Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE GENDER DISTANT.METASTASIS LYMPH.NODE.METASTASIS TUMOR.STAGECODE NEOPLASM.DISEASESTAGE nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Chi-square test_P Chi-square test_Q t-test_P t-test_Q Chi-square test_P Chi-square test_Q 1p gain 3 (4%) 64 NA NA 0.25362 1 0.07684 1 0.24914 1 0.99096 1 0.9621 1 NA NA 0.13895 1 1q gain 16 (24%) 51 0.68581 1 0.80188 1 0.10609 1 0.76214 1 0.78648 1 0.64757 1 NA NA 0.77438 1 2p gain 6 (9%) 61 0.075997 1 0.0032921 1 0.19236 1 0.16681 1 0.96371 1 0.020714 1 NA NA 0.68933 1 2q gain 6 (9%) 61 0.075997 1 0.0032921 1 0.19236 1 0.16681 1 0.96371 1 0.020714 1 NA NA 0.68933 1 3p gain 4 (6%) 63 0.69578 1 0.46873 1 0.024721 1 0.59271 1 0.98391 1 0.41523 1 NA NA 0.92015 1 3q gain 5 (7%) 62 0.68029 1 0.54966 1 0.05142 1 1 1 0.97482 1 0.56701 1 NA NA 0.96834 1 4p gain 5 (7%) 62 0.82367 1 0.088579 1 1 1 1 1 0.97482 1 0.27733 1 NA NA 0.064995 1 4q gain 5 (7%) 62 0.82367 1 0.22521 1 0.75823 1 1 1 0.98391 1 0.3392 1 NA NA 0.13662 1 5p gain 7 (10%) 60 0.31803 1 0.83052 1 0.47035 1 1 1 0.082348 1 0.79936 1 NA NA 0.22676 1 6p gain 15 (22%) 52 0.37876 1 0.6948 1 0.52934 1 0.54231 1 0.31105 1 0.89385 1 NA NA 0.71526 1 6q gain 5 (7%) 62 NA NA 0.6871 1 0.58093 1 1 1 0.020241 1 0.94075 1 NA NA 0.50135 1 7p gain 40 (60%) 27 0.22402 1 0.63525 1 0.3942 1 0.036252 1 0.37881 1 0.40814 1 NA NA 0.52435 1 7q gain 44 (66%) 23 0.27513 1 0.48335 1 0.3881 1 0.026987 1 0.39983 1 0.51426 1 NA NA 0.24944 1 8p gain 12 (18%) 55 0.24201 1 0.85851 1 0.59339 1 0.086012 1 0.24626 1 0.18877 1 NA NA 0.5367 1 8q gain 23 (34%) 44 0.13987 1 0.70164 1 0.94062 1 0.060597 1 0.24951 1 0.38791 1 NA NA 0.54061 1 11p gain 5 (7%) 62 NA NA 0.11584 1 0.75823 1 1 1 0.97482 1 0.18253 1 NA NA 0.2475 1 11q gain 3 (4%) 64 NA NA 0.12326 1 1 1 1 1 0.99096 1 0.9621 1 NA NA 0.50731 1 12p gain 11 (16%) 56 0.59537 1 0.017453 1 0.70362 1 0.086225 1 0.24626 1 0.27115 1 NA NA 0.24099 1 12q gain 5 (7%) 62 0.70537 1 0.59155 1 1 1 0.16332 1 0.97482 1 0.016625 1 NA NA 0.29428 1 13q gain 8 (12%) 59 0.38345 1 0.32598 1 0.31759 1 1 1 0.95058 1 0.0083895 1 NA NA 0.035321 1 14q gain 5 (7%) 62 0.54427 1 0.60558 1 0.58093 1 0.16332 1 0.97482 1 0.010019 1 NA NA 0.68889 1 15q gain 11 (16%) 56 0.37156 1 0.019967 