 genes
Deletion peak at genes: LINC00290
q-value = 3.1101e-100 & residual q-value = 5.9425e-75
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 1538 genes
Deletion peak at genes: FAM190A
q-value = 3.7049e-44 & residual q-value = 1.1234e-28
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 1538 genes
Deletion peak at genes: SPON2
q-value = 0.030505 & residual q-value = 0.030505
Finding peaks on chromosome 5
Removing 1865 segments from data
Segment 100 of 1865
Segment 200 of 1865
Segment 300 of 1865
Segment 400 of 1865
Segment 500 of 1865
Segment 600 of 1865
Segment 700 of 1865
Segment 800 of 1865
Segment 900 of 1865
Segment 1000 of 1865
Segment 1100 of 1865
Segment 1200 of 1865
Segment 1300 of 1865
Segment 1400 of 1865
Segment 1500 of 1865
Segment 1600 of 1865
Segment 1700 of 1865
Segment 1800 of 1865
Updating gene gistic scores for 1592 genes
Removing 404 segments from data
Segment 100 of 404
Segment 200 of 404
Segment 300 of 404
Segment 400 of 404
Resolving conflicts...
Updating gene gistic scores for 1428 genes
Updating gene gistic scores for 1412 genes
Removing 173 segments from data
Segment 100 of 173
Resolving conflicts...
Updating gene gistic scores for 1428 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 1697 genes
Deletion peak at genes: PDE4D
q-value = 1.1652e-129 & residual q-value = 1.2281e-109
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 1697 genes
Deletion peak at genes: EFNA5
q-value = 9.5975e-35 & residual q-value = 0.00012211
Finding peaks on chromosome 6
Removing 1937 segments from data
Segment 100 of 1937
Segment 200 of 1937
Segment 300 of 1937
Segment 400 of 1937
Segment 500 of 1937
Segment 600 of 1937
Segment 700 of 1937
Segment 800 of 1937
Segment 900 of 1937
Segment 1000 of 1937
Segment 1100 of 1937
Segment 1200 of 1937
Segment 1300 of 1937
Segment 1400 of 1937
Segment 1500 of 1937
Segment 1600 of 1937
Segment 1700 of 1937
Segment 1800 of 1937
Segment 1900 of 1937
Updating gene gistic scores for 842 genes
Removing 605 segments from data
Segment 100 of 605
Segment 200 of 605
Segment 300 of 605
Segment 400 of 605
Segment 500 of 605
Segment 600 of 605
Updating gene gistic scores for 1173 genes
Removing 543 segments from data
Segment 100 of 543
Segment 200 of 543
Segment 300 of 543
Segment 400 of 543
Segment 500 of 543
Resolving conflicts...
Updating gene gistic scores for 842 genes
Updating gene gistic scores for 853 genes
Removing 226 segments from data
Segment 100 of 226
Segment 200 of 226
Resolving conflicts...
Updating gene gistic scores for 860 genes
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 2012 genes
Deletion peak at genes: PARK2
q-value = 1.1405e-116 & residual q-value = 1.363e-96
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 2012 genes
Deletion peak at genes: GMDS
q-value = 1.0088e-08 & residual q-value = 9.8944e-09
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 2012 genes
Deletion peak at genes: NKAIN2
q-value = 3.2758e-18 & residual q-value = 0.017533
Finding peaks on chromosome 7
Removing 620 segments from data
Segment 100 of 620
Segment 200 of 620
Segment 300 of 620
Segment 400 of 620
Segment 500 of 620
Segment 600 of 620
Updating gene gistic scores for 641 genes
Removing 638 segments from data
Segment 100 of 638
Segment 200 of 638
Segment 300 of 638
Segment 400 of 638
Segment 500 of 638
Segment 600 of 638
Updating gene gistic scores for 1277 genes
Removing 339 segments from data
Segment 100 of 339
Segment 200 of 339
Segment 300 of 339
Resolving conflicts...
Updating gene gistic scores for 1277 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 1918 genes
Deletion peak at genes: SUN1
q-value = 3.5788e-17 & residual q-value = 3.5788e-17
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 1918 genes
Deletion peak at genes: MLL3
q-value = 0.0071303 & residual q-value = 0.0071935
Finding peaks on chromosome 8
Removing 1415 segments from data
Segment 100 of 1415
Segment 200 of 1415
Segment 300 of 1415
Segment 400 of 1415
Segment 500 of 1415
Segment 600 of 1415
Segment 700 of 1415
Segment 800 of 1415
Segment 900 of 1415
Segment 1000 of 1415
Segment 1100 of 1415
Segment 1200 of 1415
Segment 1300 of 1415
Segment 1400 of 1415
Updating gene gistic scores for 580 genes
Removing 248 segments from data
Segment 100 of 248
Segment 200 of 248
Resolving conflicts...
Updating gene gistic scores for 580 genes
Updating gene gistic scores for 579 genes
Removing 433 segments from data
Segment 100 of 433
Segment 200 of 433
Segment 300 of 433
Segment 400 of 433
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 1439 genes
Deletion peak at genes: CSMD1
q-value = 8.7822e-148 & residual q-value = 2.848e-119
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 1439 genes
Deletion peak at genes: PPP2R2A
q-value = 2.5307e-69 & residual q-value = 5.7181e-09
Finding peaks on chromosome 9
Removing 1827 segments from data
Segment 100 of 1827
Segment 200 of 1827
Segment 300 of 1827
Segment 400 of 1827
Segment 500 of 1827
Segment 600 of 1827
Segment 700 of 1827
Segment 800 of 1827
Segment 900 of 1827
Segment 1000 of 1827
Segment 1100 of 1827
Segment 1200 of 1827
Segment 1300 of 1827
Segment 1400 of 1827
Segment 1500 of 1827
Segment 1600 of 1827
Segment 1700 of 1827
Segment 1800 of 1827
Updating gene gistic scores for 467 genes
Removing 566 segments from data
Segment 100 of 566
Segment 200 of 566
Segment 300 of 566
Segment 400 of 566
Segment 500 of 566
Updating gene gistic scores for 1152 genes
Removing 285 segments from data
Segment 100 of 285
Segment 200 of 285
Resolving conflicts...
Updating gene gistic scores for 1535 genes
Updating gene gistic scores for 1363 genes
Removing 312 segments from data
Segment 100 of 312
Segment 200 of 312
Segment 300 of 312
Resolving conflicts...
Updating gene gistic scores for 451 genes
Updating gene gistic scores for 366 genes
Removing 219 segments from data
Segment 100 of 219
Segment 200 of 219
Resolving conflicts...
Updating gene gistic scores for 1152 genes
Computing background score...
Computing score for peak 1 of 4 on chromosome
Updating gene gistic scores for 1535 genes
Deletion peak at genes: C9orf53
q-value = 0 & residual q-value = 0
Computing score for peak 2 of 4 on chromosome
Updating gene gistic scores for 1535 genes
Deletion peak at genes: OLFM1
q-value = 5.3469e-05 & residual q-value = 0.0005484
Computing score for peak 3 of 4 on chromosome
Updating gene gistic scores for 1535 genes
Deletion peak at genes: PGM5
q-value = 3.783e-09 & residual q-value = 0.057852
Computing score for peak 4 of 4 on chromosome
Updating gene gistic scores for 1535 genes
Deletion peak at genes: PTPRD
q-value = 1.5974e-29 & residual q-value = 0.026655
Finding peaks on chromosome 10
Removing 1524 segments from data
Segment 100 of 1524
Segment 200 of 1524
Segment 300 of 1524
Segment 400 of 1524
Segment 500 of 1524
Segment 600 of 1524
Segment 700 of 1524
Segment 800 of 1524
