Broad GDAC awg_skcm__2012_12_21 Run Status : SKCM

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
SKCM	288	138	273	101	253	0	247	0	240	164	253

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	Pipeline	NotRunnable	Runnable	Successful	Unsuccessful
1	Aggregate_Clusters	0	0	1	0
2	Aggregate_Gene_Status	0	1	0	0
3	CoMut2.0	1	0	0	0
4	CopyNumber_Clustering_CNMF	0	0	1	0
5	CopyNumber_GeneBySample	0	0	1	0
6	CopyNumber_Gistic2	0	0	1	0
7	CopyNumber_Gistic2_Postprocess_Focal	0	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Arm	0	0	1	0
9	Correlate_Clinical_vs_CopyNumber_Focal	0	0	1	0
10	Correlate_Clinical_vs_Methylation	0	0	1	0
11	Correlate_Clinical_vs_miR	1	0	0	0
12	Correlate_Clinical_vs_miRseq	0	0	1	0
13	Correlate_Clinical_vs_Molecular_Signatures	0	0	1	0
14	Correlate_Clinical_vs_mRNA	1	0	0	0
15	Correlate_Clinical_vs_mRNAseq	0	0	1	0
16	Correlate_Clinical_vs_Mutation	1	0	0	0
17	Correlate_Clinical_vs_RPPA	0	0	1	0
18	Correlate_CopyNumber_vs_miR	1	0	0	0
19	Correlate_CopyNumber_vs_mRNA	1	0	0	0
20	Correlate_CopyNumber_vs_mRNAseq	0	0	1	0
21	Correlate_Methylation_vs_mRNA	0	0	1	0
22	GenerateStickFigures2.0	1	0	0	0
23	GenerateStickFiguresS2N	0	0	1	0
24	Methylation_Clustering_CNMF	0	0	1	0
25	Methylation_Preprocess	0	0	1	0
26	miRseq_Clustering_CNMF	0	0	1	0
27	miRseq_Clustering_Consensus	0	0	1	0
28	miRseq_Preprocess	0	0	1	0
29	miR_Clustering_CNMF	1	0	0	0
30	miR_Clustering_Consensus	1	0	0	0
31	miR_FindDirectTargets	1	0	0	0
32	miR_Preprocess	1	0	0	0
33	mRNAseq_Clustering_CNMF	0	0	1	0
34	mRNAseq_Clustering_Consensus	0	0	1	0
35	mRNAseq_Preprocess	0	0	1	0
36	mRNA_Clustering_CNMF	1	0	0	0
37	mRNA_Clustering_Consensus	1	0	0	0
38	mRNA_Preprocess_Median	1	0	0	0
39	Mutation_Assessor	1	0	0	0
40	MutSigNozzleReport2.0	1	0	0	0
41	MutSigNozzleReportS2N	0	0	1	0
42	MutSigPreprocess2.0	0	0	1	0
43	MutSigRun2.0	0	0	0	1
44	MutSigRunS2N	0	0	1	0
45	Paradigm	1	0	0	0
46	ParadigmPrepare	1	0	0	0
47	ParadigmPrepareWithCopyNumber	1	0	0	0
48	ParadigmPrepareWithRNASeq	0	0	1	0
49	ParadigmPrepareWithRNASeqAndCopyNumber	0	0	1	0
50	ParadigmPreprocess	1	0	0	0
51	ParadigmPreprocessExpression	1	0	0	0
52	ParadigmPreprocessRNASeq	0	0	1	0
53	ParadigmPreprocessWithCopyNumber	1	0	0	0
54	ParadigmPreprocessWithRNASeq	0	0	1	0
55	ParadigmPreprocessWithRNASeqAndCopyNumber	0	0	1	0
56	ParadigmReport	1	0	0	0
57	ParadigmReportPreprocess	1	0	0	0
58	ParadigmReportPreprocessWithCopyNumber	1	0	0	0
59	ParadigmReportPreprocessWithRNASeq	0	0	1	0
60	ParadigmReportPreprocessWithRNASeqAndCopyNumber	0	0	1	0
61	ParadigmReportWithCopyNumber	1	0	0	0
62	ParadigmReportWithRNASeq	0	0	1	0
63	ParadigmReportWithRNASeqAndCopyNumber	0	0	1	0
64	ParadigmWithCopyNumber	1	0	0	0
65	ParadigmWithRNASeq	0	0	1	0
66	ParadigmWithRNASeqAndCopyNumber	0	0	1	0
67	Pathway_FindEnrichedGenes	1	0	0	0
68	ProcessCoverageForMutSig2.0	0	0	1	0
69	RPPA_Clustering_CNMF	0	0	1	0
70	RPPA_Clustering_Consensus	0	0	1	0
	Total	28	1	40	1

This table generated on Tue Jan 8 14:40:48 2013

Broad GDAC Analyses Status awg_skcm__2012_12_21 Run for Tumor Type: SKCM

Broad GDAC Analyses Status
awg_skcm__2012_12_21 Run for Tumor Type: SKCM