1 0.88372 1 0.31646 1 0.87839 1 0.47801 1 NA NA 0.50689 1 16p gain 5 (7%) 62 0.34047 1 0.067157 1 0.58093 1 1 1 0.97482 1 0.23788 1 NA NA 0.13714 1 16q gain 6 (9%) 61 0.34047 1 0.037402 1 0.7941 1 0.65512 1 0.96371 1 0.06218 1 NA NA 0.28188 1 17p gain 7 (10%) 60 0.52025 1 0.37365 1 0.6889 1 1 1 0.96371 1 0.95289 1 NA NA 0.31146 1 17q gain 6 (9%) 61 0.52025 1 0.054598 1 1 1 1 1 0.96371 1 0.95289 1 NA NA 0.31146 1 18p gain 10 (15%) 57 0.54489 1 0.34195 1 0.88243 1 0.47795 1 0.16606 1 0.20727 1 NA NA 0.077041 1 18q gain 4 (6%) 63 NA NA 0.79395 1 0.47535 1 0.29435 1 0.99096 1 0.95296 1 NA NA 4.1041e-05 0.0195 19p gain 6 (9%) 61 NA NA 0.47875 1 0.7941 1 0.65512 1 0.046657 1 0.8993 1 NA NA 0.018267 1 19q gain 7 (10%) 60 0.5032 1 0.35203 1 0.47035 1 0.67547 1 0.95058 1 0.66086 1 NA NA 0.01335 1 20p gain 24 (36%) 43 0.16981 1 0.023218 1 0.89239 1 0.056405 1 0.2843 1 0.6568 1 NA NA 0.38 1 20q gain 28 (42%) 39 0.38853 1 0.095024 1 1 1 0.008181 1 0.23285 1 0.63849 1 NA NA 0.42417 1 21q gain 4 (6%) 63 NA NA 0.032893 1 0.089505 1 0.29435 1 0.98391 1 0.40188 1 NA NA 0.34981 1 22q gain 17 (25%) 50 0.85 1 0.4195 1 0.018921 1 0.14687 1 0.12723 1 0.06576 1 NA NA 0.48474 1 1p loss 6 (9%) 61 0.83051 1 0.93591 1 0.7941 1 0.65512 1 0.96371 1 0.034325 1 NA NA 0.82385 1 1q loss 4 (6%) 63 0.5878 1 0.21443 1 0.13687 1 1 1 0.98391 1 0.16989 1 NA NA 0.84482 1 2p loss 7 (10%) 60 0.94334 1 0.78077 1 0.83067 1 0.20558 1 0.96371 1 0.84401 1 NA NA 0.33534 1 2q loss 7 (10%) 60 0.69565 1 0.65449 1 0.83067 1 0.034035 1 0.046657 1 0.8993 1 NA NA 0.15746 1 3p loss 9 (13%) 58 0.89273 1 0.82696 1 0.021657 1 0.46148 1 0.95058 1 0.50043 1 NA NA 0.72279 1 3q loss 9 (13%) 58 0.8808 1 0.5004 1 0.17617 1 0.14155 1 0.93546 1 0.61956 1 NA NA 0.61495 1 4p loss 4 (6%) 63 NA NA 0.014591 1 1 1 1 1 0.00055759 0.264 0.89106 1 NA NA NA NA 4q loss 4 (6%) 63 NA NA 0.014591 1 1 1 1 1 0.00055759 0.264 0.89106 1 NA NA NA NA 5p loss 9 (13%) 58 0.047507 1 0.66203 1 0.15634 1 0.70664 1 0.96371 1 0.84035 1 NA NA 0.50342 1 5q loss 20 (30%) 47 0.35007 1 0.50437 1 0.25678 1 1 1 0.42236 1 0.92223 1 NA NA 0.66332 1 6p loss 6 (9%) 61 0.94255 1 0.59897 1 0.05226 1 0.38578 1 0.96371 1 0.16514 1 NA NA 0.87207 1 6q loss 31 (46%) 36 0.55791 1 0.063924 1 0.22263 1 0.60779 1 0.53373 1 