Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p13.2)	21 (34%)	41	0.28696	1	0.56097	1	1	1	0.70969	1	0.79158	1	0.35343	1	0.62573	1	0.066641	1
Amp Peak  2(1q31.2)	37 (60%)	25	0.027096	1	0.65026	1	0.74753	1	0.48707	1	0.20442	1	0.64002	1	0.25012	1	0.332	1
Amp Peak  3(1q44)	38 (61%)	24	0.028397	1	0.41516	1	0.74753	1	0.37213	1	0.16594	1	0.63635	1	0.25667	1	0.16326	1
Amp Peak  4(5p15.33)	13 (21%)	49	0.8391	1	0.85858	1	1	1	0.30645	1	0.49826	1	0.67021	1	0.68919	1	0.71869	1
Amp Peak  5(6p25.1)	46 (74%)	16	0.0046267	1	0.04207	1	0.71643	1	0.96602	1	0.27335	1	0.80959	1	0.040956	1	0.0021307	0.539
Amp Peak  6(7p21.3)	22 (35%)	40	0.2276	1	0.16677	1	0.5006	1	0.5078	1	0.39961	1	0.70643	1	0.0012907	0.332	0.025959	1
Amp Peak  7(11q14.1)	10 (16%)	52	1	1	0.91062	1	1	1	0.35211	1	1	1	0.90444	1	0.28893	1	0.67316	1
Amp Peak  8(12q15)	9 (15%)	53	0.00010545	0.0277	0.90526	1	0.40748	1	0.43092	1	0.44533	1	0.53689	1	0.10574	1	0.12978	1
Amp Peak  9(15q26.1)	18 (29%)	44	0.11965	1	0.60217	1	0.45058	1	0.53927	1	0.22569	1	0.32591	1	0.12195	1	0.91021	1
Amp Peak 10(17q25.3)	25 (40%)	37	0.059396	1	0.42142	1	1	1	0.097935	1	0.46743	1	0.64002	1	0.17248	1	0.056688	1
Amp Peak 11(20q13.2)	28 (45%)	34	0.012169	1	0.08831	1	1	1	0.46937	1	0.52962	1	0.5795	1	0.30261	1	0.46018	1
Amp Peak 12(22q13.2)	23 (37%)	39	0.0030424	0.767	0.57347	1	0.73109	1	0.27413	1	0.89472	1	0.59475	1	0.18261	1	0.13514	1
Del Peak  1(1p36.13)	15 (24%)	47	0.74761	1	0.011459	1	0.48012	1	0.10016	1	0.37048	1	0.09344	1	0.88862	1	1	1
Del Peak  2(4q34.3)	15 (24%)	47	0.008074	1	0.56945	1	0.043596	1	0.059343	1	0.091357	1	0.063818	1	0.013392	1	0.0074613	1
Del Peak  3(5q31.1)	28 (45%)	34	0.0016898	0.431	0.0001274	0.0333	1	1	0.69428	1	0.18029	1	0.069071	1	0.86165	1	0.19643	1
Del Peak  4(5q31.1)	28 (45%)	34	0.0016898	0.431	0.0001274	0.0333	1	1	0.69428	1	0.18029	1	0.069071	1	0.86165	1	0.19643	1
Del Peak  5(6q16.3)	42 (68%)	20	7.1591e-06	0.00189	0.88887	1	0.74105	1	0.82179	1	0.040104	1	0.040762	1	0.10608	1	0.010009	1
Del Peak  6(6q22.31)	43 (69%)	19	0.00018216	0.0472	0.88529	1	0.5006	1	0.90689	1	0.16292	1	0.22684	1	0.065618	1	0.0047083	1
Del Peak  7(6q26)	44 (71%)	18	0.0001257	0.0329	0.68548	1	0.5006	1	0.90689	1	0.26004	1	0.32591	1	0.034868	1	0.0016808	0.43
Del Peak  8(7q31.1)	11 (18%)	51	0.58522	1	0.16194	1	1	1	0.1284	1	0.77815	1	0.75741	1	0.64888	1	0.54697	1
Del Peak  9(9p23)	47 (76%)	15	0.17551	1	0.17622	1	1	1	0.1388	1	0.23945	1	0.42031	1	0.88862	1	0.11573	1
Del Peak 10(9p21.3)	52 (84%)	10	0.084223	1	0.51749	1	1	1	0.37106	1	0.09125	1	0.14616	1	0.7217	1	0.11969	1
Del Peak 11(10p15.3)	34 (55%)	28	0.047699	1	0.17557	1	1	1	0.52392	1	0.14468	1	0.22574	1	0.59009	1	0.23084	1
Del Peak 12(10q23.31)	36 (58%)	26	0.20236	1	0.69023	1	0.75237	1	0.20141	1	0.14906	1	0.2467	1	0.32077	1	0.085301	1
Del Peak 13(11q24.2)	42 (68%)	20	0.48406	1	0.66071	1	0.5006	1	0.48984	1	0.78572	1	0.693	1	0.58207	1	0.45445	1
Del Peak 14(12p12.3)	14 (23%)	48	0.76588	1	0.2192	1	0.12739	1	0.24481	1	0.59009	1	1	1	0.742	1	0.72525	1
Del Peak 15(12q23.3)	21 (34%)	41	0.0048621	1	0.21991	1	0.5006	1	0.67324	1	0.43976	1	0.73823	1	0.80506	1	0.19167	1
Del Peak 16(13q14.2)	9 (15%)	53	0.38946	1	0.060775	1	1	1	0.41945	1	0.27245	1	0.53689	1	0.16049	1	1	1
Del Peak 17(14q31.3)	25 (40%)	37	0.0054198	1	0.80574	1	0.74753	1	0.032509	1	0.2832	1	0.16914	1	0.80782	1	0.071664	1
Del Peak 18(15q13.3)	19 (31%)	43	0.2741	1	0.4189	1	0.73109	1	0.80497	1	0.83385	1	0.88099	1	0.25817	1	0.14778	1
Del Peak 19(16p13.3)	12 (19%)	50	0.80704	1	1	1	0.091476	1	0.6234	1	0.77774	1	0.77168	1	0.24299	1	0.075575	1
Del Peak 20(16q23.3)	20 (32%)	42	0.96355	1	0.66071	1	0.5006	1	0.92968	1	0.78572	1	0.83048	1	0.71645	1	0.34809	1
Del Peak 21(21q11.2)	15 (24%)	47	0.28427	1	0.15205	1	1	1	0.47339	1	0.0011201	0.289	0.11102	1	0.88862	1	1	1