Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(5p15.33)	13 (28%)	33	0.54749	1	0.71724	1	1	1	1	1	0.50167	1	0.44271	1	0.74275	1	0.62795	1
Amp Peak 2(8q24.3)	23 (50%)	23	5.1475e-05	0.00813	0.7048	1	0.46654	1	0.46654	1	0.53651	1	0.89821	1	0.23619	1	0.59338	1
Amp Peak 3(11q14.1)	7 (15%)	39	0.17062	1	0.17231	1	0.76316	1	0.76316	1	0.22918	1	0.11176	1	0.68857	1	0.3741	1
Amp Peak 4(13q31.3)	14 (30%)	32	0.036905	1	0.096525	1	0.8483	1	0.8483	1	1	1	1	1	0.32337	1	0.03288	1
Del Peak  1(1p22.1)	10 (22%)	36	0.18896	1	0.016146	1	0.22704	1	0.22704	1	0.71902	1	0.52077	1	0.15134	1	0.73654	1
Del Peak  2(1q41)	6 (13%)	40	1	1	0.31789	1	NA	NA	NA	NA	0.13945	1	0.20826	1	0.39554	1	0.40904	1
Del Peak  3(4q34.3)	13 (28%)	33	0.13894	1	0.77696	1	0.22704	1	0.22704	1	0.30725	1	0.76372	1	0.32337	1	0.91553	1
Del Peak  4(5q31.3)	15 (33%)	31	0.67041	1	0.43654	1	0.84996	1	0.84996	1	0.31609	1	0.18354	1	0.35553	1	0.59244	1
Del Peak  5(6q14.1)	22 (48%)	24	0.032219	1	0.08881	1	1	1	1	1	0.5282	1	0.077742	1	0.76831	1	0.92765	1
Del Peak  6(6q27)	22 (48%)	24	0.0031905	0.501	0.17099	1	0.8483	1	0.8483	1	1	1	0.55308	1	0.76831	1	0.40593	1
Del Peak  7(6q27)	22 (48%)	24	0.0031905	0.501	0.17099	1	0.8483	1	0.8483	1	1	1	0.55308	1	0.76831	1	0.40593	1
Del Peak  8(9p24.2)	32 (70%)	14	0.014887	1	0.0041669	0.638	0.46987	1	0.46987	1	0.73658	1	0.30545	1	0.2049	1	0.27194	1
Del Peak  9(9p21.3)	35 (76%)	11	0.0038399	0.591	0.12932	1	0.35888	1	0.35888	1	0.70605	1	0.85139	1	0.077562	1	0.0072905	1
Del Peak 10(10p15.3)	29 (63%)	17	0.0081208	1	0.54014	1	0.61713	1	0.61713	1	0.75232	1	0.60783	1	0.21152	1	1	1
Del Peak 11(10q23.31)	29 (63%)	17	0.0034265	0.531	0.059537	1	0.62491	1	0.62491	1	0.34153	1	0.23155	1	0.53343	1	0.22953	1
Del Peak 12(11q24.3)	22 (48%)	24	0.81039	1	0.52002	1	0.27697	1	0.27697	1	0.34747	1	0.05756	1	0.37622	1	0.92765	1
Del Peak 13(12q24.32)	11 (24%)	35	0.088457	1	0.12421	1	0.07469	1	0.07469	1	0.71902	1	0.87512	1	0.08079	1	0.094087	1
Del Peak 14(15q15.1)	11 (24%)	35	0.11114	1	0.24541	1	0.63158	1	0.63158	1	1	1	0.60725	1	1	1	0.34756	1
Del Peak 15(16q23.3)	17 (37%)	29	0.34877	1	0.1178	1	0.39319	1	0.39319	1	0.75232	1	0.60783	1	0.76488	1	0.72297	1
Del Peak 16(22q12.1)	10 (22%)	36	0.60349	1	0.046571	1	0.78947	1	0.78947	1	0.4455	1	0.49579	1	0.47637	1	0.45712	1