Segment 900 of 1524
Segment 1000 of 1524
Segment 1100 of 1524
Segment 1200 of 1524
Segment 1300 of 1524
Segment 1400 of 1524
Segment 1500 of 1524
Updating gene gistic scores for 1282 genes
Removing 433 segments from data
Segment 100 of 433
Segment 200 of 433
Segment 300 of 433
Segment 400 of 433
Resolving conflicts...
Updating gene gistic scores for 1268 genes
Updating gene gistic scores for 1246 genes
Removing 343 segments from data
Segment 100 of 343
Segment 200 of 343
Segment 300 of 343
Updating gene gistic scores for 410 genes
Removing 365 segments from data
Segment 100 of 365
Segment 200 of 365
Segment 300 of 365
Resolving conflicts...
Updating gene gistic scores for 1282 genes
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 1677 genes
Deletion peak at genes: PTEN
q-value = 7.7262e-124 & residual q-value = 1.6413e-103
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 1677 genes
Deletion peak at genes: PAOX
q-value = 4.1972e-33 & residual q-value = 6.4028e-11
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 1677 genes
Deletion peak at genes: TUBB8
q-value = 0.0027066 & residual q-value = 0.0027002
Finding peaks on chromosome 11
Removing 988 segments from data
Segment 100 of 988
Segment 200 of 988
Segment 300 of 988
Segment 400 of 988
Segment 500 of 988
Segment 600 of 988
Segment 700 of 988
Segment 800 of 988
Segment 900 of 988
Updating gene gistic scores for 892 genes
Removing 990 segments from data
Segment 100 of 990
Segment 200 of 990
Segment 300 of 990
Segment 400 of 990
Segment 500 of 990
Segment 600 of 990
Segment 700 of 990
Segment 800 of 990
Segment 900 of 990
Updating gene gistic scores for 1519 genes
Removing 264 segments from data
Segment 100 of 264
Segment 200 of 264
Resolving conflicts...
Updating gene gistic scores for 1519 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 2377 genes
Deletion peak at genes: ANO9
q-value = 2.5139e-62 & residual q-value = 2.5139e-62
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 2377 genes
Deletion peak at genes: B3GAT1
q-value = 7.6026e-27 & residual q-value = 7.6997e-27
Finding peaks on chromosome 12
Removing 1063 segments from data
Segment 100 of 1063
Segment 200 of 1063
Segment 300 of 1063
Segment 400 of 1063
Segment 500 of 1063
Segment 600 of 1063
Segment 700 of 1063
Segment 800 of 1063
Segment 900 of 1063
Segment 1000 of 1063
Updating gene gistic scores for 1449 genes
Removing 479 segments from data
Segment 100 of 479
Segment 200 of 479
Segment 300 of 479
Segment 400 of 479
Updating gene gistic scores for 577 genes
Removing 441 segments from data
Segment 100 of 441
Segment 200 of 441
Segment 300 of 441
Segment 400 of 441
Resolving conflicts...
Updating gene gistic scores for 1449 genes
Updating gene gistic scores for 1409 genes
Removing 251 segments from data
Segment 100 of 251
Segment 200 of 251
Resolving conflicts...
Updating gene gistic scores for 1449 genes
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 2022 genes
Deletion peak at genes: FBRSL1
q-value = 4.1316e-14 & residual q-value = 8.3159e-05
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 2022 genes
Deletion peak at genes: APOLD1
q-value = 0.017127 & residual q-value = 0.017127
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 2022 genes
Deletion peak at genes: ANKS1B
q-value = 5.7011e-12 & residual q-value = 0.011759
Finding peaks on chromosome 13
Removing 1165 segments from data
Segment 100 of 1165
Segment 200 of 1165
Segment 300 of 1165
Segment 400 of 1165
Segment 500 of 1165
Segment 600 of 1165
Segment 700 of 1165
Segment 800 of 1165
Segment 900 of 1165
Segment 1000 of 1165
Segment 1100 of 1165
Updating gene gistic scores for 654 genes
Removing 305 segments from data
Segment 100 of 305
Segment 200 of 305
Segment 300 of 305
Resolving conflicts...
Updating gene gistic scores for 654 genes
Updating gene gistic scores for 638 genes
Removing 177 segments from data
Segment 100 of 177
Resolving conflicts...
Updating gene gistic scores for 654 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 654 genes
Deletion peak at genes: RB1
q-value = 1.2704e-104 & residual q-value = 8.9081e-88
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 654 genes
Deletion peak at genes: ANKRD20A9P
q-value = 3.2213e-16 & residual q-value = 0.11644
Finding peaks on chromosome 14
Removing 969 segments from data
Segment 100 of 969
Segment 200 of 969
Segment 300 of 969
Segment 400 of 969
Segment 500 of 969
Segment 600 of 969
Segment 700 of 969
Segment 800 of 969
Segment 900 of 969
Updating gene gistic scores for 1341 genes
Removing 397 segments from data
Segment 100 of 397
Segment 200 of 397
Segment 300 of 397
Resolving conflicts...
Updating gene gistic scores for 1341 genes
Computing background score...
Computing score for peak 1 of 1 on chromosome
Updating gene gistic scores for 1341 genes
Deletion peak at genes: RAD51B
q-value = 6.0425e-17 & residual q-value = 5.983e-17
Finding peaks on chromosome 15
Removing 947 segments from data
Segment 100 of 947
Segment 200 of 947
Segment 300 of 947
Segment 400 of 947
Segment 500 of 947
Segment 600 of 947
Segment 700 of 947
Segment 800 of 947
Segment 900 of 947
Updating gene gistic scores for 1355 genes
Removing 224 segments from data
Segment 100 of 224
Segment 200 of 224
Resolving conflicts...
Updating gene gistic scores for 1355 genes
Updating gene gistic scores for 1288 genes
Removing 170 segments from data
Segment 100 of 170
Resolving conflicts...
Updating gene gistic scores for 1355 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 1355 genes
Deletion peak at genes: MIR626
q-value = 4.5692e-57 & residual q-value = 1.373e-29
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 1355 genes
Deletion peak at genes: UBE3A
q-value = 2.139e-32 & residual q-value = 0.004524
Finding peaks on chromosome 16
Removing 900 segments from data
Segment 100 of 900
Segment 200 of 900
Segment 300 of 900
Segment 400 of 900
Segment 500 of 900
Segment 600 of 900
Segment 700 of 900
Segment 800 of 900
Segment 900 of 900
Updating gene gistic scores for 732 genes
Removing 698 segments from data
Segment 100 of 698
Segment 200 of 698
Segment 300 of 698
Segment 400 of 698
Segment 500 of 698
Segment 600 of 698
Updating gene gistic scores for 873 genes
Removing 186 segments from data
Segment 100 of 186
Resolving conflicts...
Updating gene gistic scores for 732 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 1574 genes
Deletion peak at genes: WWOX
q-value = 1.2615e-61 & residual q-value = 1.2615e-61
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 1574 genes
Deletion peak at genes: RBFOX1
q-value = 1.112e-47 & residual q-value = 1.112e-47
Finding peaks on chromosome 17
Removing 737 segments from data
Segment 100 of 737
Segment 200 of 737
Segment 300 of 737
Segment 400 of 737
Segment 500 of 737
Segment 600 of 737
Segment 700 of 737
Updating gene gistic scores for 1812 genes