0.2989 1 NA NA 0.47295 1 8p loss 7 (10%) 60 0.45308 1 0.41538 1 0.83067 1 0.67547 1 0.082348 1 0.83507 1 NA NA 0.22464 1 9p loss 38 (57%) 29 0.75753 1 0.10298 1 0.14045 1 1 1 0.29727 1 0.36846 1 NA NA 0.32333 1 9q loss 29 (43%) 38 0.54443 1 0.8745 1 0.047959 1 0.11419 1 0.19899 1 0.54023 1 NA NA 0.12171 1 10p loss 36 (54%) 31 0.78226 1 0.95477 1 0.1626 1 0.12181 1 0.23285 1 0.055672 1 NA NA 0.59076 1 10q loss 45 (67%) 22 0.92829 1 0.58965 1 0.083828 1 0.02638 1 0.2333 1 0.030448 1 NA NA 0.60965 1 11p loss 13 (19%) 54 0.46779 1 0.78552 1 0.31256 1 0.10127 1 0.026906 1 0.073476 1 NA NA 0.13506 1 11q loss 15 (22%) 52 0.32053 1 0.71366 1 0.30451 1 0.067914 1 0.081511 1 0.19393 1 NA NA 0.094755 1 12p loss 3 (4%) 64 NA NA 0.65792 1 0.63895 1 0.032147 1 0.059499 1 0.58417 1 NA NA 0.69351 1 12q loss 4 (6%) 63 NA NA 0.62048 1 1 1 0.099957 1 0.059499 1 0.58417 1 NA NA 0.69351 1 13q loss 10 (15%) 57 0.95222 1 0.29896 1 0.17929 1 0.7182 1 0.080354 1 0.33059 1 NA NA 0.58221 1 14q loss 18 (27%) 49 0.26193 1 0.23813 1 1 1 0.77086 1 0.19492 1 0.49964 1 NA NA 0.29647 1 15q loss 6 (9%) 61 NA NA 0.94461 1 0.65372 1 0.085189 1 0.046657 1 0.84035 1 NA NA 0.63948 1 16p loss 5 (7%) 62 0.90598 1 0.24421 1 1 1 0.32118 1 0.98391 1 0.91465 1 NA NA 0.58568 1 16q loss 10 (15%) 57 0.7687 1 0.40164 1 1 1 0.27717 1 0.12338 1 0.17545 1 NA NA 0.14863 1 17p loss 12 (18%) 55 0.31048 1 0.61626 1 0.26052 1 0.18735 1 0.21032 1 0.42505 1 NA NA 0.74125 1 17q loss 5 (7%) 62 NA NA 0.78526 1 0.75823 1 1 1 0.2878 1 0.80882 1 NA NA 0.65757 1 18p loss 16 (24%) 51 0.77313 1 0.89227 1 0.022614 1 0.76214 1 0.77687 1 0.3216 1 NA NA 0.1181 1 18q loss 17 (25%) 50 0.70845 1 0.32236 1 0.29734 1 0.55071 1 0.38642 1 0.74784 1 NA NA 0.21828 1 19p loss 6 (9%) 61 0.61809 1 0.2989 1 1 1 0.085189 1 0.0091508 1 0.032532 1 NA NA 0.24591 1 19q loss 8 (12%) 59 0.93626 1 0.81959 1 0.13172 1 0.42306 1 0.0091508 1 0.039742 1 NA NA 0.45424 1 20p loss 3 (4%) 64 0.73461 1 0.73089 1 0.63895 1 1 1 0.99096 1 0.9621 1 NA NA 0.32787 1 21q loss 8 (12%) 59 0.48581 1 0.55754 1 1 1 1 1 0.93546 1 0.4131 1 NA NA 0.0059516 1 22q loss 4 (6%) 63 0.65617 1 0.080564 1 1 1 1 1 0.98391 1 0.90423 1 NA NA 0.54 1 Xq loss 4 (6%) 63 0.86068 1 0.44077 1 0.33996 1 0.099957 1 0.99096 1 0.95296 1 NA NA 0.030376 1