Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q
Amp Peak 1(1p12)	10 (32%)	21	0.45779	1	0.44136	1	0.36601	1	1	1	0.70208	1	0.83733	1	1	1	0.45527	1
Amp Peak 2(1q44)	19 (61%)	12	0.065893	1	0.28831	1	1	1	1	1	0.3703	1	0.55127	1	0.065893	1	0.048396	1
Amp Peak 3(7p22.3)	16 (52%)	15	0.47949	1	1	1	0.66685	1	0.59006	1	0.81535	1	0.95891	1	0.47949	1	0.62773	1
Amp Peak 4(7q36.1)	18 (58%)	13	0.72239	1	0.71684	1	0.66685	1	1	1	0.38573	1	0.7427	1	1	1	0.95807	1
Amp Peak 5(12p12.1)	5 (16%)	26	0.65394	1	0.14835	1	1	1	0.45285	1	0.39352	1	1	1	1	1	0.30129	1
Amp Peak 6(15q26.2)	11 (35%)	20	1	1	1	1	0.2719	1	0.53924	1	0.23169	1	0.55683	1	0.71599	1	0.99468	1
Amp Peak 7(17q25.3)	16 (52%)	15	0.15561	1	0.72239	1	1	1	0.60361	1	0.21076	1	0.75485	1	0.47949	1	0.55347	1
Del Peak  1(1p36.31)	7 (23%)	24	0.037251	1	0.41169	1	1	1	0.45285	1	0.046882	1	0.048262	1	1	1	0.047234	1
Del Peak  2(1p13.2)	9 (29%)	22	0.25241	1	0.4564	1	0.62139	1	0.53924	1	0.32924	1	1	1	1	1	0.50631	1
Del Peak  3(2q37.3)	10 (32%)	21	1	1	1	1	0.36601	1	0.27273	1	0.70208	1	0.59687	1	0.45779	1	0.50631	1
Del Peak  4(3q23)	4 (13%)	27	1	1	0.10745	1	0.52569	1	1	1	1	1	0.89321	1	1	1	0.61372	1
Del Peak  5(6q23.2)	14 (45%)	17	0.0038476	0.585	0.47301	1	0.19303	1	0.31677	1	0.18334	1	0.43825	1	0.47949	1	0.49097	1
Del Peak  6(9p21.3)	20 (65%)	11	0.13505	1	0.15349	1	1	1	1	1	0.71911	1	0.84479	1	0.71599	1	0.76033	1
Del Peak  7(10p15.1)	13 (42%)	18	0.72239	1	1	1	0.088621	1	0.10446	1	0.03357	1	0.057056	1	0.72239	1	0.1935	1
Del Peak  8(10q24.33)	14 (45%)	17	1	1	0.47301	1	0.088621	1	0.10446	1	0.22397	1	0.20076	1	1	1	0.08106	1
Del Peak  9(11q24.3)	21 (68%)	10	0.25241	1	1	1	0.62139	1	0.19368	1	1	1	0.43493	1	0.70425	1	0.9839	1
Del Peak 10(13q34)	8 (26%)	23	0.68508	1	0.41248	1	0.62584	1	1	1	0.1304	1	0.25824	1	1	1	0.42997	1
Del Peak 11(14q23.3)	9 (29%)	22	0.43315	1	0.23295	1	1	1	1	1	0.1163	1	0.50467	1	0.43315	1	0.71695	1
Del Peak 12(16q12.1)	14 (45%)	17	0.28516	1	1	1	0.40503	1	0.10446	1	0.026294	1	0.031061	1	1	1	0.61184	1