Removing 380 segments from data
Segment 100 of 380
Segment 200 of 380
Segment 300 of 380
Resolving conflicts...
Updating gene gistic scores for 676 genes
Updating gene gistic scores for 798 genes
Removing 435 segments from data
Segment 100 of 435
Segment 200 of 435
Segment 300 of 435
Segment 400 of 435
Resolving conflicts...
Updating gene gistic scores for 1581 genes
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 2275 genes
Deletion peak at genes: NF1
q-value = 5.7784e-29 & residual q-value = 1.1783e-28
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 2275 genes
Deletion peak at genes: MAP2K4
q-value = 3.2e-16 & residual q-value = 7.2706e-16
Finding peaks on chromosome 18
Removing 787 segments from data
Segment 100 of 787
Segment 200 of 787
Segment 300 of 787
Segment 400 of 787
Segment 500 of 787
Segment 600 of 787
Segment 700 of 787
Updating gene gistic scores for 446 genes
Removing 280 segments from data
Segment 100 of 280
Segment 200 of 280
Resolving conflicts...
Updating gene gistic scores for 445 genes
Updating gene gistic scores for 425 genes
Removing 236 segments from data
Segment 100 of 236
Segment 200 of 236
Computing background score...
Computing score for peak 1 of 2 on chromosome
Updating gene gistic scores for 589 genes
Deletion peak at genes: ADNP2
q-value = 1.5347e-46 & residual q-value = 1.0205e-23
Computing score for peak 2 of 2 on chromosome
Updating gene gistic scores for 589 genes
Deletion peak at genes: SMAD4
q-value = 1.544e-23 & residual q-value = 4.1933e-05
Finding peaks on chromosome 19
Removing 1374 segments from data
Segment 100 of 1374
Segment 200 of 1374
Segment 300 of 1374
Segment 400 of 1374
Segment 500 of 1374
Segment 600 of 1374
Segment 700 of 1374
Segment 800 of 1374
Segment 900 of 1374
Segment 1000 of 1374
Segment 1100 of 1374
Segment 1200 of 1374
Segment 1300 of 1374
Updating gene gistic scores for 995 genes
Removing 830 segments from data
Segment 100 of 830
Segment 200 of 830
Segment 300 of 830
Segment 400 of 830
Segment 500 of 830
Segment 600 of 830
Segment 700 of 830
Segment 800 of 830
Updating gene gistic scores for 1712 genes
Removing 221 segments from data
Segment 100 of 221
Segment 200 of 221
Resolving conflicts...
Updating gene gistic scores for 1712 genes
Updating gene gistic scores for 1687 genes
Removing 164 segments from data
Segment 100 of 164
Resolving conflicts...
Updating gene gistic scores for 2704 genes
Computing background score...
Computing score for peak 1 of 3 on chromosome
Updating gene gistic scores for 2704 genes
Deletion peak at genes: TCF3
q-value = 2.3316e-185 & residual q-value = 2.3316e-185
Computing score for peak 2 of 3 on chromosome
Updating gene gistic scores for 2704 genes
Deletion peak at genes: ARHGAP35
q-value = 1.6591e-27 & residual q-value = 6.4171e-09
Computing score for peak 3 of 3 on chromosome
Updating gene gistic scores for 2704 genes
Deletion peak at genes: A1BG-AS1
q-value = 1.0621e-24 & residual q-value = 0.00030938
Finding peaks on chromosome 20
Removing 547 segments from data
Segment 100 of 547
Segment 200 of 547
Segment 300 of 547
Segment 400 of 547
Segment 500 of 547
Updating gene gistic scores for 447 genes
Removing 165 segments from data
Segment 100 of 165
Resolving conflicts...
Updating gene gistic scores for 357 genes
Computing background score...
Computing score for peak 1 of 1 on chromosome
Updating gene gistic scores for 1108 genes
Deletion peak at genes: MACROD2
q-value = 8.7713e-16 & residual q-value = 8.522e-16
Finding peaks on chromosome 21
Removing 724 segments from data
Segment 100 of 724
Segment 200 of 724
Segment 300 of 724
Segment 400 of 724
Segment 500 of 724
Segment 600 of 724
Segment 700 of 724
Updating gene gistic scores for 522 genes
Removing 311 segments from data
Segment 100 of 311
Segment 200 of 311
Segment 300 of 311
Resolving conflicts...
Updating gene gistic scores for 522 genes
Computing background score...
Computing score for peak 1 of 1 on chromosome
Updating gene gistic scores for 522 genes
Deletion peak at genes: ANKRD20A11P
q-value = 3.0037e-09 & residual q-value = 3.0515e-09
Finding peaks on chromosome 22
Removing 590 segments from data
Segment 100 of 590
Segment 200 of 590
Segment 300 of 590
Segment 400 of 590
Segment 500 of 590
Updating gene gistic scores for 921 genes
Removing 204 segments from data
Segment 100 of 204
Segment 200 of 204
Resolving conflicts...
Updating gene gistic scores for 921 genes
Computing background score...
Computing score for peak 1 of 1 on chromosome
Updating gene gistic scores for 921 genes
Deletion peak at genes: LOC339685
q-value = 6.8524e-68 & residual q-value = 6.9355e-68
Finding peaks on chromosome 23
Removing 580 segments from data
Segment 100 of 580
Segment 200 of 580
Segment 300 of 580
Segment 400 of 580
Segment 500 of 580
Updating gene gistic scores for 834 genes
Removing 303 segments from data
Segment 100 of 303
Segment 200 of 303
Segment 300 of 303
Computing background score...
Computing score for peak 1 of 1 on chromosome
Updating gene gistic scores for 2146 genes
Deletion peak at genes: DMD
q-value = 5.7601e-13 & residual q-value = 5.8583e-13
Saving peak regions...
Computing permuted score distributions...
Performing permutation 1 of 25
Performing permutation 2 of 25
Performing permutation 3 of 25
Performing permutation 4 of 25
Performing permutation 5 of 25
Performing permutation 6 of 25
Performing permutation 7 of 25
Performing permutation 8 of 25
Performing permutation 9 of 25
Performing permutation 10 of 25
Performing permutation 11 of 25
Performing permutation 12 of 25
Performing permutation 13 of 25
Performing permutation 14 of 25
Performing permutation 15 of 25
Performing permutation 16 of 25
Performing permutation 17 of 25
Performing permutation 18 of 25
Performing permutation 19 of 25
Performing permutation 20 of 25
Performing permutation 21 of 25
Performing permutation 22 of 25
Performing permutation 23 of 25
Performing permutation 24 of 25
Performing permutation 25 of 25
Performing permutation 1 of 25
Performing permutation 2 of 25
Performing permutation 3 of 25
Performing permutation 4 of 25
Performing permutation 5 of 25
Performing permutation 6 of 25
Performing permutation 7 of 25
Performing permutation 8 of 25
Performing permutation 9 of 25
Performing permutation 10 of 25
Performing permutation 11 of 25
Performing permutation 12 of 25
Performing permutation 13 of 25
Performing permutation 14 of 25
Performing permutation 15 of 25
Performing permutation 16 of 25
Performing permutation 17 of 25
Performing permutation 18 of 25
Performing permutation 19 of 25
Performing permutation 20 of 25
Performing permutation 21 of 25
Performing permutation 22 of 25
Performing permutation 23 of 25
Performing permutation 24 of 25
Performing permutation 25 of 25
Saving permuted score files...
Computing wide peak regions...
Running Regbounder at confidence level: 99%
     1

