Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q
1p gain	6 (19%)	25	0.39439	1	0.66382	1	0.52569	1	1	1	0.44483	1	0.33143	1	1	1	0.78596	1
1q gain	11 (35%)	20	0.065893	1	0.057026	1	0.65702	1	1	1	0.32772	1	0.35583	1	0.27337	1	0.26669	1
3p gain	5 (16%)	26	1	1	1	1	0.52569	1	1	1	0.3223	1	0.45071	1	0.65394	1	0.61029	1
3q gain	6 (19%)	25	1	1	0.66382	1	1	1	1	1	0.28025	1	0.81176	1	1	1	0.78596	1
5p gain	5 (16%)	26	0.65394	1	1	1	1	1	1	1	1	1	1	1	0.65394	1	0.52059	1
5q gain	4 (13%)	27	1	1	1	1	1	1	1	1	0.81541	1	0.81313	1	0.33259	1	0.36704	1
6p gain	12 (39%)	19	0.47255	1	0.7241	1	0.34522	1	0.25692	1	1	1	0.64319	1	0.47255	1	0.7423	1
7p gain	12 (39%)	19	1	1	0.7241	1	0.62584	1	1	1	1	1	1	1	1	1	0.8699	1
7q gain	11 (35%)	20	0.71599	1	1	1	0.62584	1	1	1	1	1	1	1	0.71599	1	0.86565	1
8p gain	6 (19%)	25	1	1	0.66382	1	1	1	1	1	0.73048	1	1	1	1	1	0.78596	1
8q gain	7 (23%)	24	0.39439	1	0.67055	1	1	1	1	1	0.87116	1	0.66794	1	0.39439	1	0.28611	1
13q gain	3 (10%)	28	0.59956	1	1	1	1	1	1	1	1	1	0.38799	1	0.59956	1	0.3851	1
14q gain	5 (16%)	26	0.65394	1	0.048202	1	0.52569	1	1	1	1	1	0.29291	1	0.17192	1	0.47843	1
15q gain	5 (16%)	26	1	1	1	1	1	1	1	1	0.05085	1	0.45071	1	1	1	0.27284	1
17q gain	5 (16%)	26	1	1	1	1	0.62139	1	1	1	0.3223	1	0.33674	1	0.17192	1	0.33204	1
18p gain	4 (13%)	27	1	1	1	1	1	1	1	1	0.41478	1	0.89321	1	0.33259	1	0.67021	1
19p gain	4 (13%)	27	0.33259	1	0.60667	1	1	1	1	1	0.27494	1	0.18039	1	0.33259	1	0.78374	1
19q gain	4 (13%)	27	0.33259	1	0.60667	1	1	1	1	1	0.27494	1	0.18039	1	0.33259	1	0.78374	1
20p gain	8 (26%)	23	1	1	0.698	1	0.52569	1	1	1	0.77453	1	0.49512	1	0.21997	1	0.28802	1
20q gain	10 (32%)	21	0.45779	1	1	1	1	1	1	1	0.39598	1	0.4819	1	0.70425	1	0.61691	1
22q gain	11 (35%)	20	0.71599	1	1	1	1	1	0.53924	1	0.64348	1	1	1	1	1	0.78777	1
1p loss	3 (10%)	28	0.10122	1	1	1	1	1	1	1	0.24138	1	0.10145	1	0.59956	1	0.50631	1
2q loss	3 (10%)	28	1	1	0.23226	1	0.52569	1	1	1	1	1	0.67519	1	0.59956	1	0.91928	1
4p loss	5 (16%)	26	0.65394	1	1	1	1	1	1	1	0.0075804	1	0.13034	1	0.33259	1	0.011844	1
4q loss	5 (16%)	26	1	1	0.63581	1	0.27273	1	1	1	0.05085	1	0.51798	1	1	1	0.22251	1
5p loss	5 (16%)	26	0.33259	1	1	1	0.27273	1	1	1	0.3223	1	0.91101	1	1	1	0.16189	1
5q loss	7 (23%)	24	0.39439	1	0.67055	1	1	1	1	1	0.22452	1	0.52515	1	0.39439	1	0.1498	1
6q loss	10 (32%)	21	0.13505	1	1	1	0.62584	1	0.067194	1	0.20681	1	0.4819	1	1	1	0.30412	1
8p loss	3 (10%)	28	0.59956	1	1	1	0.20949	1	0.45285	1	0.24138	1	0.76863	1	0.22581	1	0.3328	1
9p loss	17 (55%)	14	0.073173	1	0.075921	1	0.65702	1	1	1	0.35275	1	0.33521	1	1	1	0.99025	1
9q loss	15 (48%)	16	0.72443	1	0.28516	1	1	1	0.31677	1	0.90057	1	0.49451	1	0.28897	1	0.41919	1
10p loss	8 (26%)	23	0.43315	1	0.23991	1	0.36601	1	0.27273	1	0.11072	1	0.33247	1	0.43315	1	0.14815	1
10q loss	8 (26%)	23	0.43315	1	0.23991	1	0.36601	1	0.27273	1	0.11072	1	0.23998	1	1	1	0.01843	1
11p loss	11 (35%)	20	0.71599	1	0.258	1	1	1	1	1	1	1	0.65831	1	1	1	0.51472	1
11q loss	10 (32%)	21	0.45779	1	0.067989	1	0.65702	1	1	1	0.44313	1	0.68818	1	0.45779	1	0.18303	1
12p loss	3 (10%)	28	1	1	0.23226	1	1	1	1	1	0.16663	1	0.87542	1	1	1	0.20861	1
12q loss	4 (13%)	27	1	1	0.10745	1	1	1	1	1	0.64761	1	0.81313	1	1	1	0.45665	1
13q loss	7 (23%)	24	1	1	0.19755	1	0.31849	1	1	1	0.30885	1	0.52515	1	1	1	0.30876	1
14q loss	4 (13%)	27	1	1	0.30412	1	1	1	1	1	0.16027	1	0.62212	1	1	1	0.83782	1
16q loss	5 (16%)	26	0.33259	1	0.34446	1	0.52569	1	1	1	0.48674	1	0.91101	1	1	1	0.47843	1
17p loss	7 (23%)	24	0.39439	1	1	1	1	1	1	1	0.48463	1	0.60565	1	0.39439	1	0.57431	1
18p loss	5 (16%)	26	0.65394	1	0.34446	1	1	1	0.53924	1	0.25821	1	0.51798	1	0.65394	1	0.61029	1
18q loss	4 (13%)	27	1	1	0.60667	1	1	1	1	1	1	1	0.89321	1	1	1	0.78374	1
21q loss	7 (23%)	24	1	1	1	1	0.62139	1	0.53924	1	0.038449	1	0.32544	1	0.68508	1	0.47403	1