Calculating on permutation 1 of 25
Calculating on permutation 2 of 25
Calculating on permutation 3 of 25
Calculating on permutation 4 of 25
Calculating on permutation 5 of 25
Calculating on permutation 6 of 25
Calculating on permutation 7 of 25
Calculating on permutation 8 of 25
Calculating on permutation 9 of 25
Calculating on permutation 10 of 25
Calculating on permutation 11 of 25
Calculating on permutation 12 of 25
Calculating on permutation 13 of 25
Calculating on permutation 14 of 25
Calculating on permutation 15 of 25
Calculating on permutation 16 of 25
Calculating on permutation 17 of 25
Calculating on permutation 18 of 25
Calculating on permutation 19 of 25
Calculating on permutation 20 of 25
Calculating on permutation 21 of 25
Calculating on permutation 22 of 25
Calculating on permutation 23 of 25
Calculating on permutation 24 of 25
Calculating on permutation 25 of 25
     2

Calculating on permutation 1 of 25
Calculating on permutation 2 of 25
Calculating on permutation 3 of 25
Calculating on permutation 4 of 25
Calculating on permutation 5 of 25
Calculating on permutation 6 of 25
Calculating on permutation 7 of 25
Calculating on permutation 8 of 25
Calculating on permutation 9 of 25
Calculating on permutation 10 of 25
Calculating on permutation 11 of 25
Calculating on permutation 12 of 25
Calculating on permutation 13 of 25
Calculating on permutation 14 of 25
Calculating on permutation 15 of 25
Calculating on permutation 16 of 25
Calculating on permutation 17 of 25
Calculating on permutation 18 of 25
Calculating on permutation 19 of 25
Calculating on permutation 20 of 25
Calculating on permutation 21 of 25
Calculating on permutation 22 of 25
Calculating on permutation 23 of 25
Calculating on permutation 24 of 25
Calculating on permutation 25 of 25
Amplification wide peak at chr1:150495163-150738699(67829:67940)
Amplification wide peak at chr1:204367668-204547599(100951:101110)
Amplification wide peak at chr1:39652190-40591364(19106:19549)
Amplification wide peak at chr1:85980350-85998036(47147:47154)
Amplification wide peak at chr1:242978133-245940334(126681:128276)
Amplification wide peak at chr2:176988702-179120345(222856:224253)
Amplification wide peak at chr3:169384733-169490229(351795:351845)
Amplification wide peak at chr4:55139160-55165967(395774:395855)
Amplification wide peak at chr4:1778801-1816690(366423:366434)
Amplification wide peak at chr5:1288019-1313667(468804:468814)
Amplification wide peak at chr5:176050511-177059130(567249:567581)
Amplification wide peak at chr6:18380022-18697786(581216:581483)
Amplification wide peak at chr6:107174569-107346373(627713:627834)
Amplification wide peak at chr6:43463698-44061607(594699:595015)
Amplification wide peak at chr7:55065906-55095197(697689:697715)
Amplification wide peak at chr7:154958404-158383607(744684:746563)
Amplification wide peak at chr8:128740968-128770552(818032:818046)
Amplification wide peak at chr8:38171486-38254058(768546:768564)
Amplification wide peak at chr8:41746303-42000983(770598:770719)
Amplification wide peak at chr10:79538795-79737415(941474:941600)
Amplification wide peak at chr10:2684075-6393540(897016:899633)
Amplification wide peak at chr11:69460023-69493271(1012745:1012769)
Amplification wide peak at chr11:77435831-78029707(1016900:1017203)
Amplification wide peak at chr12:58125438-58156381(1082979:1082994)
Amplification wide peak at chr12:889902-1077860(1053454:1053538)
Amplification wide peak at chr12:69183278-69278181(1089909:1089997)
Amplification wide peak at chr12:25209870-25924981(1067503:1068126)
Amplification wide peak at chr13:109713396-111761308(1180743:1182256)
Amplification wide peak at chr14:105182580-105318962(1232768:1232803)
Amplification wide peak at chr15:98907134-99774542(1275872:1276476)
Amplification wide peak at chr17:37848545-37876818(1333194:1333236)
Amplification wide peak at chr17:77765982-77821663(1353715:1353738)
Amplification wide peak at chr18:23802249-24158524(1366087:1366294)
Amplification wide peak at chr19:30306820-30315735(1408006:1408028)
Amplification wide peak at chr19:15325257-15413220(1403022:1403074)
Amplification wide peak at chr19:7304492-7397015(1399471:1399477)
Amplification wide peak at chr20:52156927-52384462(1451673:1451829)
Amplification wide peak at chr20:30172117-30325713(1438294:1438363)
Amplification wide peak at chrX:152917506-154883301(1559303:1559584)
Smoothing score...
Deletion wide peak at chr1:7829433-8403633(2854:3170)
Smoothing score...
Deletion wide peak at chr1:26902694-27188081(12620:12707)
Smoothing score...
Deletion wide peak at chr1:79132176-119910505(42905:67248)
Smoothing score...
Deletion wide peak at chr2:139658541-143627097(200964:203383)
Smoothing score...
Deletion wide peak at chr2:240987844-242476062(259241:260001)
Smoothing score...
Deletion wide peak at chr2:484222-16077765(128895:138704)
Smoothing score...
Deletion wide peak at chr3:59044659-61538732(292821:293711)
Smoothing score...
Deletion wide peak at chr3:2212571-4329655(260002:261095)
Smoothing score...
Deletion wide peak at chr4:178913816-183059542(464219:466341)
Smoothing score...
Deletion wide peak at chr4:90957655-93222143(415997:417149)
Smoothing score...
Deletion wide peak at chr4:1053934-1282746(366201:366325)
Smoothing score...
Deletion wide peak at chr5:58147456-59787458(499685:500706)
Smoothing score...
Deletion wide peak at chr5:96500400-118170135(520181:531736)
Smoothing score...
Deletion wide peak at chr6:161695943-163152563(660977:661623)
Smoothing score...
Deletion wide peak at chr6:1616198-2250883(569595:570014)
Smoothing score...
Deletion wide peak at chr6:123960409-125228610(637067:637848)
Smoothing score...
Deletion wide peak at chr7:708774-1261364(665372:665467)
Smoothing score...
Deletion wide peak at chr7:151820833-152135594(743253:743373)
Smoothing score...
Deletion wide peak at chr8:2105621-6256533(747298:749132)
Smoothing score...
Deletion wide peak at chr8:22786150-26363027(759133:761519)
Smoothing score...
Deletion wide peak at chr9:21801319-22446297(841296:841681)
Smoothing score...
Deletion wide peak at chr9:132807306-139381941(891795:895365)
Smoothing score...
Deletion wide peak at chr9:38626309-71149229(851015:851249)
Smoothing score...
Deletion wide peak at chr9:7800297-12689377(832162:834215)
Smoothing score...
Deletion wide peak at chr10:89617401-90033423(947785:948212)
Smoothing score...
Deletion wide peak at chr10:135190358-135206873(976365:976376)
Smoothing score...
Deletion wide peak at chr10:415240-691738(895750:895821)
Smoothing score...
Deletion wide peak at chr11:456120-733639(976382:976438)
Smoothing score...
Deletion wide peak at chr11:133402468-134140152(1053093:1053453)
Smoothing score...
Deletion wide peak at chr12:131697507-133155338(1126722:1127176)
Smoothing score...
Deletion wide peak at chr12:12719931-13027298(1059921:1060116)
Smoothing score...
Deletion wide peak at chr12:99125633-100428331(1108255:1108940)
Smoothing score...
Deletion wide peak at chr13:48838812-49062990(1145701:1145947)
Smoothing score...
Deletion wide peak at chr13:19450806-20529442(1127177:1127543)
Smoothing score...
Deletion wide peak at chr14:68278378-69246588(1209973:1210552)
Smoothing score...
Deletion wide peak at chr15:41800663-42117256(1241932:1242095)
Smoothing score...
Deletion wide peak at chr15:23687685-31194481(1233006:1235707)
Smoothing score...
Deletion wide peak at chr16:78129906-79627535(1310506:1311861)
Smoothing score...
Deletion wide peak at chr16:5152862-7764030(1279048:1280526)
Smoothing score...
Deletion wide peak at chr17:29327128-29711411(1329347:1329507)
Smoothing score...
Deletion wide peak at chr17:11902039-12450690(1323944:1324304)
Smoothing score...
Deletion wide peak at chr18:74683072-77107934(1396010:1397464)
Smoothing score...
Deletion wide peak at chr18:48477205-48698166(1381414:1381622)
Smoothing score...
Deletion wide peak at chr19:1428996-1873720(1397674:1397742)
Smoothing score...
Deletion wide peak at chr19:47140679-47904944(1416585:1416849)
Smoothing score...
Deletion wide peak at chr19:58461543-58878226(1421080:1421328)
Smoothing score...
Deletion wide peak at chr20:14304514-16036115(1430110:1431079)
Smoothing score...
Deletion wide peak at chr21:15372509-15479678(1458540:1458582)
Smoothing score...
Deletion wide peak at chr22:47572997-48016589(1494497:1494845)
Smoothing score...
Deletion wide peak at chrX:30870232-34034134(1508462:1509718)
Saving final_regions...
Writing output files...
Writing all_lesions file to: /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/160243/all_lesions.conf_99.txt
Adding gene annotations
Writing output gene table files
Writing q value, p value and amp/del score file
About to save Raw_copy_number figure file
{Warning: Large-scale algorithm does not currently solve this problem
formulation,
using medium-scale algorithm instead.} 
> In quadprog at 291
  In find_text_pos at 42
  In draw_spaced_text at 42
  In plot_snp_score at 469
  In gistic_plots at 214
  In run_focal_gistic at 338
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
GNU Ghostscript 5.50 (2000-2-13)
Copyright (C) 1998 Aladdin Enterprises, Menlo Park, CA.  All rights reserved.
This software comes with NO WARRANTY: see the file COPYING for details.
Loading NimbusSanL-Regu font from /broad/tools/apps/matlab73/sys/ghostscript/fonts/n019003l.pfb... 2006324 628223 1369352 76663 1 done.
Error: /rangecheck in --.image1--
Operand stack:
   --dict:7/7(L)--
Execution stack:
   %interp_exit   .runexec2   --nostringval--   --nostringval--   --nostringval--   2   %stopped_push   --nostringval--   2   3   %oparray_pop   --nostringval--   --nostringval--   false   1   %stopped_push   1   3   %oparray_pop   .runexec2   --nostringval--   --nostringval--   --nostringval--   2   %stopped_push   --nostringval--   1   5   %oparray_pop   --nostringval--   --nostringval--
Dictionary stack:
   --dict:905/941(G)--   --dict:0/20(G)--   --dict:51/200(L)--   --dict:94/160(L)--   --dict:11/87(L)--
Current allocation mode is local
Current file position is 581691
setting renderer to painters
{Warning: Large-scale algorithm does not currently solve this problem
formulation,
using medium-scale algorithm instead.} 
> In quadprog at 291
  In find_text_pos at 42
  In draw_spaced_text at 42
  In plot_snp_score at 469
  In gistic_plots at 214
  In run_focal_gistic at 338
  In run_gistic20 at 122
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
GNU Ghostscript 5.50 (2000-2-13)
Copyright (C) 1998 Aladdin Enterprises, Menlo Park, CA.  All rights reserved.
This software comes with NO WARRANTY: see the file COPYING for details.
Loading NimbusSanL-Regu font from /broad/tools/apps/matlab73/sys/ghostscript/fonts/n019003l.pfb... 2006324 628223 1369352 76663 1 done.
Error: /rangecheck in --.image1--
Operand stack:
   --dict:7/7(L)--
Execution stack:
   %interp_exit   .runexec2   --nostringval--   --nostringval--   --nostringval--   2   %stopped_push   --nostringval--   2   3   %oparray_pop   --nostringval--   --nostringval--   false   1   %stopped_push   1   3   %oparray_pop   .runexec2   --nostringval--   --nostringval--   --nostringval--   2   %stopped_push   --nostringval--   1   5   %oparray_pop   --nostringval--   --nostringval--
Dictionary stack:
   --dict:905/941(G)--   --dict:0/20(G)--   --dict:51/200(L)--   --dict:94/160(L)--   --dict:11/87(L)--
Current allocation mode is local
Current file position is 114526
setting renderer to painters
Focal GISTIC completed without error
Running broad analysis...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Calculating median of arm values...
Finding median of arms on chromosome:
     1

     2

     3

     4

     5

     6

     7

     8

     9

    10

    11

    12

    13

    14

    15

    16

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    18

    19

    20

    21

    22

    23

Finding median of arms on chromosome:
     1

     2

     3

     4

     5

     6

     7

     8

     9

    10

    11

    12

    13

    14

    15

    16

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    18

    19

    20

    21

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    23

     1

     2

     3

     4

     5

     6

     7

     8

     9

    10

    11

    12

    13

    14

    15

    16

    17

    18

    19

    20

    21

    22

    23

    24

    25

    26

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    29

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    31

    32

    33

    34

    35

    36

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    38

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    40

Writing arm medians file...
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 162
  In run_gistic2_from_seg at 263
  In call_gistic2 at 108
Reducing all data to genes
Conflicting chromosomes (23 and 24) for gene AKAP17A !
Conflicting chromosomes (23 and 24) for gene AKAP17A !
reduce_to_genes: defining gene 1000 of 24274
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (24 and 23) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (24 and 23) for gene ASMTL-AS1 !
Conflicting chromosomes (23 and 24) for gene ASMTL-AS1 !
reduce_to_genes: defining gene 2000 of 24274
reduce_to_genes: defining gene 3000 of 24274
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
reduce_to_genes: defining gene 4000 of 24274
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (24 and 23) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (15 and 1) for gene DDX11L1 !
Conflicting chromosomes (23 and 24) for gene DHRSX !
reduce_to_genes: defining gene 5000 of 24274
Conflicting chromosomes (10 and 4) for gene DUX2 !
Conflicting chromosomes (10 and 4) for gene DUX4 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (10 and 4) for gene DUX4L3 !
Conflicting chromosomes (10 and 4) for gene DUX4L5 !
Conflicting chromosomes (10 and 4) for gene DUX4L6 !
Conflicting chromosomes (1 and 19) for gene FAM138A !
Conflicting chromosomes (1 and 19) for gene FAM138F !
reduce_to_genes: defining gene 6000 of 24274
Conflicting chromosomes (23 and 10) for gene FAM45B !
reduce_to_genes: defining gene 7000 of 24274
Conflicting chromosomes (23 and 24) for gene GTPBP6 !
reduce_to_genes: defining gene 8000 of 24274
Conflicting chromosomes (23 and 24) for gene IL3RA !
Conflicting chromosomes (23 and 24) for gene IL9R !
Conflicting chromosomes (23 and 24) for gene IL9R !
reduce_to_genes: defining gene 9000 of 24274
reduce_to_genes: defining gene 10000 of 24274
Conflicting chromosomes (1 and 5) for gene LOC100132062 !
Conflicting chromosomes (5 and 1) for gene LOC100132287 !
Conflicting chromosomes (5 and 1) for gene LOC100133331 !
reduce_to_genes: defining gene 11000 of 24274
reduce_to_genes: defining gene 12000 of 24274
Conflicting chromosomes (12 and 2) for gene MIR1244-1 !
Conflicting chromosomes (2 and 5) for gene MIR1244-1 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 2) for gene MIR1244-2 !
Conflicting chromosomes (12 and 2) for gene MIR1244-3 !
Conflicting chromosomes (2 and 5) for gene MIR1244-3 !
Conflicting chromosomes (10 and 23) for gene MIR1256 !
Conflicting chromosomes (23 and 24) for gene MIR3690 !
Conflicting chromosomes (2 and 3) for gene MIR4444-1 !
reduce_to_genes: defining gene 13000 of 24274
Conflicting chromosomes (9 and 6) for gene MIR548H3 !
reduce_to_genes: defining gene 14000 of 24274
Conflicting chromosomes (1 and 5) for gene OR4F16 !
Conflicting chromosomes (1 and 5) for gene OR4F29 !
Conflicting chromosomes (1 and 5) for gene OR4F3 !
reduce_to_genes: defining gene 15000 of 24274
Conflicting chromosomes (23 and 24) for gene P2RY8 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
reduce_to_genes: defining gene 16000 of 24274
Conflicting chromosomes (24 and 23) for gene PPP2R3B !
Conflicting chromosomes (24 and 23) for gene PPP2R3B-AS1 !
Conflicting chromosomes (23 and 24) for gene PPP2R3B-AS1 !
reduce_to_genes: defining gene 17000 of 24274
Conflicting chromosomes (6 and 8) for gene RNF5P1 !
reduce_to_genes: defining gene 18000 of 24274
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (24 and 23) for gene SLC25A6 !
reduce_to_genes: defining gene 19000 of 24274
Conflicting chromosomes (1 and 17) for gene SNORA59A !
Conflicting chromosomes (1 and 17) for gene SNORA59B !
Conflicting chromosomes (23 and 24) for gene SPRY3 !
reduce_to_genes: defining gene 20000 of 24274
reduce_to_genes: defining gene 21000 of 24274
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
reduce_to_genes: defining gene 22000 of 24274
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene XGPY2 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
reduce_to_genes: defining gene 23000 of 24274
reduce_to_genes: defining gene 24000 of 24274
reduce_to_genes: reducing gene 1000 of 24174
reduce_to_genes: reducing gene 2000 of 24174
reduce_to_genes: reducing gene 3000 of 24174
reduce_to_genes: reducing gene 4000 of 24174
reduce_to_genes: reducing gene 5000 of 24174
reduce_to_genes: reducing gene 6000 of 24174
reduce_to_genes: reducing gene 7000 of 24174
reduce_to_genes: reducing gene 8000 of 24174
reduce_to_genes: reducing gene 9000 of 24174
reduce_to_genes: reducing gene 10000 of 24174
reduce_to_genes: reducing gene 11000 of 24174
reduce_to_genes: reducing gene 12000 of 24174
reduce_to_genes: reducing gene 13000 of 24174
reduce_to_genes: reducing gene 14000 of 24174
reduce_to_genes: reducing gene 15000 of 24174
reduce_to_genes: reducing gene 16000 of 24174
reduce_to_genes: reducing gene 17000 of 24174
reduce_to_genes: reducing gene 18000 of 24174
reduce_to_genes: reducing gene 19000 of 24174
reduce_to_genes: reducing gene 20000 of 24174
reduce_to_genes: reducing gene 21000 of 24174
reduce_to_genes: reducing gene 22000 of 24174
reduce_to_genes: reducing gene 23000 of 24174
reduce_to_genes: reducing gene 24000 of 24174
        1000

        2000

        3000

        4000

        5000

        6000

        7000

        8000

        9000

       10000

       11000

       12000

       13000

       14000

       15000

       16000

       17000

       18000

       19000

       20000

       21000

       22000

       23000

       24000

Reducing focal data to genes
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Conflicting chromosomes (23 and 24) for gene AKAP17A !
Conflicting chromosomes (23 and 24) for gene AKAP17A !
reduce_to_genes: defining gene 1000 of 24274
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (24 and 23) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (24 and 23) for gene ASMTL-AS1 !
Conflicting chromosomes (23 and 24) for gene ASMTL-AS1 !
reduce_to_genes: defining gene 2000 of 24274
reduce_to_genes: defining gene 3000 of 24274
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
reduce_to_genes: defining gene 4000 of 24274
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (24 and 23) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (15 and 1) for gene DDX11L1 !
Conflicting chromosomes (23 and 24) for gene DHRSX !
reduce_to_genes: defining gene 5000 of 24274
Conflicting chromosomes (10 and 4) for gene DUX2 !
Conflicting chromosomes (10 and 4) for gene DUX4 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (10 and 4) for gene DUX4L3 !
Conflicting chromosomes (10 and 4) for gene DUX4L5 !
Conflicting chromosomes (10 and 4) for gene DUX4L6 !
Conflicting chromosomes (1 and 19) for gene FAM138A !
Conflicting chromosomes (1 and 19) for gene FAM138F !
reduce_to_genes: defining gene 6000 of 24274
Conflicting chromosomes (23 and 10) for gene FAM45B !
reduce_to_genes: defining gene 7000 of 24274
Conflicting chromosomes (23 and 24) for gene GTPBP6 !
reduce_to_genes: defining gene 8000 of 24274
Conflicting chromosomes (23 and 24) for gene IL3RA !
Conflicting chromosomes (23 and 24) for gene IL9R !
Conflicting chromosomes (23 and 24) for gene IL9R !
reduce_to_genes: defining gene 9000 of 24274
reduce_to_genes: defining gene 10000 of 24274
Conflicting chromosomes (1 and 5) for gene LOC100132062 !
Conflicting chromosomes (5 and 1) for gene LOC100132287 !
Conflicting chromosomes (5 and 1) for gene LOC100133331 !
reduce_to_genes: defining gene 11000 of 24274
reduce_to_genes: defining gene 12000 of 24274
Conflicting chromosomes (12 and 2) for gene MIR1244-1 !
Conflicting chromosomes (2 and 5) for gene MIR1244-1 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 2) for gene MIR1244-2 !
Conflicting chromosomes (12 and 2) for gene MIR1244-3 !
Conflicting chromosomes (2 and 5) for gene MIR1244-3 !
Conflicting chromosomes (10 and 23) for gene MIR1256 !
Conflicting chromosomes (23 and 24) for gene MIR3690 !
Conflicting chromosomes (2 and 3) for gene MIR4444-1 !
reduce_to_genes: defining gene 13000 of 24274
Conflicting chromosomes (9 and 6) for gene MIR548H3 !
reduce_to_genes: defining gene 14000 of 24274
Conflicting chromosomes (1 and 5) for gene OR4F16 !
Conflicting chromosomes (1 and 5) for gene OR4F29 !
Conflicting chromosomes (1 and 5) for gene OR4F3 !
reduce_to_genes: defining gene 15000 of 24274
Conflicting chromosomes (23 and 24) for gene P2RY8 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
reduce_to_genes: defining gene 16000 of 24274
Conflicting chromosomes (24 and 23) for gene PPP2R3B !
Conflicting chromosomes (24 and 23) for gene PPP2R3B-AS1 !
Conflicting chromosomes (23 and 24) for gene PPP2R3B-AS1 !
reduce_to_genes: defining gene 17000 of 24274
Conflicting chromosomes (6 and 8) for gene RNF5P1 !
reduce_to_genes: defining gene 18000 of 24274
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (24 and 23) for gene SLC25A6 !
reduce_to_genes: defining gene 19000 of 24274
Conflicting chromosomes (1 and 17) for gene SNORA59A !
Conflicting chromosomes (1 and 17) for gene SNORA59B !
Conflicting chromosomes (23 and 24) for gene SPRY3 !
reduce_to_genes: defining gene 20000 of 24274
reduce_to_genes: defining gene 21000 of 24274
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
reduce_to_genes: defining gene 22000 of 24274
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene XGPY2 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
reduce_to_genes: defining gene 23000 of 24274
reduce_to_genes: defining gene 24000 of 24274
reduce_to_genes: reducing gene 1000 of 24174
reduce_to_genes: reducing gene 2000 of 24174
reduce_to_genes: reducing gene 3000 of 24174
reduce_to_genes: reducing gene 4000 of 24174
reduce_to_genes: reducing gene 5000 of 24174
reduce_to_genes: reducing gene 6000 of 24174
reduce_to_genes: reducing gene 7000 of 24174
reduce_to_genes: reducing gene 8000 of 24174
reduce_to_genes: reducing gene 9000 of 24174
reduce_to_genes: reducing gene 10000 of 24174
reduce_to_genes: reducing gene 11000 of 24174
reduce_to_genes: reducing gene 12000 of 24174
reduce_to_genes: reducing gene 13000 of 24174
reduce_to_genes: reducing gene 14000 of 24174
reduce_to_genes: reducing gene 15000 of 24174
reduce_to_genes: reducing gene 16000 of 24174
reduce_to_genes: reducing gene 17000 of 24174
reduce_to_genes: reducing gene 18000 of 24174
reduce_to_genes: reducing gene 19000 of 24174
reduce_to_genes: reducing gene 20000 of 24174
reduce_to_genes: reducing gene 21000 of 24174
reduce_to_genes: reducing gene 22000 of 24174
reduce_to_genes: reducing gene 23000 of 24174
reduce_to_genes: reducing gene 24000 of 24174
        1000

        2000

        3000

        4000

        5000

        6000

        7000

        8000

        9000

       10000

       11000

       12000

       13000

       14000

       15000

       16000

       17000

       18000

       19000

       20000

       21000

       22000

       23000

       24000

Reducing broad data to genes
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Conflicting chromosomes (23 and 24) for gene AKAP17A !
Conflicting chromosomes (23 and 24) for gene AKAP17A !
reduce_to_genes: defining gene 1000 of 24274
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (23 and 24) for gene ASMT !
Conflicting chromosomes (24 and 23) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (23 and 24) for gene ASMTL !
Conflicting chromosomes (24 and 23) for gene ASMTL-AS1 !
Conflicting chromosomes (23 and 24) for gene ASMTL-AS1 !
reduce_to_genes: defining gene 2000 of 24274
reduce_to_genes: defining gene 3000 of 24274
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
Conflicting chromosomes (23 and 24) for gene CD99P1 !
reduce_to_genes: defining gene 4000 of 24274
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (23 and 24) for gene CRLF2 !
Conflicting chromosomes (24 and 23) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (23 and 24) for gene CSF2RA !
Conflicting chromosomes (15 and 1) for gene DDX11L1 !
Conflicting chromosomes (23 and 24) for gene DHRSX !
reduce_to_genes: defining gene 5000 of 24274
Conflicting chromosomes (10 and 4) for gene DUX2 !
Conflicting chromosomes (10 and 4) for gene DUX4 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (4 and 10) for gene DUX4L2 !
Conflicting chromosomes (10 and 4) for gene DUX4L3 !
Conflicting chromosomes (10 and 4) for gene DUX4L5 !
Conflicting chromosomes (10 and 4) for gene DUX4L6 !
Conflicting chromosomes (1 and 19) for gene FAM138A !
Conflicting chromosomes (1 and 19) for gene FAM138F !
reduce_to_genes: defining gene 6000 of 24274
Conflicting chromosomes (23 and 10) for gene FAM45B !
reduce_to_genes: defining gene 7000 of 24274
Conflicting chromosomes (23 and 24) for gene GTPBP6 !
reduce_to_genes: defining gene 8000 of 24274
Conflicting chromosomes (23 and 24) for gene IL3RA !
Conflicting chromosomes (23 and 24) for gene IL9R !
Conflicting chromosomes (23 and 24) for gene IL9R !
reduce_to_genes: defining gene 9000 of 24274
reduce_to_genes: defining gene 10000 of 24274
Conflicting chromosomes (1 and 5) for gene LOC100132062 !
Conflicting chromosomes (5 and 1) for gene LOC100132287 !
Conflicting chromosomes (5 and 1) for gene LOC100133331 !
reduce_to_genes: defining gene 11000 of 24274
reduce_to_genes: defining gene 12000 of 24274
Conflicting chromosomes (12 and 2) for gene MIR1244-1 !
Conflicting chromosomes (2 and 5) for gene MIR1244-1 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 12) for gene MIR1244-2 !
Conflicting chromosomes (5 and 2) for gene MIR1244-2 !
Conflicting chromosomes (12 and 2) for gene MIR1244-3 !
Conflicting chromosomes (2 and 5) for gene MIR1244-3 !
Conflicting chromosomes (10 and 23) for gene MIR1256 !
Conflicting chromosomes (23 and 24) for gene MIR3690 !
Conflicting chromosomes (2 and 3) for gene MIR4444-1 !
reduce_to_genes: defining gene 13000 of 24274
Conflicting chromosomes (9 and 6) for gene MIR548H3 !
reduce_to_genes: defining gene 14000 of 24274
Conflicting chromosomes (1 and 5) for gene OR4F16 !
Conflicting chromosomes (1 and 5) for gene OR4F29 !
Conflicting chromosomes (1 and 5) for gene OR4F3 !
reduce_to_genes: defining gene 15000 of 24274
Conflicting chromosomes (23 and 24) for gene P2RY8 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
Conflicting chromosomes (23 and 24) for gene PLCXD1 !
reduce_to_genes: defining gene 16000 of 24274
Conflicting chromosomes (24 and 23) for gene PPP2R3B !
Conflicting chromosomes (24 and 23) for gene PPP2R3B-AS1 !
Conflicting chromosomes (23 and 24) for gene PPP2R3B-AS1 !
reduce_to_genes: defining gene 17000 of 24274
Conflicting chromosomes (6 and 8) for gene RNF5P1 !
reduce_to_genes: defining gene 18000 of 24274
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (23 and 24) for gene SHOX !
Conflicting chromosomes (24 and 23) for gene SLC25A6 !
reduce_to_genes: defining gene 19000 of 24274
Conflicting chromosomes (1 and 17) for gene SNORA59A !
Conflicting chromosomes (1 and 17) for gene SNORA59B !
Conflicting chromosomes (23 and 24) for gene SPRY3 !
reduce_to_genes: defining gene 20000 of 24274
reduce_to_genes: defining gene 21000 of 24274
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
Conflicting chromosomes (2 and 13) for gene TTL !
reduce_to_genes: defining gene 22000 of 24274
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene VAMP7 !
Conflicting chromosomes (23 and 24) for gene XGPY2 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
Conflicting chromosomes (23 and 24) for gene ZBED1 !
reduce_to_genes: defining gene 23000 of 24274
reduce_to_genes: defining gene 24000 of 24274
reduce_to_genes: reducing gene 1000 of 24174
reduce_to_genes: reducing gene 2000 of 24174
reduce_to_genes: reducing gene 3000 of 24174
reduce_to_genes: reducing gene 4000 of 24174
reduce_to_genes: reducing gene 5000 of 24174
reduce_to_genes: reducing gene 6000 of 24174
reduce_to_genes: reducing gene 7000 of 24174
reduce_to_genes: reducing gene 8000 of 24174
reduce_to_genes: reducing gene 9000 of 24174
reduce_to_genes: reducing gene 10000 of 24174
reduce_to_genes: reducing gene 11000 of 24174
reduce_to_genes: reducing gene 12000 of 24174
reduce_to_genes: reducing gene 13000 of 24174
reduce_to_genes: reducing gene 14000 of 24174
reduce_to_genes: reducing gene 15000 of 24174
reduce_to_genes: reducing gene 16000 of 24174
reduce_to_genes: reducing gene 17000 of 24174
reduce_to_genes: reducing gene 18000 of 24174
reduce_to_genes: reducing gene 19000 of 24174
reduce_to_genes: reducing gene 20000 of 24174
reduce_to_genes: reducing gene 21000 of 24174
reduce_to_genes: reducing gene 22000 of 24174
reduce_to_genes: reducing gene 23000 of 24174
reduce_to_genes: reducing gene 24000 of 24174
        1000

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Calculating sample cutoffs...
Reading file using format:%s%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%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Writing sample cutoff file...
Thresholding data...
Reading file using format:%s%f%f
Reading file using format:%s%s%s%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%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Finished writing gene tables.
GISTIC2 run completed!
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Gistic2_Analysis.106.3775
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/160243
mFile: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Gistic2_Analysis.106.3775/call_gistic2
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Gistic2_Analysis.106.3775/call_gistic2 . /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN8/1677948/2.GDAC_MergeDataFiles.Finished/PANCAN8.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt /xchip/cga/reference/gistic2/genome.info.6.0_hg19.na31_minus_frequent_nan_probes_sorted_2.1.txt /xchip/cga/reference/gistic2/hg19_with_miR_20120227.mat /xchip/cga/reference/gistic2/CNV.hg19.bypos.111213.txt 0.1 0.1 1.5 0.7 0 0.99 4 1 2000 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Gistic2_Analysis.106.3775/cgaRevision.txt
